Query 039885
Match_columns 674
No_of_seqs 588 out of 3849
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 04:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-44 6.4E-49 401.7 26.1 289 140-453 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.1E-34 7.1E-39 324.7 19.9 266 139-445 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-33 8.3E-38 343.9 22.9 283 134-451 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.2E-30 1.8E-34 289.3 22.7 276 136-448 123-449 (591)
5 4fcg_A Uncharacterized protein 99.7 2E-17 6.7E-22 171.8 11.9 175 472-670 127-310 (328)
6 4fcg_A Uncharacterized protein 99.7 4.1E-17 1.4E-21 169.4 12.1 177 471-673 103-289 (328)
7 1ogq_A PGIP-2, polygalacturona 99.6 4.5E-16 1.6E-20 160.5 10.6 129 472-610 50-185 (313)
8 2qen_A Walker-type ATPase; unk 99.6 2.8E-15 9.5E-20 157.0 16.6 282 133-444 8-348 (350)
9 2o6q_A Variable lymphocyte rec 99.6 2.6E-15 9E-20 151.3 12.8 178 470-672 35-216 (270)
10 1ogq_A PGIP-2, polygalacturona 99.6 1.4E-15 5E-20 156.7 10.0 185 472-672 76-279 (313)
11 1w5s_A Origin recognition comp 99.6 5.8E-14 2E-18 150.6 20.9 211 136-348 21-267 (412)
12 2z62_A TOLL-like receptor 4, v 99.6 4E-15 1.4E-19 150.4 10.7 133 470-613 26-163 (276)
13 1ozn_A Reticulon 4 receptor; N 99.6 6.1E-15 2.1E-19 149.9 11.7 128 471-609 31-163 (285)
14 2fna_A Conserved hypothetical 99.6 5.3E-14 1.8E-18 147.6 19.0 277 134-444 10-356 (357)
15 1p9a_G Platelet glycoprotein I 99.6 5.2E-15 1.8E-19 150.7 10.8 175 470-672 29-206 (290)
16 3m19_A Variable lymphocyte rec 99.6 7.2E-15 2.5E-19 146.4 11.3 156 470-646 33-192 (251)
17 2z80_A TOLL-like receptor 2, v 99.6 4.8E-15 1.6E-19 155.6 9.6 179 470-672 50-233 (353)
18 1ozn_A Reticulon 4 receptor; N 99.6 1.1E-14 3.8E-19 147.9 11.3 179 470-672 54-236 (285)
19 3rgz_A Protein brassinosteroid 99.5 1.4E-14 4.9E-19 167.9 13.4 177 472-672 466-715 (768)
20 1h6u_A Internalin H; cell adhe 99.5 3.3E-14 1.1E-18 146.1 14.6 167 471-672 62-228 (308)
21 3zyi_A Leucine-rich repeat-con 99.5 1.1E-14 3.7E-19 158.3 11.5 133 470-612 73-209 (452)
22 1h6u_A Internalin H; cell adhe 99.5 2.3E-14 7.9E-19 147.2 13.2 167 471-672 40-206 (308)
23 3zyj_A Leucine-rich repeat-con 99.5 1.5E-14 5.2E-19 156.5 12.1 133 470-612 62-198 (440)
24 1h6t_A Internalin B; cell adhe 99.5 4.1E-14 1.4E-18 144.1 13.7 166 472-672 46-211 (291)
25 3rgz_A Protein brassinosteroid 99.5 2.7E-14 9.3E-19 165.6 14.0 177 472-672 442-691 (768)
26 3vq2_A TLR4, TOLL-like recepto 99.5 1.5E-14 5E-19 163.4 11.3 180 470-672 30-215 (606)
27 1p9a_G Platelet glycoprotein I 99.5 2.4E-14 8.3E-19 145.7 11.4 174 471-672 9-183 (290)
28 2o6q_A Variable lymphocyte rec 99.5 2.4E-14 8.1E-19 144.3 11.1 173 473-672 17-192 (270)
29 3rfs_A Internalin B, repeat mo 99.5 4.1E-14 1.4E-18 142.7 12.4 124 473-610 42-168 (272)
30 2id5_A Lingo-1, leucine rich r 99.5 9.4E-14 3.2E-18 152.0 14.8 177 470-671 30-210 (477)
31 4ecn_A Leucine-rich repeat pro 99.5 1.7E-14 5.7E-19 167.1 9.1 128 471-610 447-606 (876)
32 2z66_A Variable lymphocyte rec 99.5 1.9E-14 6.4E-19 147.9 8.6 179 470-672 26-234 (306)
33 2z66_A Variable lymphocyte rec 99.5 3.4E-14 1.2E-18 145.9 10.5 177 471-672 77-259 (306)
34 2xwt_C Thyrotropin receptor; s 99.5 2.8E-14 9.6E-19 140.9 9.0 132 470-611 29-168 (239)
35 2z7x_B TOLL-like receptor 1, v 99.5 8.2E-14 2.8E-18 154.2 12.8 120 476-610 4-126 (520)
36 2z81_A CD282 antigen, TOLL-lik 99.5 4.6E-14 1.6E-18 157.4 10.8 134 470-613 24-162 (549)
37 3m19_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 136.8 12.5 173 473-672 15-190 (251)
38 3zyi_A Leucine-rich repeat-con 99.5 7.4E-14 2.5E-18 151.7 11.1 175 472-672 123-301 (452)
39 4eco_A Uncharacterized protein 99.5 1.4E-14 4.9E-19 164.1 5.7 111 487-608 239-362 (636)
40 4ezg_A Putative uncharacterize 99.5 1.8E-13 6.1E-18 130.8 12.3 147 471-643 43-191 (197)
41 3o6n_A APL1; leucine-rich repe 99.5 1.3E-13 4.3E-18 146.8 12.5 131 471-612 44-178 (390)
42 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 135.6 11.0 131 470-611 38-171 (229)
43 2z80_A TOLL-like receptor 2, v 99.5 1E-13 3.5E-18 145.4 11.4 169 477-672 36-209 (353)
44 3zyj_A Leucine-rich repeat-con 99.5 8.4E-14 2.9E-18 150.7 11.0 176 471-672 111-290 (440)
45 4ecn_A Leucine-rich repeat pro 99.5 3.1E-14 1.1E-18 164.8 7.8 158 487-672 440-630 (876)
46 1m9s_A Internalin B; cell inva 99.5 1E-13 3.4E-18 155.1 11.5 165 472-671 43-207 (605)
47 3rfs_A Internalin B, repeat mo 99.5 9.3E-14 3.2E-18 140.0 9.6 155 470-646 61-218 (272)
48 1xku_A Decorin; proteoglycan, 99.5 2.2E-13 7.4E-18 141.5 12.4 185 470-672 50-251 (330)
49 3oja_B Anopheles plasmodium-re 99.5 1.3E-13 4.4E-18 155.2 11.5 129 472-611 51-183 (597)
50 3v47_A TOLL-like receptor 5B a 99.5 1.4E-13 4.9E-18 149.5 11.4 133 470-613 28-168 (455)
51 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 135.1 9.6 152 474-648 21-174 (229)
52 4eco_A Uncharacterized protein 99.5 1.2E-13 4.2E-18 156.4 10.7 178 473-672 403-598 (636)
53 2ft3_A Biglycan; proteoglycan, 99.4 2.9E-13 9.9E-18 140.7 12.5 123 470-606 52-179 (332)
54 1ziw_A TOLL-like receptor 3; i 99.4 2.1E-13 7.1E-18 156.2 12.1 132 470-611 23-157 (680)
55 1xku_A Decorin; proteoglycan, 99.4 5.7E-13 1.9E-17 138.3 13.8 109 491-610 141-251 (330)
56 2z63_A TOLL-like receptor 4, v 99.4 1.8E-13 6.2E-18 153.2 10.7 180 470-671 26-210 (570)
57 2ell_A Acidic leucine-rich nuc 99.4 1.5E-13 5.2E-18 127.6 8.2 129 470-611 22-159 (168)
58 3t6q_A CD180 antigen; protein- 99.4 1.2E-13 4.3E-18 155.8 9.0 132 470-612 31-166 (606)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3E-13 1E-17 151.2 11.8 122 474-610 33-157 (562)
60 2v9t_B SLIT homolog 2 protein 99.4 3.5E-13 1.2E-17 131.1 10.6 130 470-610 30-163 (220)
61 3oja_B Anopheles plasmodium-re 99.4 8.3E-13 2.8E-17 148.6 15.1 173 471-672 122-356 (597)
62 4ezg_A Putative uncharacterize 99.4 4.4E-13 1.5E-17 128.1 11.0 150 492-672 41-192 (197)
63 2id5_A Lingo-1, leucine rich r 99.4 5.9E-13 2E-17 145.6 13.4 130 471-611 55-188 (477)
64 4fmz_A Internalin; leucine ric 99.4 7.9E-13 2.7E-17 138.2 13.8 168 471-672 65-232 (347)
65 3o6n_A APL1; leucine-rich repe 99.4 1.1E-12 3.9E-17 139.4 15.2 106 547-672 244-350 (390)
66 4g8a_A TOLL-like receptor 4; l 99.4 2.6E-13 9E-18 153.7 10.9 133 470-613 50-187 (635)
67 3j0a_A TOLL-like receptor 5; m 99.4 7.1E-13 2.4E-17 155.3 14.6 180 470-671 22-214 (844)
68 2xwt_C Thyrotropin receptor; s 99.4 4E-13 1.4E-17 132.5 10.4 176 470-674 53-239 (239)
69 1wwl_A Monocyte differentiatio 99.4 2.4E-13 8.2E-18 139.9 8.7 173 470-672 119-307 (312)
70 1wwl_A Monocyte differentiatio 99.4 2.2E-13 7.4E-18 140.3 8.2 174 471-672 94-285 (312)
71 2z81_A CD282 antigen, TOLL-lik 99.4 3.6E-13 1.2E-17 150.1 10.5 146 477-644 10-159 (549)
72 1fnn_A CDC6P, cell division co 99.4 4.9E-11 1.7E-15 126.6 26.2 207 136-347 16-247 (389)
73 2v9t_B SLIT homolog 2 protein 99.4 4.7E-13 1.6E-17 130.2 9.7 150 475-647 14-166 (220)
74 3vq2_A TLR4, TOLL-like recepto 99.4 3.8E-13 1.3E-17 151.8 10.2 177 471-672 375-556 (606)
75 1xeu_A Internalin C; cellular 99.4 6.3E-13 2.1E-17 133.1 10.6 143 471-643 40-182 (263)
76 2v70_A SLIT-2, SLIT homolog 2 99.4 5.3E-13 1.8E-17 129.9 9.8 132 470-612 30-166 (220)
77 2o6s_A Variable lymphocyte rec 99.4 9.1E-13 3.1E-17 127.0 11.2 130 470-610 26-159 (208)
78 2z7x_B TOLL-like receptor 1, v 99.4 9E-13 3.1E-17 145.8 12.5 127 470-611 19-150 (520)
79 2je0_A Acidic leucine-rich nuc 99.4 2.1E-13 7.3E-18 123.9 6.1 124 470-606 15-147 (149)
80 4glp_A Monocyte differentiatio 99.4 4.2E-13 1.4E-17 138.0 9.0 173 470-672 115-305 (310)
81 2o6s_A Variable lymphocyte rec 99.4 4.1E-13 1.4E-17 129.4 8.3 148 475-645 10-160 (208)
82 2v70_A SLIT-2, SLIT homolog 2 99.4 9.1E-13 3.1E-17 128.2 10.7 150 475-647 14-167 (220)
83 1o6v_A Internalin A; bacterial 99.4 1.7E-12 5.8E-17 141.5 14.0 118 472-606 46-163 (466)
84 2ft3_A Biglycan; proteoglycan, 99.4 1.2E-12 4E-17 136.0 12.1 71 536-610 180-252 (332)
85 4glp_A Monocyte differentiatio 99.4 8.8E-13 3E-17 135.6 10.7 175 473-672 92-283 (310)
86 3t6q_A CD180 antigen; protein- 99.4 1.1E-12 3.6E-17 148.2 12.0 130 471-610 277-411 (606)
87 4b8c_D Glucose-repressible alc 99.4 1.3E-13 4.5E-18 158.0 4.0 114 472-596 224-337 (727)
88 1xeu_A Internalin C; cellular 99.4 1.7E-12 5.9E-17 129.9 11.5 126 470-613 61-186 (263)
89 4fmz_A Internalin; leucine ric 99.4 3.3E-12 1.1E-16 133.4 14.2 169 470-672 86-254 (347)
90 3v47_A TOLL-like receptor 5B a 99.4 1.4E-12 4.7E-17 141.8 11.5 129 521-672 275-406 (455)
91 2ast_B S-phase kinase-associat 99.4 1.6E-13 5.3E-18 142.9 3.8 179 471-671 92-282 (336)
92 1njg_A DNA polymerase III subu 99.4 1E-11 3.6E-16 122.3 16.8 198 137-350 23-231 (250)
93 4b8c_D Glucose-repressible alc 99.4 7.6E-13 2.6E-17 151.6 9.3 88 514-610 217-304 (727)
94 3j0a_A TOLL-like receptor 5; m 99.4 2E-12 7E-17 151.4 13.2 172 475-672 7-185 (844)
95 2z62_A TOLL-like receptor 4, v 99.4 1.2E-12 4.2E-17 132.0 9.9 141 482-644 17-160 (276)
96 1a9n_A U2A', U2A'; complex (nu 99.4 8.8E-13 3E-17 123.5 7.9 126 471-610 18-151 (176)
97 3bz5_A Internalin-J, INLJ; leu 99.4 3.1E-12 1.1E-16 138.7 13.2 160 472-672 64-223 (457)
98 2xot_A Amphoterin-induced prot 99.4 7.2E-13 2.5E-17 139.3 7.7 129 471-610 38-174 (361)
99 1ziw_A TOLL-like receptor 3; i 99.3 1.5E-12 5.1E-17 149.0 10.8 173 475-672 7-182 (680)
100 4g8a_A TOLL-like receptor 4; l 99.3 1.5E-12 5E-17 147.6 10.6 139 483-643 42-183 (635)
101 3oja_A Leucine-rich immune mol 99.3 1E-12 3.4E-17 143.8 8.8 173 471-672 33-225 (487)
102 2qby_B CDC6 homolog 3, cell di 99.3 1.5E-11 5.1E-16 130.4 17.4 282 137-424 20-341 (384)
103 3qfl_A MLA10; coiled-coil, (CC 99.3 1.1E-12 3.7E-17 112.2 6.6 54 1-54 28-83 (115)
104 2v1u_A Cell division control p 99.3 3.1E-11 1E-15 128.0 19.4 201 136-343 18-245 (387)
105 3bz5_A Internalin-J, INLJ; leu 99.3 4.9E-12 1.7E-16 137.1 13.5 161 470-672 83-244 (457)
106 1h6t_A Internalin B; cell adhe 99.3 4.8E-12 1.7E-16 128.7 12.6 144 471-643 67-210 (291)
107 2ast_B S-phase kinase-associat 99.3 3E-13 1E-17 140.7 3.7 182 472-673 70-259 (336)
108 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2.4E-12 8.3E-17 143.8 11.2 127 470-611 50-181 (562)
109 1o6v_A Internalin A; bacterial 99.3 6.9E-12 2.3E-16 136.7 14.4 166 471-671 220-385 (466)
110 1w8a_A SLIT protein; signaling 99.3 2.4E-12 8.2E-17 122.4 8.6 126 475-612 11-139 (192)
111 3o53_A Protein LRIM1, AGAP0063 99.3 1.9E-12 6.5E-17 133.5 8.3 173 471-672 57-248 (317)
112 2xot_A Amphoterin-induced prot 99.3 2.9E-12 9.8E-17 134.7 9.5 174 475-672 21-200 (361)
113 2ell_A Acidic leucine-rich nuc 99.3 1.9E-12 6.4E-17 120.2 7.1 131 493-643 22-157 (168)
114 2z63_A TOLL-like receptor 4, v 99.3 2.4E-12 8.1E-17 144.1 8.9 178 470-672 345-529 (570)
115 2je0_A Acidic leucine-rich nuc 99.3 7.9E-13 2.7E-17 120.1 3.8 108 494-613 16-127 (149)
116 3cvr_A Invasion plasmid antige 99.3 4.9E-12 1.7E-16 139.9 10.7 159 471-672 79-241 (571)
117 3o53_A Protein LRIM1, AGAP0063 99.3 4.7E-13 1.6E-17 138.1 2.0 148 472-644 99-248 (317)
118 2chg_A Replication factor C sm 99.3 1.4E-10 4.8E-15 112.5 18.8 186 137-348 17-205 (226)
119 2ca6_A RAN GTPase-activating p 99.3 4E-13 1.4E-17 142.7 0.5 183 471-672 93-314 (386)
120 2qby_A CDC6 homolog 1, cell di 99.3 2.7E-11 9.4E-16 128.2 14.3 205 135-346 18-244 (386)
121 3g06_A SSPH2 (leucine-rich rep 99.3 1.3E-11 4.6E-16 138.1 12.4 119 470-612 59-194 (622)
122 3g06_A SSPH2 (leucine-rich rep 99.3 2.5E-11 8.6E-16 135.8 14.2 117 470-610 79-212 (622)
123 2o6r_A Variable lymphocyte rec 99.3 8.2E-12 2.8E-16 116.9 8.3 125 474-611 9-136 (177)
124 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4E-16 117.6 9.4 122 475-610 13-137 (193)
125 1dce_A Protein (RAB geranylger 99.3 7.7E-12 2.6E-16 138.9 9.4 118 474-605 443-566 (567)
126 1m9s_A Internalin B; cell inva 99.3 1.6E-11 5.5E-16 137.2 11.8 144 471-643 64-207 (605)
127 1a9n_A U2A', U2A'; complex (nu 99.2 8.9E-12 3.1E-16 116.6 7.4 111 490-613 14-127 (176)
128 3oja_A Leucine-rich immune mol 99.2 1.4E-11 4.9E-16 134.7 9.6 102 495-608 120-223 (487)
129 1jl5_A Outer protein YOPM; leu 99.2 5.7E-11 2E-15 128.6 13.8 117 471-610 90-206 (454)
130 1dce_A Protein (RAB geranylger 99.2 1.3E-11 4.5E-16 137.0 8.6 104 496-613 442-547 (567)
131 2ca6_A RAN GTPase-activating p 99.2 3.5E-12 1.2E-16 135.4 3.6 185 471-672 59-285 (386)
132 1jl5_A Outer protein YOPM; leu 99.2 5.2E-12 1.8E-16 136.8 4.2 126 471-611 10-165 (454)
133 2r9u_A Variable lymphocyte rec 99.2 2.8E-11 9.6E-16 112.9 7.4 108 475-595 15-124 (174)
134 3cvr_A Invasion plasmid antige 99.2 6.3E-11 2.1E-15 131.0 11.3 158 473-672 60-218 (571)
135 1ds9_A Outer arm dynein; leuci 99.2 5.7E-13 1.9E-17 127.4 -5.1 111 486-610 39-151 (198)
136 2wfh_A SLIT homolog 2 protein 99.2 7.2E-11 2.4E-15 112.1 9.4 106 470-584 29-136 (193)
137 1ds9_A Outer arm dynein; leuci 99.1 8.8E-13 3E-17 126.1 -5.1 150 497-667 25-180 (198)
138 1w8a_A SLIT protein; signaling 99.1 1.2E-10 4.2E-15 110.4 9.1 112 470-591 27-142 (192)
139 4ay9_X Follicle-stimulating ho 99.1 8E-11 2.7E-15 123.1 8.5 133 470-612 28-167 (350)
140 3goz_A Leucine-rich repeat-con 99.1 2.8E-11 9.6E-16 127.2 5.0 182 473-672 52-264 (362)
141 1sxj_B Activator 1 37 kDa subu 99.1 7E-10 2.4E-14 114.4 14.6 185 137-347 21-210 (323)
142 3g39_A Variable lymphocyte rec 99.1 1.1E-10 3.8E-15 108.4 7.0 99 475-584 12-112 (170)
143 3goz_A Leucine-rich repeat-con 99.1 3.2E-11 1.1E-15 126.7 3.4 183 472-672 80-295 (362)
144 2r9u_A Variable lymphocyte rec 99.1 1.6E-10 5.6E-15 107.7 7.0 103 497-613 14-119 (174)
145 1hqc_A RUVB; extended AAA-ATPa 99.1 6.2E-10 2.1E-14 114.9 12.0 182 137-350 12-214 (324)
146 2o6r_A Variable lymphocyte rec 99.0 3.7E-10 1.3E-14 105.5 8.9 112 470-591 26-140 (177)
147 4ay9_X Follicle-stimulating ho 99.0 4.8E-10 1.6E-14 117.2 9.1 180 471-671 53-256 (350)
148 1z7x_W Ribonuclease inhibitor; 99.0 4.1E-11 1.4E-15 130.2 0.2 183 472-672 170-381 (461)
149 3g39_A Variable lymphocyte rec 99.0 6.3E-10 2.2E-14 103.2 7.5 104 496-613 10-116 (170)
150 1z7x_W Ribonuclease inhibitor; 99.0 1.2E-10 4.1E-15 126.5 2.5 83 473-564 29-126 (461)
151 1iqp_A RFCS; clamp loader, ext 98.9 4.4E-09 1.5E-13 108.6 13.2 188 137-350 25-215 (327)
152 3te6_A Regulatory protein SIR3 98.8 4.5E-08 1.6E-12 99.1 15.2 171 139-315 22-213 (318)
153 1jr3_A DNA polymerase III subu 98.8 4.8E-08 1.6E-12 102.8 15.9 196 137-348 16-222 (373)
154 2ifg_A High affinity nerve gro 98.8 8.8E-09 3E-13 107.3 8.3 99 476-584 12-113 (347)
155 2chq_A Replication factor C sm 98.8 9E-08 3.1E-12 98.2 14.9 183 137-348 17-205 (319)
156 3ogk_B Coronatine-insensitive 98.7 4.4E-09 1.5E-13 118.0 4.9 153 493-669 162-326 (592)
157 2ifg_A High affinity nerve gro 98.7 1.9E-08 6.4E-13 104.8 7.7 101 499-612 12-116 (347)
158 3ogk_B Coronatine-insensitive 98.7 1.3E-08 4.4E-13 114.2 6.8 174 471-669 163-350 (592)
159 1sxj_D Activator 1 41 kDa subu 98.6 5.8E-07 2E-11 93.6 15.6 195 137-347 37-235 (353)
160 3un9_A NLR family member X1; l 98.6 3.5E-09 1.2E-13 111.2 -1.5 156 471-644 71-250 (372)
161 1jbk_A CLPB protein; beta barr 98.6 2E-07 7E-12 87.5 10.5 151 137-309 22-194 (195)
162 2p1m_B Transport inhibitor res 98.6 2.8E-08 9.6E-13 111.4 5.0 127 472-606 105-242 (594)
163 3bos_A Putative DNA replicatio 98.5 1.5E-07 5E-12 92.3 8.3 175 137-348 28-218 (242)
164 3sb4_A Hypothetical leucine ri 98.5 2.4E-07 8.1E-12 95.7 8.4 98 550-667 225-327 (329)
165 3h4m_A Proteasome-activating n 98.4 3.5E-06 1.2E-10 84.8 16.3 187 135-346 15-230 (285)
166 3uk6_A RUVB-like 2; hexameric 98.4 2.3E-06 7.8E-11 89.7 15.5 197 136-347 43-303 (368)
167 1sxj_E Activator 1 40 kDa subu 98.4 1.3E-06 4.4E-11 91.1 13.4 197 137-348 14-238 (354)
168 2z4s_A Chromosomal replication 98.4 2.5E-06 8.6E-11 91.3 15.9 162 164-346 130-305 (440)
169 2ra8_A Uncharacterized protein 98.4 1.2E-07 4.2E-12 98.6 5.1 166 490-672 134-318 (362)
170 2p1m_B Transport inhibitor res 98.4 5.2E-08 1.8E-12 109.2 2.2 108 492-609 102-221 (594)
171 3pvs_A Replication-associated 98.4 2E-06 7E-11 91.9 14.4 179 137-348 26-216 (447)
172 3u61_B DNA polymerase accessor 98.4 3.2E-06 1.1E-10 86.9 14.8 178 137-347 26-216 (324)
173 3pfi_A Holliday junction ATP-d 98.4 3.9E-06 1.3E-10 86.8 14.5 179 137-348 29-228 (338)
174 1sxj_A Activator 1 95 kDa subu 98.3 2.5E-06 8.5E-11 93.5 12.8 195 137-347 39-253 (516)
175 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.5E-05 5.2E-10 78.9 16.9 188 137-347 6-222 (262)
176 3sb4_A Hypothetical leucine ri 98.3 3.4E-07 1.2E-11 94.4 4.6 82 573-671 225-307 (329)
177 1d2n_A N-ethylmaleimide-sensit 98.3 1.5E-05 5.1E-10 79.6 16.3 196 137-364 33-259 (272)
178 3un9_A NLR family member X1; l 98.3 1.7E-07 6E-12 98.2 1.8 131 471-612 100-252 (372)
179 3syl_A Protein CBBX; photosynt 98.3 5.6E-06 1.9E-10 84.4 12.9 160 138-315 32-219 (309)
180 1a5t_A Delta prime, HOLB; zinc 98.3 1.8E-05 6E-10 81.6 16.6 172 143-347 8-205 (334)
181 1sxj_C Activator 1 40 kDa subu 98.2 1.6E-05 5.5E-10 82.2 16.0 184 137-346 25-211 (340)
182 1l8q_A Chromosomal replication 98.2 2.1E-05 7.3E-10 80.7 15.8 156 164-343 37-204 (324)
183 3eie_A Vacuolar protein sortin 98.2 4.9E-05 1.7E-09 77.9 17.8 184 136-347 17-228 (322)
184 3n70_A Transport activator; si 98.1 4.9E-06 1.7E-10 74.5 8.2 114 138-282 2-115 (145)
185 2p65_A Hypothetical protein PF 98.1 4.1E-06 1.4E-10 78.0 8.1 45 137-187 22-66 (187)
186 2qp9_X Vacuolar protein sortin 98.1 6E-05 2.1E-09 78.2 17.5 185 137-347 51-261 (355)
187 3d8b_A Fidgetin-like protein 1 98.1 5E-05 1.7E-09 79.0 16.8 188 137-348 84-296 (357)
188 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00014 4.7E-09 74.4 19.5 188 136-348 11-224 (322)
189 3ec2_A DNA replication protein 98.1 5.5E-06 1.9E-10 77.1 8.2 120 143-282 20-142 (180)
190 3b9p_A CG5977-PA, isoform A; A 98.1 0.00015 5E-09 73.3 19.5 185 136-347 20-233 (297)
191 2zan_A Vacuolar protein sortin 98.0 0.00022 7.4E-09 76.4 18.4 189 136-347 133-345 (444)
192 3rw6_A Nuclear RNA export fact 98.0 1.5E-06 5E-11 85.9 1.4 81 517-606 166-258 (267)
193 3co5_A Putative two-component 98.0 6E-06 2E-10 73.7 5.2 109 138-281 5-114 (143)
194 2gno_A DNA polymerase III, gam 97.9 6.4E-05 2.2E-09 76.0 12.7 147 142-313 2-152 (305)
195 3vfd_A Spastin; ATPase, microt 97.9 0.00022 7.7E-09 75.0 17.2 188 136-347 114-326 (389)
196 3cf0_A Transitional endoplasmi 97.9 0.00018 6.3E-09 72.7 15.1 182 136-342 14-223 (301)
197 2ra8_A Uncharacterized protein 97.8 2E-05 6.9E-10 81.8 7.1 135 470-610 170-318 (362)
198 2w58_A DNAI, primosome compone 97.8 1.6E-05 5.4E-10 75.5 5.2 125 138-282 26-158 (202)
199 3hu3_A Transitional endoplasmi 97.8 0.00024 8.3E-09 76.6 14.9 185 137-346 204-414 (489)
200 1io0_A Tropomodulin; LRR prote 97.8 1.2E-05 4.1E-10 75.2 4.0 111 489-610 30-162 (185)
201 4fcw_A Chaperone protein CLPB; 97.8 0.00012 4E-09 74.5 11.5 136 138-282 18-169 (311)
202 4b4t_K 26S protease regulatory 97.8 0.00039 1.3E-08 73.1 15.5 179 137-340 172-379 (428)
203 1qvr_A CLPB protein; coiled co 97.8 0.0001 3.5E-09 85.8 12.1 154 137-312 170-344 (854)
204 4fdw_A Leucine rich hypothetic 97.8 7.5E-05 2.6E-09 78.9 10.0 121 471-606 179-307 (401)
205 4b4t_J 26S protease regulatory 97.8 0.00077 2.6E-08 69.9 17.3 179 137-340 148-354 (405)
206 3pxg_A Negative regulator of g 97.7 5.6E-05 1.9E-09 81.6 9.1 147 137-313 180-338 (468)
207 4fdw_A Leucine rich hypothetic 97.7 0.00015 5.2E-09 76.5 10.5 106 490-610 175-282 (401)
208 2bjv_A PSP operon transcriptio 97.6 9.7E-05 3.3E-09 73.3 8.4 132 137-282 6-150 (265)
209 1in4_A RUVB, holliday junction 97.6 0.001 3.5E-08 68.3 16.0 177 137-347 25-223 (334)
210 2c9o_A RUVB-like 1; hexameric 97.6 0.0005 1.7E-08 73.9 13.8 97 246-347 298-410 (456)
211 1ofh_A ATP-dependent HSL prote 97.6 0.00041 1.4E-08 70.3 12.5 51 137-187 15-73 (310)
212 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00047 1.6E-08 79.3 14.2 155 137-313 186-362 (758)
213 1lv7_A FTSH; alpha/beta domain 97.6 0.0013 4.6E-08 64.6 15.5 186 136-346 11-224 (257)
214 4b4t_L 26S protease subunit RP 97.5 0.0016 5.6E-08 68.5 16.4 179 137-340 181-387 (437)
215 2kjq_A DNAA-related protein; s 97.5 5.6E-05 1.9E-09 67.7 4.6 86 165-282 37-124 (149)
216 1ojl_A Transcriptional regulat 97.5 0.00027 9.2E-09 71.6 10.0 158 137-310 2-187 (304)
217 3rw6_A Nuclear RNA export fact 97.5 5.1E-05 1.8E-09 74.8 4.4 80 492-581 167-258 (267)
218 4b4t_H 26S protease regulatory 97.5 0.0019 6.6E-08 67.9 16.4 179 137-340 209-415 (467)
219 1io0_A Tropomodulin; LRR prote 97.5 6.5E-05 2.2E-09 70.1 4.0 105 471-584 35-161 (185)
220 3pxi_A Negative regulator of g 97.4 0.00082 2.8E-08 77.2 13.5 148 137-313 180-338 (758)
221 3pxi_A Negative regulator of g 97.4 0.00046 1.6E-08 79.3 10.7 156 137-313 491-675 (758)
222 4b4t_M 26S protease regulatory 97.4 0.0019 6.6E-08 67.9 14.3 179 137-340 181-387 (434)
223 2r44_A Uncharacterized protein 97.3 0.0017 6E-08 66.4 13.5 151 137-314 27-199 (331)
224 3e4g_A ATP synthase subunit S, 97.3 0.00012 4E-09 67.0 4.1 81 521-609 61-149 (176)
225 2ce7_A Cell division protein F 97.3 0.0048 1.6E-07 66.0 16.7 179 137-340 16-221 (476)
226 3e4g_A ATP synthase subunit S, 97.3 0.00031 1.1E-08 64.2 5.8 99 542-650 52-156 (176)
227 2cvh_A DNA repair and recombin 97.3 0.0014 4.9E-08 62.5 10.9 86 163-254 19-116 (220)
228 4b4t_I 26S protease regulatory 97.1 0.0032 1.1E-07 65.5 12.4 179 137-340 182-388 (437)
229 2r62_A Cell division protease 97.1 0.00012 4E-09 72.8 1.5 52 136-187 10-67 (268)
230 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0012 4.2E-08 75.8 8.8 133 137-282 458-607 (758)
231 3cf2_A TER ATPase, transitiona 97.0 0.0055 1.9E-07 69.5 13.9 180 137-341 204-408 (806)
232 3t15_A Ribulose bisphosphate c 97.0 0.005 1.7E-07 61.7 12.1 25 163-187 35-59 (293)
233 3m6a_A ATP-dependent protease 96.9 0.0021 7.3E-08 70.4 9.8 162 137-313 81-266 (543)
234 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00042 1.4E-08 69.5 3.4 70 163-254 122-193 (331)
235 1qvr_A CLPB protein; coiled co 96.9 0.003 1E-07 73.5 10.7 135 138-282 559-710 (854)
236 2qgz_A Helicase loader, putati 96.9 0.0005 1.7E-08 69.6 3.6 41 144-187 135-175 (308)
237 1ixz_A ATP-dependent metallopr 96.8 0.009 3.1E-07 58.4 12.1 180 136-340 15-221 (254)
238 1jr3_D DNA polymerase III, del 96.8 0.027 9.1E-07 57.8 16.1 158 163-346 17-184 (343)
239 2x8a_A Nuclear valosin-contain 96.8 0.023 7.8E-07 56.3 14.9 155 137-313 10-191 (274)
240 1iy2_A ATP-dependent metallopr 96.7 0.02 6.8E-07 56.8 13.9 181 135-340 38-245 (278)
241 1um8_A ATP-dependent CLP prote 96.6 0.014 4.8E-07 60.8 12.4 23 165-187 73-95 (376)
242 2dhr_A FTSH; AAA+ protein, hex 96.5 0.014 4.8E-07 62.8 12.0 177 135-340 29-236 (499)
243 1g8p_A Magnesium-chelatase 38 96.5 0.0064 2.2E-07 62.6 9.1 45 137-187 24-68 (350)
244 1ye8_A Protein THEP1, hypothet 96.4 0.023 8E-07 52.1 11.2 22 166-187 2-23 (178)
245 1n0w_A DNA repair protein RAD5 96.4 0.0097 3.3E-07 57.6 8.9 90 163-253 23-129 (243)
246 2b8t_A Thymidine kinase; deoxy 96.3 0.0029 1E-07 60.4 4.8 113 163-283 11-126 (223)
247 1ypw_A Transitional endoplasmi 96.3 0.014 4.6E-07 67.2 11.2 157 137-313 204-385 (806)
248 2cbz_A Multidrug resistance-as 96.2 0.03 1E-06 54.0 11.5 54 234-287 136-193 (237)
249 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0098 3.4E-07 57.0 8.0 115 164-283 23-168 (235)
250 1v5w_A DMC1, meiotic recombina 96.2 0.019 6.4E-07 59.0 10.5 57 163-220 121-181 (343)
251 2i1q_A DNA repair and recombin 96.2 0.013 4.4E-07 59.7 9.2 57 163-220 97-167 (322)
252 2pze_A Cystic fibrosis transme 96.2 0.059 2E-06 51.6 13.2 56 233-288 138-195 (229)
253 1rz3_A Hypothetical protein rb 96.1 0.0057 2E-07 57.5 5.4 42 142-186 3-44 (201)
254 3hr8_A Protein RECA; alpha and 96.1 0.013 4.5E-07 60.0 8.5 85 163-254 60-150 (356)
255 2z43_A DNA repair and recombin 96.0 0.023 7.7E-07 57.8 9.7 57 163-220 106-166 (324)
256 1g5t_A COB(I)alamin adenosyltr 96.0 0.0065 2.2E-07 56.3 5.0 118 165-284 29-164 (196)
257 2ff7_A Alpha-hemolysin translo 96.0 0.031 1.1E-06 54.3 10.1 55 233-287 153-208 (247)
258 1pzn_A RAD51, DNA repair and r 95.9 0.021 7.1E-07 58.7 9.0 91 163-254 130-242 (349)
259 1xp8_A RECA protein, recombina 95.9 0.02 6.8E-07 59.1 8.8 84 163-253 73-162 (366)
260 3io5_A Recombination and repai 95.9 0.03 1E-06 55.9 9.5 82 166-254 30-122 (333)
261 1vpl_A ABC transporter, ATP-bi 95.8 0.064 2.2E-06 52.3 11.9 56 233-288 154-211 (256)
262 2zr9_A Protein RECA, recombina 95.8 0.021 7E-07 58.7 8.3 85 163-254 60-150 (349)
263 2px0_A Flagellar biosynthesis 95.8 0.017 5.7E-07 57.9 7.4 87 163-252 104-191 (296)
264 1cr0_A DNA primase/helicase; R 95.6 0.033 1.1E-06 55.7 9.2 24 164-187 35-58 (296)
265 2pjz_A Hypothetical protein ST 95.6 0.079 2.7E-06 51.9 11.5 119 165-287 31-189 (263)
266 2ixe_A Antigen peptide transpo 95.6 0.08 2.7E-06 52.1 11.6 56 233-288 164-222 (271)
267 1u94_A RECA protein, recombina 95.6 0.017 5.7E-07 59.4 6.8 84 163-253 62-151 (356)
268 3tui_C Methionine import ATP-b 95.6 0.06 2.1E-06 55.1 10.8 59 230-288 168-229 (366)
269 4g1u_C Hemin import ATP-bindin 95.6 0.071 2.4E-06 52.4 11.0 23 164-186 37-59 (266)
270 3c8u_A Fructokinase; YP_612366 95.5 0.0099 3.4E-07 56.2 4.5 38 145-186 7-44 (208)
271 3rfe_A Platelet glycoprotein I 95.5 0.013 4.4E-07 50.7 4.7 47 536-584 16-65 (130)
272 1ji0_A ABC transporter; ATP bi 95.5 0.073 2.5E-06 51.4 10.6 22 165-186 33-54 (240)
273 3ice_A Transcription terminati 95.4 0.0098 3.4E-07 60.9 4.0 53 147-205 162-215 (422)
274 3nbx_X ATPase RAVA; AAA+ ATPas 95.3 0.0091 3.1E-07 64.3 4.0 42 138-187 23-64 (500)
275 3tqc_A Pantothenate kinase; bi 95.3 0.033 1.1E-06 56.2 7.8 45 140-186 70-114 (321)
276 2orw_A Thymidine kinase; TMTK, 95.3 0.0023 8E-08 59.3 -0.6 22 165-186 4-25 (184)
277 2bbs_A Cystic fibrosis transme 95.3 0.15 5.2E-06 50.6 12.4 55 234-288 168-224 (290)
278 2nq2_C Hypothetical ABC transp 95.2 0.084 2.9E-06 51.4 10.0 123 165-287 32-193 (253)
279 3lw7_A Adenylate kinase relate 95.2 0.0091 3.1E-07 54.3 3.0 20 165-184 2-21 (179)
280 4a74_A DNA repair and recombin 95.2 0.09 3.1E-06 50.1 10.2 47 163-209 24-74 (231)
281 1zp6_A Hypothetical protein AT 95.1 0.012 4E-07 54.7 3.6 25 163-187 8-32 (191)
282 3dm5_A SRP54, signal recogniti 95.1 0.29 9.8E-06 51.5 14.5 24 163-186 99-122 (443)
283 3fvq_A Fe(3+) IONS import ATP- 95.1 0.13 4.4E-06 52.6 11.4 59 230-288 143-204 (359)
284 1qhx_A CPT, protein (chloramph 95.0 0.0099 3.4E-07 54.5 2.8 22 165-186 4-25 (178)
285 3kb2_A SPBC2 prophage-derived 95.0 0.01 3.5E-07 53.9 2.8 22 165-186 2-23 (173)
286 3nh6_A ATP-binding cassette SU 94.9 0.058 2E-06 54.0 8.3 23 164-186 80-102 (306)
287 1ly1_A Polynucleotide kinase; 94.9 0.013 4.4E-07 53.7 3.2 22 165-186 3-24 (181)
288 3rlf_A Maltose/maltodextrin im 94.9 0.074 2.5E-06 54.9 9.1 22 165-186 30-51 (381)
289 3lda_A DNA repair protein RAD5 94.9 0.074 2.5E-06 55.5 9.3 57 163-220 177-237 (400)
290 3hws_A ATP-dependent CLP prote 94.9 0.017 5.8E-07 59.8 4.3 50 138-187 16-74 (363)
291 2it1_A 362AA long hypothetical 94.9 0.13 4.6E-06 52.7 10.9 23 164-186 29-51 (362)
292 2ck3_D ATP synthase subunit be 94.9 0.088 3E-06 55.5 9.6 99 148-252 142-262 (482)
293 3vaa_A Shikimate kinase, SK; s 94.8 0.012 4.2E-07 55.1 2.8 23 164-186 25-47 (199)
294 3uie_A Adenylyl-sulfate kinase 94.8 0.017 5.9E-07 54.1 3.7 25 163-187 24-48 (200)
295 1odf_A YGR205W, hypothetical 3 94.8 0.016 5.5E-07 57.8 3.6 81 162-242 29-117 (290)
296 2yyz_A Sugar ABC transporter, 94.8 0.14 4.7E-06 52.5 10.7 125 164-288 29-199 (359)
297 1z47_A CYSA, putative ABC-tran 94.7 0.14 4.6E-06 52.4 10.5 58 231-288 151-211 (355)
298 1kgd_A CASK, peripheral plasma 94.7 0.014 4.8E-07 53.7 2.9 23 164-186 5-27 (180)
299 2ga8_A Hypothetical 39.9 kDa p 94.7 0.024 8.3E-07 57.6 4.7 45 140-186 2-46 (359)
300 3bh0_A DNAB-like replicative h 94.7 0.23 7.8E-06 50.1 12.0 53 163-219 67-119 (315)
301 3cf2_A TER ATPase, transitiona 94.6 0.16 5.5E-06 57.6 11.7 54 134-187 474-534 (806)
302 1kag_A SKI, shikimate kinase I 94.6 0.013 4.4E-07 53.3 2.4 22 165-186 5-26 (173)
303 2rhm_A Putative kinase; P-loop 94.6 0.019 6.6E-07 53.2 3.6 24 163-186 4-27 (193)
304 1gvn_B Zeta; postsegregational 94.6 0.026 9E-07 56.2 4.7 25 162-186 31-55 (287)
305 3trf_A Shikimate kinase, SK; a 94.6 0.015 5.2E-07 53.5 2.8 23 164-186 5-27 (185)
306 1nks_A Adenylate kinase; therm 94.6 0.019 6.3E-07 53.2 3.3 23 165-187 2-24 (194)
307 1knq_A Gluconate kinase; ALFA/ 94.5 0.022 7.5E-07 52.0 3.7 24 163-186 7-30 (175)
308 1v43_A Sugar-binding transport 94.5 0.15 5.1E-06 52.6 10.2 125 164-288 37-207 (372)
309 3d31_A Sulfate/molybdate ABC t 94.5 0.13 4.5E-06 52.4 9.8 122 165-288 27-193 (348)
310 1fx0_B ATP synthase beta chain 94.4 0.099 3.4E-06 55.3 8.7 99 148-252 154-275 (498)
311 4gp7_A Metallophosphoesterase; 94.4 0.018 6.2E-07 52.4 2.8 24 163-186 8-31 (171)
312 4eun_A Thermoresistant glucoki 94.4 0.019 6.5E-07 53.8 3.0 24 163-186 28-51 (200)
313 3tr0_A Guanylate kinase, GMP k 94.4 0.02 6.9E-07 53.7 3.1 23 164-186 7-29 (205)
314 2p5t_B PEZT; postsegregational 94.4 0.031 1.1E-06 54.6 4.5 40 146-186 15-54 (253)
315 1ex7_A Guanylate kinase; subst 94.4 0.015 5E-07 53.8 2.0 22 165-186 2-23 (186)
316 3asz_A Uridine kinase; cytidin 94.3 0.024 8.2E-07 53.5 3.6 24 163-186 5-28 (211)
317 3tau_A Guanylate kinase, GMP k 94.3 0.021 7E-07 54.0 3.1 25 163-187 7-31 (208)
318 2bdt_A BH3686; alpha-beta prot 94.3 0.023 7.8E-07 52.6 3.3 22 165-186 3-24 (189)
319 1vma_A Cell division protein F 94.3 0.13 4.4E-06 51.6 9.0 107 144-253 82-196 (306)
320 1uj2_A Uridine-cytidine kinase 94.3 0.022 7.5E-07 55.6 3.3 24 163-186 21-44 (252)
321 2qt1_A Nicotinamide riboside k 94.3 0.026 9E-07 53.1 3.8 25 163-187 20-44 (207)
322 3t61_A Gluconokinase; PSI-biol 94.2 0.017 5.9E-07 54.1 2.4 24 164-187 18-41 (202)
323 1kht_A Adenylate kinase; phosp 94.2 0.021 7.3E-07 52.7 2.9 22 165-186 4-25 (192)
324 1sky_E F1-ATPase, F1-ATP synth 94.2 0.07 2.4E-06 56.3 7.1 88 165-253 152-255 (473)
325 1uf9_A TT1252 protein; P-loop, 94.2 0.027 9.1E-07 52.7 3.6 24 163-186 7-30 (203)
326 4h09_A Hypothetical leucine ri 94.2 0.13 4.5E-06 53.3 9.2 103 490-606 235-340 (379)
327 2yvu_A Probable adenylyl-sulfa 94.2 0.03 1E-06 51.6 3.8 25 163-187 12-36 (186)
328 2ze6_A Isopentenyl transferase 94.1 0.024 8.2E-07 55.4 3.2 23 165-187 2-24 (253)
329 2j41_A Guanylate kinase; GMP, 94.1 0.023 7.8E-07 53.3 3.0 24 164-187 6-29 (207)
330 3a00_A Guanylate kinase, GMP k 94.1 0.019 6.6E-07 53.1 2.3 23 165-187 2-24 (186)
331 2if2_A Dephospho-COA kinase; a 94.1 0.025 8.5E-07 53.1 3.1 21 166-186 3-23 (204)
332 3iij_A Coilin-interacting nucl 94.1 0.019 6.4E-07 52.7 2.2 23 164-186 11-33 (180)
333 2jaq_A Deoxyguanosine kinase; 94.1 0.024 8.1E-07 53.1 2.9 21 166-186 2-22 (205)
334 1ukz_A Uridylate kinase; trans 94.1 0.029 9.8E-07 52.6 3.5 24 163-186 14-37 (203)
335 3fwy_A Light-independent proto 94.1 0.027 9.1E-07 56.9 3.4 25 162-186 46-70 (314)
336 1tev_A UMP-CMP kinase; ploop, 94.1 0.026 9E-07 52.3 3.2 23 164-186 3-25 (196)
337 1y63_A LMAJ004144AAA protein; 94.1 0.026 9.1E-07 52.0 3.2 24 163-186 9-32 (184)
338 3gd7_A Fusion complex of cysti 94.0 0.18 6.1E-06 52.3 9.7 23 164-186 47-69 (390)
339 1zuh_A Shikimate kinase; alpha 94.0 0.023 8E-07 51.4 2.7 24 163-186 6-29 (168)
340 2c95_A Adenylate kinase 1; tra 94.0 0.026 8.8E-07 52.4 3.1 23 164-186 9-31 (196)
341 2qor_A Guanylate kinase; phosp 94.0 0.02 6.9E-07 53.8 2.3 25 163-187 11-35 (204)
342 1jjv_A Dephospho-COA kinase; P 94.0 0.03 1E-06 52.7 3.4 22 165-186 3-24 (206)
343 3cm0_A Adenylate kinase; ATP-b 93.9 0.031 1.1E-06 51.4 3.4 23 164-186 4-26 (186)
344 1cke_A CK, MSSA, protein (cyti 93.9 0.026 8.9E-07 53.9 3.0 22 165-186 6-27 (227)
345 3jvv_A Twitching mobility prot 93.9 0.036 1.2E-06 56.9 4.1 109 165-286 124-234 (356)
346 1via_A Shikimate kinase; struc 93.9 0.023 7.9E-07 51.8 2.4 21 166-186 6-26 (175)
347 1lvg_A Guanylate kinase, GMP k 93.8 0.023 8E-07 53.1 2.3 22 165-186 5-26 (198)
348 3b5x_A Lipid A export ATP-bind 93.8 0.27 9.3E-06 54.2 11.3 24 163-186 368-391 (582)
349 3umf_A Adenylate kinase; rossm 93.8 0.033 1.1E-06 52.8 3.4 26 162-187 27-52 (217)
350 3l0o_A Transcription terminati 93.8 0.24 8.1E-06 50.7 9.7 38 145-187 161-198 (427)
351 3a4m_A L-seryl-tRNA(SEC) kinas 93.8 0.031 1.1E-06 54.8 3.3 23 164-186 4-26 (260)
352 2iyv_A Shikimate kinase, SK; t 93.8 0.021 7.3E-07 52.5 1.9 21 166-186 4-24 (184)
353 4a1f_A DNAB helicase, replicat 93.8 0.14 4.7E-06 52.0 8.1 54 164-221 46-99 (338)
354 1qf9_A UMP/CMP kinase, protein 93.8 0.034 1.2E-06 51.4 3.3 24 163-186 5-28 (194)
355 3kl4_A SRP54, signal recogniti 93.7 0.34 1.2E-05 50.9 11.2 25 163-187 96-120 (433)
356 2plr_A DTMP kinase, probable t 93.7 0.034 1.2E-06 52.3 3.3 23 165-187 5-27 (213)
357 2hf9_A Probable hydrogenase ni 93.7 0.049 1.7E-06 51.9 4.4 25 163-187 37-61 (226)
358 2bwj_A Adenylate kinase 5; pho 93.7 0.033 1.1E-06 51.8 3.1 23 164-186 12-34 (199)
359 3upu_A ATP-dependent DNA helic 93.7 0.043 1.5E-06 58.7 4.4 104 166-281 47-163 (459)
360 3aez_A Pantothenate kinase; tr 93.6 0.037 1.3E-06 55.8 3.5 24 163-186 89-112 (312)
361 2cdn_A Adenylate kinase; phosp 93.6 0.034 1.2E-06 52.0 3.1 24 163-186 19-42 (201)
362 1xjc_A MOBB protein homolog; s 93.6 0.032 1.1E-06 50.5 2.8 25 163-187 3-27 (169)
363 1htw_A HI0065; nucleotide-bind 93.6 0.043 1.5E-06 49.2 3.6 24 163-186 32-55 (158)
364 3ney_A 55 kDa erythrocyte memb 93.6 0.035 1.2E-06 51.6 3.1 24 163-186 18-41 (197)
365 2bbw_A Adenylate kinase 4, AK4 93.6 0.033 1.1E-06 54.0 3.1 23 164-186 27-49 (246)
366 1e6c_A Shikimate kinase; phosp 93.6 0.025 8.7E-07 51.3 2.1 22 165-186 3-24 (173)
367 1sq5_A Pantothenate kinase; P- 93.6 0.071 2.4E-06 53.7 5.6 24 163-186 79-102 (308)
368 1znw_A Guanylate kinase, GMP k 93.6 0.034 1.2E-06 52.3 3.0 24 163-186 19-42 (207)
369 4fs7_A Uncharacterized protein 93.5 0.11 3.8E-06 54.2 7.2 118 472-606 253-373 (394)
370 3e70_C DPA, signal recognition 93.5 0.065 2.2E-06 54.3 5.2 26 162-187 127-152 (328)
371 2pt5_A Shikimate kinase, SK; a 93.5 0.035 1.2E-06 50.1 2.9 21 166-186 2-22 (168)
372 4akg_A Glutathione S-transfera 93.5 0.9 3.1E-05 58.4 16.3 190 167-393 1270-1509(2695)
373 2jeo_A Uridine-cytidine kinase 93.5 0.041 1.4E-06 53.4 3.5 24 163-186 24-47 (245)
374 2yhs_A FTSY, cell division pro 93.5 0.15 5.2E-06 54.2 8.1 42 163-207 292-333 (503)
375 2pt7_A CAG-ALFA; ATPase, prote 93.4 0.09 3.1E-06 53.4 6.1 105 165-284 172-276 (330)
376 3llm_A ATP-dependent RNA helic 93.4 0.24 8.2E-06 47.5 8.9 102 145-255 65-188 (235)
377 2pbr_A DTMP kinase, thymidylat 93.4 0.037 1.3E-06 51.3 2.9 21 166-186 2-22 (195)
378 1oxx_K GLCV, glucose, ABC tran 93.4 0.34 1.2E-05 49.5 10.3 23 164-186 31-53 (353)
379 2wsm_A Hydrogenase expression/ 93.4 0.049 1.7E-06 51.6 3.8 39 143-187 15-53 (221)
380 2grj_A Dephospho-COA kinase; T 93.4 0.047 1.6E-06 50.7 3.6 25 162-186 10-34 (192)
381 2xxa_A Signal recognition part 93.4 0.17 5.9E-06 53.3 8.3 24 163-186 99-122 (433)
382 1nn5_A Similar to deoxythymidy 93.4 0.04 1.4E-06 52.0 3.1 24 164-187 9-32 (215)
383 2j37_W Signal recognition part 93.4 0.38 1.3E-05 51.6 11.0 41 146-186 80-123 (504)
384 1z6g_A Guanylate kinase; struc 93.3 0.033 1.1E-06 53.0 2.4 23 164-186 23-45 (218)
385 1gtv_A TMK, thymidylate kinase 93.3 0.026 9E-07 53.3 1.7 22 166-187 2-23 (214)
386 1rj9_A FTSY, signal recognitio 93.3 0.041 1.4E-06 55.2 3.2 24 163-186 101-124 (304)
387 2wwf_A Thymidilate kinase, put 93.3 0.04 1.4E-06 51.9 3.0 24 164-187 10-33 (212)
388 4fs7_A Uncharacterized protein 93.3 0.41 1.4E-05 49.8 11.1 101 490-606 248-350 (394)
389 2ffh_A Protein (FFH); SRP54, s 93.2 0.22 7.7E-06 52.1 8.9 24 164-187 98-121 (425)
390 1ls1_A Signal recognition part 93.2 0.19 6.6E-06 50.1 8.0 24 164-187 98-121 (295)
391 1s96_A Guanylate kinase, GMP k 93.2 0.042 1.4E-06 52.3 3.0 25 163-187 15-39 (219)
392 1pgv_A TMD-1, tropomodulin TMD 93.2 0.044 1.5E-06 50.9 3.0 106 492-606 38-164 (197)
393 2vli_A Antibiotic resistance p 93.2 0.029 9.8E-07 51.5 1.8 23 164-186 5-27 (183)
394 4e22_A Cytidylate kinase; P-lo 93.2 0.043 1.5E-06 53.5 3.1 23 164-186 27-49 (252)
395 3e1s_A Exodeoxyribonuclease V, 93.2 0.095 3.2E-06 57.6 6.2 103 165-280 205-313 (574)
396 2pez_A Bifunctional 3'-phospho 93.2 0.049 1.7E-06 49.8 3.3 24 163-186 4-27 (179)
397 3rfe_A Platelet glycoprotein I 93.2 0.066 2.2E-06 46.2 3.9 53 554-610 11-66 (130)
398 1aky_A Adenylate kinase; ATP:A 93.1 0.042 1.4E-06 52.3 2.9 22 165-186 5-26 (220)
399 2f6r_A COA synthase, bifunctio 93.1 0.055 1.9E-06 53.7 3.8 24 163-186 74-97 (281)
400 3tlx_A Adenylate kinase 2; str 93.1 0.056 1.9E-06 52.3 3.8 24 163-186 28-51 (243)
401 2z0h_A DTMP kinase, thymidylat 93.1 0.045 1.5E-06 50.8 3.0 22 166-187 2-23 (197)
402 1zd8_A GTP:AMP phosphotransfer 93.0 0.047 1.6E-06 52.2 3.1 23 164-186 7-29 (227)
403 1m7g_A Adenylylsulfate kinase; 93.0 0.054 1.8E-06 51.1 3.4 25 163-187 24-48 (211)
404 1tue_A Replication protein E1; 93.0 0.063 2.2E-06 49.9 3.7 37 146-187 45-81 (212)
405 1pgv_A TMD-1, tropomodulin TMD 93.0 0.021 7E-07 53.1 0.4 87 512-607 32-134 (197)
406 3vr4_D V-type sodium ATPase su 93.0 0.1 3.5E-06 54.6 5.7 98 148-252 140-257 (465)
407 3fb4_A Adenylate kinase; psych 92.9 0.048 1.6E-06 51.6 3.0 21 166-186 2-22 (216)
408 2f1r_A Molybdopterin-guanine d 92.9 0.037 1.3E-06 50.3 2.1 23 165-187 3-25 (171)
409 2ged_A SR-beta, signal recogni 92.8 0.079 2.7E-06 48.8 4.2 25 163-187 47-71 (193)
410 3b9q_A Chloroplast SRP recepto 92.8 0.06 2.1E-06 53.9 3.6 24 163-186 99-122 (302)
411 3zvl_A Bifunctional polynucleo 92.8 0.25 8.7E-06 51.9 8.6 25 163-187 257-281 (416)
412 3dl0_A Adenylate kinase; phosp 92.8 0.052 1.8E-06 51.4 3.0 21 166-186 2-22 (216)
413 2i3b_A HCR-ntpase, human cance 92.8 0.046 1.6E-06 50.6 2.5 22 166-187 3-24 (189)
414 2v54_A DTMP kinase, thymidylat 92.8 0.053 1.8E-06 50.7 3.0 23 165-187 5-27 (204)
415 1zak_A Adenylate kinase; ATP:A 92.7 0.045 1.6E-06 52.1 2.5 23 164-186 5-27 (222)
416 1ny5_A Transcriptional regulat 92.7 0.59 2E-05 48.5 11.2 46 138-187 138-183 (387)
417 3j16_B RLI1P; ribosome recycli 92.7 0.55 1.9E-05 51.7 11.4 124 165-288 379-533 (608)
418 3tif_A Uncharacterized ABC tra 92.7 0.083 2.8E-06 50.8 4.3 23 164-186 31-53 (235)
419 1vht_A Dephospho-COA kinase; s 92.7 0.063 2.2E-06 50.9 3.4 23 164-186 4-26 (218)
420 3b60_A Lipid A export ATP-bind 92.7 0.3 1E-05 53.8 9.4 23 164-186 369-391 (582)
421 4gt6_A Cell surface protein; l 92.6 0.27 9.1E-06 51.3 8.5 57 546-606 283-341 (394)
422 2ehv_A Hypothetical protein PH 92.6 0.057 2E-06 52.2 3.1 24 163-186 29-52 (251)
423 2onk_A Molybdate/tungstate ABC 92.5 0.059 2E-06 52.0 3.0 22 165-186 25-46 (240)
424 2pcj_A ABC transporter, lipopr 92.5 0.062 2.1E-06 51.3 3.1 22 165-186 31-52 (224)
425 1q57_A DNA primase/helicase; d 92.5 0.36 1.2E-05 52.2 9.5 55 163-220 241-295 (503)
426 3p32_A Probable GTPase RV1496/ 92.5 0.1 3.5E-06 53.7 5.0 37 146-186 65-101 (355)
427 3gfo_A Cobalt import ATP-bindi 92.4 0.093 3.2E-06 51.7 4.3 22 165-186 35-56 (275)
428 3nwj_A ATSK2; P loop, shikimat 92.3 0.049 1.7E-06 52.9 2.2 22 165-186 49-70 (250)
429 3ake_A Cytidylate kinase; CMP 92.3 0.064 2.2E-06 50.2 3.0 21 166-186 4-24 (208)
430 3lnc_A Guanylate kinase, GMP k 92.3 0.045 1.5E-06 52.5 1.9 23 164-186 27-50 (231)
431 1b0u_A Histidine permease; ABC 92.3 0.098 3.3E-06 51.2 4.3 23 164-186 32-54 (262)
432 3bk7_A ABC transporter ATP-bin 92.3 0.59 2E-05 51.5 11.0 124 165-288 383-537 (607)
433 3be4_A Adenylate kinase; malar 92.3 0.066 2.2E-06 50.8 2.9 23 165-187 6-28 (217)
434 3d3q_A TRNA delta(2)-isopenten 92.3 0.069 2.3E-06 54.1 3.2 22 165-186 8-29 (340)
435 1g41_A Heat shock protein HSLU 92.2 0.11 3.6E-06 54.8 4.6 51 137-187 15-73 (444)
436 1e4v_A Adenylate kinase; trans 92.1 0.073 2.5E-06 50.3 3.1 21 166-186 2-22 (214)
437 1np6_A Molybdopterin-guanine d 92.1 0.068 2.3E-06 48.7 2.7 25 163-187 5-29 (174)
438 2wji_A Ferrous iron transport 92.1 0.11 3.7E-06 46.6 4.1 23 165-187 4-26 (165)
439 3k1j_A LON protease, ATP-depen 92.1 0.095 3.2E-06 58.2 4.4 43 137-187 41-83 (604)
440 3r20_A Cytidylate kinase; stru 92.1 0.073 2.5E-06 51.0 3.0 23 164-186 9-31 (233)
441 3sr0_A Adenylate kinase; phosp 92.0 0.075 2.6E-06 49.9 3.0 22 166-187 2-23 (206)
442 2og2_A Putative signal recogni 92.0 0.083 2.9E-06 54.1 3.5 24 163-186 156-179 (359)
443 2iw3_A Elongation factor 3A; a 92.0 1 3.5E-05 52.1 12.8 119 165-288 462-610 (986)
444 2xb4_A Adenylate kinase; ATP-b 92.0 0.074 2.5E-06 50.7 2.9 21 166-186 2-22 (223)
445 1j8m_F SRP54, signal recogniti 92.0 0.25 8.6E-06 49.2 7.0 24 164-187 98-121 (297)
446 3j16_B RLI1P; ribosome recycli 92.0 0.82 2.8E-05 50.3 11.6 24 163-186 102-125 (608)
447 3a8t_A Adenylate isopentenyltr 92.0 0.09 3.1E-06 53.1 3.6 25 163-187 39-63 (339)
448 3b85_A Phosphate starvation-in 91.9 0.059 2E-06 50.7 2.1 22 165-186 23-44 (208)
449 3gqb_B V-type ATP synthase bet 91.9 0.11 3.8E-06 54.3 4.3 100 148-252 136-260 (464)
450 1oix_A RAS-related protein RAB 91.9 0.11 3.6E-06 48.1 3.8 25 163-187 28-52 (191)
451 2fz4_A DNA repair protein RAD2 91.8 0.51 1.8E-05 45.2 8.8 101 167-281 111-227 (237)
452 3end_A Light-independent proto 91.8 0.089 3E-06 52.9 3.4 26 161-186 38-63 (307)
453 2vp4_A Deoxynucleoside kinase; 91.8 0.088 3E-06 50.4 3.3 25 162-186 18-42 (230)
454 3crm_A TRNA delta(2)-isopenten 91.8 0.084 2.9E-06 53.1 3.2 23 164-186 5-27 (323)
455 3hjn_A DTMP kinase, thymidylat 91.7 0.31 1E-05 45.3 6.8 22 166-187 2-23 (197)
456 1yrb_A ATP(GTP)binding protein 91.7 0.11 3.6E-06 50.8 3.8 25 162-186 12-36 (262)
457 2olj_A Amino acid ABC transpor 91.7 0.083 2.8E-06 51.7 2.9 23 164-186 50-72 (263)
458 1g6h_A High-affinity branched- 91.7 0.083 2.8E-06 51.6 2.9 23 164-186 33-55 (257)
459 1ak2_A Adenylate kinase isoenz 91.7 0.084 2.9E-06 50.6 3.0 24 164-187 16-39 (233)
460 2d2e_A SUFC protein; ABC-ATPas 91.7 0.088 3E-06 51.2 3.1 22 165-186 30-51 (250)
461 2xau_A PRE-mRNA-splicing facto 91.7 0.82 2.8E-05 52.1 11.6 90 165-254 110-219 (773)
462 1mv5_A LMRA, multidrug resista 91.7 0.091 3.1E-06 50.8 3.2 24 163-186 27-50 (243)
463 2r9v_A ATP synthase subunit al 91.7 0.5 1.7E-05 50.1 9.0 96 148-252 164-276 (515)
464 1sgw_A Putative ABC transporte 91.7 0.071 2.4E-06 50.4 2.4 22 165-186 36-57 (214)
465 3exa_A TRNA delta(2)-isopenten 91.7 0.09 3.1E-06 52.4 3.2 24 164-187 3-26 (322)
466 3qf4_A ABC transporter, ATP-bi 91.7 0.64 2.2E-05 51.2 10.4 23 164-186 369-391 (587)
467 2zej_A Dardarin, leucine-rich 91.7 0.081 2.8E-06 48.5 2.7 22 166-187 4-25 (184)
468 2c61_A A-type ATP synthase non 91.6 0.11 3.8E-06 54.7 4.0 100 148-252 141-258 (469)
469 2qe7_A ATP synthase subunit al 91.6 0.41 1.4E-05 50.7 8.3 96 148-252 151-263 (502)
470 2yl4_A ATP-binding cassette SU 91.6 0.28 9.5E-06 54.3 7.5 23 164-186 370-392 (595)
471 3mfy_A V-type ATP synthase alp 91.6 0.37 1.3E-05 51.5 7.9 59 148-215 216-275 (588)
472 2zu0_C Probable ATP-dependent 91.5 0.092 3.1E-06 51.6 3.1 24 164-187 46-69 (267)
473 3bgw_A DNAB-like replicative h 91.5 0.79 2.7E-05 48.5 10.5 53 163-219 196-248 (444)
474 1ltq_A Polynucleotide kinase; 91.5 0.093 3.2E-06 52.5 3.2 22 165-186 3-24 (301)
475 2dyk_A GTP-binding protein; GT 91.5 0.11 3.7E-06 46.1 3.3 23 165-187 2-24 (161)
476 1zu4_A FTSY; GTPase, signal re 91.4 0.11 3.7E-06 52.5 3.5 25 163-187 104-128 (320)
477 2eyu_A Twitching motility prot 91.4 0.11 3.8E-06 50.8 3.5 110 163-286 24-136 (261)
478 2q6t_A DNAB replication FORK h 91.4 0.47 1.6E-05 50.3 8.7 55 163-220 199-253 (444)
479 3foz_A TRNA delta(2)-isopenten 91.3 0.12 3.9E-06 51.5 3.5 24 163-186 9-32 (316)
480 2ghi_A Transport protein; mult 91.3 0.095 3.3E-06 51.2 2.9 22 165-186 47-68 (260)
481 4gt6_A Cell surface protein; l 91.3 0.47 1.6E-05 49.4 8.5 102 490-606 260-364 (394)
482 2qi9_C Vitamin B12 import ATP- 91.3 0.097 3.3E-06 50.8 2.9 23 165-187 27-49 (249)
483 3cmu_A Protein RECA, recombina 91.3 0.21 7.3E-06 61.9 6.5 84 163-253 1426-1515(2050)
484 2ck3_A ATP synthase subunit al 91.2 0.51 1.7E-05 50.1 8.5 100 148-252 151-271 (510)
485 2yz2_A Putative ABC transporte 91.1 0.1 3.5E-06 51.3 2.9 23 164-186 33-55 (266)
486 2ihy_A ABC transporter, ATP-bi 91.1 0.1 3.5E-06 51.6 2.9 23 165-187 48-70 (279)
487 2v9p_A Replication protein E1; 91.1 0.1 3.5E-06 52.1 3.0 24 163-186 125-148 (305)
488 4a82_A Cystic fibrosis transme 91.1 0.35 1.2E-05 53.3 7.5 23 164-186 367-389 (578)
489 2ce2_X GTPase HRAS; signaling 91.0 0.11 3.9E-06 46.0 3.0 22 166-187 5-26 (166)
490 2f9l_A RAB11B, member RAS onco 91.0 0.13 4.4E-06 47.8 3.5 25 163-187 4-28 (199)
491 3sop_A Neuronal-specific septi 90.9 0.12 4.2E-06 50.8 3.3 21 166-186 4-24 (270)
492 2lkc_A Translation initiation 90.9 0.16 5.6E-06 45.8 4.0 25 163-187 7-31 (178)
493 4eaq_A DTMP kinase, thymidylat 90.9 0.13 4.5E-06 49.2 3.4 25 163-187 25-49 (229)
494 2v3c_C SRP54, signal recogniti 90.8 0.14 4.7E-06 54.1 3.8 43 145-187 77-122 (432)
495 2wjg_A FEOB, ferrous iron tran 90.8 0.15 5.1E-06 46.6 3.6 25 163-187 6-30 (188)
496 1tf7_A KAIC; homohexamer, hexa 90.8 0.12 4E-06 56.4 3.3 25 163-187 280-304 (525)
497 1a7j_A Phosphoribulokinase; tr 90.8 0.056 1.9E-06 53.9 0.7 24 163-186 4-27 (290)
498 3vr4_A V-type sodium ATPase ca 90.7 0.15 5.2E-06 54.7 4.0 58 148-214 221-279 (600)
499 2r6a_A DNAB helicase, replicat 90.7 1.6 5.5E-05 46.2 12.1 52 163-217 202-253 (454)
500 1svi_A GTP-binding protein YSX 90.7 0.16 5.5E-06 46.7 3.8 25 163-187 22-46 (195)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.9e-44 Score=401.70 Aligned_cols=289 Identities=18% Similarity=0.212 Sum_probs=232.1
Q ss_pred eechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc--CcccccccceEEEEEeCCCC--CHHHHHHHH
Q 039885 140 CGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN--DNDVINHFGKRIWVCVSDPF--DEYRIAKAI 215 (674)
Q Consensus 140 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i 215 (674)
|||+.++++|.++|.... .+..++|+|+||||+||||||+++|+ +.+++.+|++++||++++.. ++..+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 23679999999999999999999998 67899999999999999985 899999999
Q ss_pred HHHhhCCCC-------CcccHHHHHHHHHHHcCCC-eEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHHh
Q 039885 216 IEALEGSAT-------NLVELNALLLRINESIARE-KFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 216 l~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 287 (674)
+.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 2234567889999999996 9999999999853222332 17999999999999998
Q ss_pred hcCC-CCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhccCCChHHHHHHHhhh
Q 039885 288 MMES-TDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLRFKRSLRVWQSILDSQ 366 (674)
Q Consensus 288 ~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~ 366 (674)
.++. ..+|+|++|+.++||+||.+.+|.... .+.+.+++.+|+++|+|+||||+++|+.|+.+ + -+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 8763 468999999999999999999876532 36788899999999999999999999999765 2 2333333222
Q ss_pred ---------------------------cc-----------ccccccCCcccChhhHHHHHHHh--ccccCCC-CccHHHH
Q 039885 367 ---------------------------MW-----------QLEEFERDYRMDKDELIKLWLAQ--GYIRPKE-NKELEMI 405 (674)
Q Consensus 367 ---------------------------~~-----------~l~~~~~~~~~~~~~li~~Wiae--g~i~~~~-~~~~e~~ 405 (674)
.. +++.+|.++.|+ +++|+|+ ||+.... +.+.+++
T Consensus 355 l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~ 430 (549)
T 2a5y_B 355 LESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEV 430 (549)
T ss_dssp HHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHH
T ss_pred hhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHH
Confidence 12 556677788888 8999999 9998876 5668888
Q ss_pred HHHHHHHHHHcCCCcccccCCCCCeeeeEEeChHHHHHHHHhhcccce
Q 039885 406 GEEYFDYLATRSFFQEFETDDYDGLVVSCKMHDIVHDFAQYLTKNECF 453 (674)
Q Consensus 406 ~~~~~~~Lv~rsll~~~~~~~~~~~~~~~~mHdlv~d~~~~~s~~e~~ 453 (674)
++ ||++|+++|||++...+ ... +|+|||+||+||++++.++++
T Consensus 431 ~~-~l~~L~~rsLl~~~~~~---~~~-~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 431 AD-RLKRLSKRGALLSGKRM---PVL-TFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HH-HHHHTTTBSSCSEEECS---SSC-EEECCHHHHHHHHTTSCTHHH
T ss_pred HH-HHHHHHHcCCeeEecCC---Cce-EEEeChHHHHHHHHHHHHHHH
Confidence 88 99999999999987643 233 799999999999999988775
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.1e-34 Score=324.75 Aligned_cols=266 Identities=18% Similarity=0.215 Sum_probs=207.0
Q ss_pred eeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccce-EEEEEeCCCCCHHHHHHHHHH
Q 039885 139 VCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGK-RIWVCVSDPFDEYRIAKAIIE 217 (674)
Q Consensus 139 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~il~ 217 (674)
.|||+.++++|.++|.... ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5999999999999998532 4689999999999999999999998788899986 899999999999888888887
Q ss_pred HhhCCC------CC-----cccHHHHHHHHHHHc---CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 039885 218 ALEGSA------TN-----LVELNALLLRINESI---AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE 283 (674)
Q Consensus 218 ~l~~~~------~~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 283 (674)
.+.... .+ ..+.+.+...+++.+ .+||+||||||||+ .+.|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccCh
Confidence 653211 00 123456677777765 78999999999998 3566654 2 689999999999
Q ss_pred hHHhhcCCCCeEeCC------CCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhccCC-Ch
Q 039885 284 TVAGMMESTDVISIK------ELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLRFKR-SL 356 (674)
Q Consensus 284 ~va~~~~~~~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~-~~ 356 (674)
.++..+.....|.++ +|+.+|||+||.+.. +... .++..+ .|+|+||||+++|+.|+.+. +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPRE---VLTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHH---HCCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHH---HhCCCHHHHHHHHHHHhCCCCCH
Confidence 988654433456666 999999999999983 3221 122233 39999999999999999873 67
Q ss_pred HHHHHH-------------------H-hhhccccccccCCcccChhhHHHHHHHhccccCCCCccHHHHHHHHHHHHHHc
Q 039885 357 RVWQSI-------------------L-DSQMWQLEEFERDYRMDKDELIKLWLAQGYIRPKENKELEMIGEEYFDYLATR 416 (674)
Q Consensus 357 ~~w~~~-------------------l-~~~~~~l~~~~~~~~~~~~~li~~Wiaeg~i~~~~~~~~e~~~~~~~~~Lv~r 416 (674)
++|... . +.++.++..++.++.|+++.++.+|+++| ++.++.+|++|+++
T Consensus 345 eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdR 414 (1221)
T 1vt4_I 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKY 414 (1221)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTS
T ss_pred HHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhh
Confidence 788642 1 23344566778899999999999999987 13588999999999
Q ss_pred CCCcccccCCCCCeeeeEEeChHHHHHHH
Q 039885 417 SFFQEFETDDYDGLVVSCKMHDIVHDFAQ 445 (674)
Q Consensus 417 sll~~~~~~~~~~~~~~~~mHdlv~d~~~ 445 (674)
|||+.... .. +|+|||++++++.
T Consensus 415 SLLq~d~~-----~~-rYrMHDLllELr~ 437 (1221)
T 1vt4_I 415 SLVEKQPK-----ES-TISIPSIYLELKV 437 (1221)
T ss_dssp SSSSBCSS-----SS-EEBCCCHHHHHHH
T ss_pred CCEEEeCC-----CC-EEEehHHHHHHhc
Confidence 99998421 12 7999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-33 Score=343.89 Aligned_cols=283 Identities=22% Similarity=0.318 Sum_probs=220.4
Q ss_pred cccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccc-cccc-ceEEEEEeCCCCC--HH
Q 039885 134 IDVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDV-INHF-GKRIWVCVSDPFD--EY 209 (674)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~ 209 (674)
.+.+.||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997543 36799999999999999999999997543 4445 6777999998544 34
Q ss_pred HHHHHHHHHhhCCC----CCcccHHHHHHHHHHHcCCC--eEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 039885 210 RIAKAIIEALEGSA----TNLVELNALLLRINESIARE--KFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE 283 (674)
Q Consensus 210 ~~~~~il~~l~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 283 (674)
..+..++..+.... ....+.+.+.+.++..+.++ ||||||||||+. ..|.. ..+|++||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCH
Confidence 45677777776543 22356788899999999877 999999999964 33332 26789999999999
Q ss_pred hHHhh-cCCCCeEeCCC-CChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhccCCChHHHHH
Q 039885 284 TVAGM-MESTDVISIKE-LSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLRFKRSLRVWQS 361 (674)
Q Consensus 284 ~va~~-~~~~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~ 361 (674)
.++.. ++....+++.+ |+++++++||...++... +.+.+++++|+++|+|+||||+++|++|+.+. ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 99854 45567899996 999999999999885332 33455688999999999999999999998754 23444
Q ss_pred HHhh-------------------------------------hccccccccCCcccChhhHHHHHHHhccccCCCCccHHH
Q 039885 362 ILDS-------------------------------------QMWQLEEFERDYRMDKDELIKLWLAQGYIRPKENKELEM 404 (674)
Q Consensus 362 ~l~~-------------------------------------~~~~l~~~~~~~~~~~~~li~~Wiaeg~i~~~~~~~~e~ 404 (674)
.++. ++.++..++.++.|+++.++.+|.++ ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~ 409 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TE 409 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HH
Confidence 3322 12233446678999999999999765 46
Q ss_pred HHHHHHHHHHHcCCCcccccCCCCCeeeeEEeChHHHHHHHHhhccc
Q 039885 405 IGEEYFDYLATRSFFQEFETDDYDGLVVSCKMHDIVHDFAQYLTKNE 451 (674)
Q Consensus 405 ~~~~~~~~Lv~rsll~~~~~~~~~~~~~~~~mHdlv~d~~~~~s~~e 451 (674)
.+++++++|+++||++.... +... +|+||++||++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~---~~~~-~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRN---GKSF-CYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEES---SSSE-EEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecC---CCce-EEEecHHHHHHHHhhhhHH
Confidence 78899999999999986543 3344 7999999999999987766
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=289.29 Aligned_cols=276 Identities=22% Similarity=0.326 Sum_probs=203.9
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccc-cccc-ceEEEEEeCCCCCHHHHHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDV-INHF-GKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~ 213 (674)
++.||||+.++++|.++|.... +..++|+|+||||+||||||++++++..+ ..+| +.++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4579999999999999997542 35789999999999999999999998665 7889 58999999875 4444444
Q ss_pred HH---HHHhhCC----CCCcccHHHHHHHHHHHcCC--CeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh
Q 039885 214 AI---IEALEGS----ATNLVELNALLLRINESIAR--EKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET 284 (674)
Q Consensus 214 ~i---l~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 284 (674)
.+ +..++.. .....+.+.+...++..+.+ +++||||||+|+. ..+. .+ ..|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCcH
Confidence 44 3344321 12345667778888888865 7899999999863 2222 22 56899999999999
Q ss_pred HHhhcCCCCeEeC---CCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhccCCChHHHHH
Q 039885 285 VAGMMESTDVISI---KELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLRFKRSLRVWQS 361 (674)
Q Consensus 285 va~~~~~~~~~~l---~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~ 361 (674)
++..+. ...+++ ++|+.+++++||...++... ....+.+.+|+++|+|+||||..+|+.|+.+. ..|..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 876643 234444 68999999999999886421 22345678899999999999999999998763 24655
Q ss_pred HHhhh-------------------------------------ccccccccCCcccChhhHHHHHHHhccccCCCCccHHH
Q 039885 362 ILDSQ-------------------------------------MWQLEEFERDYRMDKDELIKLWLAQGYIRPKENKELEM 404 (674)
Q Consensus 362 ~l~~~-------------------------------------~~~l~~~~~~~~~~~~~li~~Wiaeg~i~~~~~~~~e~ 404 (674)
+++.. ...++.++.++.|+.+.++.+|.++ .+
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~ 409 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TE 409 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HH
Confidence 44321 1122334557788888888888653 24
Q ss_pred HHHHHHHHHHHcCCCcccccCCCCCeeeeEEeChHHHHHHHHhh
Q 039885 405 IGEEYFDYLATRSFFQEFETDDYDGLVVSCKMHDIVHDFAQYLT 448 (674)
Q Consensus 405 ~~~~~~~~Lv~rsll~~~~~~~~~~~~~~~~mHdlv~d~~~~~s 448 (674)
.+..++++|+++|||+.... +... +|+||+++|++++...
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~---~~~~-~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRN---GKSF-RYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEE---TTEE-EEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCeEEecC---CCcc-EEEEcHHHHHHHHhhh
Confidence 56889999999999986432 2333 7999999999998874
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=2e-17 Score=171.83 Aligned_cols=175 Identities=22% Similarity=0.210 Sum_probs=85.8
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhc---------cCCceeEEEecccccccccccccc
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFD---------QLTCLRTLKIVAHDRRWSRGMIRE 542 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------~l~~Lr~L~L~~~~~~~~~~~l~~ 542 (674)
..+++|++++|.+..+|..+.++++|+.|++++|. ..+.+|..+. ++++|++|+| ++|.++.
T Consensus 127 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~--~~~~~p~~~~~~~~~~~~~~l~~L~~L~L-------~~n~l~~ 197 (328)
T 4fcg_A 127 AGLETLTLARNPLRALPASIASLNRLRELSIRACP--ELTELPEPLASTDASGEHQGLVNLQSLRL-------EWTGIRS 197 (328)
T ss_dssp TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET--TCCCCCSCSEEEC-CCCEEESTTCCEEEE-------EEECCCC
T ss_pred CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC--CccccChhHhhccchhhhccCCCCCEEEC-------cCCCcCc
Confidence 34455555555444444445555555555554433 2222333222 2555555555 5555555
Q ss_pred ccccccCCCCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCC
Q 039885 543 IPKEIEKLIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRG 622 (674)
Q Consensus 543 lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 622 (674)
+|..++++++|++|+|++|.++.+|+.++.+++|++|++++| ...+.+|..++.+++|++|++..|.+ .+
T Consensus 198 lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~~---------~~ 267 (328)
T 4fcg_A 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC-TALRNYPPIFGGRAPLKRLILKDCSN---------LL 267 (328)
T ss_dssp CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC-TTCCBCCCCTTCCCCCCEEECTTCTT---------CC
T ss_pred chHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC-cchhhhHHHhcCCCCCCEEECCCCCc---------hh
Confidence 555555555555555555555555555555555555555555 44555555555555555555544331 22
Q ss_pred CChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEee
Q 039885 623 CKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGF 670 (674)
Q Consensus 623 ~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~ 670 (674)
..+..+.++++|+ .|.++++..... .+..+.++++|+.+.+..
T Consensus 268 ~~p~~~~~l~~L~-~L~L~~n~~~~~----iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 268 TLPLDIHRLTQLE-KLDLRGCVNLSR----LPSLIAQLPANCIILVPP 310 (328)
T ss_dssp BCCTTGGGCTTCC-EEECTTCTTCCC----CCGGGGGSCTTCEEECCG
T ss_pred hcchhhhcCCCCC-EEeCCCCCchhh----ccHHHhhccCceEEeCCH
Confidence 2223344444444 555555443332 334455555555555543
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=4.1e-17 Score=169.43 Aligned_cols=177 Identities=22% Similarity=0.244 Sum_probs=150.8
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccc-ccccccccC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMI-REIPKEIEK 549 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l-~~lp~~i~~ 549 (674)
...+++|++++|.+..+|..+.++++|++|++++|. +. .+|..+.++++|++|+| ++|.+ ..+|..++.
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~--l~-~lp~~l~~l~~L~~L~L-------~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP--LR-ALPASIASLNRLRELSI-------RACPELTELPEPLAS 172 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC--CC-CCCGGGGGCTTCCEEEE-------EEETTCCCCCSCSEE
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc--cc-cCcHHHhcCcCCCEEEC-------CCCCCccccChhHhh
Confidence 467999999999999999999999999999999998 66 46778999999999999 88764 448887765
Q ss_pred ---------CCCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCC
Q 039885 550 ---------LIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRS 620 (674)
Q Consensus 550 ---------L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 620 (674)
+++|++|+|++|.++.+|..++++++|++|++++| .+..+|..++.+++|++|++..|.+
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N--~l~~l~~~l~~l~~L~~L~Ls~n~~--------- 241 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS--PLSALGPAIHHLPKLEELDLRGCTA--------- 241 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS--CCCCCCGGGGGCTTCCEEECTTCTT---------
T ss_pred ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC--CCCcCchhhccCCCCCEEECcCCcc---------
Confidence 99999999999999999999999999999999999 6788999999999999999977662
Q ss_pred CCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecCC
Q 039885 621 RGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDKE 673 (674)
Q Consensus 621 ~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~~ 673 (674)
.+..+..+..+.+|+ .|.++++..... .+..+.++++|+.|+|++|+.
T Consensus 242 ~~~~p~~~~~l~~L~-~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 242 LRNYPPIFGGRAPLK-RLILKDCSNLLT----LPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CCBCCCCTTCCCCCC-EEECTTCTTCCB----CCTTGGGCTTCCEEECTTCTT
T ss_pred hhhhHHHhcCCCCCC-EEECCCCCchhh----cchhhhcCCCCCEEeCCCCCc
Confidence 333445567777788 888887655443 445678899999999999864
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.63 E-value=4.5e-16 Score=160.48 Aligned_cols=129 Identities=19% Similarity=0.199 Sum_probs=76.4
Q ss_pred CceeEEEEEcCCcC---CccccccCCCCceEEEecC-CCcccccchhHhhccCCceeEEEecccccccccccccc-cccc
Q 039885 472 EKLRHSMLMLGFEA---SFPDSLLNAKKLRSFLISS-PYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKE 546 (674)
Q Consensus 472 ~~~r~l~l~~~~~~---~~p~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~ 546 (674)
..++++.++++.+. .+|..+.++++|++|++++ |. +.+.+|..|.++++|++|+| ++|.+.+ +|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~--l~~~~p~~l~~l~~L~~L~L-------s~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN--LVGPIPPAIAKLTQLHYLYI-------THTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT--EESCCCGGGGGCTTCSEEEE-------EEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc--ccccCChhHhcCCCCCEEEC-------cCCeeCCcCCHH
Confidence 35666666666554 3556666666666666663 44 44445555666666666666 6666553 5666
Q ss_pred ccCCCCCcceeecCCCCc-cccccccCCCcccEEEeccccccccccccccccCc-cCCeeeeeeeC
Q 039885 547 IEKLIHLRFLQLRDLMID-ELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLV-NLRHLSEFVVG 610 (674)
Q Consensus 547 i~~L~~Lr~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~-~L~~L~l~~~~ 610 (674)
++++++|++|+|++|.++ .+|..++.+++|++|++++| ...+.+|..++.++ +|++|++..|.
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCe
Confidence 666666666666666655 55666666666666666666 33335566666665 66666664444
No 8
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.63 E-value=2.8e-15 Score=157.02 Aligned_cols=282 Identities=17% Similarity=0.172 Sum_probs=166.4
Q ss_pred ccccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC------
Q 039885 133 LIDVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF------ 206 (674)
Q Consensus 133 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------ 206 (674)
...+..|+||+.++++|.+++.. + +++.|+|++|+|||||++++++.. . .+|+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHI 72 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCB
T ss_pred CCChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCC
Confidence 34456799999999999998863 1 589999999999999999998742 2 6777765432
Q ss_pred CHHHHHHHHHHHhhC-----------------CC-CCcccHHHHHHHHHHHcCC-CeEEEEEeCCCCCCh-------hhH
Q 039885 207 DEYRIAKAIIEALEG-----------------SA-TNLVELNALLLRINESIAR-EKFLLVLDDVWTEDY-------NKW 260 (674)
Q Consensus 207 ~~~~~~~~il~~l~~-----------------~~-~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~-------~~~ 260 (674)
+...++..+.+.+.. .. ....+..++...+.+.... ++.+|||||++..+. ..+
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 566667766665432 00 0123455666666665542 389999999976431 223
Q ss_pred HHHHHhhcCCCCCcEEEEEcCChhH-Hhh---------c-CC-CCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHH
Q 039885 261 ESFRRCLINGQRGSKILVTTRKETV-AGM---------M-ES-TDVISIKELSERECWSLFERIAFFNRPSLECEQLEEF 328 (674)
Q Consensus 261 ~~l~~~l~~~~~gs~IivTtR~~~v-a~~---------~-~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~ 328 (674)
..+...... ..+.++|+|++...+ ... . +. ...+++.+|+.+|+.+++.......+.... .+.
T Consensus 153 ~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~ 227 (350)
T 2qen_A 153 ALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENE 227 (350)
T ss_dssp HHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHH
T ss_pred HHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHH
Confidence 334333322 247789999887643 211 1 11 237899999999999999875422221111 245
Q ss_pred HHHHHHHcCCChHHHHHHHHHhccCCChHHHHH-HHhhh----ccccccccCCcccChhhHHHHHHHhccccCCCC----
Q 039885 329 GRKIVSKCKGLPLAVKTIGSLLRFKRSLRVWQS-ILDSQ----MWQLEEFERDYRMDKDELIKLWLAQGYIRPKEN---- 399 (674)
Q Consensus 329 ~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~-~l~~~----~~~l~~~~~~~~~~~~~li~~Wiaeg~i~~~~~---- 399 (674)
..+|++.|+|+|+++..++..+....+...+.. ..+.. ...+..... .-....-+-..+|.|-.....-
T Consensus 228 ~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~l~~la~g~~~~~~l~~~~ 305 (350)
T 2qen_A 228 IEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRR--RSPRYVDILRAIALGYNRWSLIRDYL 305 (350)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHhCCCCHHHHHHHH
Confidence 678999999999999999876432222222211 11110 000100000 0122333444555542100000
Q ss_pred -----ccHHHHHHHHHHHHHHcCCCcccccCCCCCeeeeEEe-ChHHHHHH
Q 039885 400 -----KELEMIGEEYFDYLATRSFFQEFETDDYDGLVVSCKM-HDIVHDFA 444 (674)
Q Consensus 400 -----~~~e~~~~~~~~~Lv~rsll~~~~~~~~~~~~~~~~m-Hdlv~d~~ 444 (674)
.........|++.|++.+++.... + .|.+ |++++++.
T Consensus 306 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~----~----~y~~~~p~~~~~~ 348 (350)
T 2qen_A 306 AVKGTKIPEPRLYALLENLKKMNWIVEED----N----TYKIADPVVATVL 348 (350)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTSEEEET----T----EEEESSHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCCCEEecC----C----EEEEecHHHHHHH
Confidence 001233567899999999997652 1 4554 77777765
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=2.6e-15 Score=151.29 Aligned_cols=178 Identities=20% Similarity=0.293 Sum_probs=143.7
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cc
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i 547 (674)
.+..+++|.+++|.+..+|. .+.++++|++|++++|. +....+..|..+++|++|+| ++|.+..+|. .+
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l-------~~n~l~~~~~~~~ 105 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--LQTLPAGIFKELKNLETLWV-------TDNKLQALPIGVF 105 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--CSCCCTTTTSSCTTCCEEEC-------CSSCCCCCCTTTT
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--cCeeChhhhcCCCCCCEEEC-------CCCcCCcCCHhHc
Confidence 45689999999999987775 68899999999999998 77766777899999999999 9999999775 56
Q ss_pred cCCCCCcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCccCCCCCCCCCCCCh
Q 039885 548 EKLIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKL 625 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 625 (674)
.++.+|++|+|++|.++.+|+. ++.+++|++|++++| .+..+|.. +..+++|++|++..|.++. . ..
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~--~~ 174 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN--ELQSLPKGVFDKLTSLKELRLYNNQLKR-------V--PE 174 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSC-------C--CT
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC--cCCccCHhHccCCcccceeEecCCcCcE-------e--Ch
Confidence 8999999999999999988764 689999999999999 68888876 8999999999997776443 2 12
Q ss_pred hhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 626 EVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 626 ~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
..+..+++|+ .|.++++.-. . .....+..+++|+.|+|+.|+
T Consensus 175 ~~~~~l~~L~-~L~L~~N~l~-~---~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 GAFDKLTELK-TLKLDNNQLK-R---VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCC-EEECCSSCCS-C---CCTTTTTTCTTCCEEECCSSC
T ss_pred hHhccCCCcC-EEECCCCcCC-c---CCHHHhccccCCCEEEecCCC
Confidence 2355666777 7877765322 1 122346778899999999875
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=1.4e-15 Score=156.68 Aligned_cols=185 Identities=18% Similarity=0.249 Sum_probs=94.1
Q ss_pred CceeEEEEEc-CCc-CCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-cccccc
Q 039885 472 EKLRHSMLML-GFE-ASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIE 548 (674)
Q Consensus 472 ~~~r~l~l~~-~~~-~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~ 548 (674)
+.+++|++++ |.+ ..+|..+.++++|++|++++|. +.+.+|..|.++++|++|+| ++|.+.+ +|..++
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L-------s~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN--VSGAIPDFLSQIKTLVTLDF-------SYNALSGTLPPSIS 146 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC--CEEECCGGGGGCTTCCEEEC-------CSSEEESCCCGGGG
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe--eCCcCCHHHhCCCCCCEEeC-------CCCccCCcCChHHh
Confidence 4556666652 443 2455556666666666666655 44445555666666666666 5565553 555566
Q ss_pred CCCCCcceeecCCCCc-cccccccCCC-cccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCC---------
Q 039885 549 KLIHLRFLQLRDLMID-ELPETCCELF-NLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRND--------- 617 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~-~lP~~i~~L~-~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~--------- 617 (674)
++++|++|+|++|.++ .+|..++++. +|++|++++| ...+.+|..+..++ |++|++..|.+......
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC
Confidence 6666666666666655 5555565555 5566666555 33334454444444 44444433332110000
Q ss_pred -----CCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 618 -----SRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 618 -----~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.+.....+..+..+++|+ .|.++++.. .+..+..+..+++|+.|+|+.|+
T Consensus 225 ~L~L~~N~l~~~~~~~~~l~~L~-~L~Ls~N~l----~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGKVGLSKNLN-GLDLRNNRI----YGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCSSEECCBGGGCCCCTTCC-EEECCSSCC----EECCCGGGGGCTTCCEEECCSSE
T ss_pred EEECCCCceeeecCcccccCCCC-EEECcCCcc----cCcCChHHhcCcCCCEEECcCCc
Confidence 000011122234445555 555554432 12233456666777777777663
No 11
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=5.8e-14 Score=150.59 Aligned_cols=211 Identities=15% Similarity=0.084 Sum_probs=134.3
Q ss_pred cCceeechhhHHHHHHHh-cCCCCCCCCceEEEEE--EecCCChHHHHHHHHhcCcccc---cccc-eEEEEEeCCCCCH
Q 039885 136 VSDVCGRVEEKSTLKSKL-LGEGSEQQNAVQTISL--VGMGGIGKTTLAQFVYNDNDVI---NHFG-KRIWVCVSDPFDE 208 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~vs~~~~~ 208 (674)
+..++||+.++++|.++| .....+.....+.+.| +|++|+||||||+.+++..... ..|+ ..+|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999988 4211000013345666 9999999999999998753211 0122 3568887777789
Q ss_pred HHHHHHHHHHhhCCCCC-cccHHHHHHHHHHHcC--CCeEEEEEeCCCCCC------hhhHHHHHHhhcCC---C--CCc
Q 039885 209 YRIAKAIIEALEGSATN-LVELNALLLRINESIA--REKFLLVLDDVWTED------YNKWESFRRCLING---Q--RGS 274 (674)
Q Consensus 209 ~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 274 (674)
..++..++.+++...+. ..+...+...+...+. +++++|||||+|... .+.+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 99999999998764321 2334555666666664 689999999997631 23444443333221 2 345
Q ss_pred EEEEEcCChhHHhhc--------CC-CCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcC------CC
Q 039885 275 KILVTTRKETVAGMM--------ES-TDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCK------GL 339 (674)
Q Consensus 275 ~IivTtR~~~va~~~--------~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~------Gl 339 (674)
.||+||+...+...+ .. ...+.+.+++.++++++|...+....... .--.+....|++.|+ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCc
Confidence 588788755432111 11 22399999999999999976542111100 011345667889999 99
Q ss_pred hHHHHHHHH
Q 039885 340 PLAVKTIGS 348 (674)
Q Consensus 340 PLai~~~~~ 348 (674)
|..+..+..
T Consensus 259 p~~~~~l~~ 267 (412)
T 1w5s_A 259 ARRAIVALK 267 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 976665543
No 12
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=4e-15 Score=150.44 Aligned_cols=133 Identities=19% Similarity=0.212 Sum_probs=112.5
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccc
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i 547 (674)
.+..+++|.+++|.+..++. .+.++++|++|++++|. +....+..|.++++|++|+| ++|.+..+| ..+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~ 96 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLIL-------TGNPIQSLALGAF 96 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC--CCEECTTTTTTCTTCCEEEC-------TTCCCCEECTTTT
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc--CCccCHHHccCCcCCCEEEC-------CCCccCccChhhh
Confidence 45679999999998877665 78889999999999987 77766777899999999999 999988855 678
Q ss_pred cCCCCCcceeecCCCCccccc-cccCCCcccEEEeccccccccc--cccccccCccCCeeeeeeeCccC
Q 039885 548 EKLIHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLRR--LPHGFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~~--lP~~i~~L~~L~~L~l~~~~~~~ 613 (674)
+++.+|++|++++|.+..+|. .++.+++|++|++++| .+.. +|..++++++|++|++..|.++.
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS--CCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCC--ccceecCchhhccCCCCCEEECCCCCCCc
Confidence 999999999999999888876 6899999999999998 4554 78889999999999997776544
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=6.1e-15 Score=149.88 Aligned_cols=128 Identities=25% Similarity=0.294 Sum_probs=65.0
Q ss_pred CCceeEEEEEcCCcCCcc-ccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccc-cccc-cccc
Q 039885 471 KEKLRHSMLMLGFEASFP-DSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGM-IREI-PKEI 547 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~-l~~l-p~~i 547 (674)
++.+++|.+++|.+..+| ..+..+++|++|++++|. +....|..|..+++|++|++ ++|. +..+ |..+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l-------~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--LARIDAAAFTGLALLEQLDL-------SDNAQLRSVDPATF 101 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEEC-------CSCTTCCCCCTTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc--cceeCHhhcCCccCCCEEeC-------CCCCCccccCHHHh
Confidence 445666666666555444 235555666666666554 44444445555555555555 5554 4443 3445
Q ss_pred cCCCCCcceeecCCCCccc-cccccCCCcccEEEeccccccccccccc-cccCccCCeeeeeee
Q 039885 548 EKLIHLRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVV 609 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~ 609 (674)
..+++|++|+|++|.++.+ |..+.++++|++|++++| .+..+|.. ++.+++|++|++..|
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN--ALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC--cccccCHhHhccCCCccEEECCCC
Confidence 5555555555555554444 233445555555555554 33344332 444555555555333
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=5.3e-14 Score=147.62 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=161.8
Q ss_pred cccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCC-----CCH
Q 039885 134 IDVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDP-----FDE 208 (674)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~ 208 (674)
..+..|+||+.+++.|.+ +.. +++.|+|++|+|||||++.+++.. .. ..+|+.+... .+.
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCH
Confidence 345679999999999999 742 589999999999999999998742 21 2578887642 345
Q ss_pred HHHHHHHHHHhhC-------------C-------CC---------CcccHHHHHHHHHHHcCCCeEEEEEeCCCCCCh--
Q 039885 209 YRIAKAIIEALEG-------------S-------AT---------NLVELNALLLRINESIAREKFLLVLDDVWTEDY-- 257 (674)
Q Consensus 209 ~~~~~~il~~l~~-------------~-------~~---------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-- 257 (674)
..++..+.+.+.. . .. .......+...+.+... ++++|||||++..+.
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 5555555544321 0 00 12234555555555433 499999999976321
Q ss_pred -hhHHHHHHhhcCCCCCcEEEEEcCChhHHh-h---------c-CC-CCeEeCCCCChHhhHHHHHHHhhcCCCCCChhh
Q 039885 258 -NKWESFRRCLINGQRGSKILVTTRKETVAG-M---------M-ES-TDVISIKELSERECWSLFERIAFFNRPSLECEQ 324 (674)
Q Consensus 258 -~~~~~l~~~l~~~~~gs~IivTtR~~~va~-~---------~-~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~ 324 (674)
..|..+...+.....+.++|+|++...... . . +. ...+++.+|+.+++.+++.......+... ..
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~ 231 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--KD 231 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--CC
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC--Cc
Confidence 123232233322224678999999765321 1 1 11 24789999999999999987542111111 11
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhccCCChHHHHHH-Hhhh----cccccccc--CCcccChhhHHHHHHHhccccCC
Q 039885 325 LEEFGRKIVSKCKGLPLAVKTIGSLLRFKRSLRVWQSI-LDSQ----MWQLEEFE--RDYRMDKDELIKLWLAQGYIRPK 397 (674)
Q Consensus 325 l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~-l~~~----~~~l~~~~--~~~~~~~~~li~~Wiaeg~i~~~ 397 (674)
. ..|++.|+|+|+++..++..+....+...|..- .+.. ...+...- ....-....-+-..+|.|-
T Consensus 232 ~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g~---- 303 (357)
T 2fna_A 232 Y----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSKCG---- 303 (357)
T ss_dssp H----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCB----
T ss_pred H----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC----
Confidence 1 679999999999999998876433333333221 1110 00010000 0001122334445566531
Q ss_pred CCccH-------------HHHHHHHHHHHHHcCCCcccccCCCCCeeeeEE-eChHHHHHH
Q 039885 398 ENKEL-------------EMIGEEYFDYLATRSFFQEFETDDYDGLVVSCK-MHDIVHDFA 444 (674)
Q Consensus 398 ~~~~~-------------e~~~~~~~~~Lv~rsll~~~~~~~~~~~~~~~~-mHdlv~d~~ 444 (674)
..... ......+++.|++.++|.... + .|+ -|++++++.
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~----~----~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG----E----KYCPSEPLISLAF 356 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS----S----CEEESSHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC----C----EEEecCHHHHHhh
Confidence 11111 123457899999999997643 1 355 578888763
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=5.2e-15 Score=150.65 Aligned_cols=175 Identities=19% Similarity=0.160 Sum_probs=136.3
Q ss_pred CCCceeEEEEEcCCcCCc-cccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccccc
Q 039885 470 PKEKLRHSMLMLGFEASF-PDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIE 548 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~ 548 (674)
.+..++.|.+++|.+..+ |..+..+++|+.|++++|. +... +. ...+++|++|+| ++|.+..+|..+.
T Consensus 29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~-~~-~~~l~~L~~L~L-------s~N~l~~l~~~~~ 97 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--LTKL-QV-DGTLPVLGTLDL-------SHNQLQSLPLLGQ 97 (290)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC--CCEE-EC-CSCCTTCCEEEC-------CSSCCSSCCCCTT
T ss_pred CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc--cCcc-cC-CCCCCcCCEEEC-------CCCcCCcCchhhc
Confidence 457889999999988765 4568889999999999988 6553 33 378899999999 9999999999999
Q ss_pred CCCCCcceeecCCCCccccc-cccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCccCCCCCCCCCCCChh
Q 039885 549 KLIHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKLE 626 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 626 (674)
.+++|++|+|++|.++.+|+ .+..+++|++|++++| .+..+|.+ +..+++|++|++..|.++. .+. .
T Consensus 98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------l~~--~ 166 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTE-------LPA--G 166 (290)
T ss_dssp TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTTSCCSC-------CCT--T
T ss_pred cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC--CCCccChhhcccccCCCEEECCCCcCCc-------cCH--H
Confidence 99999999999999998885 5899999999999999 67777765 6889999999997776443 222 2
Q ss_pred hccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 627 VLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 627 ~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.+..+++|+ .|.++++.-. ..+..+....+|+.|+|+.|+
T Consensus 167 ~~~~l~~L~-~L~L~~N~l~-----~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 167 LLNGLENLD-TLLLQENSLY-----TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTCTTCC-EEECCSSCCC-----CCCTTTTTTCCCSEEECCSCC
T ss_pred HhcCcCCCC-EEECCCCcCC-----ccChhhcccccCCeEEeCCCC
Confidence 244566666 6777665432 234456667789999998775
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=7.2e-15 Score=146.37 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=108.2
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccc
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i 547 (674)
.+..++.|.+++|.+..++. .+.++++|+.|++++|. +....+..|..+++|++|+| ++|.++.+| ..+
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~ 103 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGL-------ANNQLASLPLGVF 103 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEEC-------TTSCCCCCCTTTT
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHhHhccCCcCCEEEC-------CCCcccccChhHh
Confidence 34567788888877765543 56777888888888777 66666666777888888888 777777755 456
Q ss_pred cCCCCCcceeecCCCCcccccc-ccCCCcccEEEecccccccccccc-ccccCccCCeeeeeeeCccCCCCCCCCCCCCh
Q 039885 548 EKLIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSEFVVGITGSRNDSRSRGCKL 625 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 625 (674)
+.+.+|++|+|++|.++.+|.. +..+++|++|+|++| .+..+|. .++.+++|++|++..|.++. . ..
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~--~~ 172 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--QLQSIPAGAFDKLTNLQTLSLSTNQLQS-------V--PH 172 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSC-------C--CT
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC--cCCccCHHHcCcCcCCCEEECCCCcCCc-------c--CH
Confidence 7788888888888888777765 477888888888887 5666665 47778888888886665433 1 11
Q ss_pred hhccCcccCCCeeEEeccCCC
Q 039885 626 EVLGQLRHLRGSLRIRGLGNV 646 (674)
Q Consensus 626 ~~L~~L~~L~g~L~i~~l~~~ 646 (674)
..+..+++|+ .|.+.++...
T Consensus 173 ~~~~~l~~L~-~L~l~~N~~~ 192 (251)
T 3m19_A 173 GAFDRLGKLQ-TITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCC-EEECCSCCBC
T ss_pred HHHhCCCCCC-EEEeeCCcee
Confidence 2344555555 6666665443
No 17
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.56 E-value=4.8e-15 Score=155.59 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=143.2
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccc-c
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE-I 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~-i 547 (674)
.++.+++|.+++|.+..+|. .+.++++|++|++++|. +....|..|.++++|++|+| ++|.++.+|.. +
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~~~ 120 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG--INTIEEDSFSSLGSLEHLDL-------SYNYLSNLSSSWF 120 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEEC-------CSSCCSSCCHHHH
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc--cCccCHhhcCCCCCCCEEEC-------CCCcCCcCCHhHh
Confidence 45689999999999987775 68899999999999998 77777788999999999999 99999998866 8
Q ss_pred cCCCCCcceeecCCCCccccc--cccCCCcccEEEeccccccccccc-cccccCccCCeeeeeeeCccCCCCCCCCCCCC
Q 039885 548 EKLIHLRFLQLRDLMIDELPE--TCCELFNLQTLEIRQRGYYLRRLP-HGFGRLVNLRHLSEFVVGITGSRNDSRSRGCK 624 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 624 (674)
+++++|++|+|++|.++.+|. .++++++|++|++++| ..+..+| ..++++++|++|++..|.+.. ..
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~ 190 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM-DTFTKIQRKDFAGLTFLEELEIDASDLQS---------YE 190 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES-SSCCEECTTTTTTCCEEEEEEEEETTCCE---------EC
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC-ccccccCHHHccCCCCCCEEECCCCCcCc---------cC
Confidence 999999999999999999998 7899999999999998 5577774 569999999999998877433 22
Q ss_pred hhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 625 LEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 625 ~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+..+.++++|+ .|.+++... ..... ..+..+++|+.|+|+.|+
T Consensus 191 ~~~l~~l~~L~-~L~l~~n~l-~~~~~---~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 191 PKSLKSIQNVS-HLILHMKQH-ILLLE---IFVDVTSSVECLELRDTD 233 (353)
T ss_dssp TTTTTTCSEEE-EEEEECSCS-TTHHH---HHHHHTTTEEEEEEESCB
T ss_pred HHHHhccccCC-eecCCCCcc-ccchh---hhhhhcccccEEECCCCc
Confidence 34455566666 677776543 22222 123346778888888764
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.55 E-value=1.1e-14 Score=147.89 Aligned_cols=179 Identities=22% Similarity=0.225 Sum_probs=142.8
Q ss_pred CCCceeEEEEEcCCcCCc-cccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccc-cccc
Q 039885 470 PKEKLRHSMLMLGFEASF-PDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREI-PKEI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~l-p~~i 547 (674)
....+++|.+++|.+..+ |..+..+++|++|++++|. .+....|..|..+++|++|++ ++|.+..+ |..+
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~l~~~~~~~~~~l~~L~~L~l-------~~n~l~~~~~~~~ 125 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-QLRSVDPATFHGLGRLHTLHL-------DRCGLQELGPGLF 125 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT-TCCCCCTTTTTTCTTCCEEEC-------TTSCCCCCCTTTT
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC-CccccCHHHhcCCcCCCEEEC-------CCCcCCEECHhHh
Confidence 356899999999988766 6678899999999999984 144445777999999999999 99999885 6778
Q ss_pred cCCCCCcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCccCCCCCCCCCCCCh
Q 039885 548 EKLIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKL 625 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 625 (674)
+++++|++|+|++|.++.+|.. ++.+++|++|++++| .+..+|.. +..+++|++|++..|.+.. ..+
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~ 194 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RISSVPERAFRGLHSLDRLLLHQNRVAH---------VHP 194 (285)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCE---------ECT
T ss_pred hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC--cccccCHHHhcCccccCEEECCCCcccc---------cCH
Confidence 9999999999999999988865 899999999999999 67788765 8999999999997776433 223
Q ss_pred hhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 626 EVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 626 ~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
..+.++++|+ .|.+++..-.. ..+..+..+++|+.|+|+.|+
T Consensus 195 ~~~~~l~~L~-~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 195 HAFRDLGRLM-TLYLFANNLSA----LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTTTCTTCC-EEECCSSCCSC----CCHHHHTTCTTCCEEECCSSC
T ss_pred hHccCccccc-EeeCCCCcCCc----CCHHHcccCcccCEEeccCCC
Confidence 4556667777 78887754322 122346678899999999875
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.55 E-value=1.4e-14 Score=167.93 Aligned_cols=177 Identities=20% Similarity=0.252 Sum_probs=104.2
Q ss_pred CceeEEEEEcCCcC-CccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccccccC
Q 039885 472 EKLRHSMLMLGFEA-SFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIEK 549 (674)
Q Consensus 472 ~~~r~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~~ 549 (674)
+.++.|.+.+|.+. .+|..+.++++|+.|++++|. +.+.+|..+..+++|++|+| ++|.+.+ +|..+++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~--l~~~~p~~~~~l~~L~~L~L-------~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR--LTGEIPKWIGRLENLAILKL-------SNNSFSGNIPAELGD 536 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEEC-------CSSCCEEECCGGGGG
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc--cCCcCChHHhcCCCCCEEEC-------CCCcccCcCCHHHcC
Confidence 44555555555553 445555556666666666655 55455555666666666666 6666554 5666666
Q ss_pred CCCCcceeecCCCCc-ccccc-----------------------------------------------------------
Q 039885 550 LIHLRFLQLRDLMID-ELPET----------------------------------------------------------- 569 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~-~lP~~----------------------------------------------------------- 569 (674)
+++|++|+|++|.+. .+|..
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 666666666666543 44432
Q ss_pred -----------ccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCee
Q 039885 570 -----------CCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSL 638 (674)
Q Consensus 570 -----------i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L 638 (674)
++.+.+|++||+++| ...+.+|..|++|++|+.|++..|.+ .+..+..+++|+.|+ .|
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l---------~g~ip~~l~~L~~L~-~L 685 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDI---------SGSIPDEVGDLRGLN-IL 685 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCC---------CSCCCGGGGGCTTCC-EE
T ss_pred cceecccCchhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCcc---------CCCCChHHhCCCCCC-EE
Confidence 223455666666666 44556666677777777777765552 333445556666666 66
Q ss_pred EEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 639 RIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 639 ~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+++++.. .+..+..+.+++.|+.|+|++|+
T Consensus 686 dLs~N~l----~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 686 DLSSNKL----DGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp ECCSSCC----EECCCGGGGGCCCCSEEECCSSE
T ss_pred ECCCCcc----cCcCChHHhCCCCCCEEECcCCc
Confidence 6666542 23345566777778888887774
No 20
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=3.3e-14 Score=146.13 Aligned_cols=167 Identities=20% Similarity=0.198 Sum_probs=136.7
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
.+.+++|++++|.+..++. +..+++|+.|++++|. +.. ++ .+..+++|+.|++ ++|.+..+|. ++.+
T Consensus 62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~--l~~-~~-~~~~l~~L~~L~l-------~~n~l~~~~~-l~~l 128 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP--LKN-VS-AIAGLQSIKTLDL-------TSTQITDVTP-LAGL 128 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC--CSC-CG-GGTTCTTCCEEEC-------TTSCCCCCGG-GTTC
T ss_pred cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc--CCC-ch-hhcCCCCCCEEEC-------CCCCCCCchh-hcCC
Confidence 5678999999999888876 8899999999999998 665 34 4889999999999 9999988875 8999
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
++|++|++++|.++.+|. ++.+++|++|++++| .+..+|. +..+++|++|++..|.++. .+ .+..
T Consensus 129 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n--~l~~~~~-l~~l~~L~~L~l~~n~l~~-------~~----~l~~ 193 (308)
T 1h6u_A 129 SNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA--QVSDLTP-LANLSKLTTLKADDNKISD-------IS----PLAS 193 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS--CCCCCGG-GTTCTTCCEEECCSSCCCC-------CG----GGGG
T ss_pred CCCCEEECCCCccCcCcc-ccCCCCccEEEccCC--cCCCChh-hcCCCCCCEEECCCCccCc-------Ch----hhcC
Confidence 999999999999998887 889999999999999 6777877 9999999999997766433 22 2667
Q ss_pred cccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 631 LRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 631 L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+++|+ .|.++++.-... . .+..+++|+.|+|+.|+
T Consensus 194 l~~L~-~L~L~~N~l~~~-~-----~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 194 LPNLI-EVHLKNNQISDV-S-----PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CTTCC-EEECTTSCCCBC-G-----GGTTCTTCCEEEEEEEE
T ss_pred CCCCC-EEEccCCccCcc-c-----cccCCCCCCEEEccCCe
Confidence 77777 788877643321 1 27888999999999874
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=1.1e-14 Score=158.34 Aligned_cols=133 Identities=23% Similarity=0.280 Sum_probs=112.2
Q ss_pred CCCceeEEEEEcCCcCCc-cccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cc
Q 039885 470 PKEKLRHSMLMLGFEASF-PDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i 547 (674)
.+..+++|.+++|.+..+ |..+.++++|+.|++++|. +....+..|.++++|++|+| ++|.++.+|. .+
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~ 143 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS--IRQIEVGAFNGLASLNTLEL-------FDNWLTVIPSGAF 143 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEEC-------CSSCCSBCCTTTS
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc--cCCcChhhccCcccCCEEEC-------CCCcCCccChhhh
Confidence 457899999999998765 5678899999999999998 77777788999999999999 9999999775 48
Q ss_pred cCCCCCcceeecCCCCccccc-cccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCcc
Q 039885 548 EKLIHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGIT 612 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~ 612 (674)
+++++|++|+|++|.++.+|. .+.++++|++|++++| +.++.+|.. +.++++|++|++..|.++
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~-~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL-KKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC-TTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC-CCccccChhhccCCCCCCEEECCCCccc
Confidence 889999999999999998887 5788899999999887 677888764 788888888888666543
No 22
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=2.3e-14 Score=147.24 Aligned_cols=167 Identities=17% Similarity=0.213 Sum_probs=139.3
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
.+.+++|.+.++.+..+| .+..+++|+.|++++|. +....+ +..+++|++|+| ++|.+..+| .++.+
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~--i~~~~~--~~~l~~L~~L~L-------~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ--ITDLAP--LKNLTKITELEL-------SGNPLKNVS-AIAGL 106 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC--CCCCGG--GTTCCSCCEEEC-------CSCCCSCCG-GGTTC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc--CCCChh--HccCCCCCEEEc-------cCCcCCCch-hhcCC
Confidence 357899999999988887 68899999999999998 766444 999999999999 999999887 69999
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
.+|++|+|++|.++.+|. ++.+++|++|++++| .+..+|. ++.+++|++|++..|.++. . ..+..
T Consensus 107 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n--~l~~~~~-l~~l~~L~~L~l~~n~l~~-------~----~~l~~ 171 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN--QITNISP-LAGLTNLQYLSIGNAQVSD-------L----TPLAN 171 (308)
T ss_dssp TTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS--CCCCCGG-GGGCTTCCEEECCSSCCCC-------C----GGGTT
T ss_pred CCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC--ccCcCcc-ccCCCCccEEEccCCcCCC-------C----hhhcC
Confidence 999999999999999986 999999999999999 6778876 9999999999997766433 2 22667
Q ss_pred cccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 631 LRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 631 L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+++|+ .|.++++.-.. .. .+..+++|+.|+|++|+
T Consensus 172 l~~L~-~L~l~~n~l~~-~~-----~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 172 LSKLT-TLKADDNKISD-IS-----PLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CTTCC-EEECCSSCCCC-CG-----GGGGCTTCCEEECTTSC
T ss_pred CCCCC-EEECCCCccCc-Ch-----hhcCCCCCCEEEccCCc
Confidence 77777 78887754322 11 27788999999999885
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=156.53 Aligned_cols=133 Identities=21% Similarity=0.249 Sum_probs=110.7
Q ss_pred CCCceeEEEEEcCCcCCcc-ccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cc
Q 039885 470 PKEKLRHSMLMLGFEASFP-DSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i 547 (674)
.+..++.|.+++|.+..++ ..+.++++|+.|++++|. +....+..|.++++|+.|+| ++|.++.+|. .+
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH--IRTIEIGAFNGLANLNTLEL-------FDNRLTTIPNGAF 132 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC--CCEECGGGGTTCSSCCEEEC-------CSSCCSSCCTTTS
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc--CCccChhhccCCccCCEEEC-------CCCcCCeeCHhHh
Confidence 4578899999999887665 578899999999999998 77777788999999999999 9999998775 68
Q ss_pred cCCCCCcceeecCCCCccccc-cccCCCcccEEEecccccccccccc-ccccCccCCeeeeeeeCcc
Q 039885 548 EKLIHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSEFVVGIT 612 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~ 612 (674)
..+++|++|+|++|.++.+|. .+.++++|++|++++| ..+..+|. .|.++++|++|++..|.++
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~-~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL-KRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC-TTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC-CCcceeCcchhhcccccCeecCCCCcCc
Confidence 899999999999999988876 5788888888888887 57777776 4788888888888665533
No 24
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=4.1e-14 Score=144.08 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=124.4
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLI 551 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~ 551 (674)
..++.+.+.++.+..++ .+..+++|++|++++|. +....+ +.++++|++|++ ++|.+..+|. ++.++
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~--l~~~~~--l~~l~~L~~L~l-------~~n~l~~~~~-l~~l~ 112 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK--LTDIKP--LANLKNLGWLFL-------DENKVKDLSS-LKDLK 112 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC--CCCCGG--GTTCTTCCEEEC-------CSSCCCCGGG-GTTCT
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc--cCCCcc--cccCCCCCEEEC-------CCCcCCCChh-hccCC
Confidence 46788888888877775 47788888888888887 666443 888888888888 8888888664 88888
Q ss_pred CCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCc
Q 039885 552 HLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQL 631 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 631 (674)
+|++|+|++|.++.+| .++.+++|++|++++| .+..+ ..++.+++|++|++..|.++. .+ .+..+
T Consensus 113 ~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n--~l~~~-~~l~~l~~L~~L~L~~N~l~~-------~~----~l~~l 177 (291)
T 1h6t_A 113 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN--KITDI-TVLSRLTKLDTLSLEDNQISD-------IV----PLAGL 177 (291)
T ss_dssp TCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS--CCCCC-GGGGGCTTCSEEECCSSCCCC-------CG----GGTTC
T ss_pred CCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC--cCCcc-hhhccCCCCCEEEccCCcccc-------ch----hhcCC
Confidence 8888888888888874 6888888888888888 56666 468888888888887666433 22 16666
Q ss_pred ccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 632 RHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 632 ~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
++|+ .|.++++.- .+. ..+..+++|+.|+|+.|+
T Consensus 178 ~~L~-~L~L~~N~i-~~l-----~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 178 TKLQ-NLYLSKNHI-SDL-----RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCC-EEECCSSCC-CBC-----GGGTTCTTCSEEEEEEEE
T ss_pred CccC-EEECCCCcC-CCC-----hhhccCCCCCEEECcCCc
Confidence 6777 777766532 221 236778888888888774
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.53 E-value=2.7e-14 Score=165.56 Aligned_cols=177 Identities=19% Similarity=0.241 Sum_probs=103.7
Q ss_pred CceeEEEEEcCCcC-CccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccccccC
Q 039885 472 EKLRHSMLMLGFEA-SFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIEK 549 (674)
Q Consensus 472 ~~~r~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~~ 549 (674)
++++.|.+..|.+. .+|..+..+++|++|++.+|. +.+.+|..+.++++|++|+| ++|.+.+ +|..++.
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~L~~L~L-------~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND--LTGEIPSGLSNCTNLNWISL-------SNNRLTGEIPKWIGR 512 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEEC-------CSSCCCSCCCGGGGG
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc--ccCcCCHHHhcCCCCCEEEc-------cCCccCCcCChHHhc
Confidence 34555555555553 455555556666666666655 55445555666666666666 6666553 5666666
Q ss_pred CCCCcceeecCCCCc-cccccccCCCcccEEEecccccccccccccc---------------------------------
Q 039885 550 LIHLRFLQLRDLMID-ELPETCCELFNLQTLEIRQRGYYLRRLPHGF--------------------------------- 595 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i--------------------------------- 595 (674)
+++|++|+|++|.+. .+|..++.+++|++|++++| ...+.+|..+
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS-EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC-ccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence 666666666666654 56666666666666666666 3444444332
Q ss_pred -------------------------------------ccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCee
Q 039885 596 -------------------------------------GRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSL 638 (674)
Q Consensus 596 -------------------------------------~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L 638 (674)
+.+++|+.|++..|.+ .+..+.++++|+.|+ .|
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l---------~g~ip~~l~~l~~L~-~L 661 (768)
T 3rgz_A 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML---------SGYIPKEIGSMPYLF-IL 661 (768)
T ss_dssp EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC---------BSCCCGGGGGCTTCC-EE
T ss_pred cccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc---------cccCCHHHhccccCC-EE
Confidence 2234455555544442 233445566666666 67
Q ss_pred EEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 639 RIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 639 ~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.++++... +..+..++++++|+.|+|++|+
T Consensus 662 ~Ls~N~l~----g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 662 NLGHNDIS----GSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp ECCSSCCC----SCCCGGGGGCTTCCEEECCSSC
T ss_pred eCcCCccC----CCCChHHhCCCCCCEEECCCCc
Confidence 77765433 3345667788888899888875
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.53 E-value=1.5e-14 Score=163.40 Aligned_cols=180 Identities=18% Similarity=0.131 Sum_probs=141.6
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccc-cccc
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREI-PKEI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~l-p~~i 547 (674)
.+..++++++++|.+..++. .+.++++|++|++++|. +....|..|.++++|++|+| ++|.+..+ |..|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~i~~~~~~~l~~L~~L~L-------s~n~l~~~~p~~~ 100 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--IETIEDKAWHGLHHLSNLIL-------TGNPIQSFSPGSF 100 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEEC-------TTCCCCCCCTTSS
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--ccccCHHHhhchhhcCEeEC-------CCCcccccChhhc
Confidence 46789999999999987664 78899999999999998 87777888999999999999 99999985 8899
Q ss_pred cCCCCCcceeecCCCCcccc-ccccCCCcccEEEecccccccc--ccccccccCccCCeeeeeeeCccCCCCCCCCCCCC
Q 039885 548 EKLIHLRFLQLRDLMIDELP-ETCCELFNLQTLEIRQRGYYLR--RLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCK 624 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 624 (674)
+++++|++|+|++|.+..+| ..++++++|++|++++| .+. .+|..++++++|++|++..|.++. . .+..
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~----~--~~~~ 172 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN--FIHSCKLPAYFSNLTNLVHVDLSYNYIQT----I--TVND 172 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS--CCCCCCCCGGGGTCTTCCEEECCSSCCCE----E--CTTT
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC--cccceechHhHhhcCCCCEEEccCCccee----c--Chhh
Confidence 99999999999999999887 67999999999999999 454 689999999999999998777544 2 3344
Q ss_pred hhhccCccc-CCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 625 LEVLGQLRH-LRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 625 ~~~L~~L~~-L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+..+.+|+. +. .|.+++..-. ..+.......+|+.|+|++|.
T Consensus 173 ~~~l~~L~~~l~-~L~l~~n~l~-----~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 173 LQFLRENPQVNL-SLDMSLNPID-----FIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp THHHHHCTTCCC-EEECTTCCCC-----EECTTTTTTCEEEEEEEESCC
T ss_pred hhhhhccccccc-eeeccCCCcc-----eeCcccccCceeeeeeccCCc
Confidence 555555543 22 4665553321 111222233367788877764
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=2.4e-14 Score=145.68 Aligned_cols=174 Identities=18% Similarity=0.101 Sum_probs=125.0
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
..+++.+.+.++.+..+|..+. ++++.|++++|. +....+..|..+++|++|+| ++|.++.+|.. +.+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~-~~l 76 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL--LYTFSLATLMPYTRLTQLNL-------DRAELTKLQVD-GTL 76 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC--CSEEEGGGGTTCTTCCEEEC-------TTSCCCEEECC-SCC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc--CCccCHHHhhcCCCCCEEEC-------CCCccCcccCC-CCC
Confidence 3457778888888877776554 678888888887 76666777888888888888 88888887764 788
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccc-cccccCccCCeeeeeeeCccCCCCCCCCCCCChhhcc
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLP-HGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLG 629 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 629 (674)
++|++|+|++|.++.+|..+..+++|++|++++| .+..+| ..|.++++|++|++..|.++. . ....+.
T Consensus 77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N--~l~~l~~~~~~~l~~L~~L~L~~N~l~~-------~--~~~~~~ 145 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN--RLTSLPLGALRGLGELQELYLKGNELKT-------L--PPGLLT 145 (290)
T ss_dssp TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS--CCCCCCSSTTTTCTTCCEEECTTSCCCC-------C--CTTTTT
T ss_pred CcCCEEECCCCcCCcCchhhccCCCCCEEECCCC--cCcccCHHHHcCCCCCCEEECCCCCCCc-------c--Chhhcc
Confidence 8888888888888888888888888888888888 566776 458888888888886666433 1 122344
Q ss_pred CcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 630 QLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 630 ~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.+++|+ .|.++++.-.. .....+.++++|+.|+|+.|+
T Consensus 146 ~l~~L~-~L~L~~N~l~~----l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 146 PTPKLE-KLSLANNNLTE----LPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp TCTTCC-EEECTTSCCSC----CCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCC-EEECCCCcCCc----cCHHHhcCcCCCCEEECCCCc
Confidence 555666 66666543221 111335667888888888774
No 28
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=2.4e-14 Score=144.28 Aligned_cols=173 Identities=21% Similarity=0.261 Sum_probs=137.4
Q ss_pred ceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccc-ccCCC
Q 039885 473 KLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE-IEKLI 551 (674)
Q Consensus 473 ~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~-i~~L~ 551 (674)
..+.+.++++.+..+|..+. ++++.|++++|. +....+..|.++++|++|+| ++|.++.+|.. +.+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l-------~~n~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYL-------NDNKLQTLPAGIFKELK 85 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEEC-------CSSCCSCCCTTTTSSCT
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEEC-------CCCccCeeChhhhcCCC
Confidence 45678888888888887554 689999999998 77767778999999999999 99999998865 48899
Q ss_pred CCcceeecCCCCcccccc-ccCCCcccEEEecccccccccccc-ccccCccCCeeeeeeeCccCCCCCCCCCCCChhhcc
Q 039885 552 HLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLG 629 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 629 (674)
+|++|+|++|.++.+|.. +..+++|++|++++| .+..+|. .+..+++|++|++..|.+.. .+ ...+.
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~--~~~~~ 154 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN--QLKSLPPRVFDSLTKLTYLSLGYNELQS-------LP--KGVFD 154 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCC-------CC--TTTTT
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCC--ccCeeCHHHhCcCcCCCEEECCCCcCCc-------cC--HhHcc
Confidence 999999999999999875 589999999999999 5667765 48999999999997776443 22 22355
Q ss_pred CcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 630 QLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 630 ~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.+++|+ .|.+++..-.. ..+..+.++++|+.|+|+.|+
T Consensus 155 ~l~~L~-~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 155 KLTSLK-ELRLYNNQLKR----VPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp TCTTCC-EEECCSSCCSC----CCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccc-eeEecCCcCcE----eChhHhccCCCcCEEECCCCc
Confidence 666677 77777653221 122347788999999999884
No 29
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=4.1e-14 Score=142.68 Aligned_cols=124 Identities=22% Similarity=0.320 Sum_probs=68.0
Q ss_pred ceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cccCCC
Q 039885 473 KLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EIEKLI 551 (674)
Q Consensus 473 ~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i~~L~ 551 (674)
.++.+.+.++.+..++ .+..+++|+.|++++|. +.+ ++ .+..+++|++|+| ++|.++.+|. .+++++
T Consensus 42 ~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~--l~~-~~-~l~~l~~L~~L~L-------~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK--LHD-IS-ALKELTNLTYLIL-------TGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC--CCC-CG-GGTTCTTCCEEEC-------TTSCCCCCCTTTTTTCT
T ss_pred ceeeeeeCCCCccccc-ccccCCCCcEEECCCCC--CCC-ch-hhcCCCCCCEEEC-------CCCccCccChhHhcCCc
Confidence 4555555555554443 35556666666666555 433 22 3555666666666 5665555443 345566
Q ss_pred CCcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeC
Q 039885 552 HLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVG 610 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~ 610 (674)
+|++|+|++|.++.+|+. ++.+++|++|++++| .+..+|.. ++.+++|++|++..|.
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN--QLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCC--ccCccCHHHhccCccCCEEECCCCC
Confidence 666666666665555543 455666666666665 34444433 4556666666665444
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.51 E-value=9.4e-14 Score=152.00 Aligned_cols=177 Identities=23% Similarity=0.244 Sum_probs=132.7
Q ss_pred CCCceeEEEEEcCCcCCc-cccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cc
Q 039885 470 PKEKLRHSMLMLGFEASF-PDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i 547 (674)
.+..++.|++++|.+..+ |..+.++++|++|++++|. +....|..|.++++|++|+| ++|.+..+|. .+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~ 100 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI--VSAVEPGAFNNLFNLRTLGL-------RSNRLKLIPLGVF 100 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEEC-------CSSCCCSCCTTSS
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc--cCEeChhhhhCCccCCEEEC-------CCCcCCccCcccc
Confidence 467899999999998776 4578899999999999998 77777888999999999999 9999999875 47
Q ss_pred cCCCCCcceeecCCCCccc-cccccCCCcccEEEecccccccccc-ccccccCccCCeeeeeeeCccCCCCCCCCCCCCh
Q 039885 548 EKLIHLRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRL-PHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKL 625 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 625 (674)
+++++|++|+|++|.+..+ |..+.++++|++|++++| .+..+ |..|.++++|++|++..|.++. ...
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~ 169 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN--DLVYISHRAFSGLNSLEQLTLEKCNLTS---------IPT 169 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT--TCCEECTTSSTTCTTCCEEEEESCCCSS---------CCH
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCC--ccceeChhhccCCCCCCEEECCCCcCcc---------cCh
Confidence 8999999999999998866 557899999999999998 45555 5678999999999997776333 122
Q ss_pred hhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeec
Q 039885 626 EVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFD 671 (674)
Q Consensus 626 ~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~ 671 (674)
..+.++++|+ .|.+.++.... .....+.++++|+.|+|+.|
T Consensus 170 ~~l~~l~~L~-~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 170 EALSHLHGLI-VLRLRHLNINA----IRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp HHHTTCTTCC-EEEEESCCCCE----ECTTCSCSCTTCCEEEEECC
T ss_pred hHhcccCCCc-EEeCCCCcCcE----eChhhcccCcccceeeCCCC
Confidence 3355556666 66666543211 11233455555555555554
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=1.7e-14 Score=167.11 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=95.2
Q ss_pred CCceeEEEEEcCCcCC------------------cccccc--CCCCceEEEecCCCcccccchhHhhccCCceeEEEecc
Q 039885 471 KEKLRHSMLMLGFEAS------------------FPDSLL--NAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVA 530 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~------------------~p~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~ 530 (674)
.++++.|.+++|.+.. +|..+. ++++|+.|++++|. +.+.+|..|.++++|+.|+|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~--l~~~iP~~l~~L~~L~~L~L-- 522 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP--NMTQLPDFLYDLPELQSLNI-- 522 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT--TCCSCCGGGGGCSSCCEEEC--
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC--CCccChHHHhCCCCCCEEEC--
Confidence 4567888888887766 777766 78888888888776 66667777888888888888
Q ss_pred ccccccccc-ccc--ccccccCCC-------CCcceeecCCCCccccc--cccCCCcccEEEeccccccccccccccccC
Q 039885 531 HDRRWSRGM-IRE--IPKEIEKLI-------HLRFLQLRDLMIDELPE--TCCELFNLQTLEIRQRGYYLRRLPHGFGRL 598 (674)
Q Consensus 531 ~~~~~~~~~-l~~--lp~~i~~L~-------~Lr~L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L 598 (674)
++|. +++ +|..|+++. +|++|+|++|.++.+|. .++++++|++|+|++| .+..+| .++++
T Consensus 523 -----s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N--~l~~lp-~~~~L 594 (876)
T 4ecn_A 523 -----ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN--KVRHLE-AFGTN 594 (876)
T ss_dssp -----TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS--CCCBCC-CCCTT
T ss_pred -----cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC--Ccccch-hhcCC
Confidence 7776 664 776666655 77777777777777777 7777777777777777 455777 77777
Q ss_pred ccCCeeeeeeeC
Q 039885 599 VNLRHLSEFVVG 610 (674)
Q Consensus 599 ~~L~~L~l~~~~ 610 (674)
++|++|++..|.
T Consensus 595 ~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 595 VKLTDLKLDYNQ 606 (876)
T ss_dssp SEESEEECCSSC
T ss_pred CcceEEECcCCc
Confidence 777777776555
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=1.9e-14 Score=147.85 Aligned_cols=179 Identities=18% Similarity=0.121 Sum_probs=96.6
Q ss_pred CCCceeEEEEEcCCcCCcccc-ccCCCCceEEEecCCCccccc--chhHhhccCCceeEEEecccccccccccccccccc
Q 039885 470 PKEKLRHSMLMLGFEASFPDS-LLNAKKLRSFLISSPYDVFSS--VLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE 546 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~ 546 (674)
.++.+++|.+.+|.+..+|.. +.++++|+.|++++|. +.. ..+..+..+++|++|+| ++|.+..+|..
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~L~~L~L-------s~n~i~~l~~~ 96 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG--LSFKGCCSQSDFGTTSLKYLDL-------SFNGVITMSSN 96 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCEEEEEEHHHHSCSCCCEEEC-------CSCSEEEEEEE
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc--cCcccCcccccccccccCEEEC-------CCCccccChhh
Confidence 345677788877777766654 5677777777777776 332 12344455666666666 55555555555
Q ss_pred ccCCCCCcceeecCCCCccccc--cccCCCcccEEEeccccccccc-------------------------cccccccCc
Q 039885 547 IEKLIHLRFLQLRDLMIDELPE--TCCELFNLQTLEIRQRGYYLRR-------------------------LPHGFGRLV 599 (674)
Q Consensus 547 i~~L~~Lr~L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~~~~~-------------------------lP~~i~~L~ 599 (674)
+..+++|++|++++|.++.+|. .+..+++|++|++++| ..... +|..+..++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 5555555555555555554443 3444555555555544 22222 444455555
Q ss_pred cCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 600 NLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 600 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+|++|++..|.++. ..+..+..+++|+ .|.++++.... .....+..+++|+.|+|++|+
T Consensus 176 ~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~-~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 176 NLTFLDLSQCQLEQ---------LSPTAFNSLSSLQ-VLNMSHNNFFS----LDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TCCEEECTTSCCCE---------ECTTTTTTCTTCC-EEECTTSCCSB----CCSGGGTTCTTCCEEECTTSC
T ss_pred CCCEEECCCCCcCC---------cCHHHhcCCCCCC-EEECCCCccCc----cChhhccCcccCCEeECCCCC
Confidence 55555554333211 1123344455555 56555543211 111235666778888877764
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=3.4e-14 Score=145.90 Aligned_cols=177 Identities=21% Similarity=0.204 Sum_probs=139.5
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchh-HhhccCCceeEEEecccccccccccccc-cccccc
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLP-RLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIE 548 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~ 548 (674)
...+++|.+++|.+..+|..+..+++|++|++++|. +....+ ..+..+++|++|++ ++|.+.. .|..++
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l-------~~n~l~~~~~~~~~ 147 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDI-------SHTHTRVAFNGIFN 147 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE--EESSTTTTTTTTCTTCCEEEC-------TTSCCEECSTTTTT
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEECCCCc--ccccccchhhhhccCCCEEEC-------CCCcCCccchhhcc
Confidence 467888888888888788888889999999999887 665444 56889999999999 9998887 567789
Q ss_pred CCCCCcceeecCCCCcc--ccccccCCCcccEEEecccccccccc-ccccccCccCCeeeeeeeCccCCCCCCCCCCCCh
Q 039885 549 KLIHLRFLQLRDLMIDE--LPETCCELFNLQTLEIRQRGYYLRRL-PHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKL 625 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~--lP~~i~~L~~L~~L~l~~~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 625 (674)
++++|++|+|++|.+.. +|..+..+++|++|++++| .+..+ |..+..+++|++|++..|.+.. . ..
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~--~~ 216 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--QLEQLSPTAFNSLSSLQVLNMSHNNFFS-------L--DT 216 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCSB-------C--CS
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC--CcCCcCHHHhcCCCCCCEEECCCCccCc-------c--Ch
Confidence 99999999999999875 8999999999999999999 46666 7789999999999997776433 1 22
Q ss_pred hhccCcccCCCeeEEeccCCCCChhhhhhccCCcc-CCCCeEEEeecC
Q 039885 626 EVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENK-MNLLHLGLGFDK 672 (674)
Q Consensus 626 ~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~-~~L~~L~L~~~~ 672 (674)
..+..+++|+ .|+++++.... ..+..+..+ ++|+.|+|+.|+
T Consensus 217 ~~~~~l~~L~-~L~L~~N~l~~----~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 217 FPYKCLNSLQ-VLDYSLNHIMT----SKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp GGGTTCTTCC-EEECTTSCCCB----CSSSSCCCCCTTCCEEECTTCC
T ss_pred hhccCcccCC-EeECCCCCCcc----cCHHHHHhhhccCCEEEccCCC
Confidence 2356677777 78887764322 233456666 489999998874
No 34
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=2.8e-14 Score=140.91 Aligned_cols=132 Identities=17% Similarity=0.292 Sum_probs=95.6
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccc-ccccccc-cc
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSR-GMIREIP-KE 546 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~-~~l~~lp-~~ 546 (674)
.+..++++.+++|.+..+|. .+.++++|++|++++|. .+....+..|.++++|++|++ ++ |.++.+| ..
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-~l~~i~~~~f~~l~~L~~L~l-------~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-TLQQLESHSFYNLSKVTHIEI-------RNTRNLTYIDPDA 100 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS-SCCEECTTTEESCTTCCEEEE-------EEETTCCEECTTS
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC-CcceeCHhHcCCCcCCcEEEC-------CCCCCeeEcCHHH
Confidence 45578888888888776665 56778888888888773 034444556778888888888 77 7777765 46
Q ss_pred ccCCCCCcceeecCCCCccccccccCCCccc---EEEeccccccccccccc-cccCccCC-eeeeeeeCc
Q 039885 547 IEKLIHLRFLQLRDLMIDELPETCCELFNLQ---TLEIRQRGYYLRRLPHG-FGRLVNLR-HLSEFVVGI 611 (674)
Q Consensus 547 i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~---~L~l~~~~~~~~~lP~~-i~~L~~L~-~L~l~~~~~ 611 (674)
+.++++|++|++++|.++.+|. ++.+++|+ +|++++| ..+..+|.. |.++++|+ +|++..|.+
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N-~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDN-PYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESC-TTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCC-cchhhcCcccccchhcceeEEEcCCCCC
Confidence 7778888888888888777776 77777776 8888877 456777654 77778888 777765553
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.49 E-value=8.2e-14 Score=154.22 Aligned_cols=120 Identities=20% Similarity=0.178 Sum_probs=59.6
Q ss_pred EEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccc-cccccCCCCCc
Q 039885 476 HSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREI-PKEIEKLIHLR 554 (674)
Q Consensus 476 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~l-p~~i~~L~~Lr 554 (674)
+++++++.+..+|..+. ++|+.|++++|. +.+..|..|.++++|++|+| ++|.+.++ |..|+++++|+
T Consensus 4 ~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS--QKTTILNISQNY--ISELWTSDILSLSKLRILII-------SHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp EEECTTSCCSSCCCSCC--TTCSEEECCSSC--CCCCCHHHHTTCTTCCEEEC-------CSSCCCEEEGGGGTTCTTCC
T ss_pred eEecCCCCccccccccc--ccccEEECCCCc--ccccChhhccccccccEEec-------CCCccCCcChHHhhcccCCC
Confidence 34444454444444333 455555555554 44444444555555555555 55555543 44555555555
Q ss_pred ceeecCCCCccccccccCCCcccEEEecccccccc--ccccccccCccCCeeeeeeeC
Q 039885 555 FLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLR--RLPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 555 ~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~--~lP~~i~~L~~L~~L~l~~~~ 610 (674)
+|+|++|.++.+|.. .+++|++|++++| .+. .+|..++++++|++|++..|.
T Consensus 73 ~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N--~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 73 YLDLSHNKLVKISCH--PTVNLKHLDLSFN--AFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp EEECCSSCCCEEECC--CCCCCSEEECCSS--CCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred EEecCCCceeecCcc--ccCCccEEeccCC--ccccccchhhhccCCcceEEEecCcc
Confidence 555555555555544 4555555555555 222 234455555555555554443
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.49 E-value=4.6e-14 Score=157.35 Aligned_cols=134 Identities=18% Similarity=0.211 Sum_probs=117.1
Q ss_pred CCCceeEEEEEcCCcCCc-cccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cc
Q 039885 470 PKEKLRHSMLMLGFEASF-PDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i 547 (674)
.++.+++|++++|.+..+ |..+.++++|++|++++|. +....|..|.++++|++|+| ++|.+.++|. .|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~~~ 94 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR--INTIEGDAFYSLGSLEHLDL-------SDNHLSSLSSSWF 94 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEEC-------TTSCCCSCCHHHH
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC--cCccChhhccccccCCEEEC-------CCCccCccCHHHh
Confidence 356899999999998765 4678999999999999998 77777788999999999999 9999999665 49
Q ss_pred cCCCCCcceeecCCCCcc--ccccccCCCcccEEEeccccccccccc-cccccCccCCeeeeeeeCccC
Q 039885 548 EKLIHLRFLQLRDLMIDE--LPETCCELFNLQTLEIRQRGYYLRRLP-HGFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~--lP~~i~~L~~L~~L~l~~~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~ 613 (674)
+++++|++|+|++|.++. +|..++++++|++|++++| ..++.+| ..++++++|++|++..|.++.
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV-ETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES-SSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCC-ccccccCHhhhhcccccCeeeccCCcccc
Confidence 999999999999999884 5778999999999999999 5578887 479999999999998877443
No 37
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=1.5e-13 Score=136.79 Aligned_cols=173 Identities=18% Similarity=0.190 Sum_probs=124.8
Q ss_pred ceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccCCC
Q 039885 473 KLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEKLI 551 (674)
Q Consensus 473 ~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L~ 551 (674)
..+++.+.++.+..+|..+. ++++.|++++|. +....+..|.++++|++|+| ++|.+..+| ..+.+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~~~l~ 83 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG--LATLSDATFRGLTKLTWLNL-------DYNQLQTLSAGVFDDLT 83 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC--CCCCCTTTTTTCTTCCEEEC-------TTSCCCCCCTTTTTTCT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCC--cCccCHhHhcCcccCCEEEC-------CCCcCCccCHhHhccCC
Confidence 34567777777777776554 578888888887 77767777888888888888 888888854 4578888
Q ss_pred CCcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCccCCCCCCCCCCCChhhcc
Q 039885 552 HLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLG 629 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 629 (674)
+|++|+|++|.++.+|.. +..+++|++|+|++| .+..+|.. +..+++|++|++..|.++. .+. ..+.
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~--~~~~ 152 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN--QLKSLPSGVFDRLTKLKELRLNTNQLQS-------IPA--GAFD 152 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCC-------CCT--TTTT
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCC--cCCCcChhHhccCCcccEEECcCCcCCc-------cCH--HHcC
Confidence 888888888888877754 578888888888888 57777765 6788888888887766433 221 2345
Q ss_pred CcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 630 QLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 630 ~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.+.+|+ .|.++++.-.. ..+..+.++++|+.|+|+.|+
T Consensus 153 ~l~~L~-~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 153 KLTNLQ-TLSLSTNQLQS----VPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCC-EEECCSSCCSC----CCTTTTTTCTTCCEEECCSCC
T ss_pred cCcCCC-EEECCCCcCCc----cCHHHHhCCCCCCEEEeeCCc
Confidence 555666 67676643221 122356677888888888774
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.48 E-value=7.4e-14 Score=151.70 Aligned_cols=175 Identities=19% Similarity=0.251 Sum_probs=105.3
Q ss_pred CceeEEEEEcCCcCCcccc-ccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccc-ccccccc-ccc
Q 039885 472 EKLRHSMLMLGFEASFPDS-LLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRG-MIREIPK-EIE 548 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~-~l~~lp~-~i~ 548 (674)
.++++|.+++|.+..+|.. +..+++|+.|++++|. +....+..|.++++|+.|++ ++| .+..+|. .+.
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l-------~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP--IESIPSYAFNRVPSLMRLDL-------GELKKLEYISEGAFE 193 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEEC-------CCCTTCCEECTTTTT
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC--cceeCHhHHhcCCcccEEeC-------CCCCCccccChhhcc
Confidence 4455555555555544432 4455555555555555 44444445555666666666 542 3444443 466
Q ss_pred CCCCCcceeecCCCCccccccccCCCcccEEEecccccccccc-ccccccCccCCeeeeeeeCccCCCCCCCCCCCChhh
Q 039885 549 KLIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRL-PHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEV 627 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 627 (674)
++.+|++|+|++|.++.+| .+..+++|++|+|++| .+..+ |..|.++++|++|++..|.+.. .....
T Consensus 194 ~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~ 261 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN--HFPEIRPGSFHGLSSLKKLWVMNSQVSL---------IERNA 261 (452)
T ss_dssp TCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTS--CCSEECGGGGTTCTTCCEEECTTSCCCE---------ECTTT
T ss_pred CCCCCCEEECCCCcccccc-cccccccccEEECcCC--cCcccCcccccCccCCCEEEeCCCcCce---------ECHHH
Confidence 7777777777777777776 4677777888888877 34444 6667888888888886655333 12233
Q ss_pred ccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 628 LGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 628 L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+..+.+|+ .|.++++.-. . .....+..+++|+.|+|+.|+
T Consensus 262 ~~~l~~L~-~L~L~~N~l~-~---~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 FDGLASLV-ELNLAHNNLS-S---LPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTCTTCC-EEECCSSCCS-C---CCTTSSTTCTTCCEEECCSSC
T ss_pred hcCCCCCC-EEECCCCcCC-c---cChHHhccccCCCEEEccCCC
Confidence 55566666 6777665322 1 122345677888888888774
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.48 E-value=1.4e-14 Score=164.06 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=54.6
Q ss_pred cccccc--CCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccc-ccc--ccccccCC------CCCcc
Q 039885 487 FPDSLL--NAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGM-IRE--IPKEIEKL------IHLRF 555 (674)
Q Consensus 487 ~p~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~-l~~--lp~~i~~L------~~Lr~ 555 (674)
+|..+. ++++|++|++++|. +.+.+|..|.++++|++|++ ++|. +++ +|..+++| ++|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L-------s~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCP--NLTKLPTFLKALPEMQLINV-------ACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCT--TCSSCCTTTTTCSSCCEEEC-------TTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred CchhhhhcccCCCCEEEecCCc--CCccChHHHhcCCCCCEEEC-------cCCCCCccccchHHHHhhhccccCCCCCE
Confidence 555555 55555555555554 44444545555555555555 5554 443 44444444 45555
Q ss_pred eeecCCCCccccc--cccCCCcccEEEeccccccccccccccccCccCCeeeeee
Q 039885 556 LQLRDLMIDELPE--TCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFV 608 (674)
Q Consensus 556 L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~ 608 (674)
|+|++|.++.+|. .++++++|++|++++| ...+.+| .++.+++|++|++..
T Consensus 310 L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp EECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-CCEEEEEESEEECCS
T ss_pred EECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-hhCCCCCCCEEECCC
Confidence 5555555445554 4555555555555554 2222444 444444444444433
No 40
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=1.8e-13 Score=130.81 Aligned_cols=147 Identities=13% Similarity=0.121 Sum_probs=113.1
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccccccC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIEK 549 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~~ 549 (674)
...++++.+++|.+..+| .+..+++|++|++++|. +.. ++ .+..+++|++|++ ++|.+.. .|..++.
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~--~~~-~~-~l~~l~~L~~L~l-------~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH--ATN-YN-PISGLSNLERLRI-------MGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC--CSC-CG-GGTTCTTCCEEEE-------ECTTCBGGGSCCCTT
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC--CCc-ch-hhhcCCCCCEEEe-------ECCccCcccChhhcC
Confidence 356888999998888777 68888999999998886 443 23 5788899999999 8888886 7788889
Q ss_pred CCCCcceeecCCCCc-cccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhc
Q 039885 550 LIHLRFLQLRDLMID-ELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVL 628 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 628 (674)
+++|++|+|++|.++ ..|..++.+++|++|++++| ..+..+| .+..+++|++|++..|.++. . ..+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n-~~i~~~~-~l~~l~~L~~L~l~~n~i~~-------~----~~l 177 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN-GAITDIM-PLKTLPELKSLNIQFDGVHD-------Y----RGI 177 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC-TBCCCCG-GGGGCSSCCEEECTTBCCCC-------C----TTG
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC-CCccccH-hhcCCCCCCEEECCCCCCcC-------h----HHh
Confidence 999999999999887 47778889999999999988 4477887 68888899999886665322 1 144
Q ss_pred cCcccCCCeeEEecc
Q 039885 629 GQLRHLRGSLRIRGL 643 (674)
Q Consensus 629 ~~L~~L~g~L~i~~l 643 (674)
..+++|+ .|.+.++
T Consensus 178 ~~l~~L~-~L~l~~N 191 (197)
T 4ezg_A 178 EDFPKLN-QLYAFSQ 191 (197)
T ss_dssp GGCSSCC-EEEECBC
T ss_pred ccCCCCC-EEEeeCc
Confidence 4555555 6666553
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.48 E-value=1.3e-13 Score=146.80 Aligned_cols=131 Identities=16% Similarity=0.186 Sum_probs=106.1
Q ss_pred CCceeEEEEEcCCcCCcccc-ccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-cccc
Q 039885 471 KEKLRHSMLMLGFEASFPDS-LLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIE 548 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~ 548 (674)
...++++.+.++.+..+|.. +..+++|++|++++|. +....+..|..+++|++|+| ++|.+..+| ..++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYM-------GFNAIRYLPPHVFQ 114 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC--CCEECTTTTTTCTTCCEEEC-------CSSCCCCCCTTTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc--ccccChhhccCCCCcCEEEC-------CCCCCCcCCHHHhc
Confidence 36788899998888878765 5778899999998887 76666667888999999999 888888854 5688
Q ss_pred CCCCCcceeecCCCCccccccc-cCCCcccEEEecccccccccc-ccccccCccCCeeeeeeeCcc
Q 039885 549 KLIHLRFLQLRDLMIDELPETC-CELFNLQTLEIRQRGYYLRRL-PHGFGRLVNLRHLSEFVVGIT 612 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~lP~~i-~~L~~L~~L~l~~~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~ 612 (674)
++++|++|+|++|.++.+|..+ +++++|++|++++| .+..+ |..+.++++|++|++..|.++
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN--NLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC--ccCccChhhccCCCCCCEEECCCCcCC
Confidence 8999999999999988888874 88899999999988 45555 445888899999988766643
No 42
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=1.1e-13 Score=135.62 Aligned_cols=131 Identities=24% Similarity=0.333 Sum_probs=101.4
Q ss_pred CCCceeEEEEEcCCcCCc-cccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccc-c
Q 039885 470 PKEKLRHSMLMLGFEASF-PDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE-I 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~-i 547 (674)
.+..+++|.+++|.+..+ |..+..+++|+.|++++|. +....+..|..+++|++|+| ++|.++.+|.. +
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~--l~~i~~~~~~~l~~L~~L~L-------s~N~l~~l~~~~~ 108 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ--LGALPVGVFDSLTQLTVLDL-------GTNQLTVLPSAVF 108 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEEC-------CSSCCCCCCTTTT
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC--CCCcChhhcccCCCcCEEEC-------CCCcCCccChhHh
Confidence 456788888888887665 4567788888888888887 66666666788888888888 88888886644 5
Q ss_pred cCCCCCcceeecCCCCccccccccCCCcccEEEecccccccccccc-ccccCccCCeeeeeeeCc
Q 039885 548 EKLIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSEFVVGI 611 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l~~~~~ 611 (674)
+.+.+|++|+|++|.++.+|..+..+++|++|+|++| .+..+|. .+..+++|++|++..|.+
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN--QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CcchhhCeEeccCCcccccCcccccCCCCCEEECCCC--cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 7888888888888888888888888888888888888 5667764 477888888888866553
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=145.44 Aligned_cols=169 Identities=20% Similarity=0.182 Sum_probs=137.3
Q ss_pred EEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccc-cccccCCCCCcc
Q 039885 477 SMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREI-PKEIEKLIHLRF 555 (674)
Q Consensus 477 l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~l-p~~i~~L~~Lr~ 555 (674)
...+++.+..+|..+. ++|+.|++++|. +....+..|.++++|++|++ ++|.+..+ |..++++++|++
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVL-------TSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSC--CCEECTTTTTTCTTCCEEEC-------TTSCCCEECTTTTTTCTTCCE
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCc--CcccCHHHhccCCCCCEEEC-------CCCccCccCHhhcCCCCCCCE
Confidence 6667778888887654 589999999998 77766668999999999999 99999985 567999999999
Q ss_pred eeecCCCCcccccc-ccCCCcccEEEecccccccccccc--ccccCccCCeeeeeeeC-ccCCCCCCCCCCCChhhccCc
Q 039885 556 LQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPH--GFGRLVNLRHLSEFVVG-ITGSRNDSRSRGCKLEVLGQL 631 (674)
Q Consensus 556 L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~--~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L 631 (674)
|+|++|.++.+|.. ++++++|++|++++| .+..+|. .+.++++|++|++..|. +.. .....+..+
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~---------~~~~~~~~l 173 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGN--PYKTLGETSLFSHLTKLQILRVGNMDTFTK---------IQRKDFAGL 173 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTC--CCSSSCSSCSCTTCTTCCEEEEEESSSCCE---------ECTTTTTTC
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCC--CCcccCchhhhccCCCCcEEECCCCccccc---------cCHHHccCC
Confidence 99999999999987 899999999999999 6888987 68999999999998774 212 122345566
Q ss_pred ccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 632 RHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 632 ~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
++|+ .|.+++.... ...+..+.++++|+.|+|++|+
T Consensus 174 ~~L~-~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 174 TFLE-ELEIDASDLQ----SYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CEEE-EEEEEETTCC----EECTTTTTTCSEEEEEEEECSC
T ss_pred CCCC-EEECCCCCcC----ccCHHHHhccccCCeecCCCCc
Confidence 6666 7777765422 2234568889999999999885
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.47 E-value=8.4e-14 Score=150.71 Aligned_cols=176 Identities=19% Similarity=0.263 Sum_probs=118.8
Q ss_pred CCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccc-ccccccc-cc
Q 039885 471 KEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRG-MIREIPK-EI 547 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~-~l~~lp~-~i 547 (674)
..++++|.+++|.+..+|. .+..+++|+.|++++|. +....+..|..+++|+.|+| ++| .+..+|. .+
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l-------~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDL-------GELKRLSYISEGAF 181 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEEC-------CCCTTCCEECTTTT
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCC-------CCCCCcceeCcchh
Confidence 3567777777776666554 46667777777777776 55555556777777777777 663 3555554 57
Q ss_pred cCCCCCcceeecCCCCccccccccCCCcccEEEecccccccccc-ccccccCccCCeeeeeeeCccCCCCCCCCCCCChh
Q 039885 548 EKLIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRL-PHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLE 626 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 626 (674)
.++.+|++|+|++|.++.+| .+..+++|++|+|++| .+..+ |..|.++++|++|++..|.++. ....
T Consensus 182 ~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~ 249 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN--HLSAIRPGSFQGLMHLQKLWMIQSQIQV---------IERN 249 (440)
T ss_dssp TTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCE---------ECTT
T ss_pred hcccccCeecCCCCcCcccc-ccCCCcccCEEECCCC--ccCccChhhhccCccCCEEECCCCceeE---------EChh
Confidence 77888888888888888887 4778888888888888 45555 6678888888888886665433 1223
Q ss_pred hccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 627 VLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 627 ~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.+.++++|+ .|.++++.-.. .....+..+++|+.|+|+.|+
T Consensus 250 ~~~~l~~L~-~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 250 AFDNLQSLV-EINLAHNNLTL----LPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp SSTTCTTCC-EEECTTSCCCC----CCTTTTSSCTTCCEEECCSSC
T ss_pred hhcCCCCCC-EEECCCCCCCc----cChhHhccccCCCEEEcCCCC
Confidence 455566666 77776653221 122346677889999998774
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=3.1e-14 Score=164.85 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=81.6
Q ss_pred ccccccCCCCceEEEecCCCccccc-----------------chhHhhc--cCCceeEEEecccccccccccccc-cccc
Q 039885 487 FPDSLLNAKKLRSFLISSPYDVFSS-----------------VLPRLFD--QLTCLRTLKIVAHDRRWSRGMIRE-IPKE 546 (674)
Q Consensus 487 ~p~~~~~l~~L~~L~l~~~~~~~~~-----------------~~~~~~~--~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~ 546 (674)
+|..+.++++|+.|++++|. +.+ .+|..++ ++++|++|+| ++|.+.+ +|..
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~--Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L-------s~N~l~~~iP~~ 510 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL-------YNCPNMTQLPDF 510 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE-------ESCTTCCSCCGG
T ss_pred hhHHHhcCCCCCEEECcCCc--CCCCcccccccccccccccccCChhhhhccCCCCCEEEC-------cCCCCCccChHH
Confidence 44445555555555555554 433 1344444 5555555555 5554333 5555
Q ss_pred ccCCCCCcceeecCCC-Cc--cccccccCCC-------cccEEEecccccccccccc--ccccCccCCeeeeeeeCccCC
Q 039885 547 IEKLIHLRFLQLRDLM-ID--ELPETCCELF-------NLQTLEIRQRGYYLRRLPH--GFGRLVNLRHLSEFVVGITGS 614 (674)
Q Consensus 547 i~~L~~Lr~L~L~~~~-i~--~lP~~i~~L~-------~L~~L~l~~~~~~~~~lP~--~i~~L~~L~~L~l~~~~~~~~ 614 (674)
|++|++|++|+|++|. ++ .+|..++++. +|++|+|++| .+..+|. .++++++|++|++..|.++.
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N--~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~- 587 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN--NLEEFPASASLQKMVKLGLLDCVHNKVRH- 587 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS--CCCBCCCHHHHTTCTTCCEEECTTSCCCB-
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC--cCCccCChhhhhcCCCCCEEECCCCCccc-
Confidence 5555555555555554 44 2555444443 5555555555 3445555 55555566666554443211
Q ss_pred CCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCC-CCeEEEeecC
Q 039885 615 RNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMN-LLHLGLGFDK 672 (674)
Q Consensus 615 ~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~-L~~L~L~~~~ 672 (674)
.+ .+.++++|+ .|.++++... ..+..+.++++ |+.|+|+.|+
T Consensus 588 ------lp----~~~~L~~L~-~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 588 ------LE----AFGTNVKLT-DLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ------CC----CCCTTSEES-EEECCSSCCS-----CCCTTSCEECTTCCEEECCSSC
T ss_pred ------ch----hhcCCCcce-EEECcCCccc-----cchHHHhhccccCCEEECcCCC
Confidence 11 444455555 5555543321 23344666666 7777777664
No 46
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=1e-13 Score=155.05 Aligned_cols=165 Identities=18% Similarity=0.190 Sum_probs=96.5
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLI 551 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~ 551 (674)
..++.|.+..+.+..+| .+..+++|+.|++++|. +....| +..+++|+.|+| ++|.+..+| .++.|+
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~L-------s~N~l~~l~-~l~~l~ 109 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK--LTDIKP--LTNLKNLGWLFL-------DENKIKDLS-SLKDLK 109 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC--CCCCGG--GGGCTTCCEEEC-------CSSCCCCCT-TSTTCT
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC--CCCChh--hccCCCCCEEEC-------cCCCCCCCh-hhccCC
Confidence 34555666666665554 45666666777666665 544333 666666677776 666666655 566666
Q ss_pred CCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCc
Q 039885 552 HLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQL 631 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 631 (674)
+|++|+|++|.+..+| .++.|++|+.|+|++| .+..+ ..+..|++|++|++..|.+.. .. . +..|
T Consensus 110 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N--~l~~l-~~l~~l~~L~~L~Ls~N~l~~-------~~---~-l~~l 174 (605)
T 1m9s_A 110 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN--KITDI-TVLSRLTKLDTLSLEDNQISD-------IV---P-LAGL 174 (605)
T ss_dssp TCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS--CCCCC-GGGGSCTTCSEEECCSSCCCC-------CG---G-GTTC
T ss_pred CCCEEEecCCCCCCCc-cccCCCccCEEECCCC--ccCCc-hhhcccCCCCEEECcCCcCCC-------ch---h-hccC
Confidence 6677777666666654 3666666667776666 45555 346666666666665554322 11 1 4455
Q ss_pred ccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeec
Q 039885 632 RHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFD 671 (674)
Q Consensus 632 ~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~ 671 (674)
++|+ .|.++++.. ... ..|..+++|+.|+|+.|
T Consensus 175 ~~L~-~L~Ls~N~i-~~l-----~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 175 TKLQ-NLYLSKNHI-SDL-----RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp TTCC-EEECCSSCC-CBC-----GGGTTCTTCSEEECCSE
T ss_pred CCCC-EEECcCCCC-CCC-----hHHccCCCCCEEEccCC
Confidence 5555 555555422 111 23556666666666655
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=9.3e-14 Score=140.05 Aligned_cols=155 Identities=22% Similarity=0.324 Sum_probs=128.1
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-ccc
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EIE 548 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i~ 548 (674)
..+.+++|.+++|.+..++ .+..+++|++|++++|. +....+..|..+++|++|+| ++|.+..+|. .++
T Consensus 61 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~~ 130 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ--LQSLPNGVFDKLTNLKELVL-------VENQLQSLPDGVFD 130 (272)
T ss_dssp GCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEEC-------TTSCCCCCCTTTTT
T ss_pred cCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc--cCccChhHhcCCcCCCEEEC-------CCCcCCccCHHHhc
Confidence 3578999999999988765 78899999999999998 77777777899999999999 9999999765 479
Q ss_pred CCCCCcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCccCCCCCCCCCCCChh
Q 039885 549 KLIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKLE 626 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 626 (674)
++++|++|+|++|.++.+|+. ++.+++|++|++++| .+..+|.. ++.+++|++|++..|.++. . ...
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~--~~~ 199 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN--QLQSLPEGVFDKLTQLKDLRLYQNQLKS-------V--PDG 199 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSC-------C--CTT
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC--CcCccCHHHhcCCccCCEEECCCCcCCc-------c--CHH
Confidence 999999999999999988876 589999999999999 56677665 6899999999998777443 1 223
Q ss_pred hccCcccCCCeeEEeccCCC
Q 039885 627 VLGQLRHLRGSLRIRGLGNV 646 (674)
Q Consensus 627 ~L~~L~~L~g~L~i~~l~~~ 646 (674)
.+..+++|+ .|.+.++...
T Consensus 200 ~~~~l~~L~-~L~l~~N~~~ 218 (272)
T 3rfs_A 200 VFDRLTSLQ-YIWLHDNPWD 218 (272)
T ss_dssp TTTTCTTCC-EEECCSSCBC
T ss_pred HHhCCcCCC-EEEccCCCcc
Confidence 356667777 7888776543
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.46 E-value=2.2e-13 Score=141.48 Aligned_cols=185 Identities=18% Similarity=0.194 Sum_probs=132.0
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccccc
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIE 548 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~ 548 (674)
.++.++.|.+++|.+..++. .+.++++|++|++++|. +....|..|.++++|++|++ ++|.++.+|..+.
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L-------s~n~l~~l~~~~~ 120 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYL-------SKNQLKELPEKMP 120 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEEC-------CSSCCSBCCSSCC
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc--CCeeCHHHhcCCCCCCEEEC-------CCCcCCccChhhc
Confidence 45688999999999887765 68899999999999998 77777888999999999999 9999888887765
Q ss_pred CCCCCcceeecCCCCccccc-cccCCCcccEEEecccccccc---ccccccccCccCCeeeeeeeCccCCCCC-------
Q 039885 549 KLIHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLR---RLPHGFGRLVNLRHLSEFVVGITGSRND------- 617 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~---~lP~~i~~L~~L~~L~l~~~~~~~~~~~------- 617 (674)
.+|++|++++|.++.+|. .++++++|++|++++| .+. ..|..+.++++|++|++..+.+......
T Consensus 121 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~ 196 (330)
T 1xku_A 121 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN--PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE 196 (330)
T ss_dssp --TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS--CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSE
T ss_pred --ccccEEECCCCcccccCHhHhcCCccccEEECCCC--cCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCE
Confidence 688888888888887765 4788888888888888 333 4466678888888888765554320000
Q ss_pred -----CCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 618 -----SRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 618 -----~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.......+..+..+++|+ .|.+++..-. ...+..+..+++|+.|+|+.|+
T Consensus 197 L~l~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 197 LHLDGNKITKVDAASLKGLNNLA-KLGLSFNSIS----AVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp EECTTSCCCEECTGGGTTCTTCC-EEECCSSCCC----EECTTTGGGSTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhcCCCCCC-EEECCCCcCc----eeChhhccCCCCCCEEECCCCc
Confidence 000111233455666666 6666654321 1122346677788888888774
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=1.3e-13 Score=155.22 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=89.9
Q ss_pred CceeEEEEEcCCcCCcccc-ccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccC
Q 039885 472 EKLRHSMLMLGFEASFPDS-LLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEK 549 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~ 549 (674)
..++.+.+.++.+..+|.. +.++++|++|++++|. +.+..|..|..+++|++|+| ++|.+..+| ..|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYM-------GFNAIRYLPPHVFQN 121 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC--CCEECTTTTTTCTTCCEEEC-------CSSCCCCCCTTTTTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC--CCCCChHHhcCCCCCCEEEC-------CCCcCCCCCHHHHcC
Confidence 4567777777777666654 4567777777777776 66656666777777777777 777777754 34577
Q ss_pred CCCCcceeecCCCCccccccc-cCCCcccEEEecccccccccc-ccccccCccCCeeeeeeeCc
Q 039885 550 LIHLRFLQLRDLMIDELPETC-CELFNLQTLEIRQRGYYLRRL-PHGFGRLVNLRHLSEFVVGI 611 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~~i-~~L~~L~~L~l~~~~~~~~~l-P~~i~~L~~L~~L~l~~~~~ 611 (674)
+++|++|+|++|.++.+|+.+ +++++|++|+|++| .+..+ |..|+++++|++|++..|.+
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN--NLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC--cCCCCChhhhhcCCcCcEEECcCCCC
Confidence 777777777777777777664 77777777777777 34444 44577777777777755553
No 50
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.46 E-value=1.4e-13 Score=149.54 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=112.9
Q ss_pred CCCceeEEEEEcCCcCCc-cccccCCCCceEEEecCCCcccc-cchhHhhccCCceeEEEecccccccccccccc-cccc
Q 039885 470 PKEKLRHSMLMLGFEASF-PDSLLNAKKLRSFLISSPYDVFS-SVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKE 546 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~ 546 (674)
.++.+++|++++|.+..+ |..+.++++|++|++++|. +. ...+..|.++++|++|+| ++|.+.. .|..
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--~~~~i~~~~~~~l~~L~~L~L-------s~n~l~~~~~~~ 98 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT--PGLVIRNNTFRGLSSLIILKL-------DYNQFLQLETGA 98 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS--TTCEECTTTTTTCTTCCEEEC-------TTCTTCEECTTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCc--ccceECcccccccccCCEEeC-------CCCccCccChhh
Confidence 568899999999998765 6778999999999999997 54 334667999999999999 9999988 4889
Q ss_pred ccCCCCCcceeecCCCCcc-cccc--ccCCCcccEEEecccccccccc-ccc-cccCccCCeeeeeeeCccC
Q 039885 547 IEKLIHLRFLQLRDLMIDE-LPET--CCELFNLQTLEIRQRGYYLRRL-PHG-FGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 547 i~~L~~Lr~L~L~~~~i~~-lP~~--i~~L~~L~~L~l~~~~~~~~~l-P~~-i~~L~~L~~L~l~~~~~~~ 613 (674)
++++++|++|+|++|.++. +|.. ++++++|++|++++| .+..+ |.. +.++++|++|++..|.+..
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN--NIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS--BCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC--ccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9999999999999999874 5555 899999999999999 45555 665 8999999999997776544
No 51
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=1.3e-13 Score=135.12 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=126.8
Q ss_pred eeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cccCCCC
Q 039885 474 LRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EIEKLIH 552 (674)
Q Consensus 474 ~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i~~L~~ 552 (674)
...+..+.+.+..+|..+. ++|+.|++++|. +.+..|..|..+++|++|+| ++|.+..+|. .++.+.+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L-------~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQ--ITKLEPGVFDSLINLKELYL-------GSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEEC-------CSSCCCCCCTTTTTTCTT
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCc--cCccCHHHhhCccCCcEEEC-------CCCCCCCcChhhcccCCC
Confidence 3457777777888887554 899999999998 88877888999999999999 9999999875 4689999
Q ss_pred CcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCc
Q 039885 553 LRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQL 631 (674)
Q Consensus 553 Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 631 (674)
|++|+|++|.++.+|.. +..+++|++|+|++| .+..+|..+..+++|++|++..|.++. .+ ...+..+
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~L~~N~l~~-------~~--~~~~~~l 158 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN--KLTELPRGIERLTHLTHLALDQNQLKS-------IP--HGAFDRL 158 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCSCCTTGGGCTTCSEEECCSSCCCC-------CC--TTTTTTC
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCC--cccccCcccccCCCCCEEECCCCcCCc-------cC--HHHHhCC
Confidence 99999999999999876 589999999999999 688999999999999999998777544 22 1345667
Q ss_pred ccCCCeeEEeccCCCCC
Q 039885 632 RHLRGSLRIRGLGNVKD 648 (674)
Q Consensus 632 ~~L~g~L~i~~l~~~~~ 648 (674)
++|+ .|.+.++....+
T Consensus 159 ~~L~-~L~l~~N~~~c~ 174 (229)
T 3e6j_A 159 SSLT-HAYLFGNPWDCE 174 (229)
T ss_dssp TTCC-EEECTTSCBCTT
T ss_pred CCCC-EEEeeCCCccCC
Confidence 7777 788887765544
No 52
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.45 E-value=1.2e-13 Score=156.40 Aligned_cols=178 Identities=16% Similarity=0.080 Sum_probs=114.8
Q ss_pred ceeEEEEEcCCcCC-cccccc-------CCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc
Q 039885 473 KLRHSMLMLGFEAS-FPDSLL-------NAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP 544 (674)
Q Consensus 473 ~~r~l~l~~~~~~~-~p~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp 544 (674)
.++.+.+++|.+.. .|..+. .+++|+.|++++|. +....+..+..+++|+.|+| ++|.+..+|
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l~~lp~~~~~~l~~L~~L~L-------s~N~l~~i~ 473 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--ISKFPKELFSTGSPLSSINL-------MGNMLTEIP 473 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--CCSCCTHHHHTTCCCSEEEC-------CSSCCSBCC
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--cCcCCHHHHccCCCCCEEEC-------CCCCCCCcC
Confidence 56777777776642 444454 56677777777776 55555555666777888888 777777777
Q ss_pred ccccCC--------CCCcceeecCCCCcccccccc--CCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCC
Q 039885 545 KEIEKL--------IHLRFLQLRDLMIDELPETCC--ELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGS 614 (674)
Q Consensus 545 ~~i~~L--------~~Lr~L~L~~~~i~~lP~~i~--~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~ 614 (674)
..+... ++|++|+|++|.++.+|..+. .+++|++|+|++| .+..+|..+.++++|++|++..|..-.
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~~l~~L~~L~Ls~N~~ls- 550 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN--SFSKFPTQPLNSSTLKGFGIRNQRDAQ- 550 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS--CCSSCCCGGGGCSSCCEEECCSCBCTT-
T ss_pred HHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC--CCCCcChhhhcCCCCCEEECCCCcccc-
Confidence 654432 278888888888888888776 7888888888887 455688888888888888874432000
Q ss_pred CCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 615 RNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 615 ~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.|.. .+..+..+.++++|+ .|.++++.. .. .+..+. ++|+.|+|+.|+
T Consensus 551 ~N~l--~~~~p~~l~~l~~L~-~L~Ls~N~l-~~----ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 551 GNRT--LREWPEGITLCPSLT-QLQIGSNDI-RK----VNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CCBC--CCCCCTTGGGCSSCC-EEECCSSCC-CB----CCSCCC--TTCCEEECCSCT
T ss_pred cCcc--cccChHHHhcCCCCC-EEECCCCcC-Cc----cCHhHh--CcCCEEECcCCC
Confidence 0001 233344555666666 677766543 22 223333 678888888774
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.45 E-value=2.9e-13 Score=140.65 Aligned_cols=123 Identities=22% Similarity=0.258 Sum_probs=96.4
Q ss_pred CCCceeEEEEEcCCcCCcc-ccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccccc
Q 039885 470 PKEKLRHSMLMLGFEASFP-DSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIE 548 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~ 548 (674)
.++.++.|.+++|.+..++ ..+.++++|++|++++|. +....|..|.++++|++|++ ++|.+..+|..+.
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L-------~~n~l~~l~~~~~ 122 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK--ISKIHEKAFSPLRKLQKLYI-------SKNHLVEIPPNLP 122 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCEECGGGSTTCTTCCEEEC-------CSSCCCSCCSSCC
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc--cCccCHhHhhCcCCCCEEEC-------CCCcCCccCcccc
Confidence 3568899999999887764 478899999999999998 77777888999999999999 8888888887776
Q ss_pred CCCCCcceeecCCCCcccccc-ccCCCcccEEEecccccccc---ccccccccCccCCeeee
Q 039885 549 KLIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLR---RLPHGFGRLVNLRHLSE 606 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~---~lP~~i~~L~~L~~L~l 606 (674)
.+|++|++++|.++.+|.. ++.+++|++|++++| .+. ..|..+..+ +|++|++
T Consensus 123 --~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 123 --SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN--PLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp --TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC--CCBGGGSCTTSSCSC-CCSCCBC
T ss_pred --ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC--ccccCCCCcccccCC-ccCEEEC
Confidence 7888888888888888764 788888888888887 332 334445554 4444444
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.45 E-value=2.1e-13 Score=156.17 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=116.9
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cc
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i 547 (674)
.+..+++|++++|.+..+|. .+.++++|++|++++|. +.+..|..|.++++|++|+| ++|.+..+|. .|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L-------~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNL-------QHNELSQLSDKTF 93 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--CCCCCTTHHHHCTTCCEEEC-------CSSCCCCCCTTTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--cCccCHHHHhcccCcCEEEC-------CCCccCccChhhh
Confidence 45789999999999987765 58999999999999998 88878889999999999999 9999999886 69
Q ss_pred cCCCCCcceeecCCCCcccc-ccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCc
Q 039885 548 EKLIHLRFLQLRDLMIDELP-ETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGI 611 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~ 611 (674)
+++++|++|+|++|.++.+| ..++++++|++|++++| ...+..|..++++++|++|++..|.+
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcc
Confidence 99999999999999999887 57999999999999999 44455567799999999999977664
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.44 E-value=5.7e-13 Score=138.29 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=48.9
Q ss_pred ccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCccc-ccc
Q 039885 491 LLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDEL-PET 569 (674)
Q Consensus 491 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~l-P~~ 569 (674)
+.++++|+.|++++|.-...+..+..|.++++|++|++ ++|.+..+|..+. .+|++|+|++|.++.+ |..
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l-------~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~ 211 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI-------ADTNITTIPQGLP--PSLTELHLDGNKITKVDAAS 211 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC-------CSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGG
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC-------CCCccccCCcccc--ccCCEEECCCCcCCccCHHH
Confidence 33444444444444431001123333444444444444 4444444444332 4455555555554433 334
Q ss_pred ccCCCcccEEEecccccccccccc-ccccCccCCeeeeeeeC
Q 039885 570 CCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 570 i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l~~~~ 610 (674)
++.+++|++|++++| .+..+|. .+..+++|++|++..|.
T Consensus 212 ~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 212 LKGLNNLAKLGLSFN--SISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp GTTCTTCCEEECCSS--CCCEECTTTGGGSTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCC--cCceeChhhccCCCCCCEEECCCCc
Confidence 555555555555555 2333332 45555555555554443
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=153.19 Aligned_cols=180 Identities=19% Similarity=0.177 Sum_probs=137.4
Q ss_pred CCCceeEEEEEcCCcCCcc-ccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccc
Q 039885 470 PKEKLRHSMLMLGFEASFP-DSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i 547 (674)
.+..+++|++++|.+..++ ..+.++++|++|++++|. +....+..|.++++|++|+| ++|.+..+| ..|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~ 96 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLIL-------TGNPIQSLALGAF 96 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--CCEECTTTTTTCTTCCEEEC-------TTCCCCEECTTTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc--CCccCcccccCchhCCEEeC-------cCCcCCccCHhhh
Confidence 4678999999999987664 478899999999999998 77777888999999999999 999999865 789
Q ss_pred cCCCCCcceeecCCCCccccc-cccCCCcccEEEecccccccc--ccccccccCccCCeeeeeeeCccCCCCCCCCCCCC
Q 039885 548 EKLIHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLR--RLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCK 624 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 624 (674)
+++.+|++|++++|.++.+|. .++++++|++|++++| .+. .+|..|+++++|++|++..|.++. . .+..
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n--~l~~~~lp~~~~~l~~L~~L~l~~n~l~~----~--~~~~ 168 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHLDLSSNKIQS----I--YCTD 168 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS--CCCCCCCCGGGGGCTTCCEEECTTSCCCE----E--CGGG
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCC--ccceecChhhhcccCCCCEEeCcCCccce----e--cHHH
Confidence 999999999999999999987 6999999999999999 455 479999999999999997766433 1 2233
Q ss_pred hhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeec
Q 039885 625 LEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFD 671 (674)
Q Consensus 625 ~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~ 671 (674)
+..+.+|+.+...|.+.+..... ..+..+... +|+.|+|++|
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~----~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNF----IQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCE----ECTTTTTTC-EEEEEEEESC
T ss_pred ccchhccchhhhhcccCCCCcee----cCHHHhccC-cceeEecccc
Confidence 44444443221156665543211 111223222 6777777765
No 57
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=1.5e-13 Score=127.63 Aligned_cols=129 Identities=19% Similarity=0.140 Sum_probs=111.1
Q ss_pred CCCceeEEEEEcCCcC--CccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-cccc
Q 039885 470 PKEKLRHSMLMLGFEA--SFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKE 546 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~ 546 (674)
.++.+++|.+++|.+. .+|..+..+++|+.|++++|. +... ..+..+++|++|+| ++|.+.. +|..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~--l~~~--~~~~~l~~L~~L~L-------s~N~l~~~~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--LISV--SNLPKLPKLKKLEL-------SENRIFGGLDML 90 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC--CCCC--SSCCCCSSCCEEEE-------ESCCCCSCCCHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC--CCCh--hhhccCCCCCEEEC-------cCCcCchHHHHH
Confidence 4577899999999887 788888889999999999988 6654 56888999999999 9999888 7777
Q ss_pred ccCCCCCcceeecCCCCcccc--ccccCCCcccEEEecccccccccccc----ccccCccCCeeeeeeeCc
Q 039885 547 IEKLIHLRFLQLRDLMIDELP--ETCCELFNLQTLEIRQRGYYLRRLPH----GFGRLVNLRHLSEFVVGI 611 (674)
Q Consensus 547 i~~L~~Lr~L~L~~~~i~~lP--~~i~~L~~L~~L~l~~~~~~~~~lP~----~i~~L~~L~~L~l~~~~~ 611 (674)
++++++|++|+|++|.++.+| ..++.+++|++|++++| .+..+|. .+..+++|++|++..|.+
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC--EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS--GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC--cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 778999999999999999887 68899999999999999 6777876 788999999999977763
No 58
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.43 E-value=1.2e-13 Score=155.79 Aligned_cols=132 Identities=10% Similarity=-0.020 Sum_probs=111.1
Q ss_pred CCCceeEEEEEcCCcCCc-cccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccccc
Q 039885 470 PKEKLRHSMLMLGFEASF-PDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i 547 (674)
.+..+++|++++|.+..+ |..+.++++|++|++++|. +....|..|.++++|++|+| ++|.+.. .|..|
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~~~ 101 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ--IYWIHEDTFQSQHRLDTLVL-------TANPLIFMAETAL 101 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC--CCEECTTTTTTCTTCCEEEC-------TTCCCSEECTTTT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc--cceeChhhccCccccCeeeC-------CCCcccccChhhh
Confidence 567899999999998776 5678999999999999998 77777888999999999999 9999888 57789
Q ss_pred cCCCCCcceeecCCCCccc-cccccCCCcccEEEeccccccccccc-cccccCccCCeeeeeeeCcc
Q 039885 548 EKLIHLRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRLP-HGFGRLVNLRHLSEFVVGIT 612 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~ 612 (674)
+++++|++|+|++|.++.+ |..++++++|++|++++| .+..++ ..+..+++|++|++..|.+.
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN--HISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS--CCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCC--cccccCcccccCCcccCEEEcccCccc
Confidence 9999999999999999887 567899999999999998 566552 33445899999999666543
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.43 E-value=3e-13 Score=151.21 Aligned_cols=122 Identities=17% Similarity=0.163 Sum_probs=95.5
Q ss_pred eeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccc-cccccCCCC
Q 039885 474 LRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREI-PKEIEKLIH 552 (674)
Q Consensus 474 ~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~l-p~~i~~L~~ 552 (674)
.++++++++.+..+|..+. ++|+.|++++|. +....|..|.++++|++|+| ++|.++.+ |..|+++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~L-------s~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS--ISELRMPDISFLSELRVLRL-------SHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC--CCCCCGGGTTTCTTCCEEEC-------CSCCCCEECTTTTTTCTT
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCC--ccccChhhhccCCCccEEEC-------CCCCCCcCCHHHhCCCCC
Confidence 3778888888877776554 788888888887 77766677888888888888 88888875 667888888
Q ss_pred CcceeecCCCCccccccccCCCcccEEEecccccccccc--ccccccCccCCeeeeeeeC
Q 039885 553 LRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRL--PHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 553 Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~l--P~~i~~L~~L~~L~l~~~~ 610 (674)
|++|+|++|.++.+|.. .+++|++|++++| .+..+ |..|+++++|++|++..|.
T Consensus 102 L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N--~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC--PMASLRHLDLSFN--DFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CCEEECTTSCCCEECSC--CCTTCSEEECCSS--CCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCEEECCCCcCCccCcc--ccccCCEEECCCC--CccccCchHhhcccCcccEEecCCCc
Confidence 88888888888888877 7888888888888 45554 4678888888888887665
No 60
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=3.5e-13 Score=131.14 Aligned_cols=130 Identities=25% Similarity=0.328 Sum_probs=97.4
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccc-c
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE-I 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~-i 547 (674)
.+..++.|.+.+|.+..+|. .+..+++|+.|++++|. +....|..|.++++|++|+| ++|.++.+|.. +
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~L-------s~N~l~~l~~~~f 100 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--ISELAPDAFQGLRSLNSLVL-------YGNKITELPKSLF 100 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--CCEECTTTTTTCSSCCEEEC-------CSSCCCCCCTTTT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--CCCcCHHHhhCCcCCCEEEC-------CCCcCCccCHhHc
Confidence 34577888888887776654 56777888888888887 66666777888888888888 88888887755 5
Q ss_pred cCCCCCcceeecCCCCcccc-ccccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeC
Q 039885 548 EKLIHLRFLQLRDLMIDELP-ETCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVG 610 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~ 610 (674)
.++.+|++|+|++|.++.+| ..+..+++|++|+|++| .+..+|.. +..+++|++|++..|.
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN--KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC--cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 67888888888888877664 46778888888888887 56666554 7778888888886555
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=8.3e-13 Score=148.59 Aligned_cols=173 Identities=17% Similarity=0.123 Sum_probs=99.7
Q ss_pred CCceeEEEEEcCCcCCcccc-ccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-----
Q 039885 471 KEKLRHSMLMLGFEASFPDS-LLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP----- 544 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp----- 544 (674)
.+.+++|.+++|.+..+|.. +.++++|++|++++|. +.+..|..|..+++|++|+| ++|.+..+|
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L-------~~N~l~~~~~~~l~ 192 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN--LERIEDDTFQATTSLQNLQL-------SSNRLTHVDLSLIP 192 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCBCCTTTTTTCTTCCEEEC-------TTSCCSBCCGGGCT
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc--CCCCChhhhhcCCcCcEEEC-------cCCCCCCcChhhhh
Confidence 34566666666666555544 3566666666666665 55555555666666666666 444333221
Q ss_pred -------------------------------------------------------ccccCCCCCcceeecCCCCccc-cc
Q 039885 545 -------------------------------------------------------KEIEKLIHLRFLQLRDLMIDEL-PE 568 (674)
Q Consensus 545 -------------------------------------------------------~~i~~L~~Lr~L~L~~~~i~~l-P~ 568 (674)
..++.+++|++|+|++|.++.+ |.
T Consensus 193 ~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 193 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp TCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred hhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHH
Confidence 2345556666666666665543 45
Q ss_pred cccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCC
Q 039885 569 TCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKD 648 (674)
Q Consensus 569 ~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~ 648 (674)
.++.+++|++|+|++| .+..+|..++.+++|++|++..|.+.. .+..+..+++|+ .|.++++....
T Consensus 273 ~~~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~Ls~N~l~~----------i~~~~~~l~~L~-~L~L~~N~l~~- 338 (597)
T 3oja_B 273 PFVKMQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLH----------VERNQPQFDRLE-NLYLDHNSIVT- 338 (597)
T ss_dssp GGTTCSSCCEEECTTS--CCCEEECSSSCCTTCCEEECCSSCCCC----------CGGGHHHHTTCS-EEECCSSCCCC-
T ss_pred HhcCccCCCEEECCCC--CCCCCCcccccCCCCcEEECCCCCCCc----------cCcccccCCCCC-EEECCCCCCCC-
Confidence 5666666666666666 455566666666666666665554222 223344455555 66666644322
Q ss_pred hhhhhhccCCccCCCCeEEEeecC
Q 039885 649 VDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 649 ~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
..+..+++|+.|+|++|+
T Consensus 339 ------~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 339 ------LKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp ------CCCCTTCCCSEEECCSSC
T ss_pred ------cChhhcCCCCEEEeeCCC
Confidence 125667788888887774
No 62
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=4.4e-13 Score=128.06 Aligned_cols=150 Identities=19% Similarity=0.142 Sum_probs=121.4
Q ss_pred cCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCcc-ccccc
Q 039885 492 LNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDE-LPETC 570 (674)
Q Consensus 492 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~-lP~~i 570 (674)
..+++|+.|.++++. +.. +| .+..+++|++|++ ++|.+..+| .++.+++|++|++++|.++. .|..+
T Consensus 41 ~~l~~L~~L~l~~n~--i~~-l~-~l~~l~~L~~L~l-------~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 41 AQMNSLTYITLANIN--VTD-LT-GIEYAHNIKDLTI-------NNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHHTCCEEEEESSC--CSC-CT-TGGGCTTCSEEEE-------ESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred hhcCCccEEeccCCC--ccC-hH-HHhcCCCCCEEEc-------cCCCCCcch-hhhcCCCCCEEEeECCccCcccChhh
Confidence 567899999999988 664 45 4899999999999 999777665 79999999999999999885 78899
Q ss_pred cCCCcccEEEeccccccccccccccccCccCCeeeeeeeC-ccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCCh
Q 039885 571 CELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVG-ITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDV 649 (674)
Q Consensus 571 ~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~ 649 (674)
+.+++|++|++++| ......|..++.+++|++|++..|. +.. +..+..+++|+ .|.++++.- .+.
T Consensus 109 ~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-----------~~~l~~l~~L~-~L~l~~n~i-~~~ 174 (197)
T 4ezg_A 109 SGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITD-----------IMPLKTLPELK-SLNIQFDGV-HDY 174 (197)
T ss_dssp TTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCC-----------CGGGGGCSSCC-EEECTTBCC-CCC
T ss_pred cCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccc-----------cHhhcCCCCCC-EEECCCCCC-cCh
Confidence 99999999999999 4445678889999999999997665 222 23567777787 888877543 221
Q ss_pred hhhhhccCCccCCCCeEEEeecC
Q 039885 650 DEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 650 ~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
..+..+++|+.|+++.|+
T Consensus 175 -----~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 175 -----RGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -----TTGGGCSSCCEEEECBC-
T ss_pred -----HHhccCCCCCEEEeeCcc
Confidence 257788999999999885
No 63
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.43 E-value=5.9e-13 Score=145.64 Aligned_cols=130 Identities=21% Similarity=0.224 Sum_probs=93.9
Q ss_pred CCceeEEEEEcCCcCCc-cccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-cccccc
Q 039885 471 KEKLRHSMLMLGFEASF-PDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIE 548 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~ 548 (674)
...++.|.+++|.+..+ |..+.++++|++|++++|. +....+..|.++++|++|+| ++|.+.. .|..+.
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L-------s~n~i~~~~~~~~~ 125 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR--LKLIPLGVFTGLSNLTKLDI-------SENKIVILLDYMFQ 125 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCSCCTTSSTTCTTCCEEEC-------TTSCCCEECTTTTT
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc--CCccCcccccCCCCCCEEEC-------CCCccccCChhHcc
Confidence 45678888887777654 5667778888888888776 66655566777888888888 7777776 456777
Q ss_pred CCCCCcceeecCCCCcccc-ccccCCCcccEEEecccccccccccc-ccccCccCCeeeeeeeCc
Q 039885 549 KLIHLRFLQLRDLMIDELP-ETCCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSEFVVGI 611 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l~~~~~ 611 (674)
++++|++|+|++|.+..++ ..++.+++|++|++++| .+..+|. .+.++++|++|++..+.+
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--NLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC--CCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCC--cCcccChhHhcccCCCcEEeCCCCcC
Confidence 7888888888887776553 46777778888888877 4666654 377777777777766553
No 64
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.42 E-value=7.9e-13 Score=138.17 Aligned_cols=168 Identities=19% Similarity=0.160 Sum_probs=98.8
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
.+.+++|++++|.+..+|. +..+++|++|++++|. +.. ++ .+..+++|++|++ ++|.+..+|. +..+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~--i~~-~~-~~~~l~~L~~L~l-------~~n~i~~~~~-~~~l 131 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK--ITD-IS-ALQNLTNLRELYL-------NEDNISDISP-LANL 131 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--CCC-CG-GGTTCTTCSEEEC-------TTSCCCCCGG-GTTC
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCc--ccC-ch-HHcCCCcCCEEEC-------cCCcccCchh-hccC
Confidence 3456666666666655554 6666666666666665 443 23 3666666666666 6666666555 6666
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
++|++|++++|.....++.++.+++|++|++++| .+..+|. +..+++|++|++..+.+.. +..+..
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~-~~~l~~L~~L~l~~n~l~~-----------~~~~~~ 197 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES--KVKDVTP-IANLTDLYSLSLNYNQIED-----------ISPLAS 197 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS--CCCCCGG-GGGCTTCSEEECTTSCCCC-----------CGGGGG
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCC--CcCCchh-hccCCCCCEEEccCCcccc-----------cccccC
Confidence 6666666666653333334666666666666666 3555544 6666667777665444222 112455
Q ss_pred cccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 631 LRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 631 L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+++|+ .|.+.+...... ..+..+++|+.|+|++|+
T Consensus 198 l~~L~-~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 198 LTSLH-YFTAYVNQITDI------TPVANMTRLNSLKIGNNK 232 (347)
T ss_dssp CTTCC-EEECCSSCCCCC------GGGGGCTTCCEEECCSSC
T ss_pred CCccc-eeecccCCCCCC------chhhcCCcCCEEEccCCc
Confidence 55555 566655432211 116677888999988874
No 65
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.42 E-value=1.1e-12 Score=139.43 Aligned_cols=106 Identities=16% Similarity=0.064 Sum_probs=59.1
Q ss_pred ccCCCCCcceeecCCCCccc-cccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCCh
Q 039885 547 IEKLIHLRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKL 625 (674)
Q Consensus 547 i~~L~~Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 625 (674)
++.+++|++|+|++|.++.+ |..++.+++|++|++++| .+..+|..+..+++|++|++..|.+.. .+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~l~~L~~L~L~~n~l~~----------~~ 311 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLH----------VE 311 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS--CCCEEECSSSCCTTCCEEECCSSCCCC----------CG
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC--cCcccCcccCCCCCCCEEECCCCccee----------cC
Confidence 44455566666666655543 445566666666666665 455566555666666666665444222 22
Q ss_pred hhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 626 EVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 626 ~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
..+..+++|+ .|.+.++.-.. ..+..+++|+.|+|+.|+
T Consensus 312 ~~~~~l~~L~-~L~L~~N~i~~-------~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 312 RNQPQFDRLE-NLYLDHNSIVT-------LKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp GGHHHHTTCS-EEECCSSCCCC-------CCCCTTCCCSEEECCSSC
T ss_pred ccccccCcCC-EEECCCCccce-------eCchhhccCCEEEcCCCC
Confidence 2344455555 56666543221 125667778888887764
No 66
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.42 E-value=2.6e-13 Score=153.73 Aligned_cols=133 Identities=19% Similarity=0.216 Sum_probs=118.2
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cc
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i 547 (674)
.+..+++|++++|.+..+|+ .+.++++|++|++++|. +..+.|..|.++++|++|+| ++|.++.+|. .|
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i~~i~~~~f~~L~~L~~L~L-------s~N~l~~l~~~~f 120 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLIL-------TGNPIQSLALGAF 120 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEEC-------TTCCCCEECGGGG
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--CCCcChhHhcCCCCCCEEEc-------cCCcCCCCCHHHh
Confidence 56789999999999988874 68999999999999998 88877888999999999999 9999999875 68
Q ss_pred cCCCCCcceeecCCCCccccc-cccCCCcccEEEecccccccc--ccccccccCccCCeeeeeeeCccC
Q 039885 548 EKLIHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLR--RLPHGFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~ 613 (674)
++|.+|++|+|++|.++.+|+ .+++|++|++|++++| .+. .+|..++.+++|++|++..|.++.
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS--CCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC--ccccCCCchhhccchhhhhhcccCccccc
Confidence 999999999999999999987 4899999999999999 454 468889999999999997776544
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.42 E-value=7.1e-13 Score=155.28 Aligned_cols=180 Identities=19% Similarity=0.190 Sum_probs=134.8
Q ss_pred CCCceeEEEEEcCCcCCc-cccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccccc
Q 039885 470 PKEKLRHSMLMLGFEASF-PDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEI 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i 547 (674)
.++.+++|++++|.+..+ |..+.++++|++|++++|.. ...+.|..|.++++|++|+| ++|.+.. .|..|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~L-------s~N~l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDL-------GSSKIYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEEC-------TTCCCCEECTTSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEEC-------CCCcCcccCHhHc
Confidence 678999999999998765 67889999999999999851 33334778999999999999 9999998 58899
Q ss_pred cCCCCCcceeecCCCCcc-cccc--ccCCCcccEEEecccccccccc--ccccccCccCCeeeeeeeCccCCCCCCCCCC
Q 039885 548 EKLIHLRFLQLRDLMIDE-LPET--CCELFNLQTLEIRQRGYYLRRL--PHGFGRLVNLRHLSEFVVGITGSRNDSRSRG 622 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~-lP~~--i~~L~~L~~L~l~~~~~~~~~l--P~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 622 (674)
+++.+|++|+|++|.+.. +|.. +++|++|++|+|++| .+..+ |..|++|++|++|++..|.+.. . .+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N--~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~----~--~~ 165 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN--QIRSLYLHPSFGKLNSLKSIDFSSNQIFL----V--CE 165 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC--CCCCCCCCGGGGTCSSCCEEEEESSCCCC----C--CS
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC--cccccccchhHhhCCCCCEEECCCCcCCe----e--CH
Confidence 999999999999999874 6665 899999999999999 45554 3579999999999998776444 2 23
Q ss_pred CChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccC------CCCeEEEeec
Q 039885 623 CKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKM------NLLHLGLGFD 671 (674)
Q Consensus 623 ~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~------~L~~L~L~~~ 671 (674)
..+..+.. .+|+ .|.+.+...... .+..+..+. +|+.|+|+.|
T Consensus 166 ~~l~~l~~-~~L~-~L~L~~n~l~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 166 HELEPLQG-KTLS-FFSLAANSLYSR----VSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp GGGHHHHH-CSSC-CCEECCSBSCCC----CCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred HHcccccC-Cccc-eEECCCCccccc----cccchhhcCCccccCceeEEecCCC
Confidence 33444311 4555 566655432221 112233332 4888888776
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.42 E-value=4e-13 Score=132.54 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=137.1
Q ss_pred CCCceeEEEEEcCC-cCCccc-cccCCCCceEEEecC-CCcccccchhHhhccCCceeEEEecccccccccccccccccc
Q 039885 470 PKEKLRHSMLMLGF-EASFPD-SLLNAKKLRSFLISS-PYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE 546 (674)
Q Consensus 470 ~~~~~r~l~l~~~~-~~~~p~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~ 546 (674)
..+.++++.+++|. +..+|. .+.++++|++|++++ |. +....+..|.++++|++|++ ++|.++.+|.
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~--l~~i~~~~f~~l~~L~~L~l-------~~n~l~~lp~- 122 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN--LTYIDPDALKELPLLKFLGI-------FNTGLKMFPD- 122 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT--CCEECTTSEECCTTCCEEEE-------EEECCCSCCC-
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC--eeEcCHHHhCCCCCCCEEeC-------CCCCCccccc-
Confidence 35789999999997 877765 688999999999998 77 77766778999999999999 9999999997
Q ss_pred ccCCCCCc---ceeecCC-CCcccccc-ccCCCccc-EEEeccccccccccccccccCccCCeeeeeeeC-ccCCCCCCC
Q 039885 547 IEKLIHLR---FLQLRDL-MIDELPET-CCELFNLQ-TLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVG-ITGSRNDSR 619 (674)
Q Consensus 547 i~~L~~Lr---~L~L~~~-~i~~lP~~-i~~L~~L~-~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~-~~~~~~~~~ 619 (674)
++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++| .+..+|......++|++|++..|. ++.
T Consensus 123 ~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n--~l~~i~~~~~~~~~L~~L~L~~n~~l~~------ 194 (239)
T 2xwt_C 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN--GFTSVQGYAFNGTKLDAVYLNKNKYLTV------ 194 (239)
T ss_dssp CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC--CCCEECTTTTTTCEEEEEECTTCTTCCE------
T ss_pred cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC--CCcccCHhhcCCCCCCEEEcCCCCCccc------
Confidence 88888888 9999999 89999875 89999999 9999999 678999876666899999996663 333
Q ss_pred CCCCChhhccCc-ccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecCCC
Q 039885 620 SRGCKLEVLGQL-RHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDKEL 674 (674)
Q Consensus 620 ~~~~~~~~L~~L-~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~~~ 674 (674)
. ....+..+ .+|+ .|.+++..- ... +.. .+.+|+.|+++.+..|
T Consensus 195 -i--~~~~~~~l~~~L~-~L~l~~N~l-~~l----~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 195 -I--DKDAFGGVYSGPS-LLDVSQTSV-TAL----PSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp -E--CTTTTTTCSBCCS-EEECTTCCC-CCC----CCT--TCTTCSEEECTTC---
T ss_pred -C--CHHHhhccccCCc-EEECCCCcc-ccC----Chh--HhccCceeeccCccCC
Confidence 1 12234555 6677 777776432 221 111 4678999999887654
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=2.4e-13 Score=139.95 Aligned_cols=173 Identities=16% Similarity=0.065 Sum_probs=105.5
Q ss_pred CCCceeEEEEEcCCcCCccccccCC-----CCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc--
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNA-----KKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-- 542 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-- 542 (674)
..+.+++|++++|.+...|..+..+ ++|++|++++|. +.+..|..|..+++|++|+| ++|.+.+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L-------s~N~l~~~~ 189 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH--SLNFSCEQVRVFPALSTLDL-------SDNPELGER 189 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS--CCCCCTTTCCCCSSCCEEEC-------CSCTTCHHH
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC--CccchHHHhccCCCCCEEEC-------CCCCcCcch
Confidence 3456777777777766556555554 677777777776 66655566777777777777 7776543
Q ss_pred -ccccc--cCCCCCcceeecCCCCcccc---cc-ccCCCcccEEEeccccccccccc--cccccCccCCeeeeeeeCccC
Q 039885 543 -IPKEI--EKLIHLRFLQLRDLMIDELP---ET-CCELFNLQTLEIRQRGYYLRRLP--HGFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 543 -lp~~i--~~L~~Lr~L~L~~~~i~~lP---~~-i~~L~~L~~L~l~~~~~~~~~lP--~~i~~L~~L~~L~l~~~~~~~ 613 (674)
+|..+ +++++|++|+|++|.++.+| .. +..+++|++|++++| .+...+ ..+..+++|++|++..|.++.
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN--SLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS--CCCSSCCCSCCCCCTTCCEEECTTSCCSS
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC--cCCcccchhhhhhcCCCCEEECCCCccCh
Confidence 34444 67777777777777776433 22 246677777777777 344433 345567777777776555333
Q ss_pred CCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 614 SRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 614 ~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.+..+ . ++|+ .|+++++.-.. . +. +..+++|+.|+|+.|+
T Consensus 268 -------ip~~~---~--~~L~-~L~Ls~N~l~~-~----p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 268 -------VPKGL---P--AKLS-VLDLSYNRLDR-N----PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp -------CCSSC---C--SEEE-EEECCSSCCCS-C----CC-TTTSCEEEEEECTTCT
T ss_pred -------hhhhc---c--CCce-EEECCCCCCCC-C----hh-HhhCCCCCEEeccCCC
Confidence 22222 1 3444 55555543211 1 22 6677888888888774
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=2.2e-13 Score=140.31 Aligned_cols=174 Identities=17% Similarity=0.134 Sum_probs=133.6
Q ss_pred CCceeEEEEEcCCcC-Cccccc--cCCCCceEEEecCCCcccccchhHhhccC-----CceeEEEecccccccccccccc
Q 039885 471 KEKLRHSMLMLGFEA-SFPDSL--LNAKKLRSFLISSPYDVFSSVLPRLFDQL-----TCLRTLKIVAHDRRWSRGMIRE 542 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~-~~p~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~~~~~~~l~~ 542 (674)
...+++|.+++|.+. .+|..+ ..+++|+.|++++|. +.+. |..+..+ ++|++|+| ++|.+..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~-~~~~~~l~~~~~~~L~~L~L-------~~N~l~~ 163 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS--WATR-DAWLAELQQWLKPGLKVLSI-------AQAHSLN 163 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB--CSSS-SSHHHHHHTTCCTTCCEEEE-------ESCSCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC--Ccch-hHHHHHHHHhhcCCCcEEEe-------eCCCCcc
Confidence 457999999999886 577765 889999999999998 7765 6667776 89999999 9999998
Q ss_pred cc-ccccCCCCCcceeecCCCCcc---ccccc--cCCCcccEEEecccccccccc---ccc-cccCccCCeeeeeeeCcc
Q 039885 543 IP-KEIEKLIHLRFLQLRDLMIDE---LPETC--CELFNLQTLEIRQRGYYLRRL---PHG-FGRLVNLRHLSEFVVGIT 612 (674)
Q Consensus 543 lp-~~i~~L~~Lr~L~L~~~~i~~---lP~~i--~~L~~L~~L~l~~~~~~~~~l---P~~-i~~L~~L~~L~l~~~~~~ 612 (674)
+| ..++++++|++|+|++|.+.. +|..+ +.+++|++|++++| .+..+ |.. +.++++|++|++..|.+.
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA--GMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS--CCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC--cCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 65 889999999999999999653 46666 89999999999999 56644 433 468899999999777644
Q ss_pred CCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 613 GSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 613 ~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
. .+ ....+..+++|+ .|.++++.-. . .+..+. ++|+.|+|++|+
T Consensus 242 ~-------~~-~~~~~~~l~~L~-~L~Ls~N~l~-~----ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 242 D-------AA-GAPSCDWPSQLN-SLNLSFTGLK-Q----VPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp S-------SC-CCSCCCCCTTCC-EEECTTSCCS-S----CCSSCC--SEEEEEECCSSC
T ss_pred c-------cc-chhhhhhcCCCC-EEECCCCccC-h----hhhhcc--CCceEEECCCCC
Confidence 4 11 123344566777 7877765432 2 233444 789999999885
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.41 E-value=3.6e-13 Score=150.10 Aligned_cols=146 Identities=20% Similarity=0.147 Sum_probs=116.3
Q ss_pred EEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccCCCCCcc
Q 039885 477 SMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEKLIHLRF 555 (674)
Q Consensus 477 l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L~~Lr~ 555 (674)
.+.+.+.+..+|..+. ++|++|++++|. +....|..|.++++|++|+| ++|.+..+| ..|+++++|++
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L-------s~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNK--ITYIGHGDLRACANLQVLIL-------KSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSC--CCEECSSTTSSCTTCCEEEC-------TTSCCCEECTTTTTTCTTCCE
T ss_pred EECCCCccccccccCC--CCccEEECcCCc--cCccChhhhhcCCcccEEEC-------CCCCcCccChhhccccccCCE
Confidence 4455667778887654 799999999998 77777888999999999999 999999855 78999999999
Q ss_pred eeecCCCCcccccc-ccCCCcccEEEecccccccc--ccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcc
Q 039885 556 LQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLR--RLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLR 632 (674)
Q Consensus 556 L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 632 (674)
|+|++|.++.+|+. ++++++|++|++++| .+. .+|..++++++|++|++..|.... ......+.+++
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~L~~n~~~~--------~~~~~~~~~l~ 148 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGN--PYQTLGVTSLFPNLTNLQTLRIGNVETFS--------EIRRIDFAGLT 148 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTC--CCSSSCSSCSCTTCTTCCEEEEEESSSCC--------EECTTTTTTCC
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCC--cccccchhhhhhccCCccEEECCCCcccc--------ccCHhhhhccc
Confidence 99999999988876 999999999999999 465 457889999999999998776111 11112345555
Q ss_pred cCCCeeEEeccC
Q 039885 633 HLRGSLRIRGLG 644 (674)
Q Consensus 633 ~L~g~L~i~~l~ 644 (674)
+|+ .|.+.++.
T Consensus 149 ~L~-~L~L~~n~ 159 (549)
T 2z81_A 149 SLN-ELEIKALS 159 (549)
T ss_dssp EEE-EEEEEETT
T ss_pred ccC-eeeccCCc
Confidence 565 66666543
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=4.9e-11 Score=126.59 Aligned_cols=207 Identities=14% Similarity=0.085 Sum_probs=139.0
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccccc-ceEEEEEeCCCCCHHHHHHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHF-GKRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~ 214 (674)
+..++||+.+++++..++.....+..+..+.+.|+|++|+||||||+.+++.. .... ...+|++++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 36799999999999998864211001233489999999999999999998742 2221 24567888888888899999
Q ss_pred HHHHhhCCCCC-cccHHHHHHHHHHHcC--CCeEEEEEeCCCCCChhhHHHHHHhhcCCC----CCcEEEEEcCChhHHh
Q 039885 215 IIEALEGSATN-LVELNALLLRINESIA--REKFLLVLDDVWTEDYNKWESFRRCLINGQ----RGSKILVTTRKETVAG 287 (674)
Q Consensus 215 il~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~IivTtR~~~va~ 287 (674)
++..++..... ......+...+...+. +++.+|||||++..+......+...+.... .+..||+||+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99988654322 2344555555555553 678999999998776666666666554321 4667888877654333
Q ss_pred hcC-------CCCeEeCCCCChHhhHHHHHHHhhcCC-CCCChhhHHHHHHHHHHHc---------CCChHHHHHHH
Q 039885 288 MME-------STDVISIKELSERECWSLFERIAFFNR-PSLECEQLEEFGRKIVSKC---------KGLPLAVKTIG 347 (674)
Q Consensus 288 ~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~-~~~~~~~l~~~~~~I~~~c---------~GlPLai~~~~ 347 (674)
.+. ....+.+.+++.++..+++...+.... .... -.+....|++.+ +|.|..+..+.
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 221 123799999999999999988754211 1111 134566688888 79886555443
No 73
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=4.7e-13 Score=130.23 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=122.9
Q ss_pred eEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccc-cccccCCCCC
Q 039885 475 RHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREI-PKEIEKLIHL 553 (674)
Q Consensus 475 r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~l-p~~i~~L~~L 553 (674)
+.+...++.+..+|..+. ++|+.|++++|. +....+..|..+++|++|+| ++|.+..+ |..|.++.+|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~L-------s~N~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDL-------SNNQISELAPDAFQGLRSL 82 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC--CCEECTTSSTTCTTCCEEEC-------CSSCCCEECTTTTTTCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEEC-------CCCcCCCcCHHHhhCCcCC
Confidence 456677777888887654 789999999998 77777778999999999999 99999985 7899999999
Q ss_pred cceeecCCCCcccccc-ccCCCcccEEEecccccccccc-ccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCc
Q 039885 554 RFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRL-PHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQL 631 (674)
Q Consensus 554 r~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 631 (674)
++|+|++|.|+.+|.. +..+++|++|+|++| .+..+ |..|..+++|++|++..|.++. .+ ...+..+
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~--~~~~~~l 151 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNAN--KINCLRVDAFQDLHNLNLLSLYDNKLQT-------IA--KGTFSPL 151 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSC-------CC--TTTTTTC
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCC--CCCEeCHHHcCCCCCCCEEECCCCcCCE-------EC--HHHHhCC
Confidence 9999999999999987 588999999999999 56666 5679999999999998877544 22 2235556
Q ss_pred ccCCCeeEEeccCCCC
Q 039885 632 RHLRGSLRIRGLGNVK 647 (674)
Q Consensus 632 ~~L~g~L~i~~l~~~~ 647 (674)
.+|+ .|.+.++....
T Consensus 152 ~~L~-~L~L~~N~~~c 166 (220)
T 2v9t_B 152 RAIQ-TMHLAQNPFIC 166 (220)
T ss_dssp TTCC-EEECCSSCEEC
T ss_pred CCCC-EEEeCCCCcCC
Confidence 6677 78787765543
No 74
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.40 E-value=3.8e-13 Score=151.83 Aligned_cols=177 Identities=17% Similarity=0.081 Sum_probs=116.8
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchh-HhhccCCceeEEEecccccccccccccc-cccccc
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLP-RLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIE 548 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~ 548 (674)
.+.++.+.+..|.+..+|..+..+++|+.|++++|. +.+..| ..+..+++|++|++ ++|.+.. .|..++
T Consensus 375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l-------~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST--LKRVTEFSAFLSLEKLLYLDI-------SYTNTKIDFDGIFL 445 (606)
T ss_dssp CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE--EESTTTTTTTTTCTTCCEEEC-------TTSCCEECCTTTTT
T ss_pred CCcccEeECCCCccccchhhccCCCCCCeeECCCCc--cCCccChhhhhccccCCEEEC-------cCCCCCccchhhhc
Confidence 345666777766666666666677777777777776 555444 45777777777777 7777766 566777
Q ss_pred CCCCCcceeecCCCCcc--ccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChh
Q 039885 549 KLIHLRFLQLRDLMIDE--LPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLE 626 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~--lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 626 (674)
++++|++|++++|.+.. +|..++.+++|++|++++| ...+..|..+.++++|++|++..|.++. ..+.
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------~~~~ 515 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLF---------LDSS 515 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSC---------EEGG
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCC---------cCHH
Confidence 77778888887777664 6777777788888888877 3333345567777888888776655322 2244
Q ss_pred hccCcccCCCeeEEeccCCCCChhhhhhccCCccC-CCCeEEEeecC
Q 039885 627 VLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKM-NLLHLGLGFDK 672 (674)
Q Consensus 627 ~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~-~L~~L~L~~~~ 672 (674)
.+.++++|+ .|.++++.-. . .+..+..++ +|+.|+|+.|+
T Consensus 516 ~~~~l~~L~-~L~l~~N~l~-~----~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 516 HYNQLYSLS-TLDCSFNRIE-T----SKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp GTTTCTTCC-EEECTTSCCC-C----EESCGGGSCTTCCEEECCSCC
T ss_pred HccCCCcCC-EEECCCCcCc-c----cCHhHhhhcccCcEEEccCCC
Confidence 556666666 6777665422 2 333355665 58888887764
No 75
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=6.3e-13 Score=133.15 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=103.7
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
...+++|.+.+|.+..+| .+..+++|+.|++++|. +....+ +..+++|+.|+| ++|.++.+|....
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~--i~~~~~--l~~l~~L~~L~L-------~~N~l~~l~~~~~-- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ--ISDLSP--LKDLTKLEELSV-------NRNRLKNLNGIPS-- 105 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC--CCCCGG--GTTCSSCCEEEC-------CSSCCSCCTTCCC--
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc--cCCChh--hccCCCCCEEEC-------CCCccCCcCcccc--
Confidence 356778888888777776 67778888888888877 665433 778888888888 8888877775433
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
.+|++|+|++|.++.+| .++.+++|++|++++| .+..+| .++.+++|++|++..|.++. . ..+..
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N--~i~~~~-~l~~l~~L~~L~L~~N~i~~-------~----~~l~~ 170 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN--KLKSIV-MLGFLSKLEVLDLHGNEITN-------T----GGLTR 170 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS--CCCBCG-GGGGCTTCCEEECTTSCCCB-------C----TTSTT
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCCC--cCCCCh-HHccCCCCCEEECCCCcCcc-------h----HHhcc
Confidence 78888888888888776 4788888888888888 567776 57888888888886665333 2 34555
Q ss_pred cccCCCeeEEecc
Q 039885 631 LRHLRGSLRIRGL 643 (674)
Q Consensus 631 L~~L~g~L~i~~l 643 (674)
+++|+ .|.+++.
T Consensus 171 l~~L~-~L~l~~N 182 (263)
T 1xeu_A 171 LKKVN-WIDLTGQ 182 (263)
T ss_dssp CCCCC-EEEEEEE
T ss_pred CCCCC-EEeCCCC
Confidence 55666 6666554
No 76
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=5.3e-13 Score=129.88 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=105.4
Q ss_pred CCCceeEEEEEcCCcCCcc--ccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-c
Q 039885 470 PKEKLRHSMLMLGFEASFP--DSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-E 546 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~ 546 (674)
.+..++.|.+++|.+..++ ..+..+++|+.|++++|. +....+..|..+++|++|+| ++|.++.+|. .
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~L-------s~N~l~~~~~~~ 100 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--ITDIEEGAFEGASGVNEILL-------TSNRLENVQHKM 100 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEEC-------CSSCCCCCCGGG
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc--CCEECHHHhCCCCCCCEEEC-------CCCccCccCHhH
Confidence 3556788888888887663 237788899999998888 77766777888899999999 8888888654 5
Q ss_pred ccCCCCCcceeecCCCCccc-cccccCCCcccEEEecccccccccc-ccccccCccCCeeeeeeeCcc
Q 039885 547 IEKLIHLRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRL-PHGFGRLVNLRHLSEFVVGIT 612 (674)
Q Consensus 547 i~~L~~Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~ 612 (674)
++++++|++|+|++|.++.+ |..+..+++|++|+|++| .+..+ |..|..+++|++|++..|.+.
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN--QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS--CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC--cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88889999999999988877 567888899999999988 46666 677888899999988666543
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=9.1e-13 Score=127.02 Aligned_cols=130 Identities=23% Similarity=0.336 Sum_probs=111.4
Q ss_pred CCCceeEEEEEcCCcCCcccc-ccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccc-c
Q 039885 470 PKEKLRHSMLMLGFEASFPDS-LLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE-I 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~-i 547 (674)
.++.+++|.+.+|.+..+|.. +..+++|++|++++|. +....+..|..+++|++|+| ++|.++.+|.. +
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~~~ 96 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK--LQSLPNGVFNKLTSLTYLNL-------STNQLQSLPNGVF 96 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEEC-------CSSCCCCCCTTTT
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc--cCccChhhcCCCCCcCEEEC-------CCCcCCccCHhHh
Confidence 456899999999998877654 6789999999999988 77766777899999999999 99999987754 6
Q ss_pred cCCCCCcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeC
Q 039885 548 EKLIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVG 610 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~ 610 (674)
+++++|++|+|++|.++.+|.. +.++++|++|++++| .+..+|.. +..+++|++|++..|.
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN--QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC--ccceeCHHHhccCCCccEEEecCCC
Confidence 8999999999999999988876 689999999999999 57777765 7899999999997665
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.39 E-value=9e-13 Score=145.84 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=112.7
Q ss_pred CCCceeEEEEEcCCcCCcc-ccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccccc
Q 039885 470 PKEKLRHSMLMLGFEASFP-DSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIE 548 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~ 548 (674)
.++.+++|++++|.+..++ ..+.++++|++|++++|. +.+..|..|.++++|++|+| ++|.++.+|..
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L-------s~N~l~~lp~~-- 87 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR--IQYLDISVFKFNQELEYLDL-------SHNKLVKISCH-- 87 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC--CCEEEGGGGTTCTTCCEEEC-------CSSCCCEEECC--
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCc--cCCcChHHhhcccCCCEEec-------CCCceeecCcc--
Confidence 3478999999999998765 578999999999999998 88877889999999999999 99999999987
Q ss_pred CCCCCcceeecCCCCcc--ccccccCCCcccEEEeccccccccccccccccCccC--CeeeeeeeCc
Q 039885 549 KLIHLRFLQLRDLMIDE--LPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNL--RHLSEFVVGI 611 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~--lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L--~~L~l~~~~~ 611 (674)
.+.+|++|+|++|.++. +|..++++++|++|++++| .+.. ..+..+++| ++|++..|.+
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n--~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT--HLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES--SCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCc--ccch--hhccccccceeeEEEeecccc
Confidence 89999999999999885 6789999999999999999 4544 457888888 9999988775
No 79
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=2.1e-13 Score=123.88 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=102.3
Q ss_pred CCCceeEEEEEcCCcC--CccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-cccc
Q 039885 470 PKEKLRHSMLMLGFEA--SFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKE 546 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~ 546 (674)
.++.++++.+++|.+. .+|..+..+++|+.|++++|. +... ..+..+++|++|++ ++|.+.. +|..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~--~~~~~l~~L~~L~L-------s~n~i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--LTSI--ANLPKLNKLKKLEL-------SDNRVSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC--CCCC--TTCCCCTTCCEEEC-------CSSCCCSCTHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC--CCCc--hhhhcCCCCCEEEC-------CCCcccchHHHH
Confidence 3467888999888876 778777888999999998887 6654 55888889999999 8888888 7877
Q ss_pred ccCCCCCcceeecCCCCcccc--ccccCCCcccEEEecccccccccccc----ccccCccCCeeee
Q 039885 547 IEKLIHLRFLQLRDLMIDELP--ETCCELFNLQTLEIRQRGYYLRRLPH----GFGRLVNLRHLSE 606 (674)
Q Consensus 547 i~~L~~Lr~L~L~~~~i~~lP--~~i~~L~~L~~L~l~~~~~~~~~lP~----~i~~L~~L~~L~l 606 (674)
++.+++|++|++++|.++.+| ..++.+++|++|++++| .+..+|. .++.+++|++|++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC--EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC--GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC--cccchHHHHHHHHHHCCCcccccC
Confidence 778899999999999988765 77888999999999988 5677765 5888888888876
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=4.2e-13 Score=137.98 Aligned_cols=173 Identities=14% Similarity=0.033 Sum_probs=127.7
Q ss_pred CCCceeEEEEEcCCcCCc-c----ccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc--
Q 039885 470 PKEKLRHSMLMLGFEASF-P----DSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-- 542 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~-p----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-- 542 (674)
....++.|.+++|.+... + ..+..+++|++|++++|. +....+..|..+++|++|+| ++|.+.+
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L-------s~N~l~~~~ 185 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH--SPAFSCEQVRAFPALTSLDL-------SDNPGLGER 185 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS--SCCCCTTSCCCCTTCCEEEC-------CSCTTCHHH
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC--cchhhHHHhccCCCCCEEEC-------CCCCCccch
Confidence 466788999999887642 2 234568899999999988 77777788889999999999 8888654
Q ss_pred -ccc--cccCCCCCcceeecCCCCcccccc----ccCCCcccEEEecccccccccc-ccccccC---ccCCeeeeeeeCc
Q 039885 543 -IPK--EIEKLIHLRFLQLRDLMIDELPET----CCELFNLQTLEIRQRGYYLRRL-PHGFGRL---VNLRHLSEFVVGI 611 (674)
Q Consensus 543 -lp~--~i~~L~~Lr~L~L~~~~i~~lP~~----i~~L~~L~~L~l~~~~~~~~~l-P~~i~~L---~~L~~L~l~~~~~ 611 (674)
+|. .++.+++|++|+|++|.++.+|.. ++.+++|++|+|++| .+..+ |..+..+ ++|++|++..|.+
T Consensus 186 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N--~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 186 GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN--SLRATVNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS--CCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC--CCCccchhhHHhccCcCcCCEEECCCCCC
Confidence 443 347899999999999999877763 578899999999999 45554 8887777 6999999977775
Q ss_pred cCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 612 TGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 612 ~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+. .+..+. ++|+ .|.++++.-.. . ..+..+++|+.|+|+.|+
T Consensus 264 ~~-------lp~~~~-----~~L~-~L~Ls~N~l~~-~-----~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 264 EQ-------VPKGLP-----AKLR-VLDLSSNRLNR-A-----PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CS-------CCSCCC-----SCCS-CEECCSCCCCS-C-----CCTTSCCCCSCEECSSTT
T ss_pred Cc-------hhhhhc-----CCCC-EEECCCCcCCC-C-----chhhhCCCccEEECcCCC
Confidence 44 333321 4566 67776653321 1 125677899999999885
No 81
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=4.1e-13 Score=129.44 Aligned_cols=148 Identities=21% Similarity=0.328 Sum_probs=117.9
Q ss_pred eEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccc-ccCCCCC
Q 039885 475 RHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE-IEKLIHL 553 (674)
Q Consensus 475 r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~-i~~L~~L 553 (674)
+.+....+....+|..+ .++|+.|++++|. +....+..|..+++|++|++ ++|.++.+|.. +..+.+|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l-------~~n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNS--LKSLPNGVFDELTSLTQLYL-------GGNKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEEC-------CSSCCCCCCTTTTTTCTTC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCc--cCcCChhhhcccccCcEEEC-------CCCccCccChhhcCCCCCc
Confidence 34556666666777544 4689999999998 77777777899999999999 99999997754 6899999
Q ss_pred cceeecCCCCcccccc-ccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCc
Q 039885 554 RFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQL 631 (674)
Q Consensus 554 r~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 631 (674)
++|+|++|.++.+|.. ++++++|++|++++| .+..+|.. +.++++|++|++..|.++. .+. ..+..+
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~N~l~~-------~~~--~~~~~l 147 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTN--QLQSLPDGVFDKLTQLKDLRLYQNQLKS-------VPD--GVFDRL 147 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSC-------CCT--TTTTTC
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCC--cCcccCHhHhccCCcCCEEECCCCccce-------eCH--HHhccC
Confidence 9999999999999876 689999999999999 57778765 7999999999997776443 221 235556
Q ss_pred ccCCCeeEEeccCC
Q 039885 632 RHLRGSLRIRGLGN 645 (674)
Q Consensus 632 ~~L~g~L~i~~l~~ 645 (674)
.+|+ .|.+.++..
T Consensus 148 ~~L~-~L~l~~N~~ 160 (208)
T 2o6s_A 148 TSLQ-YIWLHDNPW 160 (208)
T ss_dssp TTCC-EEECCSCCB
T ss_pred CCcc-EEEecCCCe
Confidence 6676 777776543
No 82
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=9.1e-13 Score=128.21 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=120.8
Q ss_pred eEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchh-HhhccCCceeEEEeccccccccccccccccc-cccCCCC
Q 039885 475 RHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLP-RLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EIEKLIH 552 (674)
Q Consensus 475 r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i~~L~~ 552 (674)
+.+.++++.+..+|..+. ..++.|++++|. +....+ ..|..+++|++|+| ++|.++.+|. .|+++.+
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L-------~~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE--FTVLEATGIFKKLPQLRKINF-------SNNKITDIEEGAFEGASG 82 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCEECCCCCGGGCTTCCEEEC-------CSSCCCEECTTTTTTCTT
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc--CCccCchhhhccCCCCCEEEC-------CCCcCCEECHHHhCCCCC
Confidence 478888888888887654 457899999998 766533 45899999999999 9999999665 8999999
Q ss_pred CcceeecCCCCcccccc-ccCCCcccEEEecccccccccc-ccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 553 LRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRL-PHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 553 Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
|++|+|++|.++.+|+. ++.+++|++|+|++| .+..+ |..|..+++|++|++..|.++. .....+..
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------~~~~~~~~ 151 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSN--RITCVGNDSFIGLSSVRLLSLYDNQITT---------VAPGAFDT 151 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS--CCCCBCTTSSTTCTTCSEEECTTSCCCC---------BCTTTTTT
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCC--cCCeECHhHcCCCccCCEEECCCCcCCE---------ECHHHhcC
Confidence 99999999999988775 899999999999999 56666 6779999999999997776444 12344556
Q ss_pred cccCCCeeEEeccCCCC
Q 039885 631 LRHLRGSLRIRGLGNVK 647 (674)
Q Consensus 631 L~~L~g~L~i~~l~~~~ 647 (674)
+++|+ .|.+.++....
T Consensus 152 l~~L~-~L~L~~N~l~c 167 (220)
T 2v70_A 152 LHSLS-TLNLLANPFNC 167 (220)
T ss_dssp CTTCC-EEECCSCCEEC
T ss_pred CCCCC-EEEecCcCCcC
Confidence 66676 77777765443
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.39 E-value=1.7e-12 Score=141.48 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=76.1
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLI 551 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~ 551 (674)
..++.+.+..+.+..+| .+..+++|++|++++|. +....+ +.++++|++|++ ++|.+..+|. +++++
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~--l~~~~~--~~~l~~L~~L~l-------~~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ--LTDITP--LKNLTKLVDILM-------NNNQIADITP-LANLT 112 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSC--CCCCGG--GTTCTTCCEEEC-------CSSCCCCCGG-GTTCT
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCc--cCCchh--hhccccCCEEEC-------CCCccccChh-hcCCC
Confidence 45666666666666655 35666777777777665 554333 667777777777 6666666655 66777
Q ss_pred CCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeee
Q 039885 552 HLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSE 606 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l 606 (674)
+|++|+|++|.++.+|. ++++++|++|++++| .+..+|. ++.+++|++|++
T Consensus 113 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~l 163 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN--TISDISA-LSGLTSLQQLSF 163 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE--EECCCGG-GTTCTTCSEEEE
T ss_pred CCCEEECCCCCCCCChH-HcCCCCCCEEECCCC--ccCCChh-hccCCcccEeec
Confidence 77777777777666665 667777777777766 4555543 555555555555
No 84
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.39 E-value=1.2e-12 Score=136.02 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=39.7
Q ss_pred cccccccccccccCCCCCcceeecCCCCcccc-ccccCCCcccEEEecccccccccccc-ccccCccCCeeeeeeeC
Q 039885 536 SRGMIREIPKEIEKLIHLRFLQLRDLMIDELP-ETCCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 536 ~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l~~~~ 610 (674)
++|.++.+|..+. .+|++|+|++|.++.+| ..++.+++|++|++++| .+..+|. .+..+++|++|++..|.
T Consensus 180 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 180 SEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN--QIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS--CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC--cCCcCChhHhhCCCCCCEEECCCCc
Confidence 4444444444433 45566666666655544 35666666666666666 3444433 46666666666665554
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=8.8e-13 Score=135.58 Aligned_cols=175 Identities=15% Similarity=0.038 Sum_probs=122.4
Q ss_pred ceeEEEEEcCCcC-Cccccc--cCCCCceEEEecCCCcccccchh----HhhccCCceeEEEecccccccccccccccc-
Q 039885 473 KLRHSMLMLGFEA-SFPDSL--LNAKKLRSFLISSPYDVFSSVLP----RLFDQLTCLRTLKIVAHDRRWSRGMIREIP- 544 (674)
Q Consensus 473 ~~r~l~l~~~~~~-~~p~~~--~~l~~L~~L~l~~~~~~~~~~~~----~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp- 544 (674)
.+++|.+.+|.+. ..|..+ ..+++|++|++++|. +....+ ..+..+++|++|+| ++|.+..+|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--i~~~~~~~~~~~~~~~~~L~~L~L-------s~n~l~~~~~ 162 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS--WATGRSWLAELQQWLKPGLKVLSI-------AQAHSPAFSC 162 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC--CSSTTSSHHHHHTTBCSCCCEEEE-------ECCSSCCCCT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc--ccchhhhhHHHHhhhccCCCEEEe-------eCCCcchhhH
Confidence 4888888888775 455555 778889999998887 544322 33457888999999 888887744
Q ss_pred ccccCCCCCcceeecCCCCcc---cccc--ccCCCcccEEEeccccccccccccc----cccCccCCeeeeeeeCccCCC
Q 039885 545 KEIEKLIHLRFLQLRDLMIDE---LPET--CCELFNLQTLEIRQRGYYLRRLPHG----FGRLVNLRHLSEFVVGITGSR 615 (674)
Q Consensus 545 ~~i~~L~~Lr~L~L~~~~i~~---lP~~--i~~L~~L~~L~l~~~~~~~~~lP~~----i~~L~~L~~L~l~~~~~~~~~ 615 (674)
..++.+++|++|+|++|.+.. +|.. ++.+++|++|++++| .+..+|.. ++.+++|++|++..|.+..
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-- 238 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT--GMETPTGVCAALAAAGVQPHSLDLSHNSLRA-- 238 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS--CCCCHHHHHHHHHHHTCCCSSEECTTSCCCC--
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC--CCCchHHHHHHHHhcCCCCCEEECCCCCCCc--
Confidence 678888999999999988653 5433 368888999999988 56666653 5778899999997776544
Q ss_pred CCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 616 NDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 616 ~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
. .+..+..+..+++|+ .|.++++.-. . .+..+. ++|+.|+|++|+
T Consensus 239 --~--~p~~~~~~~~~~~L~-~L~Ls~N~l~-~----lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 239 --T--VNPSAPRCMWSSALN-SLNLSFAGLE-Q----VPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp --C--CCSCCSSCCCCTTCC-CEECCSSCCC-S----CCSCCC--SCCSCEECCSCC
T ss_pred --c--chhhHHhccCcCcCC-EEECCCCCCC-c----hhhhhc--CCCCEEECCCCc
Confidence 1 244445554446677 6777664332 2 223332 688899988875
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.38 E-value=1.1e-12 Score=148.16 Aligned_cols=130 Identities=20% Similarity=0.180 Sum_probs=87.6
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccc-ccc
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPK-EIE 548 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~-~i~ 548 (674)
.+.++.+.+++|.+..+|..+..+++|++|++++|. +....|..+..+++|+.|++ ++|.+.. +|. .++
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l-------~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK--FENLCQISASNFPSLTHLSI-------KGNTKRLELGTGCLE 347 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC--CSBGGGGCGGGCTTCSEEEC-------CSCSSCCBCCSSTTT
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCC--cCcCchhhhhccCcCCEEEC-------CCCCcccccchhhhh
Confidence 456778888888777777777778888888888777 66656666777777777777 6666553 443 366
Q ss_pred CCCCCcceeecCCCCccc---cccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeC
Q 039885 549 KLIHLRFLQLRDLMIDEL---PETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~l---P~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 610 (674)
++++|++|++++|.+..+ |..++.+++|++|++++| ......|..+..+++|++|++..|.
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCc
Confidence 777777777777776654 455666777777777766 3333335556666666666664444
No 87
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=1.3e-13 Score=157.98 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=68.2
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLI 551 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~ 551 (674)
..++.|.+++|.+..+|..+.++++|++|++++|. +. .+|..|.+|++|++|+| ++|.++.+|..|++|.
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~--l~-~lp~~~~~l~~L~~L~L-------s~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS--LT-ELPAEIKNLSNLRVLDL-------SHNRLTSLPAELGSCF 293 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC--CS-CCCGGGGGGTTCCEEEC-------TTSCCSSCCSSGGGGT
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc--Cc-ccChhhhCCCCCCEEeC-------cCCcCCccChhhcCCC
Confidence 45566666666665566555566666666666665 44 24555666666666666 6666666666666666
Q ss_pred CCcceeecCCCCccccccccCCCcccEEEeccccccccccccccc
Q 039885 552 HLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFG 596 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~ 596 (674)
+|++|+|++|.|+.+|.+|++|++|++|+|++| ...+.+|..+.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~~ 337 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQFLKILT 337 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHHHHHHH
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCChHHHh
Confidence 666666666666666666666666666666666 33334444443
No 88
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=1.7e-12 Score=129.94 Aligned_cols=126 Identities=16% Similarity=0.212 Sum_probs=105.6
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccC
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEK 549 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~ 549 (674)
....++.|.+++|.+..+|. +..+++|+.|++++|. +.. +|. +.. ++|+.|+| ++|.++.+| .++.
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~--l~~-l~~-~~~-~~L~~L~L-------~~N~l~~~~-~l~~ 126 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR--LKN-LNG-IPS-ACLSRLFL-------DNNELRDTD-SLIH 126 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC--CSC-CTT-CCC-SSCCEEEC-------CSSCCSBSG-GGTT
T ss_pred hCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc--cCC-cCc-ccc-CcccEEEc-------cCCccCCCh-hhcC
Confidence 35678999999999888876 8899999999999988 655 343 333 88999999 999998876 5889
Q ss_pred CCCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccC
Q 039885 550 LIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~ 613 (674)
+++|++|+|++|.++.+| .++.+++|++|++++| .+..+ ..+..+++|++|++..|.+..
T Consensus 127 l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N--~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN--EITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS--CCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred cccccEEECCCCcCCCCh-HHccCCCCCEEECCCC--cCcch-HHhccCCCCCEEeCCCCcccC
Confidence 999999999999999887 6889999999999998 56666 668899999999998887544
No 89
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.37 E-value=3.3e-12 Score=133.42 Aligned_cols=169 Identities=18% Similarity=0.248 Sum_probs=131.9
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccC
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEK 549 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~ 549 (674)
....+++|.+.+|.+..+| .+..+++|++|++++|. +... +. +..+++|+.|++ ++|.....+..++.
T Consensus 86 ~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~--i~~~-~~-~~~l~~L~~L~l-------~~n~~~~~~~~~~~ 153 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN--ISDI-SP-LANLTKMYSLNL-------GANHNLSDLSPLSN 153 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC--CCCC-GG-GTTCTTCCEEEC-------TTCTTCCCCGGGTT
T ss_pred cCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc--ccCc-hh-hccCCceeEEEC-------CCCCCcccccchhh
Confidence 4578999999999888776 68899999999999987 6653 33 889999999999 88865444445899
Q ss_pred CCCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhcc
Q 039885 550 LIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLG 629 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 629 (674)
+++|++|++++|.+..+|. ++.+++|++|++++| .+..+|. +..+++|++|++..+.+.. .+ .+.
T Consensus 154 l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~l~~n~l~~-------~~----~~~ 218 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN--QIEDISP-LASLTSLHYFTAYVNQITD-------IT----PVA 218 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS--CCCCCGG-GGGCTTCCEEECCSSCCCC-------CG----GGG
T ss_pred CCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC--ccccccc-ccCCCccceeecccCCCCC-------Cc----hhh
Confidence 9999999999999888876 889999999999998 5777776 8899999999997665333 11 156
Q ss_pred CcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 630 QLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 630 ~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
.+++|+ .|.++++..... +. +..+++|+.|+|+.|+
T Consensus 219 ~~~~L~-~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 219 NMTRLN-SLKIGNNKITDL-----SP-LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp GCTTCC-EEECCSSCCCCC-----GG-GTTCTTCCEEECCSSC
T ss_pred cCCcCC-EEEccCCccCCC-----cc-hhcCCCCCEEECCCCc
Confidence 667777 787777543221 11 7788899999998874
No 90
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.37 E-value=1.4e-12 Score=141.75 Aligned_cols=129 Identities=17% Similarity=0.170 Sum_probs=94.3
Q ss_pred CceeEEEecccccccccccccc-ccccccCCCCCcceeecCCCCccc-cccccCCCcccEEEecccccccccc-cccccc
Q 039885 521 TCLRTLKIVAHDRRWSRGMIRE-IPKEIEKLIHLRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRL-PHGFGR 597 (674)
Q Consensus 521 ~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~~L~~Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~l-P~~i~~ 597 (674)
++|+.|++ ++|.+.. .|..++.+++|++|+|++|.++.+ |..++.+++|++|++++| .+..+ |..+..
T Consensus 275 ~~L~~L~l-------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~ 345 (455)
T 3v47_A 275 SGVKTCDL-------SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN--FLGSIDSRMFEN 345 (455)
T ss_dssp SCCCEEEC-------CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCEECGGGGTT
T ss_pred cCceEEEe-------cCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC--ccCCcChhHhcC
Confidence 34555555 6666666 567788999999999999998876 557899999999999998 45655 667899
Q ss_pred CccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 598 LVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 598 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+++|++|++..|.++. .....+..+++|+ .|.++++.-.. .....+..+++|+.|+|+.|+
T Consensus 346 l~~L~~L~Ls~N~l~~---------~~~~~~~~l~~L~-~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRA---------LGDQSFLGLPNLK-ELALDTNQLKS----VPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CTTCCEEECCSSCCCE---------ECTTTTTTCTTCC-EEECCSSCCSC----CCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCEEECCCCcccc---------cChhhcccccccc-EEECCCCcccc----CCHhHhccCCcccEEEccCCC
Confidence 9999999997776433 2234456667777 78777753222 122346788999999998875
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.37 E-value=1.6e-13 Score=142.86 Aligned_cols=179 Identities=16% Similarity=0.057 Sum_probs=121.9
Q ss_pred CCceeEEEEEcCCcCC--ccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccc-cccc--ccc
Q 039885 471 KEKLRHSMLMLGFEAS--FPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRG-MIRE--IPK 545 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~-~l~~--lp~ 545 (674)
...+++|++++|.+.. +|..+..+++|++|++++|. +....+..+..+++|++|++ ++| .++. +|.
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~l~~~~~L~~L~L-------~~~~~l~~~~l~~ 162 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR--LSDPIVNTLAKNSNLVRLNL-------SGCSGFSEFALQT 162 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--CCHHHHHHHTTCTTCSEEEC-------TTCBSCCHHHHHH
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc--cCHHHHHHHhcCCCCCEEEC-------CCCCCCCHHHHHH
Confidence 4677888888776642 56667778888888888876 65556667777888888888 777 4663 676
Q ss_pred cccCCCCCcceeecCC-CCcc--ccccccCCC-cccEEEeccccc-cc--cccccccccCccCCeeeeeeeCccCCCCCC
Q 039885 546 EIEKLIHLRFLQLRDL-MIDE--LPETCCELF-NLQTLEIRQRGY-YL--RRLPHGFGRLVNLRHLSEFVVGITGSRNDS 618 (674)
Q Consensus 546 ~i~~L~~Lr~L~L~~~-~i~~--lP~~i~~L~-~L~~L~l~~~~~-~~--~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~ 618 (674)
.+.++++|++|+|++| .++. +|..+..++ +|++|++++| . .+ ..+|..+.++++|++|++..+. . .
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~----l 235 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY-RKNLQKSDLSTLVRRCPNLVHLDLSDSV--M----L 235 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC-GGGSCHHHHHHHHHHCTTCSEEECTTCT--T----C
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC-cccCCHHHHHHHHhhCCCCCEEeCCCCC--c----C
Confidence 6777888888888888 6763 677777788 8888888887 2 12 5567777778888888885544 1 0
Q ss_pred CCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeec
Q 039885 619 RSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFD 671 (674)
Q Consensus 619 ~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~ 671 (674)
....+..+..+++|+ .|.++++..+.+ .....+.++++|+.|+|+.|
T Consensus 236 --~~~~~~~l~~l~~L~-~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 236 --KNDCFQEFFQLNYLQ-HLSLSRCYDIIP---ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp --CGGGGGGGGGCTTCC-EEECTTCTTCCG---GGGGGGGGCTTCCEEECTTS
T ss_pred --CHHHHHHHhCCCCCC-EeeCCCCCCCCH---HHHHHHhcCCCCCEEeccCc
Confidence 123344566667777 777776653322 11234566777888777654
No 92
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.37 E-value=1e-11 Score=122.31 Aligned_cols=198 Identities=13% Similarity=0.091 Sum_probs=122.0
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++||+..++.+..++.... ..+++.|+|++|+||||||+.+++.......+.. ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHh
Confidence 469999999999999987432 2347899999999999999999874321111100 00000000 00000
Q ss_pred HHhhC-----CCCCcccHHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh-HH
Q 039885 217 EALEG-----SATNLVELNALLLRINES----IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET-VA 286 (674)
Q Consensus 217 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va 286 (674)
..... ........+.+...+... ..+++.+||+||++..+...++.+...+.....+..+|+||+... +.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 00000 000011112222222111 235689999999988777778888888876666788888887643 11
Q ss_pred h-hcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039885 287 G-MMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL 350 (674)
Q Consensus 287 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 350 (674)
. .......+++.+++.++..+++...+...+.... .+....|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1122458999999999999999887754332222 2446679999999999988876543
No 93
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=7.6e-13 Score=151.64 Aligned_cols=88 Identities=25% Similarity=0.210 Sum_probs=42.7
Q ss_pred hHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCccccccccCCCcccEEEecccccccccccc
Q 039885 514 PRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPH 593 (674)
Q Consensus 514 ~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~ 593 (674)
+..|..++.|++|+| ++|.+..+|..+++|.+|++|+|++|.|+.+|.++++|++|++|+|++| .+..+|.
T Consensus 217 ~~~~~~l~~L~~L~L-------s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N--~l~~lp~ 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDL-------SNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN--RLTSLPA 287 (727)
T ss_dssp -----CCCCCCEEEC-------TTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS--CCSSCCS
T ss_pred hhhhccCCCCcEEEC-------CCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC--cCCccCh
Confidence 444455555555555 5555555555555555555555555555555555555555555555555 3445555
Q ss_pred ccccCccCCeeeeeeeC
Q 039885 594 GFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 594 ~i~~L~~L~~L~l~~~~ 610 (674)
.|++|++|++|++..|.
T Consensus 288 ~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp SGGGGTTCSEEECCSSC
T ss_pred hhcCCCCCCEEECCCCC
Confidence 55555555555554443
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=151.39 Aligned_cols=172 Identities=21% Similarity=0.185 Sum_probs=134.7
Q ss_pred eEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccc-cccc-cccccCCCC
Q 039885 475 RHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGM-IREI-PKEIEKLIH 552 (674)
Q Consensus 475 r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~-l~~l-p~~i~~L~~ 552 (674)
+.++.+.+.+..+|. -.++|+.|++++|. +....|..|.++++|++|+| ++|. +..+ |..|++|++
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~--i~~i~~~~~~~l~~L~~LdL-------s~n~~~~~i~~~~f~~L~~ 74 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNY--IRTVTASSFPFLEQLQLLEL-------GSQYTPLTIDKEAFRNLPN 74 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCC--CCEECSSSCSSCCSCSEEEE-------CTTCCCCEECTTTTSSCTT
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCc--CCccChhHCcccccCeEEeC-------CCCCCccccCHHHhcCCCC
Confidence 445666777788886 45899999999998 87777888999999999999 8885 4456 788999999
Q ss_pred CcceeecCCCCccc-cccccCCCcccEEEeccccccccccccc--cccCccCCeeeeeeeCccCCCCCCCCCCCChhhcc
Q 039885 553 LRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRLPHG--FGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLG 629 (674)
Q Consensus 553 Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~lP~~--i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 629 (674)
|++|+|++|.+..+ |..++++++|++|+|++| ...+.+|.. +++|++|++|++..|.+.. .+ ....+.
T Consensus 75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-------~~-~~~~~~ 145 (844)
T 3j0a_A 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRS-------LY-LHPSFG 145 (844)
T ss_dssp CCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCC-------CC-CCGGGG
T ss_pred CCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccc-------cc-cchhHh
Confidence 99999999999876 789999999999999999 544556766 9999999999998877433 11 123567
Q ss_pred CcccCCCeeEEeccCCCCChhhhhhccCCcc--CCCCeEEEeecC
Q 039885 630 QLRHLRGSLRIRGLGNVKDVDEAKSAGLENK--MNLLHLGLGFDK 672 (674)
Q Consensus 630 ~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~--~~L~~L~L~~~~ 672 (674)
+|++|+ .|.+++...... .+..+..+ ++|+.|+|+.|.
T Consensus 146 ~L~~L~-~L~Ls~N~i~~~----~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 146 KLNSLK-SIDFSSNQIFLV----CEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp TCSSCC-EEEEESSCCCCC----CSGGGHHHHHCSSCCCEECCSB
T ss_pred hCCCCC-EEECCCCcCCee----CHHHcccccCCccceEECCCCc
Confidence 777787 888887543221 12334444 789999999874
No 95
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.36 E-value=1.2e-12 Score=132.04 Aligned_cols=141 Identities=23% Similarity=0.172 Sum_probs=112.2
Q ss_pred CCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccCCCCCcceeecC
Q 039885 482 GFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEKLIHLRFLQLRD 560 (674)
Q Consensus 482 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L~~Lr~L~L~~ 560 (674)
..+..+|..+. ++|+.|++++|. +....+..|.++++|++|++ ++|.+..+| ..++++++|++|+|++
T Consensus 17 ~~l~~ip~~l~--~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l-------~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 17 LNFYKIPDNLP--FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDL-------SRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTCC--CCEECTTTTTTCTTCSEEEC-------TTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCccccCCCCC--CCccEEECCCCc--ccccCHhHhccccCCcEEEC-------CCCcCCccCHHHccCCcCCCEEECCC
Confidence 34455676543 579999999998 77766768999999999999 999999866 4799999999999999
Q ss_pred CCCcccc-ccccCCCcccEEEecccccccccccc-ccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCee
Q 039885 561 LMIDELP-ETCCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSL 638 (674)
Q Consensus 561 ~~i~~lP-~~i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L 638 (674)
|.++.+| ..+.++++|++|++++| .+..+|. .++++++|++|++..|.+.. ...+..+.++++|+ .|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~l~~~~~~l~~L~-~L 154 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVET--NLASLENFPIGHLKTLKELNVAHNLIQS--------FKLPEYFSNLTNLE-HL 154 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTS--CCCCSTTCCCTTCTTCCEEECCSSCCCC--------CCCCGGGGGCTTCC-EE
T ss_pred CccCccChhhhcCCccccEEECCCC--CccccCchhcccCCCCCEEECcCCccce--------ecCchhhccCCCCC-EE
Confidence 9999877 56899999999999999 5666765 69999999999997766332 11234566667777 77
Q ss_pred EEeccC
Q 039885 639 RIRGLG 644 (674)
Q Consensus 639 ~i~~l~ 644 (674)
.++++.
T Consensus 155 ~Ls~N~ 160 (276)
T 2z62_A 155 DLSSNK 160 (276)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 776643
No 96
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=8.8e-13 Score=123.50 Aligned_cols=126 Identities=20% Similarity=0.105 Sum_probs=91.9
Q ss_pred CCceeEEEEEcCCcCCccccccCC-CCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccc-c
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNA-KKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEI-E 548 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i-~ 548 (674)
+..++.|.+++|.+..+|. +..+ ++|+.|++++|. +.+. ..|..+++|++|+| ++|.++.+|+.+ +
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~--l~~~--~~l~~l~~L~~L~L-------s~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE--IRKL--DGFPLLRRLKTLLV-------NNNRICRIGEGLDQ 85 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC--CCEE--CCCCCCSSCCEEEC-------CSSCCCEECSCHHH
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC--CCcc--cccccCCCCCEEEC-------CCCcccccCcchhh
Confidence 4567788888887776654 3443 378888888776 5553 34777788888888 788777777554 7
Q ss_pred CCCCCcceeecCCCCccccc--cccCCCcccEEEeccccccccccccc----cccCccCCeeeeeeeC
Q 039885 549 KLIHLRFLQLRDLMIDELPE--TCCELFNLQTLEIRQRGYYLRRLPHG----FGRLVNLRHLSEFVVG 610 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~~~~~lP~~----i~~L~~L~~L~l~~~~ 610 (674)
.+++|++|+|++|.++.+|. .++.+++|++|++++| .+..+|.. ++.+++|++|++..|.
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N--~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN--PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS--GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC--CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 78888888888888877776 6777888888888887 56677764 7778888888775554
No 97
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.35 E-value=3.1e-12 Score=138.72 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=91.3
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLI 551 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~ 551 (674)
+.+++|.+++|.+..+| +..+++|+.|++++|. +.+. + +.++++|++|++ ++|.++++| ++.++
T Consensus 64 ~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~--l~~~-~--~~~l~~L~~L~L-------~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK--LTNL-D--VTPLTKLTYLNC-------DTNKLTKLD--VSQNP 127 (457)
T ss_dssp TTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC--CSCC-C--CTTCTTCCEEEC-------CSSCCSCCC--CTTCT
T ss_pred CCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC--Ccee-e--cCCCCcCCEEEC-------CCCcCCeec--CCCCC
Confidence 45556666666555543 5555666666666555 4442 2 555666666666 666655554 55666
Q ss_pred CCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCc
Q 039885 552 HLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQL 631 (674)
Q Consensus 552 ~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 631 (674)
+|++|++++|.++.+| ++.+++|++|++++| ..++.+ .++.+++|++|++..|.++. .+ +..+
T Consensus 128 ~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n-~~~~~~--~~~~l~~L~~L~ls~n~l~~-------l~-----l~~l 190 (457)
T 3bz5_A 128 LLTYLNCARNTLTEID--VSHNTQLTELDCHLN-KKITKL--DVTPQTQLTTLDCSFNKITE-------LD-----VSQN 190 (457)
T ss_dssp TCCEEECTTSCCSCCC--CTTCTTCCEEECTTC-SCCCCC--CCTTCTTCCEEECCSSCCCC-------CC-----CTTC
T ss_pred cCCEEECCCCccceec--cccCCcCCEEECCCC-Cccccc--ccccCCcCCEEECCCCccce-------ec-----cccC
Confidence 6666666666665553 556666666666666 445544 25666666666665554322 11 4445
Q ss_pred ccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 632 RHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 632 ~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+.|+ .|.+.+..-.. ..+..+++|+.|+|++|+
T Consensus 191 ~~L~-~L~l~~N~l~~-------~~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 191 KLLN-RLNCDTNNITK-------LDLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp TTCC-EEECCSSCCSC-------CCCTTCTTCSEEECCSSC
T ss_pred CCCC-EEECcCCcCCe-------eccccCCCCCEEECcCCc
Confidence 5555 56555443211 136777888888888774
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=7.2e-13 Score=139.33 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=81.7
Q ss_pred CCceeEEEEEcCCcCCcccc-cc-CCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cc
Q 039885 471 KEKLRHSMLMLGFEASFPDS-LL-NAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EI 547 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i 547 (674)
+..++.|++++|.+..++.. +. ++++|+.|++++|. +....+..|.++++|+.|+| ++|.+..+|. .|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~L-------s~N~l~~~~~~~~ 108 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH--LNFISSEAFVPVPNLRYLDL-------SSNHLHTLDEFLF 108 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEEC-------CSSCCCEECTTTT
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc--CCccChhhccCCCCCCEEEC-------CCCcCCcCCHHHh
Confidence 44566677777766655443 33 66677777777666 55555556667777777777 6676666543 46
Q ss_pred cCCCCCcceeecCCCCccc-cccccCCCcccEEEecccccccccccccc----ccCccCCeeeeeeeC
Q 039885 548 EKLIHLRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRLPHGF----GRLVNLRHLSEFVVG 610 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~lP~~i----~~L~~L~~L~l~~~~ 610 (674)
.++.+|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+|..+ ..+++|++|++..|.
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN--QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC--cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 6677777777777776655 445666777777777776 566666653 456677777775554
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.35 E-value=1.5e-12 Score=149.03 Aligned_cols=173 Identities=19% Similarity=0.191 Sum_probs=133.3
Q ss_pred eEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-ccccccCCCCC
Q 039885 475 RHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIEKLIHL 553 (674)
Q Consensus 475 r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~~L~~L 553 (674)
+.++.+++.+..+|..+. +++++|++++|. +....+..|.++++|++|+| ++|.+.. .|..++++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~~~~~l~~L 75 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQ--LRRLPAANFTRYSQLTSLDV-------GFNTISKLEPELCQKLPML 75 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSC--CCCCCGGGGGGGTTCSEEEC-------CSSCCCCCCTTHHHHCTTC
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCC--CCCcCHHHHhCCCcCcEEEC-------CCCccCccCHHHHhcccCc
Confidence 346666777778887654 799999999998 88877778999999999999 9999988 47789999999
Q ss_pred cceeecCCCCccccc-cccCCCcccEEEeccccccccccc-cccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCc
Q 039885 554 RFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLRRLP-HGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQL 631 (674)
Q Consensus 554 r~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 631 (674)
++|+|++|.++.+|+ .++++++|++|++++| .+..+| ..|+++++|++|++..|.+.. ..+..+.++
T Consensus 76 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l 144 (680)
T 1ziw_A 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSN--SIQKIKNNPFVKQKNLITLDLSHNGLSS---------TKLGTQVQL 144 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--CCCCCCSCTTTTCTTCCEEECCSSCCSC---------CCCCSSSCC
T ss_pred CEEECCCCccCccChhhhccCCCCCEEECCCC--ccCccChhHccccCCCCEEECCCCcccc---------cCchhhccc
Confidence 999999999999998 5999999999999999 567776 569999999999997776433 233445667
Q ss_pred ccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 632 RHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 632 ~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
++|+ .|.+++........... ....+++|+.|+|++|+
T Consensus 145 ~~L~-~L~L~~n~l~~~~~~~~--~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 145 ENLQ-ELLLSNNKIQALKSEEL--DIFANSSLKKLELSSNQ 182 (680)
T ss_dssp TTCC-EEECCSSCCCCBCHHHH--GGGTTCEESEEECTTCC
T ss_pred ccCC-EEEccCCcccccCHHHh--hccccccccEEECCCCc
Confidence 7777 77777654322111111 12244677888887763
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.35 E-value=1.5e-12 Score=147.57 Aligned_cols=139 Identities=24% Similarity=0.178 Sum_probs=113.7
Q ss_pred CcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cccCCCCCcceeecCC
Q 039885 483 FEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EIEKLIHLRFLQLRDL 561 (674)
Q Consensus 483 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i~~L~~Lr~L~L~~~ 561 (674)
.+..+|..+. ++++.|++++|. +..+.+..|.++++|++|+| ++|.++.+|+ .|++|++|++|+|++|
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~L-------s~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDL-------SRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSC--CCEECTTTTTTCTTCCEEEC-------TTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcCccCCCCC--cCCCEEEeeCCC--CCCCCHHHHhCCCCCCEEEC-------CCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 4567786553 579999999998 88877888999999999999 9999999765 6999999999999999
Q ss_pred CCccccc-cccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeE
Q 039885 562 MIDELPE-TCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLR 639 (674)
Q Consensus 562 ~i~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~ 639 (674)
+++.+|+ .+++|++|++|++++| .+..+|.. |++|++|++|++..|.+.. ......+..|+.|+ .|.
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N--~l~~l~~~~~~~L~~L~~L~Ls~N~l~~--------~~~~~~~~~l~~L~-~L~ 179 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVET--NLASLENFPIGHLKTLKELNVAHNLIQS--------FKLPEYFSNLTNLE-HLD 179 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTS--CCCCSTTCCCTTCTTCCEEECCSSCCCC--------CCCCGGGGGCTTCC-EEE
T ss_pred cCCCCCHHHhcCCCCCCEEECCCC--cCCCCChhhhhcCcccCeeccccCcccc--------CCCchhhccchhhh-hhc
Confidence 9999987 4799999999999999 67888764 9999999999997776433 12233455566666 676
Q ss_pred Eecc
Q 039885 640 IRGL 643 (674)
Q Consensus 640 i~~l 643 (674)
++++
T Consensus 180 L~~N 183 (635)
T 4g8a_A 180 LSSN 183 (635)
T ss_dssp CCSS
T ss_pred ccCc
Confidence 6654
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=1e-12 Score=143.84 Aligned_cols=173 Identities=15% Similarity=0.055 Sum_probs=114.5
Q ss_pred CCceeEEEEEcCCcCCcc-ccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccc---
Q 039885 471 KEKLRHSMLMLGFEASFP-DSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE--- 546 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~--- 546 (674)
++++++|++++|.+..++ ..+..+++|++|++++|. +.+.+| |..+++|++|+| ++|.++++|..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~L-------s~N~l~~l~~~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDL-------NNNYVQELLVGPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC--CEEEEE--CTTCTTCCEEEC-------CSSEEEEEEECTTC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC--CCCCcc--cccCCCCCEEEe-------cCCcCCCCCCCCCc
Confidence 347888888888776554 567788888888888887 655444 777788888888 66666554421
Q ss_pred --------------ccCCCCCcceeecCCCCccc-cccccCCCcccEEEeccccccccccccccc-cCccCCeeeeeeeC
Q 039885 547 --------------IEKLIHLRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRLPHGFG-RLVNLRHLSEFVVG 610 (674)
Q Consensus 547 --------------i~~L~~Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~lP~~i~-~L~~L~~L~l~~~~ 610 (674)
...+++|++|+|++|.++.+ |..++.+++|++|+|++| ...+..|..+. .+++|++|++..|.
T Consensus 102 ~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc
Confidence 12356677777777777655 446777888888888887 43444566665 67888888886665
Q ss_pred ccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 611 ITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 611 ~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
++. . ..+..++.|+ .|.++++.... .+..+..+++|+.|+|++|+
T Consensus 181 l~~-------~----~~~~~l~~L~-~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 181 IYD-------V----KGQVVFAKLK-TLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CCE-------E----ECCCCCTTCC-EEECCSSCCCE-----ECGGGGGGTTCSEEECTTSC
T ss_pred ccc-------c----cccccCCCCC-EEECCCCCCCC-----CCHhHcCCCCccEEEecCCc
Confidence 433 1 2222456666 67776653221 23347778889999998874
No 102
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=1.5e-11 Score=130.37 Aligned_cols=282 Identities=11% Similarity=0.014 Sum_probs=166.3
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccc----cc--cceEEEEEeCCCC-CHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI----NH--FGKRIWVCVSDPF-DEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~ 209 (674)
.+++||+.+++++..++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|++++... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988754211 1235689999999999999999998742111 11 2346788877766 888
Q ss_pred HHHHHHHHHhhCCCC--CcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHH-HHhhcCCCCCcEEEEEcCChhHH
Q 039885 210 RIAKAIIEALEGSAT--NLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESF-RRCLINGQRGSKILVTTRKETVA 286 (674)
Q Consensus 210 ~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~IivTtR~~~va 286 (674)
.++..++.++.+... .......+...+...+..++.+|||||++......+..+ ...+.....+..||+||+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 999999998854322 123345666777777877666999999965321111122 22332222677899998865321
Q ss_pred h----hc--CCCCeEeCCCCChHhhHHHHHHHhhcC-CCCCChhhHHHHHHHHHHHcC---CChHHH-HHHHHH--hc--
Q 039885 287 G----MM--ESTDVISIKELSERECWSLFERIAFFN-RPSLECEQLEEFGRKIVSKCK---GLPLAV-KTIGSL--LR-- 351 (674)
Q Consensus 287 ~----~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~l~~~~~~I~~~c~---GlPLai-~~~~~~--L~-- 351 (674)
. .+ .....+.+.+++.++..++|...+... ......+ +....|++.|+ |.|..+ ..+-.. +.
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 1 11 112389999999999999999875321 1111112 23445777776 988743 333222 22
Q ss_pred -cCCChHHHHHHHhhhccc-cccccCCcccChhhHHHHHHHhccccCCC-------------CccHHHHHHHHHHHHHHc
Q 039885 352 -FKRSLRVWQSILDSQMWQ-LEEFERDYRMDKDELIKLWLAQGYIRPKE-------------NKELEMIGEEYFDYLATR 416 (674)
Q Consensus 352 -~~~~~~~w~~~l~~~~~~-l~~~~~~~~~~~~~li~~Wiaeg~i~~~~-------------~~~~e~~~~~~~~~Lv~r 416 (674)
..-+.+.+..+++..... +...-.+. -..+.++-.|++.++-.... .........++++.|...
T Consensus 255 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~ 333 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYEQERLIEAVKAL-PFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMF 333 (384)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHhcchHHHHHHcC-CHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Confidence 235677777766543210 00000011 13456666777761110000 000123345678899999
Q ss_pred CCCccccc
Q 039885 417 SFFQEFET 424 (674)
Q Consensus 417 sll~~~~~ 424 (674)
+++.....
T Consensus 334 gli~~~~~ 341 (384)
T 2qby_B 334 GIVKIRII 341 (384)
T ss_dssp TSEEEEEE
T ss_pred CCEEEEec
Confidence 99987543
No 103
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.34 E-value=1.1e-12 Score=112.24 Aligned_cols=54 Identities=22% Similarity=0.429 Sum_probs=50.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhc--ccCChHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 039885 1 VKLLQDNFEAIQAVLVDADRR--QMAEEPVRLWLEKLKYASYDMEDVLDEWNTARL 54 (674)
Q Consensus 1 i~~l~~~l~~i~~~l~da~~~--~~~~~~~~~wl~~lrd~ayd~eD~lD~~~~~~~ 54 (674)
|++|+++|++|++||.||+.+ +..+++++.|+++|||+|||+|||||+|.++..
T Consensus 28 i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 28 IEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999998 568999999999999999999999999998873
No 104
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.34 E-value=3.1e-11 Score=127.98 Aligned_cols=201 Identities=17% Similarity=0.117 Sum_probs=129.0
Q ss_pred cCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccc---c-cceEEEEEeCCCCCHHHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVIN---H-FGKRIWVCVSDPFDEYRI 211 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~~ 211 (674)
+..++||+.+++++..++..... ....+.+.|+|++|+||||||+.+++...... . -...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36799999999999998854311 12456789999999999999999987421110 0 124568888888889999
Q ss_pred HHHHHHHhhCCCCC-cccHHHHHHHHHHHc--CCCeEEEEEeCCCCCChh--hHHHHHHhhc---CC--CCCcEEEEEcC
Q 039885 212 AKAIIEALEGSATN-LVELNALLLRINESI--AREKFLLVLDDVWTEDYN--KWESFRRCLI---NG--QRGSKILVTTR 281 (674)
Q Consensus 212 ~~~il~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l~~~l~---~~--~~gs~IivTtR 281 (674)
+..++.+++...+. ......+...+...+ .+++.+|||||++..... ..+.+...+. .. ..+..+|+||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999999664322 233555566666666 456899999999764221 2233332222 11 34567788877
Q ss_pred ChhH--------HhhcCCCCeEeCCCCChHhhHHHHHHHhhc--CCCCCChhhHHHHHHHHHHHcC---CChHHH
Q 039885 282 KETV--------AGMMESTDVISIKELSERECWSLFERIAFF--NRPSLECEQLEEFGRKIVSKCK---GLPLAV 343 (674)
Q Consensus 282 ~~~v--------a~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~--~~~~~~~~~l~~~~~~I~~~c~---GlPLai 343 (674)
.... ...+. ...+.+.+++.++..+++...+.. ...... + +....|++.++ |.|..+
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~G~~r~~ 245 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD-P---DVVPLCAALAAREHGDARRA 245 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-S---SHHHHHHHHHHSSSCCHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-H---HHHHHHHHHHHHhccCHHHH
Confidence 6522 11111 147899999999999999887532 111111 2 23455777777 999433
No 105
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.34 E-value=4.9e-12 Score=137.15 Aligned_cols=161 Identities=16% Similarity=0.059 Sum_probs=118.4
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccC
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEK 549 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~ 549 (674)
....+++|.+++|.+..+| +.++++|+.|++++|. +.+. | +..+++|++|++ ++|.++++| ++.
T Consensus 83 ~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~--l~~l-~--~~~l~~L~~L~l-------~~N~l~~l~--l~~ 146 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK--LTKL-D--VSQNPLLTYLNC-------ARNTLTEID--VSH 146 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC--CSCC-C--CTTCTTCCEEEC-------TTSCCSCCC--CTT
T ss_pred cCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc--CCee-c--CCCCCcCCEEEC-------CCCccceec--ccc
Confidence 3467888888888887664 7788888888888887 6553 3 778888888888 888888875 788
Q ss_pred CCCCcceeecCCC-CccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhc
Q 039885 550 LIHLRFLQLRDLM-IDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVL 628 (674)
Q Consensus 550 L~~Lr~L~L~~~~-i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 628 (674)
+++|++|++++|. ++.+ .++.+++|++|++++| .+..+| ++.+++|++|++..|.++. . .+
T Consensus 147 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n--~l~~l~--l~~l~~L~~L~l~~N~l~~-------~-----~l 208 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN--KITELD--VSQNKLLNRLNCDTNNITK-------L-----DL 208 (457)
T ss_dssp CTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS--CCCCCC--CTTCTTCCEEECCSSCCSC-------C-----CC
T ss_pred CCcCCEEECCCCCccccc--ccccCCcCCEEECCCC--ccceec--cccCCCCCEEECcCCcCCe-------e-----cc
Confidence 8888888888884 6666 3778888888888888 577777 7888888888886666333 2 25
Q ss_pred cCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 629 GQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 629 ~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
..+++|+ .|.++++.-.. .+ +..+++|+.|+|+.|+
T Consensus 209 ~~l~~L~-~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 209 NQNIQLT-FLDCSSNKLTE-----ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp TTCTTCS-EEECCSSCCSC-----CC--CTTCTTCSEEECCSSC
T ss_pred ccCCCCC-EEECcCCcccc-----cC--ccccCCCCEEEeeCCc
Confidence 5566666 67776653322 12 6677888888888774
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=4.8e-12 Score=128.69 Aligned_cols=144 Identities=20% Similarity=0.244 Sum_probs=114.6
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
.+.+++|.+++|.+..++. +.++++|+.|++++|. +.. ++. +..+++|+.|++ ++|.+..+| .++.+
T Consensus 67 l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~--l~~-~~~-l~~l~~L~~L~L-------~~n~i~~~~-~l~~l 133 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK--VKD-LSS-LKDLKKLKSLSL-------EHNGISDIN-GLVHL 133 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--CCC-GGG-GTTCTTCCEEEC-------TTSCCCCCG-GGGGC
T ss_pred CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc--CCC-Chh-hccCCCCCEEEC-------CCCcCCCCh-hhcCC
Confidence 4678999999998887776 8889999999999887 655 344 888999999999 888888874 68889
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
++|++|++++|.++.+ +.++.+++|++|++++| .+..+|. +..+++|++|++..|.++. +..+..
T Consensus 134 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N--~l~~~~~-l~~l~~L~~L~L~~N~i~~-----------l~~l~~ 198 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN--QISDIVP-LAGLTKLQNLYLSKNHISD-----------LRALAG 198 (291)
T ss_dssp TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS--CCCCCGG-GTTCTTCCEEECCSSCCCB-----------CGGGTT
T ss_pred CCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC--ccccchh-hcCCCccCEEECCCCcCCC-----------Chhhcc
Confidence 9999999999998888 57888999999999988 5777766 8889999999997666433 234566
Q ss_pred cccCCCeeEEecc
Q 039885 631 LRHLRGSLRIRGL 643 (674)
Q Consensus 631 L~~L~g~L~i~~l 643 (674)
+++|+ .|.+.++
T Consensus 199 l~~L~-~L~l~~n 210 (291)
T 1h6t_A 199 LKNLD-VLELFSQ 210 (291)
T ss_dssp CTTCS-EEEEEEE
T ss_pred CCCCC-EEECcCC
Confidence 66666 6766654
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=3e-13 Score=140.67 Aligned_cols=182 Identities=12% Similarity=0.055 Sum_probs=142.9
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccc-hhHhhccCCceeEEEecccccccccccccc-ccccccC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSV-LPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIEK 549 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~~ 549 (674)
..++.+.+.+|.+...+..+..+++|+.|++++|. +... ++..+..+++|+.|+| ++|.+.. .|..+++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~~~~~~~~L~~L~L-------~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV--IEVSTLHGILSQCSKLQNLSL-------EGLRLSDPIVNTLAK 140 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE--ECHHHHHHHHTTBCCCSEEEC-------TTCBCCHHHHHHHTT
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC--cCHHHHHHHHhhCCCCCEEeC-------cCcccCHHHHHHHhc
Confidence 45777888888776666667789999999999997 6544 7888999999999999 9999885 8889999
Q ss_pred CCCCcceeecCC-CCc--cccccccCCCcccEEEeccccccccc--cccccccCc-cCCeeeeeeeCccCCCCCCCCCCC
Q 039885 550 LIHLRFLQLRDL-MID--ELPETCCELFNLQTLEIRQRGYYLRR--LPHGFGRLV-NLRHLSEFVVGITGSRNDSRSRGC 623 (674)
Q Consensus 550 L~~Lr~L~L~~~-~i~--~lP~~i~~L~~L~~L~l~~~~~~~~~--lP~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~ 623 (674)
+++|++|+|++| .++ .+|..+.++++|++|++++| ..+.. +|..+..++ +|++|++..+.+.- . ...
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~----~--~~~ 213 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC-FDFTEKHVQVAVAHVSETITQLNLSGYRKNL----Q--KSD 213 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC-TTCCHHHHHHHHHHSCTTCCEEECCSCGGGS----C--HHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC-CCcChHHHHHHHHhcccCCCEEEeCCCcccC----C--HHH
Confidence 999999999999 587 48888999999999999998 44553 788899999 99999996653101 0 122
Q ss_pred ChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecCC
Q 039885 624 KLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDKE 673 (674)
Q Consensus 624 ~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~~ 673 (674)
....+.++++|+ .|.++++..+.+ .....+.++++|+.|+|++|..
T Consensus 214 l~~~~~~~~~L~-~L~l~~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 214 LSTLVRRCPNLV-HLDLSDSVMLKN---DCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp HHHHHHHCTTCS-EEECTTCTTCCG---GGGGGGGGCTTCCEEECTTCTT
T ss_pred HHHHHhhCCCCC-EEeCCCCCcCCH---HHHHHHhCCCCCCEeeCCCCCC
Confidence 234456677888 888888654432 3334677889999999999853
No 108
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.33 E-value=2.4e-12 Score=143.79 Aligned_cols=127 Identities=18% Similarity=0.127 Sum_probs=111.2
Q ss_pred CCCceeEEEEEcCCcCCcc-ccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccccc
Q 039885 470 PKEKLRHSMLMLGFEASFP-DSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIE 548 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~ 548 (674)
.++.+++|++++|.+..++ ..+.++++|++|++++|. +.+..|..|.++++|++|+| ++|.++.+|..
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L-------s~N~l~~lp~~-- 118 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR--IRSLDFHVFLFNQDLEYLDV-------SHNRLQNISCC-- 118 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEEC-------TTSCCCEECSC--
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC--CCcCCHHHhCCCCCCCEEEC-------CCCcCCccCcc--
Confidence 4578999999999998776 588999999999999998 88877888999999999999 99999999987
Q ss_pred CCCCCcceeecCCCCcccc--ccccCCCcccEEEeccccccccccccccccCccC--CeeeeeeeCc
Q 039885 549 KLIHLRFLQLRDLMIDELP--ETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNL--RHLSEFVVGI 611 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~lP--~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L--~~L~l~~~~~ 611 (674)
.+.+|++|+|++|.++.+| ..++++++|++|++++| .+.. ..+..+++| ++|++..|.+
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n--~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA--KFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS--BCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC--cccc--CchhhhhhceeeEEEeecccc
Confidence 8999999999999998765 78999999999999999 4543 346666666 9999988765
No 109
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.33 E-value=6.9e-12 Score=136.69 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=108.7
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
...++.|.+.+|.+..++ .+..+++|+.|++++|. +.+..+ +..+++|+.|++ ++|.+..+|. ++.+
T Consensus 220 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l-------~~n~l~~~~~-~~~l 286 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ--ISNLAP--LSGLTKLTELKL-------GANQISNISP-LAGL 286 (466)
T ss_dssp CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC--CCCCGG--GTTCTTCSEEEC-------CSSCCCCCGG-GTTC
T ss_pred cCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCc--cccchh--hhcCCCCCEEEC-------CCCccCcccc-ccCC
Confidence 455677777776665554 45667777777777766 544333 667777777777 7777777665 6777
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
++|++|+|++|.++.+|+ ++.+++|+.|++++| .+..++. ++.+++|++|++..|.++. +..+.+
T Consensus 287 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n--~l~~~~~-~~~l~~L~~L~l~~n~l~~-----------~~~l~~ 351 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP-ISNLKNLTYLTLYFN--NISDISP-VSSLTKLQRLFFYNNKVSD-----------VSSLAN 351 (466)
T ss_dssp TTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS--CCSCCGG-GGGCTTCCEEECCSSCCCC-----------CGGGTT
T ss_pred CccCeEEcCCCcccCchh-hcCCCCCCEEECcCC--cCCCchh-hccCccCCEeECCCCccCC-----------chhhcc
Confidence 777777777777776665 677777777777777 3444444 6777777777775554322 135666
Q ss_pred cccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeec
Q 039885 631 LRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFD 671 (674)
Q Consensus 631 L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~ 671 (674)
+++|+ .|.+.++..... .+ +..+++|+.|+|+.|
T Consensus 352 l~~L~-~L~l~~n~l~~~----~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 352 LTNIN-WLSAGHNQISDL----TP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp CTTCC-EEECCSSCCCBC----GG--GTTCTTCCEEECCCE
T ss_pred CCCCC-EEeCCCCccCcc----ch--hhcCCCCCEEeccCC
Confidence 66777 777766543221 11 677788888888766
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=2.4e-12 Score=122.36 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=101.0
Q ss_pred eEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhH-hhccCCceeEEEeccccccccccccccc-cccccCCCC
Q 039885 475 RHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPR-LFDQLTCLRTLKIVAHDRRWSRGMIREI-PKEIEKLIH 552 (674)
Q Consensus 475 r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~~l~~l-p~~i~~L~~ 552 (674)
+.+.++++.+..+|..+.. +|+.|++++|. +....+. .|..+++|++|+| ++|.++++ |..++++.+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~L-------s~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE--LGRISSDGLFGRLPHLVKLEL-------KRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC--CCSBCCSCSGGGCTTCCEEEC-------CSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc--CCccCCccccccCCCCCEEEC-------CCCCCCCcCHhHcCCccc
Confidence 5677888888888875543 88999999887 6665543 4888999999999 99998885 778999999
Q ss_pred CcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCcc
Q 039885 553 LRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGIT 612 (674)
Q Consensus 553 Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~ 612 (674)
|++|+|++|.|+.+|.. +..+++|++|+|++| ...+..|..+..+++|++|++..|.+.
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99999999998877765 788999999999998 433444777899999999999666643
No 111
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.32 E-value=1.9e-12 Score=133.53 Aligned_cols=173 Identities=14% Similarity=0.083 Sum_probs=96.4
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhH----------------hhccCCceeEEEecccccc
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPR----------------LFDQLTCLRTLKIVAHDRR 534 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~----------------~~~~l~~Lr~L~L~~~~~~ 534 (674)
...+++|.+++|.+...++ +..+++|++|++++|. +.+..+. ....+++|+.|++
T Consensus 57 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~--l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l------ 127 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY--VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYL------ 127 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE--EEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEEC------
T ss_pred CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc--cccccCCCCcCEEECCCCccCCcCccccCCCCEEEC------
Confidence 3556666666666654443 6666677777776665 3321100 0112334444444
Q ss_pred ccccccccc-cccccCCCCCcceeecCCCCcccc-ccc-cCCCcccEEEeccccccccccccccccCccCCeeeeeeeCc
Q 039885 535 WSRGMIREI-PKEIEKLIHLRFLQLRDLMIDELP-ETC-CELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGI 611 (674)
Q Consensus 535 ~~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lP-~~i-~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~ 611 (674)
++|.++.+ |..++.+++|++|+|++|.++.++ ..+ ..+++|++|++++| .+..+|. ...+++|++|++..|.+
T Consensus 128 -~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~-~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 128 -ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN--FIYDVKG-QVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp -CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS--CCCEEEC-CCCCTTCCEEECCSSCC
T ss_pred -CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC--cCccccc-ccccccCCEEECCCCcC
Confidence 55555553 335566666666666666666543 333 35666666666666 4555543 33466677777655553
Q ss_pred cCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 612 TGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 612 ~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+. . +..+..+++|+ .|.++++.-. ..+..+..+++|+.|+|+.|+
T Consensus 204 ~~-------l---~~~~~~l~~L~-~L~L~~N~l~-----~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 204 AF-------M---GPEFQSAAGVT-WISLRNNKLV-----LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CE-------E---CGGGGGGTTCS-EEECTTSCCC-----EECTTCCCCTTCCEEECTTCC
T ss_pred Cc-------c---hhhhcccCccc-EEECcCCccc-----chhhHhhcCCCCCEEEccCCC
Confidence 32 2 22355566666 6777664322 134456777888888888774
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=2.9e-12 Score=134.72 Aligned_cols=174 Identities=18% Similarity=0.102 Sum_probs=129.2
Q ss_pred eEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhc-cCCceeEEEecccccccccccccccc-ccccCCCC
Q 039885 475 RHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFD-QLTCLRTLKIVAHDRRWSRGMIREIP-KEIEKLIH 552 (674)
Q Consensus 475 r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L~~ 552 (674)
+.+...++.+..+|..+. +.++.|++++|. +....+..|. ++++|+.|+| ++|.+..+| ..+.++.+
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L-------~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLL-------SHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC--CCEECTTSSSSCCTTCCEEEC-------CSSCCCEECTTTTTTCTT
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC--CCccChhhhhhcccccCEEEC-------CCCcCCccChhhccCCCC
Confidence 567888888888887554 468999999998 7777777777 9999999999 999999976 56999999
Q ss_pred CcceeecCCCCccccc-cccCCCcccEEEecccccccccc-ccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 553 LRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLRRL-PHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 553 Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
|++|+|++|.++.+|. .+..+.+|++|+|++| .+..+ |..|..+++|++|++..|.++. . ....+..+..
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~~~~l~~L~~L~L~~N~l~~----l--~~~~~~~~~~ 161 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN--HIVVVDRNAFEDMAQLQKLYLSQNQISR----F--PVELIKDGNK 161 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCS----C--CGGGTC----
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC--cccEECHHHhCCcccCCEEECCCCcCCe----e--CHHHhcCccc
Confidence 9999999999998877 5799999999999999 56666 6679999999999998777544 1 2222333356
Q ss_pred cccCCCeeEEeccCCCCChhhhhhccCCccCC--CCeEEEeecC
Q 039885 631 LRHLRGSLRIRGLGNVKDVDEAKSAGLENKMN--LLHLGLGFDK 672 (674)
Q Consensus 631 L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~--L~~L~L~~~~ 672 (674)
+.+|+ .|+++++.... ... ..+..++. |+.|+|+.|+
T Consensus 162 l~~L~-~L~L~~N~l~~-l~~---~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 162 LPKLM-LLDLSSNKLKK-LPL---TDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CTTCC-EEECCSSCCCC-CCH---HHHHHSCHHHHTTEECCSSC
T ss_pred CCcCC-EEECCCCCCCc-cCH---HHhhhccHhhcceEEecCCC
Confidence 77777 78777654322 211 12333333 4678877664
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=1.9e-12 Score=120.19 Aligned_cols=131 Identities=19% Similarity=0.191 Sum_probs=100.6
Q ss_pred CCCCceEEEecCCCcccc-cchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCcc-ccccc
Q 039885 493 NAKKLRSFLISSPYDVFS-SVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDE-LPETC 570 (674)
Q Consensus 493 ~l~~L~~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~-lP~~i 570 (674)
..++|+.|++++|. +. +.+|..+..+++|++|++ ++|.+..+ ..++.+++|++|+|++|.++. +|..+
T Consensus 22 ~~~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l-------~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSL-------INVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEE-------ESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeC-------cCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 45789999999987 65 446777888999999999 88888888 788899999999999999887 77777
Q ss_pred cCCCcccEEEeccccccccccc--cccccCccCCeeeeeeeCccCCCCCCCCCCC-ChhhccCcccCCCeeEEecc
Q 039885 571 CELFNLQTLEIRQRGYYLRRLP--HGFGRLVNLRHLSEFVVGITGSRNDSRSRGC-KLEVLGQLRHLRGSLRIRGL 643 (674)
Q Consensus 571 ~~L~~L~~L~l~~~~~~~~~lP--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~~L~g~L~i~~l 643 (674)
+++++|++|++++| .+..+| ..+..+++|++|++..|.++. .+. ....+..+++|+ .|.+.++
T Consensus 92 ~~l~~L~~L~Ls~N--~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-------~~~~~~~~~~~l~~L~-~L~l~~n 157 (168)
T 2ell_A 92 EKLPNLTHLNLSGN--KLKDISTLEPLKKLECLKSLDLFNCEVTN-------LNDYRESVFKLLPQLT-YLDGYDR 157 (168)
T ss_dssp HHCTTCCEEECBSS--SCCSSGGGGGGSSCSCCCEEECCSSGGGT-------STTHHHHHHTTCSSCC-EETTEET
T ss_pred hhCCCCCEEeccCC--ccCcchhHHHHhcCCCCCEEEeeCCcCcc-------hHHHHHHHHHhCccCc-EecCCCC
Confidence 78999999999998 677776 678999999999997776444 222 112445555555 5655554
No 114
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=144.06 Aligned_cols=178 Identities=15% Similarity=0.107 Sum_probs=131.3
Q ss_pred CCCceeEEEEEcCCcCCc---cccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc--
Q 039885 470 PKEKLRHSMLMLGFEASF---PDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-- 544 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~---p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-- 544 (674)
..+.++.+.+++|.+... |..+..+++|+.|++++|. +....+. +..+++|+.|++ ++|.+...+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~-~~~l~~L~~L~l-------~~n~l~~~~~~ 414 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG--VITMSSN-FLGLEQLEHLDF-------QHSNLKQMSEF 414 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS--EEEEEEE-EETCTTCCEEEC-------TTSEEESCTTS
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc--ccccccc-ccccCCCCEEEc-------cCCccccccch
Confidence 345677788877776543 5667788888888888887 6554444 888888888888 888887743
Q ss_pred ccccCCCCCcceeecCCCCcc-ccccccCCCcccEEEeccccccc-cccccccccCccCCeeeeeeeCccCCCCCCCCCC
Q 039885 545 KEIEKLIHLRFLQLRDLMIDE-LPETCCELFNLQTLEIRQRGYYL-RRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRG 622 (674)
Q Consensus 545 ~~i~~L~~Lr~L~L~~~~i~~-lP~~i~~L~~L~~L~l~~~~~~~-~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 622 (674)
..+.++++|++|++++|.+.. .|..++.+++|++|++++| ... +.+|..+..+++|++|++..|.++.
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~--------- 484 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQ--------- 484 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCE---------
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCcccc---------
Confidence 468889999999999998764 5667888999999999998 433 4689889999999999997666333
Q ss_pred CChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 623 CKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 623 ~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
..+..+.++++|+ .|.++++.-.. ..+..+.++++|+.|+|+.|+
T Consensus 485 ~~~~~~~~l~~L~-~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 485 LSPTAFNSLSSLQ-VLNMASNQLKS----VPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECTTTTTTCTTCC-EEECCSSCCSC----CCTTTTTTCTTCCEEECCSSC
T ss_pred CChhhhhcccCCC-EEeCCCCcCCC----CCHHHhhcccCCcEEEecCCc
Confidence 2234456667777 78787653221 123457788999999998875
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=7.9e-13 Score=120.10 Aligned_cols=108 Identities=21% Similarity=0.274 Sum_probs=87.2
Q ss_pred CCCceEEEecCCCcccc-cchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCcc-cccccc
Q 039885 494 AKKLRSFLISSPYDVFS-SVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDE-LPETCC 571 (674)
Q Consensus 494 l~~L~~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~-lP~~i~ 571 (674)
.++|+.|++++|. +. +.+|..+..+++|++|++ ++|.+..+ ..++.+++|++|+|++|.++. +|..++
T Consensus 16 ~~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l-------~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLST-------INVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEEC-------TTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred CccCeEEEccCCc--CChhHHHHHHhhcCCCcEEEC-------cCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 4678888888887 65 456777788889999999 88888887 678888899999999998886 777778
Q ss_pred CCCcccEEEeccccccccccc--cccccCccCCeeeeeeeCccC
Q 039885 572 ELFNLQTLEIRQRGYYLRRLP--HGFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 572 ~L~~L~~L~l~~~~~~~~~lP--~~i~~L~~L~~L~l~~~~~~~ 613 (674)
.+++|++|++++| .+..+| ..++.+++|++|++..|.++.
T Consensus 86 ~l~~L~~L~ls~N--~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 86 KCPNLTHLNLSGN--KIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp HCTTCCEEECTTS--CCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred hCCCCCEEECCCC--cCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 8889999999988 566665 778888899999887666444
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.30 E-value=4.9e-12 Score=139.88 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=119.0
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
.+.++.|++++|.+..+| ..+++|+.|++++|. +.+ +|. +.+ +|++|+| ++|.++++|. .+
T Consensus 79 ~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~--l~~-ip~-l~~--~L~~L~L-------s~N~l~~lp~---~l 139 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP---ELPASLEYLDACDNR--LST-LPE-LPA--SLKHLDV-------DNNQLTMLPE---LP 139 (571)
T ss_dssp CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC--CSC-CCC-CCT--TCCEEEC-------CSSCCSCCCC---CC
T ss_pred cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC--CCC-cch-hhc--CCCEEEC-------CCCcCCCCCC---cC
Confidence 467899999999988888 457899999999987 666 455 554 8999999 9999988887 68
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
++|++|+|++|.|+.+|. .+++|++|+|++| .+..+|. |. ++|++|++..|.++. .+. +.. +
T Consensus 140 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N--~L~~lp~-l~--~~L~~L~Ls~N~L~~-------lp~-~~~--~ 201 (571)
T 3cvr_A 140 ALLEYINADNNQLTMLPE---LPTSLEVLSVRNN--QLTFLPE-LP--ESLEALDVSTNLLES-------LPA-VPV--R 201 (571)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSS--CCSCCCC-CC--TTCCEEECCSSCCSS-------CCC-CC----
T ss_pred ccccEEeCCCCccCcCCC---cCCCcCEEECCCC--CCCCcch-hh--CCCCEEECcCCCCCc-------hhh-HHH--h
Confidence 899999999999998887 6788999999998 5777888 66 899999997777554 333 221 2
Q ss_pred c----ccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 631 L----RHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 631 L----~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
| ..|+ .|.++++.-. .++..+.++++|+.|+|+.|+
T Consensus 202 L~~~~~~L~-~L~Ls~N~l~-----~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 202 NHHSEETEI-FFRCRENRIT-----HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ------CCE-EEECCSSCCC-----CCCGGGGGSCTTEEEECCSSS
T ss_pred hhcccccce-EEecCCCcce-----ecCHHHhcCCCCCEEEeeCCc
Confidence 2 1125 5666654322 234456668889999998885
No 117
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.29 E-value=4.7e-13 Score=138.07 Aligned_cols=148 Identities=12% Similarity=0.069 Sum_probs=86.4
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccc-cccc-cC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREI-PKEI-EK 549 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~l-p~~i-~~ 549 (674)
+.++++.+.+|.+..++. ..+++|+.|++++|. +....+..+..+++|++|+| ++|.+..+ |..+ +.
T Consensus 99 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~L-------s~N~l~~~~~~~~~~~ 167 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDL-------KLNEIDTVNFAELAAS 167 (317)
T ss_dssp TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSC--CCSGGGBCTGGGSSEEEEEC-------TTSCCCEEEGGGGGGG
T ss_pred CCcCEEECCCCccCCcCc--cccCCCCEEECCCCC--CCCccchhhhccCCCCEEEC-------CCCCCCcccHHHHhhc
Confidence 445555555555544432 235566666666666 55545555666667777777 66666663 3444 35
Q ss_pred CCCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhcc
Q 039885 550 LIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLG 629 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 629 (674)
+++|++|+|++|.++.+|.. ..+++|++|++++| .+..+|..+..+++|++|++..|.++. . +..+.
T Consensus 168 l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~L~~N~l~~-------l---~~~~~ 234 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVL-------I---EKALR 234 (317)
T ss_dssp TTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCE-------E---CTTCC
T ss_pred cCcCCEEECCCCcCcccccc-cccccCCEEECCCC--cCCcchhhhcccCcccEEECcCCcccc-------h---hhHhh
Confidence 66677777777776666543 34666777777766 466666666667777777765554322 2 22344
Q ss_pred CcccCCCeeEEeccC
Q 039885 630 QLRHLRGSLRIRGLG 644 (674)
Q Consensus 630 ~L~~L~g~L~i~~l~ 644 (674)
.+++|+ .|.++++.
T Consensus 235 ~l~~L~-~L~l~~N~ 248 (317)
T 3o53_A 235 FSQNLE-HFDLRGNG 248 (317)
T ss_dssp CCTTCC-EEECTTCC
T ss_pred cCCCCC-EEEccCCC
Confidence 455555 56555543
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.28 E-value=1.4e-10 Score=112.47 Aligned_cols=186 Identities=14% Similarity=0.072 Sum_probs=119.9
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFG-KRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 215 (674)
.+++|++..++.+.+++.... .+.+.|+|++|+|||+||+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 469999999999999997542 23389999999999999999987421 11222 23344444433333222211
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhH-Hh-hcCCCC
Q 039885 216 IEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETV-AG-MMESTD 293 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v-a~-~~~~~~ 293 (674)
..+.... ....+++.+||+||++.......+.+...+.....+.++|+||+.... .. ......
T Consensus 90 -~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 -KEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp -HHHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred -HHHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 1111100 001357899999999887666677777777665667888888876531 11 112234
Q ss_pred eEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 294 VISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 294 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
.+++.+++.++..+++.+.+...+.... .+....|++.++|.|..+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999999887653332211 23456688999999997665543
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=4e-13 Score=142.67 Aligned_cols=183 Identities=19% Similarity=0.170 Sum_probs=132.8
Q ss_pred CCceeEEEEEcCCcCC-----ccccccCCCCceEEEecCCCcccccc----hhHhhccC---------CceeEEEecccc
Q 039885 471 KEKLRHSMLMLGFEAS-----FPDSLLNAKKLRSFLISSPYDVFSSV----LPRLFDQL---------TCLRTLKIVAHD 532 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~l---------~~Lr~L~L~~~~ 532 (674)
.+.+++|.+++|.+.. +|..+..+++|++|++++|. +... ++..+..+ ++|++|+|
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L---- 166 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG--LGPQAGAKIARALQELAVNKKAKNAPPLRSIIC---- 166 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC----
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC--CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC----
Confidence 4678899999988765 67778889999999999987 5432 33334444 89999999
Q ss_pred ccccccccc--ccc---ccccCCCCCcceeecCCCCc------cccccccCCCcccEEEeccccccc-----cccccccc
Q 039885 533 RRWSRGMIR--EIP---KEIEKLIHLRFLQLRDLMID------ELPETCCELFNLQTLEIRQRGYYL-----RRLPHGFG 596 (674)
Q Consensus 533 ~~~~~~~l~--~lp---~~i~~L~~Lr~L~L~~~~i~------~lP~~i~~L~~L~~L~l~~~~~~~-----~~lP~~i~ 596 (674)
++|.+. .+| ..+..+++|++|+|++|.++ -+|..+..+++|++|+|++| .+ ..+|..+.
T Consensus 167 ---~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 167 ---GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIALK 241 (386)
T ss_dssp ---CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHGG
T ss_pred ---CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHHc
Confidence 888886 355 57778899999999999987 34558889999999999999 35 67888899
Q ss_pred cCccCCeeeeeeeCccCCCCCCCCCCC--Chhhc--cCcccCCCeeEEeccCCCCChhhhhhccC-CccCCCCeEEEeec
Q 039885 597 RLVNLRHLSEFVVGITGSRNDSRSRGC--KLEVL--GQLRHLRGSLRIRGLGNVKDVDEAKSAGL-ENKMNLLHLGLGFD 671 (674)
Q Consensus 597 ~L~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~L--~~L~~L~g~L~i~~l~~~~~~~~~~~~~L-~~~~~L~~L~L~~~ 671 (674)
.+++|++|++..|.++. .+. ....| ..+++|+ .|.++++..........+..+ .++++|+.|+|++|
T Consensus 242 ~~~~L~~L~L~~n~i~~-------~~~~~l~~~l~~~~~~~L~-~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSA-------RGAAAVVDAFSKLENIGLQ-TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp GCTTCCEEECTTCCCCH-------HHHHHHHHHHHTCSSCCCC-EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred cCCCcCEEECCCCCCch-------hhHHHHHHHHhhccCCCeE-EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 99999999997666333 111 12344 3377777 788877543221111344445 55789999999887
Q ss_pred C
Q 039885 672 K 672 (674)
Q Consensus 672 ~ 672 (674)
+
T Consensus 314 ~ 314 (386)
T 2ca6_A 314 R 314 (386)
T ss_dssp B
T ss_pred c
Confidence 5
No 120
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=2.7e-11 Score=128.25 Aligned_cols=205 Identities=14% Similarity=0.192 Sum_probs=129.4
Q ss_pred ccCceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccccc---ceEEEEEeCCCCCHHHH
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHF---GKRIWVCVSDPFDEYRI 211 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~ 211 (674)
.+..|+||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 346799999999999998874211 124567999999999999999999874 22222 24567877766677788
Q ss_pred HHHHHHHhhCCCC-CcccHHHHHHHHHHHcC--CCeEEEEEeCCCCCC----hhhHHHHHHhhcC-CCCCcEEEEEcCCh
Q 039885 212 AKAIIEALEGSAT-NLVELNALLLRINESIA--REKFLLVLDDVWTED----YNKWESFRRCLIN-GQRGSKILVTTRKE 283 (674)
Q Consensus 212 ~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~IivTtR~~ 283 (674)
+..++.+++.... ...+.......+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 8888877754322 12234455555555553 458999999996521 2334444444422 23355677787765
Q ss_pred hHHhhcCC-------CCeEeCCCCChHhhHHHHHHHhhcCC-CCCChhhHHHHHHHHHHHcC---CChHHHHHH
Q 039885 284 TVAGMMES-------TDVISIKELSERECWSLFERIAFFNR-PSLECEQLEEFGRKIVSKCK---GLPLAVKTI 346 (674)
Q Consensus 284 ~va~~~~~-------~~~~~l~~L~~~~~~~Lf~~~a~~~~-~~~~~~~l~~~~~~I~~~c~---GlPLai~~~ 346 (674)
.....+.. ...+.+.+++.++..+++...+.... ..... .+....|++.++ |.|..+..+
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~l 244 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDL 244 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHH
Confidence 43222211 14799999999999999987653111 11111 234455666666 999854443
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.27 E-value=1.3e-11 Score=138.06 Aligned_cols=119 Identities=22% Similarity=0.175 Sum_probs=93.7
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccC
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEK 549 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~ 549 (674)
.++.++.|.+++|.+..+|. .+++|++|++++|. +.. +|. .+++|++|+| ++|.++.+|. .
T Consensus 59 l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~--l~~-lp~---~l~~L~~L~L-------s~N~l~~l~~---~ 119 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ--LTS-LPV---LPPGLLELSI-------FSNPLTHLPA---L 119 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC--CSC-CCC---CCTTCCEEEE-------CSCCCCCCCC---C
T ss_pred hCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc--CCc-CCC---CCCCCCEEEC-------cCCcCCCCCC---C
Confidence 34789999999999988886 57899999999998 665 343 7789999999 9999999887 6
Q ss_pred CCCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccC-----------------ccCCeeeeeeeCcc
Q 039885 550 LIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRL-----------------VNLRHLSEFVVGIT 612 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L-----------------~~L~~L~l~~~~~~ 612 (674)
+.+|++|++++|.++.+|.. +++|++|++++| .+..+|..+.+| ++|++|++..|.++
T Consensus 120 l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N--~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN--QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA 194 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS--CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC--cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC
Confidence 78899999999999999875 478999999998 566776544332 55666666555533
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.26 E-value=2.5e-11 Score=135.84 Aligned_cols=117 Identities=23% Similarity=0.166 Sum_probs=90.9
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccC
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEK 549 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~ 549 (674)
..++++.|++++|.+..+|. .+++|+.|++++|. +..+ |. .+++|+.|++ ++|.++.+|..
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~--l~~l-~~---~l~~L~~L~L-------~~N~l~~lp~~--- 139 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP--LTHL-PA---LPSGLCKLWI-------FGNQLTSLPVL--- 139 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC--CCCC-CC---CCTTCCEEEC-------CSSCCSCCCCC---
T ss_pred cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc--CCCC-CC---CCCCcCEEEC-------CCCCCCcCCCC---
Confidence 56789999999999988886 78999999999998 6553 33 5678999999 89988888874
Q ss_pred CCCCcceeecCCCCccccccccCC-----------------CcccEEEeccccccccccccccccCccCCeeeeeeeC
Q 039885 550 LIHLRFLQLRDLMIDELPETCCEL-----------------FNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~~i~~L-----------------~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 610 (674)
+++|++|+|++|.++.+|..+.+| ++|++|++++| .+..+|..+ ++|+.|++..|.
T Consensus 140 l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N--~l~~l~~~~---~~L~~L~L~~N~ 212 (622)
T 3g06_A 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN--QLASLPTLP---SELYKLWAYNNR 212 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS--CCSCCCCCC---TTCCEEECCSSC
T ss_pred CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC--CCCCCCCcc---chhhEEECcCCc
Confidence 478888888888888776644433 77899999998 577787643 556666665444
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.26 E-value=8.2e-12 Score=116.93 Aligned_cols=125 Identities=24% Similarity=0.335 Sum_probs=104.6
Q ss_pred eeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccc-ccCCCC
Q 039885 474 LRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE-IEKLIH 552 (674)
Q Consensus 474 ~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~-i~~L~~ 552 (674)
.+.+.+..+.+..+|..+ .++|+.|++++|. +....+..|..+++|++|+| ++|.++.+|.. ++.+.+
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l-------~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNK--LQSLPHGVFDKLTQLTKLSL-------SQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEEC-------CSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCc--ccEeCHHHhcCcccccEEEC-------CCCcceEeChhHccCCCc
Confidence 356777777777777544 3789999999988 77767777899999999999 99999997754 689999
Q ss_pred CcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeCc
Q 039885 553 LRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGI 611 (674)
Q Consensus 553 Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~ 611 (674)
|++|+|++|.++.+|.. ++.+++|++|++++| .+..+|.. +..+++|++|++..|.+
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTN--QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCC--cceEeCHHHhcCCcccCEEEecCCCe
Confidence 99999999999988876 689999999999999 67788876 58899999999976663
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.2e-11 Score=117.61 Aligned_cols=122 Identities=17% Similarity=0.232 Sum_probs=96.2
Q ss_pred eEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccCCCCC
Q 039885 475 RHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEKLIHL 553 (674)
Q Consensus 475 r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L~~L 553 (674)
+.+.++++.+..+|..+. ++|+.|++++|. +.. +|..|..+++|+.|+| ++|.++.+| ..|.+|.+|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~--i~~-ip~~~~~l~~L~~L~L-------s~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ--FTL-VPKELSNYKHLTLIDL-------SNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC--CCS-CCGGGGGCTTCCEEEC-------CSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc--Cch-hHHHhhcccCCCEEEC-------CCCcCCEeCHhHccCCCCC
Confidence 456677777777776543 578888888887 654 4567888888999999 888888865 568888899
Q ss_pred cceeecCCCCccccc-cccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeC
Q 039885 554 RFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVG 610 (674)
Q Consensus 554 r~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~ 610 (674)
++|+|++|.|+.+|+ .++.+++|++|+|++| .+..+|.. |..+++|++|++..|.
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN--DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSS--CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCC--CCCeeChhhhhcCccccEEEeCCCC
Confidence 999999888887775 5888888999999888 57777765 7888888888886555
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=7.7e-12 Score=138.90 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=80.0
Q ss_pred eeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCC
Q 039885 474 LRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHL 553 (674)
Q Consensus 474 ~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~L 553 (674)
++.|.+++|.+..+|. +..+++|+.|++++|. +.. +|..|+++++|++|+| ++|.++++| .+++|++|
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~--l~~-lp~~~~~l~~L~~L~L-------s~N~l~~lp-~l~~l~~L 510 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR--LRA-LPPALAALRCLEVLQA-------SDNALENVD-GVANLPRL 510 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC--CCC-CCGGGGGCTTCCEEEC-------CSSCCCCCG-GGTTCSSC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCccc--ccc-cchhhhcCCCCCEEEC-------CCCCCCCCc-ccCCCCCC
Confidence 5667777777766665 6777777777777776 553 4556777777777777 777777776 67777777
Q ss_pred cceeecCCCCccc--cccccCCCcccEEEecccccccccccccc----ccCccCCeee
Q 039885 554 RFLQLRDLMIDEL--PETCCELFNLQTLEIRQRGYYLRRLPHGF----GRLVNLRHLS 605 (674)
Q Consensus 554 r~L~L~~~~i~~l--P~~i~~L~~L~~L~l~~~~~~~~~lP~~i----~~L~~L~~L~ 605 (674)
++|+|++|.|+.+ |..++.|++|++|+|++| .+..+|+.+ ..+++|+.|+
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N--~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN--SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS--GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC--cCCCCccHHHHHHHHCcccCccC
Confidence 7777777777766 667777777777777777 455555443 2356666664
No 126
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=1.6e-11 Score=137.23 Aligned_cols=144 Identities=20% Similarity=0.241 Sum_probs=101.8
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
.+.++.|.++.|.+..+|. +..+++|+.|++++|. +.. +| .+..+++|+.|+| ++|.+..+| .++.|
T Consensus 64 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--l~~-l~-~l~~l~~L~~L~L-------s~N~l~~l~-~l~~l 130 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK--IKD-LS-SLKDLKKLKSLSL-------EHNGISDIN-GLVHL 130 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--CCC-CT-TSTTCTTCCEEEC-------TTSCCCCCG-GGGGC
T ss_pred CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC--CCC-Ch-hhccCCCCCEEEe-------cCCCCCCCc-cccCC
Confidence 4677888888887776665 7778888888888876 554 33 4777888888888 777777764 47778
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQ 630 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 630 (674)
++|++|+|++|.++.+ +.++.|++|+.|+|++| .+..+|. +..|++|++|++..|.++. +..+..
T Consensus 131 ~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N--~l~~~~~-l~~l~~L~~L~Ls~N~i~~-----------l~~l~~ 195 (605)
T 1m9s_A 131 PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN--QISDIVP-LAGLTKLQNLYLSKNHISD-----------LRALAG 195 (605)
T ss_dssp TTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS--CCCCCGG-GTTCTTCCEEECCSSCCCB-----------CGGGTT
T ss_pred CccCEEECCCCccCCc-hhhcccCCCCEEECcCC--cCCCchh-hccCCCCCEEECcCCCCCC-----------ChHHcc
Confidence 8888888888887777 46778888888888887 4556655 7778888888886655322 134555
Q ss_pred cccCCCeeEEecc
Q 039885 631 LRHLRGSLRIRGL 643 (674)
Q Consensus 631 L~~L~g~L~i~~l 643 (674)
|++|+ .|.+.++
T Consensus 196 l~~L~-~L~L~~N 207 (605)
T 1m9s_A 196 LKNLD-VLELFSQ 207 (605)
T ss_dssp CTTCS-EEECCSE
T ss_pred CCCCC-EEEccCC
Confidence 56666 5655543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=8.9e-12 Score=116.58 Aligned_cols=111 Identities=20% Similarity=0.173 Sum_probs=95.3
Q ss_pred cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCcccccc
Q 039885 490 SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPET 569 (674)
Q Consensus 490 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~ 569 (674)
.+.++.+|+.|++++|. +.. +|......++|++|++ ++|.++.+ +.++.+++|++|+|++|.++.+|+.
T Consensus 14 ~~~~~~~L~~L~l~~n~--l~~-i~~~~~~~~~L~~L~L-------s~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK--IPV-IENLGATLDQFDAIDF-------SDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp EEECTTSCEEEECTTSC--CCS-CCCGGGGTTCCSEEEC-------CSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred hcCCcCCceEEEeeCCC--Cch-hHHhhhcCCCCCEEEC-------CCCCCCcc-cccccCCCCCEEECCCCcccccCcc
Confidence 45678999999999998 665 3553344449999999 99999988 6899999999999999999999977
Q ss_pred c-cCCCcccEEEecccccccccccc--ccccCccCCeeeeeeeCccC
Q 039885 570 C-CELFNLQTLEIRQRGYYLRRLPH--GFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 570 i-~~L~~L~~L~l~~~~~~~~~lP~--~i~~L~~L~~L~l~~~~~~~ 613 (674)
+ +.+++|++|++++| .++.+|. .+..+++|++|++..|.+..
T Consensus 83 ~~~~l~~L~~L~L~~N--~i~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 83 LDQALPDLTELILTNN--SLVELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp HHHHCTTCCEEECCSC--CCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred hhhcCCCCCEEECCCC--cCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 6 99999999999999 6888997 79999999999998777544
No 128
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=1.4e-11 Score=134.68 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=44.6
Q ss_pred CCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-cccccc-CCCCCcceeecCCCCccccccccC
Q 039885 495 KKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-IPKEIE-KLIHLRFLQLRDLMIDELPETCCE 572 (674)
Q Consensus 495 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~-~L~~Lr~L~L~~~~i~~lP~~i~~ 572 (674)
++|+.|++++|. +.+..|..|.++++|++|+| ++|.+.+ .|..++ .+++|++|+|++|.++.+|. ...
T Consensus 120 ~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L-------s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~ 189 (487)
T 3oja_A 120 QGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDL-------KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVV 189 (487)
T ss_dssp SSCEEEECCSSC--CCSGGGBCGGGGSSEEEEEC-------TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCC
T ss_pred CCCCEEECCCCC--CCCCCchhhcCCCCCCEEEC-------CCCCCCCcChHHHhhhCCcccEEecCCCccccccc-ccc
Confidence 444444444444 33333334444444444444 4444444 333333 34444444444444444432 223
Q ss_pred CCcccEEEeccccccccccccccccCccCCeeeeee
Q 039885 573 LFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFV 608 (674)
Q Consensus 573 L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~ 608 (674)
+++|++|+|++| .+..+|..++.+++|++|++..
T Consensus 190 l~~L~~L~Ls~N--~l~~~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 190 FAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp CTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTT
T ss_pred CCCCCEEECCCC--CCCCCCHhHcCCCCccEEEecC
Confidence 444444444444 3444444444444444444433
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.22 E-value=5.7e-11 Score=128.61 Aligned_cols=117 Identities=17% Similarity=0.268 Sum_probs=56.7
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKL 550 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L 550 (674)
++.++++.+++|.+..+|.. +++|+.|++++|. +.+ +|. ..++|++|++ ++|.++++| .++++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~--l~~-l~~---~~~~L~~L~L-------~~n~l~~lp-~~~~l 152 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN--LKA-LSD---LPPLLEYLGV-------SNNQLEKLP-ELQNS 152 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC--CSC-CCS---CCTTCCEEEC-------CSSCCSSCC-CCTTC
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc--cCc-ccC---CCCCCCEEEC-------cCCCCCCCc-ccCCC
Confidence 34556666666555555432 2455555555554 322 111 0134555555 555555555 35555
Q ss_pred CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeC
Q 039885 551 IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 610 (674)
++|++|++++|.++.+|..+ .+|++|++++| .+..+| .++++++|++|++..|.
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n--~l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN--QLEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCC---TTCCEEECCSS--CCSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCcccCCCc---ccccEEECcCC--cCCcCc-cccCCCCCCEEECCCCc
Confidence 55555555555555555432 24555555555 344444 35555555555554333
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=1.3e-11 Score=137.01 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=81.9
Q ss_pred CceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCccccccccCCCc
Q 039885 496 KLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPETCCELFN 575 (674)
Q Consensus 496 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~ 575 (674)
.|+.|++++|. +.+ +|. |..+++|+.|+| ++|.++.+|..|++|++|++|+|++|.|+.+| .+++|++
T Consensus 442 ~L~~L~Ls~n~--l~~-lp~-~~~l~~L~~L~L-------s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHLAHKD--LTV-LCH-LEQLLLVTHLDL-------SHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPR 509 (567)
T ss_dssp TCSEEECTTSC--CSS-CCC-GGGGTTCCEEEC-------CSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSS
T ss_pred CceEEEecCCC--CCC-CcC-ccccccCcEeec-------CcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCC
Confidence 47788888887 655 455 788888888888 88888888888888888888888888888887 7888888
Q ss_pred ccEEEecccccccccc--ccccccCccCCeeeeeeeCccC
Q 039885 576 LQTLEIRQRGYYLRRL--PHGFGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 576 L~~L~l~~~~~~~~~l--P~~i~~L~~L~~L~l~~~~~~~ 613 (674)
|++|+|++| .+..+ |..++.|++|++|++..|.++.
T Consensus 510 L~~L~Ls~N--~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 510 LQELLLCNN--RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCEEECCSS--CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CcEEECCCC--CCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 888888888 56666 7788888888888886666544
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.21 E-value=3.5e-12 Score=135.42 Aligned_cols=185 Identities=19% Similarity=0.194 Sum_probs=133.3
Q ss_pred CCceeEEEEEcCCcC----Cccccc-------cCCCCceEEEecCCCccccc----chhHhhccCCceeEEEeccccccc
Q 039885 471 KEKLRHSMLMLGFEA----SFPDSL-------LNAKKLRSFLISSPYDVFSS----VLPRLFDQLTCLRTLKIVAHDRRW 535 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~----~~p~~~-------~~l~~L~~L~l~~~~~~~~~----~~~~~~~~l~~Lr~L~L~~~~~~~ 535 (674)
.+.+++|.++++... .+|..+ ..+++|++|++++|. +.. .+|..+..+++|++|+|
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L------- 129 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA--FGPTAQEPLIDFLSKHTPLEHLYL------- 129 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC--CCTTTHHHHHHHHHHCTTCCEEEC-------
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc--CCHHHHHHHHHHHHhCCCCCEEEC-------
Confidence 467889999887554 234333 688999999999988 655 46778899999999999
Q ss_pred ccccccc-----ccccccCC---------CCCcceeecCCCCc--ccc---ccccCCCcccEEEecccccccc------c
Q 039885 536 SRGMIRE-----IPKEIEKL---------IHLRFLQLRDLMID--ELP---ETCCELFNLQTLEIRQRGYYLR------R 590 (674)
Q Consensus 536 ~~~~l~~-----lp~~i~~L---------~~Lr~L~L~~~~i~--~lP---~~i~~L~~L~~L~l~~~~~~~~------~ 590 (674)
++|.+.. ++..+..+ ++|++|+|++|.++ .+| ..+..+++|++|++++| .+. -
T Consensus 130 ~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~g~~~l 207 (386)
T 2ca6_A 130 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN--GIRPEGIEHL 207 (386)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS--CCCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC--CCCHhHHHHH
Confidence 8888764 34445455 89999999999986 566 57788999999999999 454 3
Q ss_pred cccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccC--CccCCCCeEEE
Q 039885 591 LPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGL--ENKMNLLHLGL 668 (674)
Q Consensus 591 lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L--~~~~~L~~L~L 668 (674)
+|..+.++++|++|++..|.++. . .....+..+..+++|+ .|.++++........+.+..| ..+++|+.|+|
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~----~-g~~~l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTH----L-GSSALAIALKSWPNLR-ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHH----H-HHHHHHHHGGGCTTCC-EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred HHHHhhcCCCccEEECcCCCCCc----H-HHHHHHHHHccCCCcC-EEECCCCCCchhhHHHHHHHHhhccCCCeEEEEC
Confidence 45588999999999997666422 0 0022344567778888 888887653221122334445 44889999999
Q ss_pred eecC
Q 039885 669 GFDK 672 (674)
Q Consensus 669 ~~~~ 672 (674)
++|+
T Consensus 282 ~~n~ 285 (386)
T 2ca6_A 282 QYNE 285 (386)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 9885
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.20 E-value=5.2e-12 Score=136.83 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=57.5
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCce-------------eEEEeccccccccc
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCL-------------RTLKIVAHDRRWSR 537 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L-------------r~L~L~~~~~~~~~ 537 (674)
...++.+.+++|.++.+|..++++++|+.|++++|. +.+.+|..++++++| +.|++ ++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~--~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l-------~~ 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE--WERNAPPGNGEQREMAVSRLRDCLDRQAHELEL-------NN 80 (454)
T ss_dssp ------------------------CCHHHHHHHHHH--HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEEC-------TT
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc--ccccCCcccccchhcchhhhhhhhccCCCEEEe-------cC
Confidence 356777888888777788778888888888777766 555556556555543 55555 45
Q ss_pred ccccccccccc-----------------CCCCCcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCcc
Q 039885 538 GMIREIPKEIE-----------------KLIHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVN 600 (674)
Q Consensus 538 ~~l~~lp~~i~-----------------~L~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~ 600 (674)
|.++++|.... .+.+|++|++++|.++.+|.. .++|++|++++| .+..+| .++++++
T Consensus 81 ~~l~~lp~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n--~l~~lp-~~~~l~~ 154 (454)
T 1jl5_A 81 LGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN--QLEKLP-ELQNSSF 154 (454)
T ss_dssp SCCSCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS--CCSSCC-CCTTCTT
T ss_pred CccccCCCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCC--CCCCCc-ccCCCCC
Confidence 54444443110 113444444444444433321 146777777777 455677 4777777
Q ss_pred CCeeeeeeeCc
Q 039885 601 LRHLSEFVVGI 611 (674)
Q Consensus 601 L~~L~l~~~~~ 611 (674)
|++|++..|.+
T Consensus 155 L~~L~l~~N~l 165 (454)
T 1jl5_A 155 LKIIDVDNNSL 165 (454)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECCCCcC
Confidence 77777765553
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=2.8e-11 Score=112.87 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=69.9
Q ss_pred eEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccc-ccCCCCC
Q 039885 475 RHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE-IEKLIHL 553 (674)
Q Consensus 475 r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~-i~~L~~L 553 (674)
+.+.++++.+..+|..+. ++|+.|++++|. +.+..|..|.++++|++|+| ++|.++.+|.. ++++.+|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L-------s~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ--ITKLEPGVFDHLVNLQQLYF-------NSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEEC-------CSSCCCCCCTTTTTTCTTC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC--ccccCHHHhcCCcCCCEEEC-------CCCCCCccChhHhCCcchh
Confidence 456666666666665543 667777777766 66655666667777777777 77777666654 4667777
Q ss_pred cceeecCCCCcccccc-ccCCCcccEEEecccccccccccccc
Q 039885 554 RFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHGF 595 (674)
Q Consensus 554 r~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~i 595 (674)
++|+|++|.|+.+|+. +..+++|++|+|++| .+...|..+
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N--~~~c~~~~~ 124 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN--PWDCECRDI 124 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--CBCTTBGGG
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCC--CcccccccH
Confidence 7777777777766664 666777777777766 344444433
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.17 E-value=6.3e-11 Score=131.04 Aligned_cols=158 Identities=18% Similarity=0.158 Sum_probs=120.1
Q ss_pred ceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCC
Q 039885 473 KLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIH 552 (674)
Q Consensus 473 ~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~ 552 (674)
+++.|++.+|.+..+|..+. ++|+.|++++|. +.. +| ..+++|++|+| ++|.++++|. +++ +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~--l~~-ip---~~l~~L~~L~L-------s~N~l~~ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNA--LIS-LP---ELPASLEYLDA-------CDNRLSTLPE-LPA--S 121 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC--CSC-CC---CCCTTCCEEEC-------CSSCCSCCCC-CCT--T
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCC--Ccc-cc---cccCCCCEEEc-------cCCCCCCcch-hhc--C
Confidence 68899999999988887663 889999999998 664 45 56789999999 9999999998 776 9
Q ss_pred CcceeecCCCCccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcc
Q 039885 553 LRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLR 632 (674)
Q Consensus 553 Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 632 (674)
|++|+|++|.++.+|. .+++|++|++++| .+..+|. .+++|++|++..|.++. .+. +. .
T Consensus 122 L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N--~l~~lp~---~l~~L~~L~Ls~N~L~~-------lp~----l~--~ 180 (571)
T 3cvr_A 122 LKHLDVDNNQLTMLPE---LPALLEYINADNN--QLTMLPE---LPTSLEVLSVRNNQLTF-------LPE----LP--E 180 (571)
T ss_dssp CCEEECCSSCCSCCCC---CCTTCCEEECCSS--CCSCCCC---CCTTCCEEECCSSCCSC-------CCC----CC--T
T ss_pred CCEEECCCCcCCCCCC---cCccccEEeCCCC--ccCcCCC---cCCCcCEEECCCCCCCC-------cch----hh--C
Confidence 9999999999999998 7899999999999 6788997 68899999998777544 333 22 5
Q ss_pred cCCCeeEEeccCCCCChhhhhhccC-CccCCCCeEEEeecC
Q 039885 633 HLRGSLRIRGLGNVKDVDEAKSAGL-ENKMNLLHLGLGFDK 672 (674)
Q Consensus 633 ~L~g~L~i~~l~~~~~~~~~~~~~L-~~~~~L~~L~L~~~~ 672 (674)
+|+ .|.++++.- ..... +...| .....|+.|+|+.|+
T Consensus 181 ~L~-~L~Ls~N~L-~~lp~-~~~~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 181 SLE-ALDVSTNLL-ESLPA-VPVRNHHSEETEIFFRCRENR 218 (571)
T ss_dssp TCC-EEECCSSCC-SSCCC-CC--------CCEEEECCSSC
T ss_pred CCC-EEECcCCCC-Cchhh-HHHhhhcccccceEEecCCCc
Confidence 666 777776532 22221 11111 111223999999875
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=5.7e-13 Score=127.41 Aligned_cols=111 Identities=18% Similarity=0.167 Sum_probs=58.4
Q ss_pred CccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCcc
Q 039885 486 SFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDE 565 (674)
Q Consensus 486 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~ 565 (674)
.+|..+..+++|+.|++++|. +.. +| .+..+++|++|++ ++|.+..+|..++.+++|++|+|++|.++.
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~--l~~-l~-~~~~l~~L~~L~l-------~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNN--IEK-IS-SLSGMENLRILSL-------GRNLIKKIENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEE--ESC-CC-CHHHHTTCCEEEE-------EEEEECSCSSHHHHHHHCSEEEEEEEECCC
T ss_pred hhhHHHhcCCCCCEEECCCCC--Ccc-cc-ccccCCCCCEEEC-------CCCCcccccchhhcCCcCCEEECcCCcCCc
Confidence 344455555555555555554 433 23 4555555555555 555555555555555555555555555555
Q ss_pred ccccccCCCcccEEEecccccccccccc--ccccCccCCeeeeeeeC
Q 039885 566 LPETCCELFNLQTLEIRQRGYYLRRLPH--GFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 566 lP~~i~~L~~L~~L~l~~~~~~~~~lP~--~i~~L~~L~~L~l~~~~ 610 (674)
+| .++.+++|++|++++| .+..+|. .+..+++|++|++..|.
T Consensus 108 l~-~~~~l~~L~~L~l~~N--~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 108 LS-GIEKLVNLRVLYMSNN--KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HH-HHHHHHHSSEEEESEE--ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CC-ccccCCCCCEEECCCC--cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 54 3555555555555555 3444433 45555555555554433
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=7.2e-11 Score=112.14 Aligned_cols=106 Identities=27% Similarity=0.282 Sum_probs=98.3
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-cccc
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIE 548 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~ 548 (674)
.+..++.|.+.+|.+..+|..+.++++|+.|++++|. +....+..|.++++|+.|+| ++|.++.+| ..++
T Consensus 29 ~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~L-------s~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR--ISTLSNQSFSNMTQLLTLIL-------SYNRLRCIPPRTFD 99 (193)
T ss_dssp CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEEC-------CSSCCCBCCTTTTT
T ss_pred CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc--CCEeCHhHccCCCCCCEEEC-------CCCccCEeCHHHhC
Confidence 4578999999999999999999999999999999998 88877888999999999999 999999966 5799
Q ss_pred CCCCCcceeecCCCCcccccc-ccCCCcccEEEeccc
Q 039885 549 KLIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQR 584 (674)
Q Consensus 549 ~L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~ 584 (674)
++++|++|+|++|.|+.+|.. +..+++|++|++++|
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 999999999999999999985 789999999999998
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=8.8e-13 Score=126.06 Aligned_cols=150 Identities=22% Similarity=0.238 Sum_probs=108.9
Q ss_pred ceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCccccccccCCCcc
Q 039885 497 LRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPETCCELFNL 576 (674)
Q Consensus 497 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~~L 576 (674)
|+.+.+.+....+.. +|..+..+++|++|+| ++|.+..+| .++++++|++|+|++|.++.+|..++.+++|
T Consensus 25 l~~~~l~~~~~~l~~-l~~~~~~l~~L~~L~l-------s~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L 95 (198)
T 1ds9_A 25 AEKVELHGMIPPIEK-MDATLSTLKACKHLAL-------STNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTL 95 (198)
T ss_dssp CSEEECCBCCTTCCC-CHHHHHHTTTCSEEEC-------SEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred hheeEeccccCcHhh-hhHHHhcCCCCCEEEC-------CCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence 444444443222333 4557899999999999 999999988 8999999999999999999999888888999
Q ss_pred cEEEeccccccccccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCCh------h
Q 039885 577 QTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDV------D 650 (674)
Q Consensus 577 ~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~------~ 650 (674)
++|++++| .+..+| .++.+++|++|++..|.+.. . ..+..+..+++|+ .|.+.++...... .
T Consensus 96 ~~L~L~~N--~l~~l~-~~~~l~~L~~L~l~~N~i~~-------~-~~~~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 96 EELWISYN--QIASLS-GIEKLVNLRVLYMSNNKITN-------W-GEIDKLAALDKLE-DLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp SEEEEEEE--ECCCHH-HHHHHHHSSEEEESEEECCC-------H-HHHHHHTTTTTCS-EEEECSCHHHHHHHTTTTHH
T ss_pred CEEECcCC--cCCcCC-ccccCCCCCEEECCCCcCCc-------h-hHHHHHhcCCCCC-EEEecCCccccccccccchH
Confidence 99999999 677787 68999999999998777432 1 1234677788888 8888775321110 1
Q ss_pred hhhhccCCccCCCCeEE
Q 039885 651 EAKSAGLENKMNLLHLG 667 (674)
Q Consensus 651 ~~~~~~L~~~~~L~~L~ 667 (674)
......+..+++|+.|+
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 11122366778888876
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=1.2e-10 Score=110.45 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=98.4
Q ss_pred CCCceeEEEEEcCCcCCcccc--ccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-cc
Q 039885 470 PKEKLRHSMLMLGFEASFPDS--LLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KE 546 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~ 546 (674)
.+..++.|.+++|.+..++.. +..+++|++|++++|. +.+..|..|..+++|++|+| ++|.++.+| ..
T Consensus 27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L-------s~N~l~~~~~~~ 97 (192)
T 1w8a_A 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ--LTGIEPNAFEGASHIQELQL-------GENKIKEISNKM 97 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEEC-------CSCCCCEECSSS
T ss_pred CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC--CCCcCHhHcCCcccCCEEEC-------CCCcCCccCHHH
Confidence 455899999999999888754 8899999999999998 88878889999999999999 999999965 55
Q ss_pred ccCCCCCcceeecCCCCccc-cccccCCCcccEEEecccccccccc
Q 039885 547 IEKLIHLRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRL 591 (674)
Q Consensus 547 i~~L~~Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~l 591 (674)
++++++|++|+|++|.++.+ |..+..+++|++|++++| ......
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~c~c 142 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFNCNC 142 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBCCSG
T ss_pred hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-CccCcC
Confidence 89999999999999999866 778999999999999999 444433
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.12 E-value=8e-11 Score=123.10 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=97.9
Q ss_pred CCCceeEEEEEcCCcCCccc-cccCCCCceEEEecCCCcccccch-hHhhccCCceeE-EEeccccccccccccccc-cc
Q 039885 470 PKEKLRHSMLMLGFEASFPD-SLLNAKKLRSFLISSPYDVFSSVL-PRLFDQLTCLRT-LKIVAHDRRWSRGMIREI-PK 545 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~l~~Lr~-L~L~~~~~~~~~~~l~~l-p~ 545 (674)
.+.++++|.+++|.+..+|. .+.++++|+.|++++|. +.+.+ +..|.++++|.. +.+ .+|.+..+ |.
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~--i~~~i~~~~f~~L~~l~~~l~~-------~~N~l~~l~~~ 98 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND--VLEVIEADVFSNLPKLHEIRIE-------KANNLLYINPE 98 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT--TCCEECTTSBCSCTTCCEEEEE-------EETTCCEECTT
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC--CCCccChhHhhcchhhhhhhcc-------cCCcccccCch
Confidence 45789999999999998886 57899999999999997 54433 456788877664 566 67888886 56
Q ss_pred cccCCCCCcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccc-cccCc-cCCeeeeeeeCcc
Q 039885 546 EIEKLIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHG-FGRLV-NLRHLSEFVVGIT 612 (674)
Q Consensus 546 ~i~~L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~-~L~~L~l~~~~~~ 612 (674)
.+..+++|++|++++|.++.+|+. +....++.+|++.++ ..+..+|.. +..+. .|++|++..|+++
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccc-cccccccccchhhcchhhhhhcccccccc
Confidence 788999999999999998877753 445556777777665 466666653 44443 4667777555543
No 140
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.12 E-value=2.8e-11 Score=127.22 Aligned_cols=182 Identities=14% Similarity=0.082 Sum_probs=104.0
Q ss_pred ceeEEEEEcCCcCCc-cccccCC-----CCceEEEecCCCcccccchhHh----hccC-CceeEEEeccccccccccccc
Q 039885 473 KLRHSMLMLGFEASF-PDSLLNA-----KKLRSFLISSPYDVFSSVLPRL----FDQL-TCLRTLKIVAHDRRWSRGMIR 541 (674)
Q Consensus 473 ~~r~l~l~~~~~~~~-p~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~----~~~l-~~Lr~L~L~~~~~~~~~~~l~ 541 (674)
.+++|.+++|.+... +..+..+ ++|+.|++++|. +....+.. +..+ ++|+.|+| ++|.+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~L-------s~N~l~ 122 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF--LSYKSSDELVKTLAAIPFTITVLDL-------GWNDFS 122 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHHTSCTTCCEEEC-------CSSCGG
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc--CChHHHHHHHHHHHhCCCCccEEEC-------cCCcCC
Confidence 567777777665432 2333332 667777777766 44433332 3333 67777777 777666
Q ss_pred ccc-cc----ccCC-CCCcceeecCCCCc-----cccccccCCC-cccEEEecccccccccc-ccc----cccC-ccCCe
Q 039885 542 EIP-KE----IEKL-IHLRFLQLRDLMID-----ELPETCCELF-NLQTLEIRQRGYYLRRL-PHG----FGRL-VNLRH 603 (674)
Q Consensus 542 ~lp-~~----i~~L-~~Lr~L~L~~~~i~-----~lP~~i~~L~-~L~~L~l~~~~~~~~~l-P~~----i~~L-~~L~~ 603 (674)
..+ .. +..+ .+|++|+|++|.++ .++..+..+. +|++|+|++| .+... |.. +..+ ++|++
T Consensus 123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~ 200 (362)
T 3goz_A 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN--NLASKNCAELAKFLASIPASVTS 200 (362)
T ss_dssp GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC--CCchhhHHHHHHHHHhCCCCCCE
Confidence 533 22 3332 47777777777766 4555555555 7777777777 34333 322 3344 57888
Q ss_pred eeeeeeCccCCCCCCCCCCC-ChhhccCc-ccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeecC
Q 039885 604 LSEFVVGITGSRNDSRSRGC-KLEVLGQL-RHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 604 L~l~~~~~~~~~~~~~~~~~-~~~~L~~L-~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
|++..|.+.. . ... ....+..+ ++|+ .|.++++.-...........+..+++|+.|+|++|+
T Consensus 201 L~Ls~N~i~~----~--~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 201 LDLSANLLGL----K--SYAELAYIFSSIPNHVV-SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp EECTTSCGGG----S--CHHHHHHHHHHSCTTCC-EEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred EECCCCCCCh----h--HHHHHHHHHhcCCCCce-EEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 8776655333 1 111 12234332 3677 777777643333334444556778889999998874
No 141
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=7e-10 Score=114.37 Aligned_cols=185 Identities=14% Similarity=0.178 Sum_probs=117.7
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFG-KRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 215 (674)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++... ...+. ..++++.+...... ..+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHHH
Confidence 469999999999999987532 23389999999999999999987421 11121 23444444332222 12222
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHc-CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh-HHh-hcCCC
Q 039885 216 IEALEGSATNLVELNALLLRINESI-AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET-VAG-MMEST 292 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va~-~~~~~ 292 (674)
+..+.... ..+ .+++.++|+||++......++.+...+.....++++|+||.... +.. .....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22221000 012 45689999999987766667777777765556778888886543 111 11223
Q ss_pred CeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHH-HHHHH
Q 039885 293 DVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLA-VKTIG 347 (674)
Q Consensus 293 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa-i~~~~ 347 (674)
..+++.+++.++..+++...+...+.... .+....|++.|+|.|.. +..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 48999999999999999887643322111 24456799999999955 44443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=1.1e-10 Score=108.38 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=65.7
Q ss_pred eEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccc-ccCCCCC
Q 039885 475 RHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE-IEKLIHL 553 (674)
Q Consensus 475 r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~-i~~L~~L 553 (674)
+.++++++.+..+|..+. ++|+.|++++|. +.+..|..|..+++|++|+| ++|.++.+|.. +.++.+|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L-------s~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDL-------DNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEEC-------CSSCCCCCCTTTTTTCTTC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCc--CCccChhhhcCcccCCEEEC-------CCCCcCccChhhccCCCCC
Confidence 456666666666665442 667777777766 66655666677777777777 77777665543 4667777
Q ss_pred cceeecCCCCcccccc-ccCCCcccEEEeccc
Q 039885 554 RFLQLRDLMIDELPET-CCELFNLQTLEIRQR 584 (674)
Q Consensus 554 r~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~ 584 (674)
++|+|++|.|+.+|+. +..+++|++|+|++|
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 7777777777766653 666777777777766
No 143
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.08 E-value=3.2e-11 Score=126.73 Aligned_cols=183 Identities=15% Similarity=0.136 Sum_probs=129.3
Q ss_pred CceeEEEEEcCCcCCcc-c----cccCC-CCceEEEecCCCcccccchhHh----hcc-CCceeEEEecccccccccccc
Q 039885 472 EKLRHSMLMLGFEASFP-D----SLLNA-KKLRSFLISSPYDVFSSVLPRL----FDQ-LTCLRTLKIVAHDRRWSRGMI 540 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p-~----~~~~l-~~L~~L~l~~~~~~~~~~~~~~----~~~-l~~Lr~L~L~~~~~~~~~~~l 540 (674)
..+++|++++|.+...+ . .+..+ ++|++|++++|. +....+.. +.. .++|++|+| ++|.+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~L-------s~N~l 150 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNL-------RGNDL 150 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEEC-------TTSCG
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEc-------cCCcC
Confidence 78999999999886433 2 24455 899999999998 65544443 344 369999999 98888
Q ss_pred c-----cccccccCCC-CCcceeecCCCCccccc-----cccCC-CcccEEEeccccccccc-----cccccccC-ccCC
Q 039885 541 R-----EIPKEIEKLI-HLRFLQLRDLMIDELPE-----TCCEL-FNLQTLEIRQRGYYLRR-----LPHGFGRL-VNLR 602 (674)
Q Consensus 541 ~-----~lp~~i~~L~-~Lr~L~L~~~~i~~lP~-----~i~~L-~~L~~L~l~~~~~~~~~-----lP~~i~~L-~~L~ 602 (674)
. .++..+..+. +|++|+|++|.++..+. .+..+ ++|++|+|++| .++. +|..+..+ ++|+
T Consensus 151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHHHSCTTCC
T ss_pred CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHhcCCCCce
Confidence 7 3566677776 99999999999875443 34455 59999999999 5666 77777774 5999
Q ss_pred eeeeeeeCccCCCCCCCCCCCChh-hccCcccCCCeeEEeccC--CCCC-hhhhhhccCCccCCCCeEEEeecC
Q 039885 603 HLSEFVVGITGSRNDSRSRGCKLE-VLGQLRHLRGSLRIRGLG--NVKD-VDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 603 ~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~~L~g~L~i~~l~--~~~~-~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
+|++..|.+.. . ....+. -+..+++|+ .|.++++. .+.. ........+.++++|+.|+|++|+
T Consensus 229 ~L~Ls~N~l~~----~--~~~~l~~~~~~l~~L~-~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 229 SLNLCLNCLHG----P--SLENLKLLKDSLKHLQ-TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEECCSSCCCC----C--CHHHHHHTTTTTTTCS-EEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EEECcCCCCCc----H--HHHHHHHHHhcCCCcc-EEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 99997777444 1 111222 235667777 78877654 2221 134455667888899999998874
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=1.6e-10 Score=107.65 Aligned_cols=103 Identities=19% Similarity=0.300 Sum_probs=87.5
Q ss_pred ceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccc-cccccCCCCCcceeecCCCCcccccc-ccCCC
Q 039885 497 LRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREI-PKEIEKLIHLRFLQLRDLMIDELPET-CCELF 574 (674)
Q Consensus 497 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lP~~-i~~L~ 574 (674)
-+.++++++. +.. +|..+. ++|++|+| ++|.+.++ |..|+++++|++|+|++|.|+.+|.. +.+++
T Consensus 14 ~~~l~~~~n~--l~~-iP~~~~--~~L~~L~L-------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 14 QTLVNCQNIR--LAS-VPAGIP--TDKQRLWL-------NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SSEEECCSSC--CSS-CCSCCC--TTCSEEEC-------CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CcEEEeCCCC--CCc-cCCCcC--CCCcEEEe-------CCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence 3678888887 554 444343 78999999 99999996 67899999999999999999999987 48999
Q ss_pred cccEEEeccccccccccccc-cccCccCCeeeeeeeCccC
Q 039885 575 NLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 575 ~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~ 613 (674)
+|++|+|++| .+..+|.. |..+++|++|++..|.+..
T Consensus 82 ~L~~L~L~~N--~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 82 QLTQLDLNDN--HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TCCEEECCSS--CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hhhEEECCCC--ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9999999999 68889886 9999999999997777444
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.06 E-value=6.2e-10 Score=114.93 Aligned_cols=182 Identities=16% Similarity=0.107 Sum_probs=110.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|++..++.+..++...... ......+.|+|++|+|||++|+.+++.. .. ..++++.+......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~~~------ 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKPGD------ 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSHHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCChHH------
Confidence 46999999999988887521100 1123568899999999999999998732 11 223444333222211
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC------------------CCcEEEE
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ------------------RGSKILV 278 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~Iiv 278 (674)
+...+...+ .+..+|+|||+..........+...+.... .+.++|.
T Consensus 80 ---------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 80 ---------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ---------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ---------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 111111111 245689999998766555565655543321 2345666
Q ss_pred EcCChh-HHhhc-CC-CCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039885 279 TTRKET-VAGMM-ES-TDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL 350 (674)
Q Consensus 279 TtR~~~-va~~~-~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 350 (674)
||.... +...+ .. ...+.+.+++.++...++...+...+.... .+....|++.+.|.|..+..+...+
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 665432 21111 11 258999999999999999887654332221 3456678999999999887765543
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=3.7e-10 Score=105.55 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=97.0
Q ss_pred CCCceeEEEEEcCCcCCcccc-ccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccccc-c
Q 039885 470 PKEKLRHSMLMLGFEASFPDS-LLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKE-I 547 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~-i 547 (674)
.++.+++|.+.+|.+..+|.. +..+++|++|++++|. +....+..|..+++|++|+| ++|.++.+|.. +
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l-------~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ--IQSLPDGVFDKLTKLTILYL-------HENKLQSLPNGVF 96 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEEC-------CSSCCCCCCTTTT
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc--ceEeChhHccCCCccCEEEC-------CCCCccccCHHHh
Confidence 457899999999999877754 6889999999999998 77777777899999999999 99999997754 7
Q ss_pred cCCCCCcceeecCCCCccccccc-cCCCcccEEEecccccccccc
Q 039885 548 EKLIHLRFLQLRDLMIDELPETC-CELFNLQTLEIRQRGYYLRRL 591 (674)
Q Consensus 548 ~~L~~Lr~L~L~~~~i~~lP~~i-~~L~~L~~L~l~~~~~~~~~l 591 (674)
+.+++|++|+|++|.++.+|..+ ..+++|++|++++| ......
T Consensus 97 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~~~~ 140 (177)
T 2o6r_A 97 DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWDCSC 140 (177)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBCCCH
T ss_pred hCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-CeeccC
Confidence 89999999999999999999874 88999999999999 444333
No 147
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.01 E-value=4.8e-10 Score=117.16 Aligned_cols=180 Identities=20% Similarity=0.185 Sum_probs=115.1
Q ss_pred CCceeEEEEEcCCc-CCccc-cccCCCCceEE-EecCCCcccccchhHhhccCCceeEEEecccccc-------------
Q 039885 471 KEKLRHSMLMLGFE-ASFPD-SLLNAKKLRSF-LISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRR------------- 534 (674)
Q Consensus 471 ~~~~r~l~l~~~~~-~~~p~-~~~~l~~L~~L-~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~------------- 534 (674)
..++++|.+++|.+ +.+|. .+.+++++..+ .+.+|. +..+.|..|..+++|++|++.++...
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~--l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 130 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN--LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT--CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc--ccccCchhhhhccccccccccccccccCCchhhcccchh
Confidence 45788888888875 33443 45667776653 444555 66656677778888888888332110
Q ss_pred ----ccc-cccccccc-cccCC-CCCcceeecCCCCccccccccCCCcccEEEeccccccccccccc-cccCccCCeeee
Q 039885 535 ----WSR-GMIREIPK-EIEKL-IHLRFLQLRDLMIDELPETCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSE 606 (674)
Q Consensus 535 ----~~~-~~l~~lp~-~i~~L-~~Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l 606 (674)
..+ +.+..+|. .+..+ ..|++|+|++|.|+.+|..+....+|+.|++++| +.++.+|.+ |..+++|++|++
T Consensus 131 ~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~-n~l~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN-NNLEELPNDVFHGASGPVILDI 209 (350)
T ss_dssp EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC-TTCCCCCTTTTTTEECCSEEEC
T ss_pred hhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC-CcccCCCHHHhccCcccchhhc
Confidence 011 22333332 23444 3588899999999999998888889999999876 589999875 799999999999
Q ss_pred eeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEeec
Q 039885 607 FVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLGFD 671 (674)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~~~ 671 (674)
..|.++. .+. ..+.+|++ |.+.++.+.... ..+.++++|+.+++.++
T Consensus 210 s~N~l~~-------lp~--~~~~~L~~----L~~l~~~~l~~l-----P~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 210 SRTRIHS-------LPS--YGLENLKK----LRARSTYNLKKL-----PTLEKLVALMEASLTYP 256 (350)
T ss_dssp TTSCCCC-------CCS--SSCTTCCE----EECTTCTTCCCC-----CCTTTCCSCCEEECSCH
T ss_pred CCCCcCc-------cCh--hhhccchH----hhhccCCCcCcC-----CCchhCcChhhCcCCCC
Confidence 7777554 222 12333433 333333333321 23677788888887653
No 148
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.00 E-value=4.1e-11 Score=130.22 Aligned_cols=183 Identities=18% Similarity=0.083 Sum_probs=91.8
Q ss_pred CceeEEEEEcCCcCCc-ccccc-----CCCCceEEEecCCCcccccc----hhHhhccCCceeEEEeccccccccccccc
Q 039885 472 EKLRHSMLMLGFEASF-PDSLL-----NAKKLRSFLISSPYDVFSSV----LPRLFDQLTCLRTLKIVAHDRRWSRGMIR 541 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~-p~~~~-----~l~~L~~L~l~~~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~ 541 (674)
+.+++|++++|.+... +..+. ..++|+.|++++|. +... ++..+..+++|+.|++ ++|.+.
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~L-------s~n~l~ 240 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG--VTSDNCRDLCGIVASKASLRELAL-------GSNKLG 240 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC--CBTTHHHHHHHHHHHCTTCCEEEC-------CSSBCH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC--CcHHHHHHHHHHHHhCCCccEEec-------cCCcCC
Confidence 4566666666654321 11111 24466666666665 3331 3555566666666666 666554
Q ss_pred cc------cccccCCCCCcceeecCCCCcc-----ccccccCCCcccEEEeccccccccc-cccccc-----cCccCCee
Q 039885 542 EI------PKEIEKLIHLRFLQLRDLMIDE-----LPETCCELFNLQTLEIRQRGYYLRR-LPHGFG-----RLVNLRHL 604 (674)
Q Consensus 542 ~l------p~~i~~L~~Lr~L~L~~~~i~~-----lP~~i~~L~~L~~L~l~~~~~~~~~-lP~~i~-----~L~~L~~L 604 (674)
.. +..+..+++|++|+|++|.++. +|..+.++++|++|++++| . +.. -+..+. ..++|++|
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~-i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-E-LGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-C-CHHHHHHHHHHHHTSTTCCCCEE
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-C-CchHHHHHHHHHhccCCccceee
Confidence 31 1222346667777777666664 5666666667777777766 2 321 122222 22466777
Q ss_pred eeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCCh-hhhhhccCCc-cCCCCeEEEeecC
Q 039885 605 SEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDV-DEAKSAGLEN-KMNLLHLGLGFDK 672 (674)
Q Consensus 605 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~-~~~~~~~L~~-~~~L~~L~L~~~~ 672 (674)
++..|.++. . ........+..++.|+ .|.++++. +.+. .......+.. .++|+.|+|+.|+
T Consensus 319 ~L~~n~l~~----~-~~~~l~~~l~~~~~L~-~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 319 WVKSCSFTA----A-CCSHFSSVLAQNRFLL-ELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp ECTTSCCBG----G-GHHHHHHHHHHCSSCC-EEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred EcCCCCCch----H-HHHHHHHHHhhCCCcc-EEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 665544322 0 0001223344556666 67766642 2111 1111122222 4678888877763
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=6.3e-10 Score=103.23 Aligned_cols=104 Identities=22% Similarity=0.293 Sum_probs=87.9
Q ss_pred CceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccc-cccccCCCCCcceeecCCCCcccccc-ccCC
Q 039885 496 KLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREI-PKEIEKLIHLRFLQLRDLMIDELPET-CCEL 573 (674)
Q Consensus 496 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lP~~-i~~L 573 (674)
..+.++++++. +.. +|..+ .+.|++|+| ++|.++++ |..++++.+|++|+|++|.|+.+|+. +..+
T Consensus 10 ~~~~l~~s~n~--l~~-ip~~~--~~~l~~L~L-------~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 77 (170)
T 3g39_A 10 SGTTVDCSGKS--LAS-VPTGI--PTTTQVLYL-------YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77 (170)
T ss_dssp ETTEEECTTSC--CSS-CCSCC--CTTCSEEEC-------CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEEeCCCC--cCc-cCccC--CCCCcEEEc-------CCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence 35688898887 655 44433 378999999 99999996 67799999999999999999999986 5899
Q ss_pred CcccEEEeccccccccccccc-cccCccCCeeeeeeeCccC
Q 039885 574 FNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITG 613 (674)
Q Consensus 574 ~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~ 613 (674)
++|++|+|++| .+..+|.. |.++++|++|++..|.+..
T Consensus 78 ~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 78 TQLTQLSLNDN--QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCCEEECCCC--ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999999999 68888775 8999999999997776443
No 150
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.97 E-value=1.2e-10 Score=126.51 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=38.7
Q ss_pred ceeEEEEEcCCcC-----CccccccCCCCceEEEecCCCcccccc-hhHhhccCC----ceeEEEeccccccccccccc-
Q 039885 473 KLRHSMLMLGFEA-----SFPDSLLNAKKLRSFLISSPYDVFSSV-LPRLFDQLT----CLRTLKIVAHDRRWSRGMIR- 541 (674)
Q Consensus 473 ~~r~l~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~l~----~Lr~L~L~~~~~~~~~~~l~- 541 (674)
.++++.+++|.+. .++..+..+++|++|++++|. +... +...+..++ +|++|+| ++|.+.
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~L-------~~n~i~~ 99 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE--LGDVGVHCVLQGLQTPSCKIQKLSL-------QNCCLTG 99 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC--CHHHHHHHHHHTTCSTTCCCCEEEC-------TTSCCBG
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc--CChHHHHHHHHHHhhCCCceeEEEc-------cCCCCCH
Confidence 4455555555443 233444455555555555554 3221 112222233 3555555 555444
Q ss_pred ----cccccccCCCCCcceeecCCCCc
Q 039885 542 ----EIPKEIEKLIHLRFLQLRDLMID 564 (674)
Q Consensus 542 ----~lp~~i~~L~~Lr~L~L~~~~i~ 564 (674)
.+|..+..+++|++|+|++|.++
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHHHHHHHccCCceeEEECCCCcCc
Confidence 23455555555555555555543
No 151
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=4.4e-09 Score=108.56 Aligned_cols=188 Identities=14% Similarity=0.095 Sum_probs=117.4
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccccc-ceEEEEEeCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHF-GKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 215 (674)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+ ...+.+..+..... ...+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHHH
Confidence 46999999999999988743 233489999999999999999987421 1111 12233333321110 011111
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhH-Hhh-cCCCC
Q 039885 216 IEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETV-AGM-MESTD 293 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v-a~~-~~~~~ 293 (674)
+..+.... ....+++.++|+||++......++.+...+.....++++|+||....- ... .....
T Consensus 97 ~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 97 VKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 11110000 011257889999999887767777787777665667888888875431 111 11223
Q ss_pred eEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039885 294 VISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLL 350 (674)
Q Consensus 294 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 350 (674)
.+.+.+++.++...++...+...+.... .+....|++.++|.|..+..+...+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 7899999999999999887654332111 2445678899999998766554443
No 152
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.83 E-value=4.5e-08 Score=99.14 Aligned_cols=171 Identities=11% Similarity=0.031 Sum_probs=105.7
Q ss_pred eeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccccc------ccceEEEEEeCCCCCHHHHH
Q 039885 139 VCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVIN------HFGKRIWVCVSDPFDEYRIA 212 (674)
Q Consensus 139 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~wv~vs~~~~~~~~~ 212 (674)
+.||++|.++|...|...-. .+....+.|+|++|+|||++|+.|+++..... .| ..+.|++....+...++
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHH
T ss_pred cCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHH
Confidence 88999999999988764321 23567789999999999999999988532111 12 34677777778899999
Q ss_pred HHHHHHhhCCCCCc-ccHHHHHHHHHHH--cCCCeEEEEEeCCCCCChhhHHHHHHhhcC-CCCCc--EEEEEcCChh--
Q 039885 213 KAIIEALEGSATNL-VELNALLLRINES--IAREKFLLVLDDVWTEDYNKWESFRRCLIN-GQRGS--KILVTTRKET-- 284 (674)
Q Consensus 213 ~~il~~l~~~~~~~-~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~IivTtR~~~-- 284 (674)
..|++++.+..... ...+.+...+... -.++.+++|||+++... .-+.+...+.. ....+ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 99999996653222 2233333333332 24678999999997653 22333333321 01122 2333333211
Q ss_pred ---H----HhhcCCCCeEeCCCCChHhhHHHHHHHhhc
Q 039885 285 ---V----AGMMESTDVISIKELSERECWSLFERIAFF 315 (674)
Q Consensus 285 ---v----a~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 315 (674)
+ ...++ ...+.+.+++.++-.+++.+++-.
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 11111 246899999999999999887643
No 153
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.82 E-value=4.8e-08 Score=102.78 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=116.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|++..++.+...+.... ....+.|+|++|+||||+|+.+.+.......+.. ..+.. .. ....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~---~~-~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CD-NCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSS---SH-HHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCcc---cH-HHHHHh
Confidence 359999999999999986432 2346889999999999999999764211111100 00000 00 001111
Q ss_pred HHh-------hCC-CCCcccHHHHHHHHHHH-cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh-HH
Q 039885 217 EAL-------EGS-ATNLVELNALLLRINES-IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET-VA 286 (674)
Q Consensus 217 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va 286 (674)
... ... .........+...+... ..+++.++|+||++..+...++.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 01112223332222111 235678999999987776777888777766556677777776432 11
Q ss_pred -hhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 287 -GMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 287 -~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
........+++.+++.++...++...+...+.... .+....|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHHH
Confidence 11123458999999999999999876543222111 23456799999999998876653
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=8.8e-09 Score=107.32 Aligned_cols=99 Identities=19% Similarity=0.134 Sum_probs=84.2
Q ss_pred EEEEEcC-CcCCccccccCCCCceEEEecC-CCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccCCCC
Q 039885 476 HSMLMLG-FEASFPDSLLNAKKLRSFLISS-PYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEKLIH 552 (674)
Q Consensus 476 ~l~l~~~-~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L~~ 552 (674)
.+...++ .+..+|. +..+++|+.|++++ |. +....+..|..+++|+.|+| ++|.++++| ..|++|.+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l-------~~N~l~~~~~~~~~~l~~ 81 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQH--LQHLELRDLRGLGELRNLTI-------VKSGLRFVAPDAFHFTPR 81 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS--CCEECGGGSCSCCCCSEEEC-------CSSCCCEECTTGGGSCSC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC--CCCcChhHhccccCCCEEEC-------CCCccceeCHHHhcCCcC
Confidence 3556666 7788898 99999999999996 87 77777788999999999999 999999955 57899999
Q ss_pred CcceeecCCCCccccccccCCCcccEEEeccc
Q 039885 553 LRFLQLRDLMIDELPETCCELFNLQTLEIRQR 584 (674)
Q Consensus 553 Lr~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~ 584 (674)
|++|+|++|.|+.+|+.+.....|+.|+|.+|
T Consensus 82 L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred CCEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence 99999999999999987655445999999988
No 155
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.75 E-value=9e-08 Score=98.22 Aligned_cols=183 Identities=14% Similarity=0.074 Sum_probs=114.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFG-KRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 215 (674)
.+++|++..++.+..++... ..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~------ 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID------ 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH------
Confidence 46999999999999888643 223389999999999999999987421 11111 12334443321110
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHH--c-CCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh-HHhh-cC
Q 039885 216 IEALEGSATNLVELNALLLRINES--I-AREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET-VAGM-ME 290 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va~~-~~ 290 (674)
............ + .+++.++|+|+++.......+.+...+.....+.++|+||.... +... ..
T Consensus 84 ------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 84 ------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 111111111111 2 25688999999987666666777777766556778888776543 1111 12
Q ss_pred CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 291 STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 291 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
....+.+.+++.++...++...+...+.... .+....|++.++|.|..+.....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2348999999999999999887654332222 23456688999999987665443
No 156
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.74 E-value=4.4e-09 Score=118.02 Aligned_cols=153 Identities=16% Similarity=0.063 Sum_probs=71.3
Q ss_pred CCCCceEEEecCCCcccccc----hhHhhccCCceeEEEeccccccccccccc-----cccccccCCCCCcceeecCCCC
Q 039885 493 NAKKLRSFLISSPYDVFSSV----LPRLFDQLTCLRTLKIVAHDRRWSRGMIR-----EIPKEIEKLIHLRFLQLRDLMI 563 (674)
Q Consensus 493 ~l~~L~~L~l~~~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~-----~lp~~i~~L~~Lr~L~L~~~~i 563 (674)
.+++|+.|++.+|. +... ++..+..+++|+.|++ ++|.+. .++..+.++++|++|+|++|.+
T Consensus 162 ~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~~~~L~~L~L-------~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 162 HCRKIKTLLMEESS--FSEKDGKWLHELAQHNTSLEVLNF-------YMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HCTTCSEEECTTCE--EECCCSHHHHHHHHHCCCCCEEEC-------TTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred hCCCCCEEECcccc--ccCcchhHHHHHHhcCCCccEEEe-------eccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 44455555555443 2221 3333444455555555 444443 1333344455555555555555
Q ss_pred ccccccccCCCcccEEEeccccccc---cccccccccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEE
Q 039885 564 DELPETCCELFNLQTLEIRQRGYYL---RRLPHGFGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRI 640 (674)
Q Consensus 564 ~~lP~~i~~L~~L~~L~l~~~~~~~---~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i 640 (674)
..+|..+.++++|+.|+++++ ... ...+..+..+++|++|++..+. .......+..+++|+ .|.+
T Consensus 233 ~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~----------~~~l~~~~~~~~~L~-~L~L 300 (592)
T 3ogk_B 233 LELVGFFKAAANLEEFCGGSL-NEDIGMPEKYMNLVFPRKLCRLGLSYMG----------PNEMPILFPFAAQIR-KLDL 300 (592)
T ss_dssp GGGHHHHHHCTTCCEEEECBC-CCCTTCTTSSSCCCCCTTCCEEEETTCC----------TTTGGGGGGGGGGCC-EEEE
T ss_pred HHHHHHHhhhhHHHhhccccc-ccccchHHHHHHhhccccccccCccccc----------hhHHHHHHhhcCCCc-EEec
Confidence 555555555555555555433 111 2223344455555555442211 112222344556666 6777
Q ss_pred eccCCCCChhhhhhccCCccCCCCeEEEe
Q 039885 641 RGLGNVKDVDEAKSAGLENKMNLLHLGLG 669 (674)
Q Consensus 641 ~~l~~~~~~~~~~~~~L~~~~~L~~L~L~ 669 (674)
++.. +. .......+..+++|+.|+|+
T Consensus 301 s~~~-l~--~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 301 LYAL-LE--TEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TTCC-CC--HHHHHHHHTTCTTCCEEEEE
T ss_pred CCCc-CC--HHHHHHHHHhCcCCCEEecc
Confidence 6654 22 11222335667788888876
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=1.9e-08 Score=104.80 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=84.2
Q ss_pred EEEecCC-CcccccchhHhhccCCceeEEEeccccccccc-ccccccc-ccccCCCCCcceeecCCCCccccc-cccCCC
Q 039885 499 SFLISSP-YDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSR-GMIREIP-KEIEKLIHLRFLQLRDLMIDELPE-TCCELF 574 (674)
Q Consensus 499 ~L~l~~~-~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~-~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lP~-~i~~L~ 574 (674)
.++++++ . +.. +|. +..+++|+.|+| ++ |.+..+| ..|++|.+|++|+|++|.|+.+|+ .+++|+
T Consensus 12 ~v~~~~~n~--l~~-ip~-l~~~~~L~~L~l-------~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGA--LDS-LHH-LPGAENLTELYI-------ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp CEECCSSCC--CTT-TTT-SCSCSCCSEEEC-------CSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred EEEcCCCCC--CCc-cCC-CCCCCCeeEEEc-------cCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence 4577766 5 555 677 999999999999 96 9999977 679999999999999999998876 579999
Q ss_pred cccEEEeccccccccccccccccCccCCeeeeeeeCcc
Q 039885 575 NLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGIT 612 (674)
Q Consensus 575 ~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~ 612 (674)
+|+.|+|++| .+..+|..+....+|++|++..|.+.
T Consensus 81 ~L~~L~l~~N--~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 81 RLSRLNLSFN--ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCCEEECCSS--CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCCEEeCCCC--ccceeCHHHcccCCceEEEeeCCCcc
Confidence 9999999999 68889887554445999999766643
No 158
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.69 E-value=1.3e-08 Score=114.20 Aligned_cols=174 Identities=13% Similarity=0.031 Sum_probs=131.1
Q ss_pred CCceeEEEEEcCCcCC-----ccccccCCCCceEEEecCCCcccc----cchhHhhccCCceeEEEeccccccccccccc
Q 039885 471 KEKLRHSMLMLGFEAS-----FPDSLLNAKKLRSFLISSPYDVFS----SVLPRLFDQLTCLRTLKIVAHDRRWSRGMIR 541 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~ 541 (674)
.+++++|.+.+|.+.. ++.....+++|++|+++++. +. ..++..+.++++|+.|++ ++|.+.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~--~~~~~~~~l~~~~~~~~~L~~L~L-------~~~~~~ 233 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE--FAKISPKDLETIARNCRSLVSVKV-------GDFEIL 233 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC--CSSCCHHHHHHHHHHCTTCCEEEC-------SSCBGG
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC--CCccCHHHHHHHHhhCCCCcEEec-------cCccHH
Confidence 4678999998886532 33445678999999999887 43 346677789999999999 999999
Q ss_pred cccccccCCCCCcceeecCCC-C---ccccccccCCCcccEEEeccccccccccccccccCccCCeeeeeeeCccCCCCC
Q 039885 542 EIPKEIEKLIHLRFLQLRDLM-I---DELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSEFVVGITGSRND 617 (674)
Q Consensus 542 ~lp~~i~~L~~Lr~L~L~~~~-i---~~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~~~ 617 (674)
++|..++++++|++|+++.+. . ...+..+..+++|+.|+++++ ....+|..+..+++|++|++..+.++
T Consensus 234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~Ls~~~l~----- 306 (592)
T 3ogk_B 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM--GPNEMPILFPFAAQIRKLDLLYALLE----- 306 (592)
T ss_dssp GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC--CTTTGGGGGGGGGGCCEEEETTCCCC-----
T ss_pred HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc--chhHHHHHHhhcCCCcEEecCCCcCC-----
Confidence 999999999999999998543 2 355667889999999999987 57888999999999999999655421
Q ss_pred CCCCCCCh-hhccCcccCCCeeEEeccCCCCChhhhhhccCCccCCCCeEEEe
Q 039885 618 SRSRGCKL-EVLGQLRHLRGSLRIRGLGNVKDVDEAKSAGLENKMNLLHLGLG 669 (674)
Q Consensus 618 ~~~~~~~~-~~L~~L~~L~g~L~i~~l~~~~~~~~~~~~~L~~~~~L~~L~L~ 669 (674)
...+ .-+..+++|+ .|.+.+ ++ ...........+++|++|+|+
T Consensus 307 ----~~~~~~~~~~~~~L~-~L~L~~--~~--~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 307 ----TEDHCTLIQKCPNLE-VLETRN--VI--GDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp ----HHHHHHHHTTCTTCC-EEEEEG--GG--HHHHHHHHHHHCTTCCEEEEE
T ss_pred ----HHHHHHHHHhCcCCC-EEeccC--cc--CHHHHHHHHHhCCCCCEEEee
Confidence 1222 2356777777 788773 21 223333444667899999999
No 159
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=5.8e-07 Score=93.59 Aligned_cols=195 Identities=11% Similarity=0.068 Sum_probs=115.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFG-KRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 215 (674)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+.+.......+. ..+.+..+....... +++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 469999999999999987532 22388999999999999999987421111121 223344443323322 2222
Q ss_pred HHHhhCC-CCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh-HHhh-cCCC
Q 039885 216 IEALEGS-ATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET-VAGM-MEST 292 (674)
Q Consensus 216 l~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va~~-~~~~ 292 (674)
+..+... ....... .....-.++.-+|++|++..........+...+.......++|++|.... +... ....
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2222111 0000000 00111124567999999977666666777777665555667777765432 1111 1112
Q ss_pred CeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 293 DVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 293 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
..+.+.+++.++....+...+...+.... .+....|++.++|.|..+..+.
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 47899999999999999887643332222 3456679999999998765543
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=3.5e-09 Score=111.19 Aligned_cols=156 Identities=15% Similarity=0.073 Sum_probs=109.8
Q ss_pred CCceeEEEEEcCCcCCc-----ccccc-CCCCceEEEecCCCcccccc-hhHhhccCCceeEEEeccccccccccccccc
Q 039885 471 KEKLRHSMLMLGFEASF-----PDSLL-NAKKLRSFLISSPYDVFSSV-LPRLFDQLTCLRTLKIVAHDRRWSRGMIREI 543 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~-----p~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~l 543 (674)
.+.++.+++++|.+... ...+. ..++|+.|++++|. +... +......+++|+.|+| ++|.+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~L~~L~L-------s~n~l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ--LDPAGLRTLLPVFLRARKLGL-------QLNSLGPE 141 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC--CCHHHHHHTHHHHHTEEEEEC-------CSSCCCHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC--CCHHHHHHHHHHHHhccHhhc-------CCCCCCHH
Confidence 35688999999987532 22222 23799999999997 5322 2333455678999999 99988652
Q ss_pred -cccc-----cCCCCCcceeecCCCCcc-----ccccccCCCcccEEEecccccccc-----ccccccccCccCCeeeee
Q 039885 544 -PKEI-----EKLIHLRFLQLRDLMIDE-----LPETCCELFNLQTLEIRQRGYYLR-----RLPHGFGRLVNLRHLSEF 607 (674)
Q Consensus 544 -p~~i-----~~L~~Lr~L~L~~~~i~~-----lP~~i~~L~~L~~L~l~~~~~~~~-----~lP~~i~~L~~L~~L~l~ 607 (674)
...+ ....+|++|+|++|.|+. ++..+..+++|++|+|++| .++ .++..+...++|++|++.
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 2233 346789999999999864 6677788999999999999 344 356778888999999997
Q ss_pred eeCccCCCCCCCCCC-CChhhccCcccCCCeeEEeccC
Q 039885 608 VVGITGSRNDSRSRG-CKLEVLGQLRHLRGSLRIRGLG 644 (674)
Q Consensus 608 ~~~~~~~~~~~~~~~-~~~~~L~~L~~L~g~L~i~~l~ 644 (674)
.|.++. . .. .....|...+.|+ .|+++++.
T Consensus 220 ~N~i~~----~--g~~~l~~~L~~~~~L~-~L~Ls~N~ 250 (372)
T 3un9_A 220 YNGAGD----T--AALALARAAREHPSLE-LLHLYFNE 250 (372)
T ss_dssp SSCCCH----H--HHHHHHHHHHHCSSCC-EEECTTSS
T ss_pred CCCCCH----H--HHHHHHHHHHhCCCCC-EEeccCCC
Confidence 776443 1 11 1223455567777 88888764
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.58 E-value=2e-07 Score=87.52 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=82.0
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccc---cc--ccceEEEEEeCCCCCHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDV---IN--HFGKRIWVCVSDPFDEYRI 211 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~--~F~~~~wv~vs~~~~~~~~ 211 (674)
.+++||+++++++.+.+... ..+.+.|+|++|+|||+||+.+++...- .. .....+++.++ .+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG------AL 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH------HH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH------HH
Confidence 46999999999999998753 3345789999999999999999874211 00 11223344321 11
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHc--CCCeEEEEEeCCCCCC--------hhhHHHHHHhhcCCCCCcEEEEEcC
Q 039885 212 AKAIIEALEGSATNLVELNALLLRINESI--AREKFLLVLDDVWTED--------YNKWESFRRCLINGQRGSKILVTTR 281 (674)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IivTtR 281 (674)
. ...............+...+ .+++.+|||||++... ......+...+.. .+..+|+||.
T Consensus 90 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 90 V--------AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp H--------TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred h--------ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 0 00000111111111111111 4567899999996532 1113334333332 2345666665
Q ss_pred ChhHHhh-------cCCCCeEeCCCCChHhhHHHH
Q 039885 282 KETVAGM-------MESTDVISIKELSERECWSLF 309 (674)
Q Consensus 282 ~~~va~~-------~~~~~~~~l~~L~~~~~~~Lf 309 (674)
....... ......+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 5432211 122236888888888766543
No 162
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.57 E-value=2.8e-08 Score=111.44 Aligned_cols=127 Identities=16% Similarity=0.159 Sum_probs=79.2
Q ss_pred CceeEEEEEcCCcCC-cccccc-CCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccc-----cc
Q 039885 472 EKLRHSMLMLGFEAS-FPDSLL-NAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-----IP 544 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~-~p~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-----lp 544 (674)
+.+++|.+.++.+.. .+..+. .+++|++|.+.++.......++..+.++++|++|+| ++|.++. ++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L-------~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL-------RESDVDDVSGHWLS 177 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC-------TTCEEECCCGGGGG
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC-------cCCccCCcchHHHH
Confidence 467778887776542 223333 577888888887741111124555667888888888 7776544 23
Q ss_pred ccccCCCCCcceeecCCC--Cc--cccccccCCCcccEEEeccccccccccccccccCccCCeeee
Q 039885 545 KEIEKLIHLRFLQLRDLM--ID--ELPETCCELFNLQTLEIRQRGYYLRRLPHGFGRLVNLRHLSE 606 (674)
Q Consensus 545 ~~i~~L~~Lr~L~L~~~~--i~--~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~i~~L~~L~~L~l 606 (674)
.....+++|++|+|++|. +. .++.-+.++++|++|++++| ..+..+|..+.++++|++|++
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA-VPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT-SCHHHHHHHHHHCTTCSEEEC
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC-CcHHHHHHHHhcCCcceEccc
Confidence 333366678888888775 22 23333455677888888877 555666766777777777764
No 163
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.53 E-value=1.5e-07 Score=92.27 Aligned_cols=175 Identities=17% Similarity=0.139 Sum_probs=100.1
Q ss_pred Cceeech---hhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 137 SDVCGRV---EEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
.+|+|.+ ..++.+..+.... ..+.+.|+|++|+||||||+.+++.. ......+.|+.++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHHH-----
Confidence 4577633 4455555555432 34578899999999999999998742 222234566665431100
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhh--HHHHHHhhcCC-CCC-cEEEEEcCChh-----
Q 039885 214 AIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNK--WESFRRCLING-QRG-SKILVTTRKET----- 284 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~IivTtR~~~----- 284 (674)
.. . .+ +.+ .+..+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 ---------~~------~---~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 ---------ST------A---LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ---------CG------G---GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ---------HH------H---HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 0 00 011 345689999997643322 33344433211 122 24777776322
Q ss_pred ----HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 285 ----VAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 285 ----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
+...+.....+++.+++.++..+++...+...+.... .+....|++.++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP----EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC----HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHccCCHHHHHHHHH
Confidence 1111112268999999999999999887643332111 34556788999999877765543
No 164
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=2.4e-07 Score=95.66 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=60.0
Q ss_pred CCCCcceeecCCCCcccccc-ccCCCcccEEEeccccccccccccc-cccCccCC-eeeeeeeCccCCCCCCCCCCCChh
Q 039885 550 LIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLR-HLSEFVVGITGSRNDSRSRGCKLE 626 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~-~L~l~~~~~~~~~~~~~~~~~~~~ 626 (674)
+.+|++|+|++|.++.+|+. +..+.+|+.|++.+| +..+|.. |.++.+|+ .|.+.. +++. . ...
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n---i~~I~~~aF~~~~~L~~~l~l~~-~l~~----I--~~~--- 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN---LKTIGQRVFSNCGRLAGTLELPA-SVTA----I--EFG--- 291 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCEEEEECT-TCCE----E--CTT---
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc---cceehHHHhhCChhccEEEEEcc-cceE----E--chh---
Confidence 56788888888778888764 677888888888776 6667654 77888888 777732 2111 0 112
Q ss_pred hccCcccCCCeeEEec--cCCCCChhhhhhccCCccCCCCeEE
Q 039885 627 VLGQLRHLRGSLRIRG--LGNVKDVDEAKSAGLENKMNLLHLG 667 (674)
Q Consensus 627 ~L~~L~~L~g~L~i~~--l~~~~~~~~~~~~~L~~~~~L~~L~ 667 (674)
.+.++.+|+ .|.+.+ +..+. ...+.++++|+.|+
T Consensus 292 aF~~c~~L~-~l~l~~n~i~~I~------~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLR-YVLATGDKITTLG------DELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEE-EEEECSSCCCEEC------TTTTCTTCCCCEEE
T ss_pred hhhCCccCC-EEEeCCCccCccc------hhhhcCCcchhhhc
Confidence 233444444 555532 22222 24567777887775
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.45 E-value=3.5e-06 Score=84.84 Aligned_cols=187 Identities=15% Similarity=0.094 Sum_probs=101.5
Q ss_pred ccCceeechhhHHHHHHHhcCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSE-------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD 207 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 207 (674)
.-.+++|.+..+++|.+.+...... .-...+.+.|+|++|+|||+||+.+++.. ... .+.+..+.-.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~~---~~~v~~~~~~- 88 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NAT---FIRVVGSELV- 88 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TCE---EEEEEGGGGC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEehHHHH-
Confidence 3457999999999998877431000 00134568999999999999999998742 222 1223322110
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-----------ChhhHHHHH---Hhhc--CCC
Q 039885 208 EYRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-----------DYNKWESFR---RCLI--NGQ 271 (674)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~---~~l~--~~~ 271 (674)
.... ..........+......+..+|+|||++.. +......+. ..+. ...
T Consensus 89 -------------~~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 89 -------------KKFI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------CCST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------Hhcc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 0000 011111222222333456689999999532 111122232 2222 123
Q ss_pred CCcEEEEEcCChhHH-----hhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCC-ChHHHHH
Q 039885 272 RGSKILVTTRKETVA-----GMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKG-LPLAVKT 345 (674)
Q Consensus 272 ~gs~IivTtR~~~va-----~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~ 345 (674)
.+..||.||...... ....-...+.+...+.++..+++...+..... .....+ ..|++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~----~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVNL----EEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCCH----HHHHHHcCCCCHHHHHH
Confidence 456777788754221 11011237899999999999999887643322 111223 447777777 4545544
Q ss_pred H
Q 039885 346 I 346 (674)
Q Consensus 346 ~ 346 (674)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.45 E-value=2.3e-06 Score=89.67 Aligned_cols=197 Identities=11% Similarity=0.055 Sum_probs=109.9
Q ss_pred cCceeechhhHHH---HHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe----CCCCCH
Q 039885 136 VSDVCGRVEEKST---LKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCV----SDPFDE 208 (674)
Q Consensus 136 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v----s~~~~~ 208 (674)
-.++||++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+.+... .... .+.+.. +.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~-~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG--PDTP-FTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC--SSCC-EEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc--ccCC-cccccchhhhhcccch
Confidence 3479999988766 444554332 1235789999999999999999987432 1111 112221 223344
Q ss_pred HHHHHHHHHHhhCC---------------------C-------CC-----cccHHHHHHHHHHH--cCCC----eEEEEE
Q 039885 209 YRIAKAIIEALEGS---------------------A-------TN-----LVELNALLLRINES--IARE----KFLLVL 249 (674)
Q Consensus 209 ~~~~~~il~~l~~~---------------------~-------~~-----~~~~~~~~~~l~~~--l~~k----r~LlVl 249 (674)
.+.+.+.+....+. . .. .............. ..++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 44444444331110 0 00 11111122221111 1233 359999
Q ss_pred eCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC-----------------hhHHhhcCCCCeEeCCCCChHhhHHHHHHH
Q 039885 250 DDVWTEDYNKWESFRRCLINGQRGSKILVTTRK-----------------ETVAGMMESTDVISIKELSERECWSLFERI 312 (674)
Q Consensus 250 Ddv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~-----------------~~va~~~~~~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
|++..........+...+...... .++++|.. +.+.. ....+.+.+++.++..+++...
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHH
Confidence 999887767777777776554433 34444321 12222 2235899999999999999887
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHcC-CChHHHHHHH
Q 039885 313 AFFNRPSLECEQLEEFGRKIVSKCK-GLPLAVKTIG 347 (674)
Q Consensus 313 a~~~~~~~~~~~l~~~~~~I~~~c~-GlPLai~~~~ 347 (674)
+...+.... .+....|++.+. |.|-.+..+.
T Consensus 272 ~~~~~~~~~----~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 272 CEEEDVEMS----EDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHHTTCCBC----HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhcCCCHHHHHHHH
Confidence 654332222 234566888887 7776655443
No 167
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=1.3e-06 Score=91.05 Aligned_cols=197 Identities=12% Similarity=0.139 Sum_probs=109.4
Q ss_pred CceeechhhHHHHHHHh-cCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCc---cccc-ccce---------------
Q 039885 137 SDVCGRVEEKSTLKSKL-LGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDN---DVIN-HFGK--------------- 196 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~-~F~~--------------- 196 (674)
.+++|.+..++.+..++ ... ....+.|+|+.|+||||+|+.++... .... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~------~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR------DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT------CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46899999988888887 432 22228999999999999999886621 1000 0000
Q ss_pred -----EEEEEeCCCC-CHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC
Q 039885 197 -----RIWVCVSDPF-DEYRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING 270 (674)
Q Consensus 197 -----~~wv~vs~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 270 (674)
.+.+..+... ......++++..+..... ..... .+ ..+.+++-++|||++...+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111100 000012223322211110 00000 00 002346679999999887777777777777654
Q ss_pred CCCcEEEEEcCChh-HHh-hcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 271 QRGSKILVTTRKET-VAG-MMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 271 ~~gs~IivTtR~~~-va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
..+..+|++|.... +.. .......+++.+++.++....+...+...+...+. .+....|++.++|.+-.+..+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 55677777776532 211 11223689999999999999998876433221110 23456688999999977665543
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.44 E-value=2.5e-06 Score=91.32 Aligned_cols=162 Identities=14% Similarity=0.168 Sum_probs=97.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccc--eEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFG--KRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
...+.|+|++|+||||||+.+++. ....+. ..++++. ..+..++...+.... . ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~~-----~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEGK-----L----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTTC-----H----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHccc-----H----HHHHHHhc
Confidence 556899999999999999999884 323332 2344433 334455555543321 1 12333334
Q ss_pred CCeEEEEEeCCCCCCh--hhHHHHHHhhcC-CCCCcEEEEEcCCh---------hHHhhcCCCCeEeCCCCChHhhHHHH
Q 039885 242 REKFLLVLDDVWTEDY--NKWESFRRCLIN-GQRGSKILVTTRKE---------TVAGMMESTDVISIKELSERECWSLF 309 (674)
Q Consensus 242 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~IivTtR~~---------~va~~~~~~~~~~l~~L~~~~~~~Lf 309 (674)
.+.-+|+|||++.... ...+.+...+.. ...|..||+||.+. .+...+.....+.+.+++.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3667999999965432 233444444322 23567888888763 22222333457899999999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 310 ERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 310 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
.+.+...+...+. ++...|++.+.|.+-.+..+
T Consensus 273 ~~~~~~~~~~i~~----e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 273 RKMLEIEHGELPE----EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHTCCCCT----THHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHcCCCCCH----HHHHHHHHhcCCCHHHHHHH
Confidence 8876432221111 23456888999988665543
No 169
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=1.2e-07 Score=98.61 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=98.8
Q ss_pred cccCCCCceEEEecCCCcc---c----ccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCC
Q 039885 490 SLLNAKKLRSFLISSPYDV---F----SSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLM 562 (674)
Q Consensus 490 ~~~~l~~L~~L~l~~~~~~---~----~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~ 562 (674)
.+.++++|++|.+...... + ...++..+..+++|+.|.| ++|.-..+|. + .+.+|+.|+|..|.
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L-------~g~~~l~l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKI-------KGTNNLSIGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEE-------ECCBTCBCCS-C-BCTTCSEEEEECSB
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEE-------eCCCCceecc-c-cCCCCcEEEEecCC
Confidence 3456788888888654310 1 1225566788889999999 7763223454 4 37889999998877
Q ss_pred Ccc-cccccc--CCCcccEEEecccc-cc-----cccccccc--ccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCc
Q 039885 563 IDE-LPETCC--ELFNLQTLEIRQRG-YY-----LRRLPHGF--GRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQL 631 (674)
Q Consensus 563 i~~-lP~~i~--~L~~L~~L~l~~~~-~~-----~~~lP~~i--~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 631 (674)
+.. -...++ ++++|++|+|+.+. .. +..+...+ ..+++|++|++..+.+.. . ....+.+-+.+
T Consensus 205 l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~----~--~~~~la~a~~~ 278 (362)
T 2ra8_A 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN----V--VVEMFLESDIL 278 (362)
T ss_dssp CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH----H--HHHHHHHCSSG
T ss_pred CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch----H--HHHHHHhCccC
Confidence 642 122333 78899999886320 11 22222222 357889999987665332 1 11233333457
Q ss_pred ccCCCeeEEeccCCCCC-hhhhhhccCCccCCCCeEEEeecC
Q 039885 632 RHLRGSLRIRGLGNVKD-VDEAKSAGLENKMNLLHLGLGFDK 672 (674)
Q Consensus 632 ~~L~g~L~i~~l~~~~~-~~~~~~~~L~~~~~L~~L~L~~~~ 672 (674)
++|+ .|.++.+. +.+ ...++...|..+++|++|+|+.|.
T Consensus 279 ~~L~-~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 279 PQLE-TMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGCS-EEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCC-EEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 7777 78876532 222 122344455677889999998774
No 170
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.42 E-value=5.2e-08 Score=109.23 Aligned_cols=108 Identities=17% Similarity=0.097 Sum_probs=80.3
Q ss_pred cCCCCceEEEecCCCcccccchhHhhc-cCCceeEEEecccccccccc-cccc--ccccccCCCCCcceeecCCCCcc--
Q 039885 492 LNAKKLRSFLISSPYDVFSSVLPRLFD-QLTCLRTLKIVAHDRRWSRG-MIRE--IPKEIEKLIHLRFLQLRDLMIDE-- 565 (674)
Q Consensus 492 ~~l~~L~~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~-~l~~--lp~~i~~L~~Lr~L~L~~~~i~~-- 565 (674)
..+++|+.|+++++. +....+..+. .+++|+.|+| ++| .+.. ++..+.++++|++|+|++|.++.
T Consensus 102 ~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L-------~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV--VTDDCLELIAKSFKNFKVLVL-------SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp HHCTTCCEEEEESCB--CCHHHHHHHHHHCTTCCEEEE-------ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred HhCCCCCeEEeeCcE--EcHHHHHHHHHhCCCCcEEeC-------CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence 468899999999987 5554444454 7999999999 887 4554 66666689999999999998653
Q ss_pred ---ccccccCCCcccEEEeccccc-cc--cccccccccCccCCeeeeeee
Q 039885 566 ---LPETCCELFNLQTLEIRQRGY-YL--RRLPHGFGRLVNLRHLSEFVV 609 (674)
Q Consensus 566 ---lP~~i~~L~~L~~L~l~~~~~-~~--~~lP~~i~~L~~L~~L~l~~~ 609 (674)
++.....+++|++|++++| . .+ ..++.-+.++++|++|++..+
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCL-ASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTC-CSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hHHHHHHhhcCCcCcEEEeccc-CCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 4444557889999999998 3 11 223333456799999999544
No 171
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.42 E-value=2e-06 Score=91.94 Aligned_cols=179 Identities=17% Similarity=0.182 Sum_probs=103.4
Q ss_pred CceeechhhH---HHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCC-CCHHHHH
Q 039885 137 SDVCGRVEEK---STLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDP-FDEYRIA 212 (674)
Q Consensus 137 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~ 212 (674)
.++||.+..+ ..+...+... ....+.|+|++|+||||||+.+.+. ....| +.++.. ....+ .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 4689988777 6777777632 3467899999999999999999874 22222 222221 12221 1
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHH-HHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE-EEcCChh--H-Hh
Q 039885 213 KAIIEALEGSATNLVELNALLLRIN-ESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKIL-VTTRKET--V-AG 287 (674)
Q Consensus 213 ~~il~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~--v-a~ 287 (674)
+.++. ... ....+++.+|+||+++.......+.+...+..+ . ..+| .||.+.. + ..
T Consensus 92 r~~~~-----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~-v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REAIE-----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-T-ITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHH-----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-S-CEEEEEESSCGGGSSCHH
T ss_pred HHHHH-----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-c-eEEEecCCCCcccccCHH
Confidence 11111 111 112467889999999876655666666666542 2 2333 3555542 1 11
Q ss_pred hcCCCCeEeCCCCChHhhHHHHHHHhhcCCCC---CChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 288 MMESTDVISIKELSERECWSLFERIAFFNRPS---LECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 288 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~---~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
......++.+.+++.++...++.+.+...... ....--.+....|++.++|.+-.+..+..
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 12334588999999999999998876431110 01111234556688889998876665443
No 172
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.40 E-value=3.2e-06 Score=86.91 Aligned_cols=178 Identities=15% Similarity=0.103 Sum_probs=106.4
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|.+..++.+..++.... ...++.+.|++|+|||++|+.+++.. . ...+.++.+. .. .+..+.++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~-~~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSD-CK-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTT-CC-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEcccc-cC-HHHHHHHH
Confidence 469999999999999998432 33567888889999999999998742 1 1234445443 12 22222222
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC-hhhHHHHHHhhcCCCCCcEEEEEcCChh-----HHhhcC
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED-YNKWESFRRCLINGQRGSKILVTTRKET-----VAGMME 290 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IivTtR~~~-----va~~~~ 290 (674)
....... ...+++-+||+||++... .+..+.+...+.....+.++|+||.... +...
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR-- 156 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR-- 156 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH--
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh--
Confidence 2211100 013478899999998765 5566666666654445667888876543 2222
Q ss_pred CCCeEeCCCCChHhhHHH-------HHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 291 STDVISIKELSERECWSL-------FERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 291 ~~~~~~l~~L~~~~~~~L-------f~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
...+++.+++.++-.++ +...+...+..... .+....|++.++|.+-.+....
T Consensus 157 -~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 157 -CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp -SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHHHHH
T ss_pred -CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHHHHH
Confidence 24799999998874333 22222222211111 2456668888988876544433
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.36 E-value=3.9e-06 Score=86.82 Aligned_cols=179 Identities=13% Similarity=0.115 Sum_probs=107.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|++..++++..++...... ......|.|+|++|+|||+||+.+++. ....| +.++.+....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 46999999999999888642100 123456899999999999999999773 22222 2233322111
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC------------------CCcEEEE
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ------------------RGSKILV 278 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~Iiv 278 (674)
.......+.. ..+..+|+||++..........+...+.... ++..+|.
T Consensus 94 ------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 94 ------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1111111111 2356789999998776666666666654431 1245665
Q ss_pred EcCChh-HHhh-cC-CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHH
Q 039885 279 TTRKET-VAGM-ME-STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGS 348 (674)
Q Consensus 279 TtR~~~-va~~-~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 348 (674)
||.... +... .. ....+.+.+++.++...++.+.+...+... -.+....|++.+.|.|-.+..+..
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTC----EEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEE----CHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHCcCHHHHHHHHH
Confidence 555422 1111 11 135799999999999999988764333211 134456688899999966554443
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=2.5e-06 Score=93.52 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=108.5
Q ss_pred CceeechhhHHHHHHHhcCCC---------CC--CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCC
Q 039885 137 SDVCGRVEEKSTLKSKLLGEG---------SE--QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDP 205 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~---------~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 205 (674)
.+++|++..++++..++.... .+ ..+..+.+.|+|++|+||||+|+.+++.. .+ ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 469999999999999986411 00 01134689999999999999999998842 12 2334455544
Q ss_pred CCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH--HcCCCeEEEEEeCCCCCCh---hhHHHHHHhhcCCCCCcEEEEEc
Q 039885 206 FDEYRIAKAIIEALEGSATNLVELNALLLRINE--SIAREKFLLVLDDVWTEDY---NKWESFRRCLINGQRGSKILVTT 280 (674)
Q Consensus 206 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~--~l~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~IivTt 280 (674)
.... +....+....... ........... ...+++.+||||+++.... ..+..+...+... +..||+++
T Consensus 114 ~~~~-~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~ 186 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILIC 186 (516)
T ss_dssp CCHH-HHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEE
T ss_pred chHH-HHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEE
Confidence 3332 2222222211110 00000000000 1235788999999965322 2234555444432 23355544
Q ss_pred CCh---hHHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh-HHHHHHH
Q 039885 281 RKE---TVAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP-LAVKTIG 347 (674)
Q Consensus 281 R~~---~va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~ 347 (674)
... .+.........+.+.+++.++..+++...+...+...... ....|++.++|.+ -++..+.
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~----~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN----VIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT----HHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHcCCcHHHHHHHHH
Confidence 432 1222222244789999999999999887765433222222 3456888999955 4455443
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.31 E-value=1.5e-05 Score=78.93 Aligned_cols=188 Identities=15% Similarity=0.121 Sum_probs=99.8
Q ss_pred CceeechhhHHHHHHHhc---CCCCC---CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHH
Q 039885 137 SDVCGRVEEKSTLKSKLL---GEGSE---QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYR 210 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 210 (674)
.+++|.+..++++.+++. ..... .....+.+.|+|++|+|||++|+.+++.. ... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEechHHHHhh--
Confidence 468999988877766542 11100 01234568899999999999999998742 222 233444332110
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC------------h---hhHHHHHHhhcC--CCCC
Q 039885 211 IAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED------------Y---NKWESFRRCLIN--GQRG 273 (674)
Q Consensus 211 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~g 273 (674)
........+...+.........+|+|||++... . .....+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 000111122222333333467899999996531 1 122333333332 1234
Q ss_pred cEEEEEcCChhH-Hhh-cC---CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChH-HHHHHH
Q 039885 274 SKILVTTRKETV-AGM-ME---STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPL-AVKTIG 347 (674)
Q Consensus 274 s~IivTtR~~~v-a~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~ 347 (674)
..||.||..... ... .. -...+.+...+.++-.+++...+....... ........+++.+.|.+- .|..+.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ---SSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB---THHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc---chhhHHHHHHHHCCCCCHHHHHHHH
Confidence 566666654431 111 11 134778999999999999988764433211 112234678888888754 444443
No 176
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=3.4e-07 Score=94.42 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=53.7
Q ss_pred CCcccEEEeccccccccccccc-cccCccCCeeeeeeeCccCCCCCCCCCCCChhhccCcccCCCeeEEeccCCCCChhh
Q 039885 573 LFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVGITGSRNDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVDE 651 (674)
Q Consensus 573 L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~~ 651 (674)
+++|+.|+|++| .+..+|.. |.++.+|+.|++..+ +.. . ....+. ++.+|++.+.+.+ ++..+
T Consensus 225 ~~~L~~l~L~~n--~i~~I~~~aF~~~~~L~~l~l~~n-i~~----I--~~~aF~---~~~~L~~~l~l~~--~l~~I-- 288 (329)
T 3sb4_A 225 MPNLVSLDISKT--NATTIPDFTFAQKKYLLKIKLPHN-LKT----I--GQRVFS---NCGRLAGTLELPA--SVTAI-- 288 (329)
T ss_dssp CTTCCEEECTTB--CCCEECTTTTTTCTTCCEEECCTT-CCE----E--CTTTTT---TCTTCCEEEEECT--TCCEE--
T ss_pred cCCCeEEECCCC--CcceecHhhhhCCCCCCEEECCcc-cce----e--hHHHhh---CChhccEEEEEcc--cceEE--
Confidence 678999999988 68889876 899999999998443 222 1 222333 4444433455543 22221
Q ss_pred hhhccCCccCCCCeEEEeec
Q 039885 652 AKSAGLENKMNLLHLGLGFD 671 (674)
Q Consensus 652 ~~~~~L~~~~~L~~L~L~~~ 671 (674)
....+.++++|+.|+|+.|
T Consensus 289 -~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 289 -EFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp -CTTTTTTCTTEEEEEECSS
T ss_pred -chhhhhCCccCCEEEeCCC
Confidence 2256888999999998655
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.29 E-value=1.5e-05 Score=79.61 Aligned_cols=196 Identities=15% Similarity=0.158 Sum_probs=101.2
Q ss_pred CceeechhhHHHHHH-------HhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKS-------KLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
..++|.....++++. .+.... ......+.|+|++|+|||+||+.+++. .. ... +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~~-~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FPF-IKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CSE-EEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CCE-EEEeCHHH----
Confidence 357788777666665 332111 235678999999999999999999884 11 221 22222210
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC----------ChhhHHHHHHhhcC---CCCCcEE
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE----------DYNKWESFRRCLIN---GQRGSKI 276 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~I 276 (674)
+.+. ........+...+......+..+|+|||++.. .......+...+.. ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 00011112223333344567889999998431 11122334333332 2233456
Q ss_pred EEEcCChhHHhh---cCC-CCeEeCCCCCh-HhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCC------ChHHHHH
Q 039885 277 LVTTRKETVAGM---MES-TDVISIKELSE-RECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKG------LPLAVKT 345 (674)
Q Consensus 277 ivTtR~~~va~~---~~~-~~~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G------lPLai~~ 345 (674)
|.||........ .+. ...+++++++. ++...++.+.. . .. .+....|++.+.| ++-++..
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCCCccccHHHHHHH
Confidence 667776643322 122 34788999988 66666665531 1 11 2335568888877 3443333
Q ss_pred HHHHhccCCChHHHHHHHh
Q 039885 346 IGSLLRFKRSLRVWQSILD 364 (674)
Q Consensus 346 ~~~~L~~~~~~~~w~~~l~ 364 (674)
+-.. ........+..++.
T Consensus 242 l~~a-~~~~~~~~~~~~~~ 259 (272)
T 1d2n_A 242 IEMS-LQMDPEYRVRKFLA 259 (272)
T ss_dssp HHHH-TTSCGGGHHHHHHH
T ss_pred HHHH-hhhchHHHHHHHHH
Confidence 3332 22233455555554
No 178
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=1.7e-07 Score=98.19 Aligned_cols=131 Identities=12% Similarity=0.046 Sum_probs=98.3
Q ss_pred CCceeEEEEEcCCcCC--ccccccCCCCceEEEecCCCcccccchhHh----h-ccCCceeEEEecccccccccccccc-
Q 039885 471 KEKLRHSMLMLGFEAS--FPDSLLNAKKLRSFLISSPYDVFSSVLPRL----F-DQLTCLRTLKIVAHDRRWSRGMIRE- 542 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~-~~l~~Lr~L~L~~~~~~~~~~~l~~- 542 (674)
+..++.|++++|.+.. +......+++|+.|++++|. +....... + ...+.|+.|+| ++|.++.
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~--l~~~~~~~L~~~L~~~~~~L~~L~L-------s~n~l~~~ 170 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS--LGPEACKDLRDLLLHDQCQITTLRL-------SNNPLTAA 170 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC--CCHHHHHHHHHHHHSTTCCCCEEEC-------CSSCCHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC--CCHHHHHHHHHHHHhcCCccceeeC-------CCCCCChH
Confidence 3579999999998753 22222345689999999997 54322222 3 35688999999 9988754
Q ss_pred ----ccccccCCCCCcceeecCCCCc-----cccccccCCCcccEEEecccccccc-----ccccccccCccCCeeeeee
Q 039885 543 ----IPKEIEKLIHLRFLQLRDLMID-----ELPETCCELFNLQTLEIRQRGYYLR-----RLPHGFGRLVNLRHLSEFV 608 (674)
Q Consensus 543 ----lp~~i~~L~~Lr~L~L~~~~i~-----~lP~~i~~L~~L~~L~l~~~~~~~~-----~lP~~i~~L~~L~~L~l~~ 608 (674)
++..+..+++|++|+|++|.|+ .|+..+...++|++|+|++| .++ .++..+...++|++|++..
T Consensus 171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N--~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN--GAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS--CCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC--CCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 5666788999999999999986 35677888899999999999 454 3556677889999999977
Q ss_pred eCcc
Q 039885 609 VGIT 612 (674)
Q Consensus 609 ~~~~ 612 (674)
|.++
T Consensus 249 N~i~ 252 (372)
T 3un9_A 249 NELS 252 (372)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7643
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.27 E-value=5.6e-06 Score=84.38 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=91.0
Q ss_pred ceeechhhHHHHHHHhcCCC---------CCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 039885 138 DVCGRVEEKSTLKSKLLGEG---------SEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDE 208 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 208 (674)
+++|.+..++.|.+++.... -........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 48888888888876653110 000123456899999999999999988764221111111122333210
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC---------ChhhHHHHHHhhcCCCCCcEEEEE
Q 039885 209 YRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE---------DYNKWESFRRCLINGQRGSKILVT 279 (674)
Q Consensus 209 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IivT 279 (674)
.+..... ..........+... +.-+|+||+++.. .......+...+.....+..||+|
T Consensus 109 ---------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0101100 01111222222222 2349999999733 445566677777665566778888
Q ss_pred cCChhH----------HhhcCCCCeEeCCCCChHhhHHHHHHHhhc
Q 039885 280 TRKETV----------AGMMESTDVISIKELSERECWSLFERIAFF 315 (674)
Q Consensus 280 tR~~~v----------a~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 315 (674)
|..... ...+ ...+.+.+++.++...++...+..
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHHH
Confidence 764321 1111 258899999999999999887654
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.26 E-value=1.8e-05 Score=81.62 Aligned_cols=172 Identities=9% Similarity=0.030 Sum_probs=104.5
Q ss_pred hhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccc--------------------cccceEEEEEe
Q 039885 143 VEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI--------------------NHFGKRIWVCV 202 (674)
Q Consensus 143 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~v 202 (674)
++..+.+...+.... -...+.++|+.|+|||++|+.+.+...-. .|++. .++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEec
Confidence 344566666665332 34578999999999999999886531100 11221 22222
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEE
Q 039885 203 SDPFDEYRIAKAIIEALEGSATNLVELNALLLRINES----IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILV 278 (674)
Q Consensus 203 s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iiv 278 (674)
.. .......+++.+.+... ..+++-++|+|+++.......+.+...+.....++.+|+
T Consensus 82 ~~------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CT------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cc------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 10 00111222222211111 135678999999988777777888888876666677777
Q ss_pred EcCChh-HHh-hcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 279 TTRKET-VAG-MMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 279 TtR~~~-va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
+|.+.. +.. ..+....+.+.+++.++..+.+.... . .. .+....+++.++|.|..+..+.
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-MS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-CC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 766542 222 12334589999999999999988764 1 11 2334568899999998776554
No 181
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=1.6e-05 Score=82.19 Aligned_cols=184 Identities=12% Similarity=0.148 Sum_probs=107.1
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFG-KRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 215 (674)
.+++|.+..++.|...+... ..+.+.++|++|+||||+|+.++.... ...+. ...-++.+.......+ +++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 35789888888888888643 223388999999999999999987421 11111 1122222222222111 111
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh-HHh-hcCCCC
Q 039885 216 IEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET-VAG-MMESTD 293 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va~-~~~~~~ 293 (674)
+..+.... ..+.+.+-++|+|+++.......+.+...+.......++|++|.... +.. ......
T Consensus 97 i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 11111000 00123467899999977666666777766655455667777765432 111 112234
Q ss_pred eEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 294 VISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 294 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
.+.+.+++.++..+.+...+-..+.... .+....|++.++|.+--+..+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999998888776532222111 234566888999988755443
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.21 E-value=2.1e-05 Score=80.66 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=88.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIARE 243 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 243 (674)
...+.|+|++|+||||||+.+++..... .+ ..+++++ ..+...+...+... ...... ..+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~-----~~~~~~----~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG-----TINEFR----NMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT-----CHHHHH----HHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC-----cHHHHH----HHhc-C
Confidence 4568899999999999999998742111 11 2344443 33444444444321 111221 2222 3
Q ss_pred eEEEEEeCCCCCCh--hhHHHHHHhhcC-CCCCcEEEEEcCChh---------HHhhcCCCCeEeCCCCChHhhHHHHHH
Q 039885 244 KFLLVLDDVWTEDY--NKWESFRRCLIN-GQRGSKILVTTRKET---------VAGMMESTDVISIKELSERECWSLFER 311 (674)
Q Consensus 244 r~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~IivTtR~~~---------va~~~~~~~~~~l~~L~~~~~~~Lf~~ 311 (674)
..+|+|||+..... .....+...+.. ...|..||+||.... +...+.....+++.+ +.++...++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999966432 223334444321 124567888876432 222222335789999 99999999988
Q ss_pred HhhcCCCCCChhhHHHHHHHHHHHcCCChHHH
Q 039885 312 IAFFNRPSLECEQLEEFGRKIVSKCKGLPLAV 343 (674)
Q Consensus 312 ~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 343 (674)
.+...+...+ .+....|++.+ |.+-.+
T Consensus 178 ~~~~~~~~l~----~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 178 KLKEFNLELR----KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHTTCCCC----HHHHHHHHHHC-SSHHHH
T ss_pred HHHhcCCCCC----HHHHHHHHHhC-CCHHHH
Confidence 7754332222 23455677788 776543
No 183
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.18 E-value=4.9e-05 Score=77.87 Aligned_cols=184 Identities=18% Similarity=0.093 Sum_probs=103.2
Q ss_pred cCceeechhhHHHHHHHhcCC-------CCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGE-------GSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDE 208 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 208 (674)
-.+++|.+..++.|.+++... .. .....+.+.++|++|+|||+||+.+++. ....| +.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~----- 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS----- 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH-----
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH-----
Confidence 357999999999999877210 00 0223457899999999999999999874 22222 223221
Q ss_pred HHHHHHHHHHhhCCCCCcccHHH-HHHHHHHHcCCCeEEEEEeCCCCCCh-----------hhHHHHHHhhc---CCCCC
Q 039885 209 YRIAKAIIEALEGSATNLVELNA-LLLRINESIAREKFLLVLDDVWTEDY-----------NKWESFRRCLI---NGQRG 273 (674)
Q Consensus 209 ~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~g 273 (674)
++ . ... ....+. +...+...-..+..+|+||++..... .....+...+. ....+
T Consensus 86 -~l----~----~~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 -DL----V----SKW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HH----H----TTT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HH----h----hcc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 1 110 011111 12222222245678999999964211 11333444333 23345
Q ss_pred cEEEEEcCChh-----HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCC-ChHHHHHHH
Q 039885 274 SKILVTTRKET-----VAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKG-LPLAVKTIG 347 (674)
Q Consensus 274 s~IivTtR~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~ 347 (674)
..||.||.... +.. .-...+.+...+.++-.+++...+.......... ....|++.+.| .+-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKE----DYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHH----HHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHcCCCCHHHHHHHH
Confidence 56666776432 222 1234678888999999999988765433222222 34568888887 455555544
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.14 E-value=4.9e-06 Score=74.49 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=70.0
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIE 217 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 217 (674)
+++|+...++++.+.+..-.. ...-|.|+|.+|+|||++|+.+++.... ..... + ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~-v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGEF-V-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSCC-E-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCCE-E-EECCCCCcc---------
Confidence 588999999999988753221 1223789999999999999999875221 11222 2 555542221
Q ss_pred HhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCC
Q 039885 218 ALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRK 282 (674)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~ 282 (674)
..... .+... +.-.|+||++..........+...+.......+||.||..
T Consensus 66 ---------~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 01111 11111 2246899999887766677777777555555678877764
No 185
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.14 E-value=4.1e-06 Score=78.05 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=38.0
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999753 2345789999999999999999774
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.14 E-value=6e-05 Score=78.23 Aligned_cols=185 Identities=17% Similarity=0.078 Sum_probs=100.1
Q ss_pred CceeechhhHHHHHHHhcCC----C--CCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGE----G--SEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYR 210 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 210 (674)
.+++|.+..++.|.+.+... . .......+-|.|+|++|+|||+||+.+++.. ...| +.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEeeHH------H
Confidence 46999999999998876311 0 0001123458899999999999999999842 2221 222221 1
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChh-----------hHHHHHHhhcC---CCCCcEE
Q 039885 211 IAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYN-----------KWESFRRCLIN---GQRGSKI 276 (674)
Q Consensus 211 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~I 276 (674)
+. ..... .....+...+...-..+..+|+||+++..... ....+...+.. ...+..|
T Consensus 120 l~--------~~~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LV--------SKWMG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HH--------SCC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hh--------hhhcc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 11 11000 01111122222222457789999999653211 12333333321 2345556
Q ss_pred EEEcCChh-----HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCC-ChHHHHHHH
Q 039885 277 LVTTRKET-----VAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKG-LPLAVKTIG 347 (674)
Q Consensus 277 ivTtR~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~ 347 (674)
|.||.... +.. .-...+.+...+.++-.+++............. .....|++.+.| .|-.|..+.
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~----~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTK----EDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCH----HHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 66665432 222 223567888889999999998876433221122 234558888888 454555554
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.13 E-value=5e-05 Score=78.98 Aligned_cols=188 Identities=12% Similarity=0.063 Sum_probs=102.0
Q ss_pred CceeechhhHHHHHHHhcCC----CC--CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGE----GS--EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYR 210 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 210 (674)
.+++|.+..+++|.+.+... .. ......+.|.|+|++|+|||+||+.+++.. .. ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhc---
Confidence 46999999999998877420 00 001234578999999999999999998742 11 123444432111
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-----------ChhhHHHHHHhhcCC----CCCcE
Q 039885 211 IAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-----------DYNKWESFRRCLING----QRGSK 275 (674)
Q Consensus 211 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~~----~~gs~ 275 (674)
.... .........+...-..+..+|+||+++.. .......+...+... ..+..
T Consensus 156 -----------~~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 156 -----------KWVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp -----------SSTT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred -----------cccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 0000 00111111122222356789999998321 011233444444321 23445
Q ss_pred EEEEcCChh-HHhhc--CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCC-ChHHHHHHHH
Q 039885 276 ILVTTRKET-VAGMM--ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKG-LPLAVKTIGS 348 (674)
Q Consensus 276 IivTtR~~~-va~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~ 348 (674)
||.||.... +...+ .....+.+...+.++..+++...+........ .+....|++.+.| .|-.+..+..
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 665665432 11111 12246788888999988888877643322111 2345668888888 5666666543
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.12 E-value=0.00014 Score=74.39 Aligned_cols=188 Identities=18% Similarity=0.090 Sum_probs=101.3
Q ss_pred cCceeechhhHHHHHHHhcCC----C--CCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGE----G--SEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
-.+++|.+..++.|.+.+... . .+.....+.|.++|++|+|||+||+.+++... ... .+.+..+.-.+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~~-- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLVS-- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHHh--
Confidence 357999999888888766310 0 00012346789999999999999999997420 111 22333332110
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC-------hh----hHHHHHHhhcC---CCCCcE
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED-------YN----KWESFRRCLIN---GQRGSK 275 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~----~~~~l~~~l~~---~~~gs~ 275 (674)
... ......+...+...-..++.+|+||+++... .. ....+...+.. ...+..
T Consensus 85 ------------~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 ------------KWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ------------SSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ------------hhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 000 0111112222222223577899999996420 01 12233333322 234455
Q ss_pred EEEEcCChh-----HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCC-hHHHHHHHH
Q 039885 276 ILVTTRKET-----VAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGL-PLAVKTIGS 348 (674)
Q Consensus 276 IivTtR~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~~ 348 (674)
||.||.... +.. .-...+.+...+.++-.+++............ ......|++.+.|. +-.|..+..
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555665332 222 22346788888888888998876633222112 23345688899887 544655543
No 189
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.11 E-value=5.5e-06 Score=77.13 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=64.7
Q ss_pred hhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCC
Q 039885 143 VEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGS 222 (674)
Q Consensus 143 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 222 (674)
...++.+.+++..-. ......+.|+|++|+||||||+.+++.......+. ++++ +..++...+.......
T Consensus 20 ~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 20 NRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCc
Confidence 344455555554322 12356799999999999999999987432122222 2233 3445555555444332
Q ss_pred CCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHH--HHHHhhcCC-CCCcEEEEEcCC
Q 039885 223 ATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWE--SFRRCLING-QRGSKILVTTRK 282 (674)
Q Consensus 223 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~IivTtR~ 282 (674)
... .....+. +.-+|||||++....+.|. .+...+... ..|..||+||..
T Consensus 90 ~~~-----~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 90 KDT-----KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CCS-----HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hHH-----HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 211 2222221 4568999999743223332 333333221 256788888863
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.11 E-value=0.00015 Score=73.28 Aligned_cols=185 Identities=15% Similarity=0.110 Sum_probs=99.2
Q ss_pred cCceeechhhHHHHHHHhcCCC------CCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEG------SEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
-.+++|.+..++.+.+++.... .......+.+.|+|++|+||||+|+.+++.. ... .+.++.+.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCE---EEEEESTTTSS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCC---eEEeeHHHHhh--
Confidence 3479999999999988773210 0001124578999999999999999998742 111 23344433111
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHH-HHHHHHcCCCeEEEEEeCCCCCC-----------hhhHHHHHHhhc---CC--CC
Q 039885 210 RIAKAIIEALEGSATNLVELNALL-LRINESIAREKFLLVLDDVWTED-----------YNKWESFRRCLI---NG--QR 272 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~---~~--~~ 272 (674)
... ....... ..+......+..+|+||++.... ......+...+. .. +.
T Consensus 93 ------------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 ------------KYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp ------------SSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ------------ccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 000 0111111 22222223567899999985421 111122222222 11 13
Q ss_pred CcEEEEEcCChh-----HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChH-HHHHH
Q 039885 273 GSKILVTTRKET-----VAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPL-AVKTI 346 (674)
Q Consensus 273 gs~IivTtR~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 346 (674)
+..||.||.... +... ....+.+...+.++...++...+........ .+....|++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 355666666532 2222 1246777777888888888776543222111 2345568888999875 55444
Q ss_pred H
Q 039885 347 G 347 (674)
Q Consensus 347 ~ 347 (674)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.97 E-value=0.00022 Score=76.39 Aligned_cols=189 Identities=17% Similarity=0.115 Sum_probs=100.0
Q ss_pred cCceeechhhHHHHHHHhcCC----C--CCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGE----G--SEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
-.+++|.+..++.|.+.+... . .......+.|.|+|++|+|||+||+.+++.. ...-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH---
Confidence 357999999999998876310 0 0001234678999999999999999999842 111233333221
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC-------h----hhHHHHHHhhcC---CCCCcE
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED-------Y----NKWESFRRCLIN---GQRGSK 275 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~----~~~~~l~~~l~~---~~~gs~ 275 (674)
+. ....+.. ......+... .-..+..+|+||+++... . .....+...+.. ...+..
T Consensus 204 -l~----~~~~g~~--~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -LV----SKWLGES--EKLVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp -------------C--CCTHHHHHHH---HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HH----hhhcchH--HHHHHHHHHH---HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11 1111111 1122222222 223467899999996431 0 112233333322 134556
Q ss_pred EEEEcCChhHH-hh-c-CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCC-ChHHHHHHH
Q 039885 276 ILVTTRKETVA-GM-M-ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKG-LPLAVKTIG 347 (674)
Q Consensus 276 IivTtR~~~va-~~-~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~ 347 (674)
||.||...... .. . .....+.+...+.++-..+|...+......... .....|++.+.| .+-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~----~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTE----ADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCH----HHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 66676543211 11 1 123467788888888888888776332211112 234568888888 454555544
No 192
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=1.5e-06 Score=85.89 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=62.4
Q ss_pred hccCCceeEEEeccccccccccccccc---cccccCCCCCcceeecCCCCccccccccCCC--cccEEEecccccccccc
Q 039885 517 FDQLTCLRTLKIVAHDRRWSRGMIREI---PKEIEKLIHLRFLQLRDLMIDELPETCCELF--NLQTLEIRQRGYYLRRL 591 (674)
Q Consensus 517 ~~~l~~Lr~L~L~~~~~~~~~~~l~~l---p~~i~~L~~Lr~L~L~~~~i~~lP~~i~~L~--~L~~L~l~~~~~~~~~l 591 (674)
..++++|+.|+| ++|.++++ |..++.+++|++|+|++|.|+.+ ..+..+. +|++|+|++| ...+.+
T Consensus 166 ~~~l~~L~~L~L-------s~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~N-pl~~~~ 236 (267)
T 3rw6_A 166 EENIPELLSLNL-------SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN-SLCDTF 236 (267)
T ss_dssp HHHCTTCCEEEC-------TTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTS-TTGGGC
T ss_pred HhhCCCCCEEEC-------CCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCC-cCcccc
Confidence 367889999999 99988764 46677899999999999998877 3355555 8999999999 544555
Q ss_pred cc-------ccccCccCCeeee
Q 039885 592 PH-------GFGRLVNLRHLSE 606 (674)
Q Consensus 592 P~-------~i~~L~~L~~L~l 606 (674)
|. .+..+++|+.|+-
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESS
T ss_pred CcchhHHHHHHHHCcccCeECC
Confidence 52 3678888888876
No 193
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.97 E-value=6e-06 Score=73.70 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=63.0
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIE 217 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 217 (674)
+++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... -++.+....-.....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~~----- 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDMP----- 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHCH-----
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHhh-----
Confidence 589999998888887753211 112377999999999999999987422 222222111011110
Q ss_pred HhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC-CCCcEEEEEcC
Q 039885 218 ALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING-QRGSKILVTTR 281 (674)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IivTtR 281 (674)
..+.... +.-.|+||++..........+...+... ..+.++|+||.
T Consensus 68 ----------------~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 68 ----------------MELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp ----------------HHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred ----------------hhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 1111111 2236889999887666666666665543 34567888775
No 194
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=6.4e-05 Score=76.00 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=94.3
Q ss_pred chhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc-cc-cccceEEEEEeCC-CCCHHHHHHHHHHH
Q 039885 142 RVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND-VI-NHFGKRIWVCVSD-PFDEYRIAKAIIEA 218 (674)
Q Consensus 142 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~-~~F~~~~wv~vs~-~~~~~~~~~~il~~ 218 (674)
-++.++.+...+... ..+...++|++|+||||+|+.+.+... .. .+.+. .++..+. ...+.. .+++.+.
T Consensus 2 ~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 2 AKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp --CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHH
Confidence 345566777777532 357899999999999999999876311 11 23333 4444332 222222 2334433
Q ss_pred hhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh-hHHhhcCCCCeEeC
Q 039885 219 LEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE-TVAGMMESTDVISI 297 (674)
Q Consensus 219 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~~~~~~~~l 297 (674)
+.... ..+++-++|+|+++.......+.+...+-.....+.+|++|.+. .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32211 13467789999998887778888888887766677777776543 333333334 9999
Q ss_pred CCCChHhhHHHHHHHh
Q 039885 298 KELSERECWSLFERIA 313 (674)
Q Consensus 298 ~~L~~~~~~~Lf~~~a 313 (674)
.++++++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 195
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.92 E-value=0.00022 Score=74.99 Aligned_cols=188 Identities=12% Similarity=0.114 Sum_probs=98.6
Q ss_pred cCceeechhhHHHHHHHhcCC----C--CCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGE----G--SEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
-.+++|.+..++.|.+++... . .......+.|.|+|++|+|||+||+.+++. ... ..+.++++.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcc-
Confidence 357999999999999887311 0 000112457899999999999999999874 111 1223333321110
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-----------ChhhHHHHHHhhcC----CCCCc
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-----------DYNKWESFRRCLIN----GQRGS 274 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~----~~~gs 274 (674)
. . + .....+...+...-..+..+|+||+++.. .......+...+.. .....
T Consensus 188 -~-------~-g-----~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 -Y-------V-G-----EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred -c-------c-c-----hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 0 0 00111111122222335679999999532 11112223332221 12234
Q ss_pred EEEEEcCChh-HHhh-cCC-CCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChH-HHHHHH
Q 039885 275 KILVTTRKET-VAGM-MES-TDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPL-AVKTIG 347 (674)
Q Consensus 275 ~IivTtR~~~-va~~-~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~ 347 (674)
.||.||.... +... ... ...+.+...+.++...++...+........ .+....|++.+.|..- +|..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5555665422 1111 111 246889999999999999887644332222 2345668888888554 555543
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.88 E-value=0.00018 Score=72.74 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=99.9
Q ss_pred cCceeechhhHHHHHHHhcCCCC-------CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGS-------EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDE 208 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 208 (674)
-.+++|.+..+++|.+++...-. ..-...+.+.|+|++|+|||+||+.+++.. ... ++.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~-----~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCE-----EEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CCC-----EEEEE----h
Confidence 34699999988888887642100 001234578999999999999999999842 222 22222 2
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC--------------hhhHHHHHHhhcC--CCC
Q 039885 209 YRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED--------------YNKWESFRRCLIN--GQR 272 (674)
Q Consensus 209 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~ 272 (674)
.++. ....+... .. +...+.........+|+||++.... ......+...+.. ...
T Consensus 83 ~~l~----~~~~g~~~--~~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELL----TMWFGESE--AN---VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHH----HHHHTTCT--TH---HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHH----hhhcCchH--HH---HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 2222 22222211 11 2222333334567899999995311 0113444444432 223
Q ss_pred CcEEEEEcCChh-HHhh-cC---CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHH
Q 039885 273 GSKILVTTRKET-VAGM-ME---STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLA 342 (674)
Q Consensus 273 gs~IivTtR~~~-va~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 342 (674)
+..||.||.... +... .. -...+.+...+.++-.+++....-.... .....+. .+++.+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCHH----HHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchHH----HHHHHcCCCCHH
Confidence 556777776543 2111 12 2347889999999888888776533221 1112333 366677777644
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.83 E-value=2e-05 Score=81.84 Aligned_cols=135 Identities=15% Similarity=0.103 Sum_probs=77.0
Q ss_pred CCCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhh--ccCCceeEEEecccccccccc-cccccccc
Q 039885 470 PKEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLF--DQLTCLRTLKIVAHDRRWSRG-MIREIPKE 546 (674)
Q Consensus 470 ~~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~~~~~~~-~l~~lp~~ 546 (674)
..+.++.|.+.++....++. + .+++|+.|.+..+. +.......+ ..+++|+.|+|........++ .+..+...
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 34578888887763223443 3 37788888887665 322112223 367888888872100000001 12222222
Q ss_pred c--cCCCCCcceeecCCCCcc-ccccc---cCCCcccEEEeccccccccc-----cccccccCccCCeeeeeeeC
Q 039885 547 I--EKLIHLRFLQLRDLMIDE-LPETC---CELFNLQTLEIRQRGYYLRR-----LPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 547 i--~~L~~Lr~L~L~~~~i~~-lP~~i---~~L~~L~~L~l~~~~~~~~~-----lP~~i~~L~~L~~L~l~~~~ 610 (674)
+ +.+++|++|+|++|.+.. .+..+ ..+++|++|+|+.| .++. ++.++.++++|++|++..|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n--~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG--VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS--CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC--CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 2 246788888888887652 22222 24678888888877 3433 56666777888888886554
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.80 E-value=1.6e-05 Score=75.45 Aligned_cols=125 Identities=19% Similarity=0.166 Sum_probs=63.3
Q ss_pred ceeech----hhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 138 DVCGRV----EEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 138 ~~vGr~----~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
+|++.+ ..++.+.+++..... ......+.|+|++|+|||+||+.+++.. ......+++++++ .+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELFR 95 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHHH
Confidence 455543 344455555543321 1122678899999999999999998843 2233345566543 3444
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHH--HHH-hhcCC-CCCcEEEEEcCC
Q 039885 214 AIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWES--FRR-CLING-QRGSKILVTTRK 282 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~IivTtR~ 282 (674)
.+....... ........+.. .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 96 ~~~~~~~~~-----~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 96 ELKHSLQDQ-----TMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHC---C-----CCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhccc-----hHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 443322111 12233333322 2399999996643222211 211 12111 234578888864
No 199
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.79 E-value=0.00024 Score=76.63 Aligned_cols=185 Identities=12% Similarity=0.107 Sum_probs=101.3
Q ss_pred CceeechhhHHHHHHHhcCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSE-------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.+++|.+..+++|.+++...-.. .....+-|.|+|++|+|||++|+.+++.. ...| +.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--SSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--CCCE---EEEEch------
Confidence 46899999999998877532000 00133458899999999999999998742 2222 233321
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC--------C---hhhHHHHHHhhcC--CCCCcEE
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE--------D---YNKWESFRRCLIN--GQRGSKI 276 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~---~~~~~~l~~~l~~--~~~gs~I 276 (674)
.+ . .... ......+...+.....++..+|+||+++.. . ......+...+.. ...+.+|
T Consensus 273 ~l----~----~~~~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 EI----M----SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp HH----H----TSCT-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred Hh----h----hhhc-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11 1 1111 111222333344444567789999998321 1 1122334444432 2234556
Q ss_pred EEEcCChh-HHhhc----CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCC-hHHHHHH
Q 039885 277 LVTTRKET-VAGMM----ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGL-PLAVKTI 346 (674)
Q Consensus 277 ivTtR~~~-va~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 346 (674)
|.||.... +...+ .-...+.+...+.++-.+++..++..... .....+. ++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l~----~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLE----QVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCHH----HHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhHH----HHHHHccCCcHHHHHHH
Confidence 66666442 21111 12346889999999999999887643221 1122333 467777775 5445544
No 200
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=1.2e-05 Score=75.20 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=72.5
Q ss_pred ccccCCCCceEEEecCC-Cccccc----chhHhhccCCceeEEEecccccccccccccc-----ccccccCCCCCcceee
Q 039885 489 DSLLNAKKLRSFLISSP-YDVFSS----VLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-----IPKEIEKLIHLRFLQL 558 (674)
Q Consensus 489 ~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-----lp~~i~~L~~Lr~L~L 558 (674)
..+...+.|++|++++| . +.. .+...+...+.|++|+| ++|.+.. +...+...++|++|+|
T Consensus 30 ~~l~~~~~L~~L~L~~n~~--i~~~g~~~l~~~L~~~~~L~~L~L-------s~n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMN--IPVPTLKACAEALKTNTYVKKFSI-------VGTRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHHTTCTTCCEEECTTCTT--CCHHHHHHHHHHHTTCCSCCEEEC-------TTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHhcCCCCCEEEecCCCC--CCHHHHHHHHHHHHhCCCcCEEEC-------cCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 34556777888888777 5 321 23445666777888888 7777643 3455556677888888
Q ss_pred cCCCCcc-----ccccccCCCcccEEEe--ccccccccc-----cccccccCccCCeeeeeeeC
Q 039885 559 RDLMIDE-----LPETCCELFNLQTLEI--RQRGYYLRR-----LPHGFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 559 ~~~~i~~-----lP~~i~~L~~L~~L~l--~~~~~~~~~-----lP~~i~~L~~L~~L~l~~~~ 610 (674)
++|.|+. |...+...++|++|+| ++| .++. +...+...++|++|++..|.
T Consensus 101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N--~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQ--PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS--CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC--CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 8887763 5666777777888888 666 3332 44455666778888775544
No 201
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.77 E-value=0.00012 Score=74.53 Aligned_cols=136 Identities=15% Similarity=0.231 Sum_probs=74.4
Q ss_pred ceeechhhHHHHHHHhcCCC---CCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEG---SEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 214 (674)
.++|.+..++.+...+.... .........+.++|++|+|||++|+.++... ...-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccccc-cHHH
Confidence 57899988888888775321 0002234689999999999999999998742 1111123455554332221 1111
Q ss_pred HHHHhhCCCC--CcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcC
Q 039885 215 IIEALEGSAT--NLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVTTR 281 (674)
Q Consensus 215 il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR 281 (674)
+ ++.... .......+...+. ....-+++||++..........+...+..+. ....||+||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 111110 0000112222222 1234699999998877677777776664321 2334777766
Q ss_pred C
Q 039885 282 K 282 (674)
Q Consensus 282 ~ 282 (674)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 202
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00039 Score=73.14 Aligned_cols=179 Identities=17% Similarity=0.114 Sum_probs=91.1
Q ss_pred CceeechhhHHHHHHHhcCCC--C-----CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEG--S-----EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~--~-----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.++.|.++.+++|.+.+...- + ..-...+-|.++|++|.|||+||+++++. ....| +.|..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc--
Confidence 468899988888877653210 0 00224567899999999999999999984 22222 3344333111
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCC----------C-Ch---hhHHHHHHhhcC--CCCC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWT----------E-DY---NKWESFRRCLIN--GQRG 273 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~----------~-~~---~~~~~l~~~l~~--~~~g 273 (674)
... ......+...+...-...+++|++|+++. . +. .....+...+.. ...|
T Consensus 245 ------------~~~-Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 ------------KYL-GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp ------------SSC-SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred ------------ccc-chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 000 01111122222222245679999999842 0 10 112333333332 2345
Q ss_pred cEEEEEcCChh-----HHhhcCCCCeEeCCCCChHhh-HHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 274 SKILVTTRKET-----VAGMMESTDVISIKELSEREC-WSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 274 s~IivTtR~~~-----va~~~~~~~~~~l~~L~~~~~-~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
..||.||-... +.+...-...+++..++..+. ..+|..+.-. ......-++. .|++.+.|.-
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-~~l~~~~dl~----~lA~~t~G~s 379 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-MSLAPEADLD----SLIIRNDSLS 379 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-SCBCTTCCHH----HHHHHTTTCC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-CCCCcccCHH----HHHHHCCCCC
Confidence 56666775433 211111233677776765544 4555554422 2211222344 4777777753
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.75 E-value=0.0001 Score=85.83 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=79.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc---ccccc-c-eEEEEEeCCCCCHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND---VINHF-G-KRIWVCVSDPFDEYRI 211 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~-~~~wv~vs~~~~~~~~ 211 (674)
.++|||+.+++++++.|.... ...+.++|++|+||||+|+.+++... +.... . ..+.++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 358999999999999997532 23468999999999999999987421 10011 1 223333322100
Q ss_pred HHHHHHHhhCCCCCcccHHH-HHHHHHHHcC-CCeEEEEEeCCCCCC--------hhhHHHHHHhhcCCCCCcEEEEEcC
Q 039885 212 AKAIIEALEGSATNLVELNA-LLLRINESIA-REKFLLVLDDVWTED--------YNKWESFRRCLINGQRGSKILVTTR 281 (674)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IivTtR 281 (674)
+.. ...+... +...+...-. +++.+|++|++.... .+....+...+..+ +..+|.+|.
T Consensus 240 ---------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEEC
T ss_pred ---------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecC
Confidence 000 0011121 2222222222 467899999996532 11122344444332 334555554
Q ss_pred ChhHH-----hh-cCCCCeEeCCCCChHhhHHHHHHH
Q 039885 282 KETVA-----GM-MESTDVISIKELSERECWSLFERI 312 (674)
Q Consensus 282 ~~~va-----~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
..... .. ......+.+++++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 33221 11 122346899999999999988644
No 204
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.75 E-value=7.5e-05 Score=78.86 Aligned_cols=121 Identities=11% Similarity=0.112 Sum_probs=68.2
Q ss_pred CCceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccc-cccC
Q 039885 471 KEKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPK-EIEK 549 (674)
Q Consensus 471 ~~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~-~i~~ 549 (674)
+.+++.+.+..|.+..+|.......+|+.+.+..+ +..+-...|.++++|+.+++ ..+ ++.++. .|.+
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~---l~~I~~~aF~~~~~L~~l~l-------~~~-l~~I~~~aF~~ 247 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT---LKEIGSQAFLKTSQLKTIEI-------PEN-VSTIGQEAFRE 247 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCCEEC-------CTT-CCEECTTTTTT
T ss_pred cccCCeeecCCCcceEechhhEeecccCEEEeCCc---hheehhhHhhCCCCCCEEec-------CCC-ccCcccccccc
Confidence 45666777766666666554444567777777643 33444556777777777777 442 444432 2333
Q ss_pred CCCCcceeecCCCCccccc-cccCCCcccEEEecccccccc-----cccc-ccccCccCCeeee
Q 039885 550 LIHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLR-----RLPH-GFGRLVNLRHLSE 606 (674)
Q Consensus 550 L~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~-----~lP~-~i~~L~~L~~L~l 606 (674)
.+|+.+.| .+.++.++. .+.++.+|+.+++.++ .+. .++. .|.++++|+.+.+
T Consensus 248 -~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~--~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 248 -SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS--TFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp -CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS--CCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred -CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc--cccCCcccEECHHHhhCCccCCeEEe
Confidence 55666666 233555543 3556666666666655 222 3433 3666666666665
No 205
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00077 Score=69.92 Aligned_cols=179 Identities=15% Similarity=0.037 Sum_probs=97.3
Q ss_pred CceeechhhHHHHHHHhcCCC--C-----CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEG--S-----EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~--~-----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.++.|.++.+++|.+.+.-+- + ..-...+-|.++|++|.|||.||+++++. ....| +.|..+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELV--- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhh---
Confidence 468899988888877653210 0 00223466889999999999999999984 22222 334433211
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC-----------h---hhHHHHHHhhcC--CCCC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED-----------Y---NKWESFRRCLIN--GQRG 273 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~---~~~~~l~~~l~~--~~~g 273 (674)
.... ......+.......-...+++|++|+++... . .....+...+.. ...+
T Consensus 220 -----------sk~v-Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 220 -----------QKYI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -----------CSST-THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -----------cccc-chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 1100 0111112222222224578999999986421 0 012333333432 2344
Q ss_pred cEEEEEcCChh-----HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 274 SKILVTTRKET-----VAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 274 s~IivTtR~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
..||.||-... +.+...-...+.+..-+.++-.++|..+.-.... ...-++. +|++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl~----~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINLR----KVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCHH----HHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCHH----HHHHHCCCCC
Confidence 45666665433 2222123568889888888888888776533221 1222344 4778887754
No 206
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.75 E-value=5.6e-05 Score=81.56 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=77.6
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc---ccccc-ce-EEEEEeCCCCCHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND---VINHF-GK-RIWVCVSDPFDEYRI 211 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~-~~wv~vs~~~~~~~~ 211 (674)
..+|||+.+++.+...|.... ..-+.++|++|+|||++|+.++.... +-... +. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 359999999999999997532 23467999999999999999977311 00001 11 1122222
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh---
Q 039885 212 AKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVAGM--- 288 (674)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~--- 288 (674)
....+. .......+.. ..-..++.+|++|. ..+....+...+.. ...++|.+|........
T Consensus 246 -----~~~~g~--~e~~~~~~~~---~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -----TKYRGE--FEDRLKKVMD---EIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHHHHHH---HHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred -----ccccch--HHHHHHHHHH---HHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 000000 0011222222 22235678899991 12222334333322 23456665554431111
Q ss_pred ----cCCCCeEeCCCCChHhhHHHHHHHh
Q 039885 289 ----MESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 289 ----~~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
.....++.+.+.+.++...++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1112379999999999999998754
No 207
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.65 E-value=0.00015 Score=76.48 Aligned_cols=106 Identities=9% Similarity=0.170 Sum_probs=60.7
Q ss_pred cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccCCCCCcceeecCCCCccccc
Q 039885 490 SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEKLIHLRFLQLRDLMIDELPE 568 (674)
Q Consensus 490 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lP~ 568 (674)
.+.++++|+.+.+..+. +..+....|. ...|+.+.| .. .+..++ ..|.++.+|+.+.|..+ ++.++.
T Consensus 175 aF~~c~~L~~l~l~~n~--l~~I~~~aF~-~~~L~~l~l-------p~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~ 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTK--ITKLPASTFV-YAGIEEVLL-------PV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ 242 (401)
T ss_dssp TTTTCTTCCEEECTTSC--CSEECTTTTT-TCCCSEEEC-------CT-TCCEECTTTTTTCTTCCCEECCTT-CCEECT
T ss_pred HhhCcccCCeeecCCCc--ceEechhhEe-ecccCEEEe-------CC-chheehhhHhhCCCCCCEEecCCC-ccCccc
Confidence 34455555555555544 3333333343 355555555 42 244443 34556667777777653 566655
Q ss_pred cccCCCcccEEEecccccccccccc-ccccCccCCeeeeeeeC
Q 039885 569 TCCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSEFVVG 610 (674)
Q Consensus 569 ~i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l~~~~ 610 (674)
..-.-.+|+.+.+.++ +..++. .|.++++|+.+.+..+.
T Consensus 243 ~aF~~~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 243 EAFRESGITTVKLPNG---VTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp TTTTTCCCSEEEEETT---CCEECTTTTTTCTTCCEEEEESSC
T ss_pred cccccCCccEEEeCCC---ccEEChhHhhCCCCCCEEEeCCcc
Confidence 4322267777777543 666754 48899999999885543
No 208
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.64 E-value=9.7e-05 Score=73.28 Aligned_cols=132 Identities=15% Similarity=0.125 Sum_probs=68.0
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|.+..+.++.+.+..... ....|.|+|.+|+|||++|+.+++.... ... ..+.++++.. .. +.+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~~-~~~-~~~~v~~~~~-~~-~~~~~-- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSSR-WQG-PFISLNCAAL-NE-NLLDS-- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTSTT-TTS-CEEEEEGGGS-CH-HHHHH--
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcCc-cCC-CeEEEecCCC-Ch-hHHHH--
Confidence 3589999998888876653221 1235789999999999999999875221 111 2344555542 22 22211
Q ss_pred HHhhCCCCCc-ccH-HHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC-----------CCCcEEEEEcCC
Q 039885 217 EALEGSATNL-VEL-NALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING-----------QRGSKILVTTRK 282 (674)
Q Consensus 217 ~~l~~~~~~~-~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IivTtR~ 282 (674)
.+.+..... ... ......+.. ...-+|+||++..........+...+..+ ..+.+||.||..
T Consensus 76 -~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 -ELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp -HHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred -HhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 121211000 000 000001111 12348999999877666666666555432 134578887765
No 209
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.62 E-value=0.001 Score=68.28 Aligned_cols=177 Identities=16% Similarity=0.202 Sum_probs=96.0
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF-DEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i 215 (674)
.+++|.+..++.+...+..... .......+.++|++|+||||||+.++... ...|. ..-.... ...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~~----~~sg~~~~~~~------ 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASEL--QTNIH----VTSGPVLVKQG------ 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHH--TCCEE----EEETTTCCSHH------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCEE----EEechHhcCHH------
Confidence 3588988777777666642100 01134568999999999999999998742 11111 1111111 111
Q ss_pred HHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC--------C----------CcEEE
Q 039885 216 IEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ--------R----------GSKIL 277 (674)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~----------gs~Ii 277 (674)
.+...+ ..+. ++.++++|++........+.+...+.... . ...++
T Consensus 92 ---------------~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 92 ---------------DMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ---------------HHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ---------------HHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 111111 1222 34477889886554434444443332211 0 11222
Q ss_pred -EEcCChhHHhhcC-C-CCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHH
Q 039885 278 -VTTRKETVAGMME-S-TDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIG 347 (674)
Q Consensus 278 -vTtR~~~va~~~~-~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 347 (674)
.|++...+...+. . .-...+++.+.++-.+++.+.+-..+... -.+.+..|++.+.|.|-.+..+.
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~----~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI----EDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHhcCCChHHHHHHH
Confidence 3444333221111 1 23588999999999999988764322211 13457789999999997665443
No 210
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.60 E-value=0.0005 Score=73.93 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=60.9
Q ss_pred EEEEeCCCCCChhhHHHHHHhhcCCCCCcEEE-EE---------cC----Chh-HHhhcCCCCeEeCCCCChHhhHHHHH
Q 039885 246 LLVLDDVWTEDYNKWESFRRCLINGQRGSKIL-VT---------TR----KET-VAGMMESTDVISIKELSERECWSLFE 310 (674)
Q Consensus 246 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii-vT---------tR----~~~-va~~~~~~~~~~l~~L~~~~~~~Lf~ 310 (674)
++++|++...+.+.++.+...+...... .+| .| |. ... ..+..+....+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999888777888888777665444 344 44 32 101 01111223457999999999999998
Q ss_pred HHhhcCCCCCChhhHHHHHHHHHHHc-CCChHHHHHHH
Q 039885 311 RIAFFNRPSLECEQLEEFGRKIVSKC-KGLPLAVKTIG 347 (674)
Q Consensus 311 ~~a~~~~~~~~~~~l~~~~~~I~~~c-~GlPLai~~~~ 347 (674)
..+-..+.... .+....|++.+ .|.|..+..+.
T Consensus 377 ~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 377 IRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHHHH
Confidence 77632222111 23455677777 78887665543
No 211
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.59 E-value=0.00041 Score=70.25 Aligned_cols=51 Identities=20% Similarity=0.344 Sum_probs=36.9
Q ss_pred CceeechhhHHHHHHHhcCC--CCC------CCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 137 SDVCGRVEEKSTLKSKLLGE--GSE------QQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..++|.+..++.+...+... ... .......+.++|++|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998877530 000 0012345889999999999999999874
No 212
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.59 E-value=0.00047 Score=79.34 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=85.3
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc---cc-cccceEEEE-EeCCCCCHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND---VI-NHFGKRIWV-CVSDPFDEYRI 211 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~-~~F~~~~wv-~vs~~~~~~~~ 211 (674)
..++||+.+++++.+.|.... ..-+.|+|++|+|||++|+.++.... +. ..+...+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 358999999999999997542 23468999999999999999976321 11 112333321 11110
Q ss_pred HHHHHHHhhCCCCCcccHHH-HHHHHHHHcCCCeEEEEEeCCCCC--------ChhhH-HHHHHhhcCCCCCcEEEEEcC
Q 039885 212 AKAIIEALEGSATNLVELNA-LLLRINESIAREKFLLVLDDVWTE--------DYNKW-ESFRRCLINGQRGSKILVTTR 281 (674)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~--------~~~~~-~~l~~~l~~~~~gs~IivTtR 281 (674)
+.+. ......+. +...+...-..+..+|++||+... ..... ..+...+. ..+.++|.+|.
T Consensus 254 -------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_dssp --------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEEC
T ss_pred -------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeC
Confidence 0001 11112222 222233333446789999999753 11222 22222222 22345666665
Q ss_pred ChhHHhhc-------CCCCeEeCCCCChHhhHHHHHHHh
Q 039885 282 KETVAGMM-------ESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 282 ~~~va~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
........ .....+.+...+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 44322111 112368899999999988887654
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.57 E-value=0.0013 Score=64.58 Aligned_cols=186 Identities=13% Similarity=0.082 Sum_probs=93.9
Q ss_pred cCceeechhhHHHHHHHh---cCCCCC---CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 136 VSDVCGRVEEKSTLKSKL---LGEGSE---QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
-.+++|.+..++++.+.+ ...... .....+-+.|+|++|+||||||+.+++.. ...| +.+..+.-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCCE---EEECSCSSTT--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCCE---EEEeHHHHHH--
Confidence 357999988777766543 211000 00122348899999999999999998742 1122 3333222110
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC----------h----hhHHHHHHhhcC--CCCC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED----------Y----NKWESFRRCLIN--GQRG 273 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~~~g 273 (674)
.. .......+...+.........++++|+++... . .....+...+.. ...+
T Consensus 84 ------------~~-~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 ------------MF-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp ------------SC-CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred ------------Hh-hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 00 00111222333333444567899999983210 0 122333333322 2334
Q ss_pred cEEEEEcCChh-HHhhc-C---CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCC-ChHHHHHH
Q 039885 274 SKILVTTRKET-VAGMM-E---STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKG-LPLAVKTI 346 (674)
Q Consensus 274 s~IivTtR~~~-va~~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~ 346 (674)
..||.||.... +.... . -...+.+...+.++-.+++....-... ...... ...++..+.| .+--+..+
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHHHH
Confidence 56666665443 21111 1 134677888888887788776543211 111111 2336777888 66555443
No 214
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0016 Score=68.55 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=96.1
Q ss_pred CceeechhhHHHHHHHhcCCC--C-----CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEG--S-----EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~--~-----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.++.|.++.+++|.+.+.-.- + ..-...+-|.++|++|.|||+||+++++.. ...| +.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~--~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI--GANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEehhhhcc--
Confidence 467899988888877653210 0 002245778999999999999999999842 2222 3344332111
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC-----------h---hhHHHHHHhhcC--CCCC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED-----------Y---NKWESFRRCLIN--GQRG 273 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~---~~~~~l~~~l~~--~~~g 273 (674)
... ......+.......-...+++|++|+++... . .....+...+.. ...+
T Consensus 254 ------------k~~-Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 ------------KYI-GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp ------------SSS-SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred ------------ccc-hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 100 0111111222222224578999999996410 0 112334444432 2345
Q ss_pred cEEEEEcCChhHHhh-c-C---CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 274 SKILVTTRKETVAGM-M-E---STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 274 s~IivTtR~~~va~~-~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
..||.||-....... + . -...+++..-+.++-.++|..+.-.... ...-++. .|++.+.|+-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl~----~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDFE----AAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCHH----HHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCHH----HHHHhCCCCC
Confidence 567777765432211 1 1 1346778777778778888766533221 1122343 4777887754
No 215
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.55 E-value=5.6e-05 Score=67.73 Aligned_cols=86 Identities=17% Similarity=0.060 Sum_probs=50.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
..+.|+|+.|+|||||++.++...... .+ ..+++....-... .+..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~------------------------------~~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT------------------------------DAAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC------------------------------GGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH------------------------------HHHhCC
Confidence 478999999999999999998743221 11 2456654432211 011245
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhcC-CCCCc-EEEEEcCC
Q 039885 245 FLLVLDDVWTEDYNKWESFRRCLIN-GQRGS-KILVTTRK 282 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~IivTtR~ 282 (674)
-+|||||+.......-+.+...+.. ...|. +||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 5889999976543333333333321 11233 48888873
No 216
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.53 E-value=0.00027 Score=71.56 Aligned_cols=158 Identities=14% Similarity=0.125 Sum_probs=84.1
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc-cccccceEEEEEeCCCCCHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND-VINHFGKRIWVCVSDPFDEYRIAKAI 215 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i 215 (674)
.+++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+.+... ....| +.++++.. ...++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~--~~~l~~~- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAAL--NESLLES- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSC--CHHHHHH-
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCC--ChHHHHH-
Confidence 4589999999998887754321 123477999999999999999987321 11222 33444432 2222221
Q ss_pred HHHhhCCCCCccc-H-HHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEcCC
Q 039885 216 IEALEGSATNLVE-L-NALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVTTRK 282 (674)
Q Consensus 216 l~~l~~~~~~~~~-~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~ 282 (674)
.+.+....... . ......+... ..-.|+||++..........+...+.... ...+||.||..
T Consensus 72 --~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 72 --ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp --HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred --HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 22222110000 0 0000111111 12368999998876666666666665431 34678877765
Q ss_pred hh---HHh---------hcCCCCeEeCCCCC--hHhhHHHHH
Q 039885 283 ET---VAG---------MMESTDVISIKELS--ERECWSLFE 310 (674)
Q Consensus 283 ~~---va~---------~~~~~~~~~l~~L~--~~~~~~Lf~ 310 (674)
.- +.. .+. ...+.+++|. .++...++.
T Consensus 147 ~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 147 DLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp CHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHH
T ss_pred cHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHH
Confidence 31 111 111 3357788888 455544443
No 217
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.53 E-value=5.1e-05 Score=74.80 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=63.1
Q ss_pred cCCCCceEEEecCCCccccc--chhHhhccCCceeEEEeccccccccccccccccccccCCC--CCcceeecCCCCc-cc
Q 039885 492 LNAKKLRSFLISSPYDVFSS--VLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLI--HLRFLQLRDLMID-EL 566 (674)
Q Consensus 492 ~~l~~L~~L~l~~~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~--~Lr~L~L~~~~i~-~l 566 (674)
.++++|++|++++|. +.+ .+|..+..+++|+.|+| ++|.++++ ..+..+. +|++|+|++|.+. .+
T Consensus 167 ~~l~~L~~L~Ls~N~--l~~l~~l~~~~~~l~~L~~L~L-------s~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR--LYRLDDMSSIVQKAPNLKILNL-------SGNELKSE-RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HHCTTCCEEECTTSC--CCCCGGGTTHHHHSTTCCEEEC-------TTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hhCCCCCEEECCCCC--CCCCccchhHHhhCCCCCEEEC-------CCCccCCc-hhhhhcccCCcceEEccCCcCcccc
Confidence 357789999999988 655 34567789999999999 99999886 3355555 9999999999986 45
Q ss_pred cc-------cccCCCcccEEEe
Q 039885 567 PE-------TCCELFNLQTLEI 581 (674)
Q Consensus 567 P~-------~i~~L~~L~~L~l 581 (674)
|. .+..+++|+.||-
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESS
T ss_pred CcchhHHHHHHHHCcccCeECC
Confidence 52 3678999999973
No 218
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0019 Score=67.90 Aligned_cols=179 Identities=15% Similarity=0.041 Sum_probs=95.5
Q ss_pred CceeechhhHHHHHHHhcC----CCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLG----EGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.++.|.++.+++|.+.+.- ..- -.-...+-|.++|++|.|||+||+++++. ....| +.|..+.-
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L---- 279 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSEL---- 279 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGG----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHh----
Confidence 4688999888888775421 000 00224567899999999999999999984 22222 33333321
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC--------h------hhHHHHHHhhcCC--CCC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED--------Y------NKWESFRRCLING--QRG 273 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~------~~~~~l~~~l~~~--~~g 273 (674)
..... ......+.......-...+++|++|+++... . .....+...+... ..+
T Consensus 280 ----------~sk~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 280 ----------VQKYV-GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp ----------CCCSS-SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred ----------hcccC-CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 11110 0111112222222234578999999986421 0 0122233333322 234
Q ss_pred cEEEEEcCChh-----HHhhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 274 SKILVTTRKET-----VAGMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 274 s~IivTtR~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
..||.||-... +.+...-...+++...+.++-.++|..+.-.... ...-++. .|++.|.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl~----~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRWE----LISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCHH----HHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCHH----HHHHHCCCCC
Confidence 45566665432 2111123457888888888888888776533221 1222343 3778887754
No 219
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.47 E-value=6.5e-05 Score=70.12 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=84.2
Q ss_pred CCceeEEEEEcC-CcCC-----ccccccCCCCceEEEecCCCccccc----chhHhhccCCceeEEEecccccccccccc
Q 039885 471 KEKLRHSMLMLG-FEAS-----FPDSLLNAKKLRSFLISSPYDVFSS----VLPRLFDQLTCLRTLKIVAHDRRWSRGMI 540 (674)
Q Consensus 471 ~~~~r~l~l~~~-~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l 540 (674)
.+.+++|++++| .+.. +...+...++|++|++++|. +.. .+...+...+.|++|+| ++|.+
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~--i~~~g~~~l~~~L~~n~~L~~L~L-------~~N~i 105 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR--SNDPVAFALAEMLKVNNTLKSLNV-------ESNFI 105 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC--CCHHHHHHHHHHHHHCSSCCEEEC-------CSSCC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC--CChHHHHHHHHHHHhCCCcCEEEC-------cCCcC
Confidence 467889999988 7642 44556778999999999998 432 24556777889999999 88887
Q ss_pred cc-----ccccccCCCCCcceee--cCCCCcc-----ccccccCCCcccEEEeccc
Q 039885 541 RE-----IPKEIEKLIHLRFLQL--RDLMIDE-----LPETCCELFNLQTLEIRQR 584 (674)
Q Consensus 541 ~~-----lp~~i~~L~~Lr~L~L--~~~~i~~-----lP~~i~~L~~L~~L~l~~~ 584 (674)
.. +...+...++|++|+| ++|.|+. +...+...++|++|+|++|
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 65 5677888899999999 8899873 6667778899999999998
No 220
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.43 E-value=0.00082 Score=77.21 Aligned_cols=148 Identities=17% Similarity=0.180 Sum_probs=78.5
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcc---ccccc-ceEEEEEeCCCCCHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDND---VINHF-GKRIWVCVSDPFDEYRIA 212 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~~ 212 (674)
..+|||+.+++++...|.... ..-+.++|++|+|||++|+.+.+... +-... .+. ++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc--------
Confidence 359999999999999997532 23378999999999999999976410 00011 111 111111
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhhc---
Q 039885 213 KAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVAGMM--- 289 (674)
Q Consensus 213 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~--- 289 (674)
.....+. ....... .+......++.+|++|.- .+....+...+. ....++|.||.........
T Consensus 245 ---g~~~~G~--~e~~l~~---~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ---GTKYRGE--FEDRLKK---VMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ---cccccch--HHHHHHH---HHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 0000000 0111222 223333467789999911 122222333332 2235666666544311110
Q ss_pred ----CCCCeEeCCCCChHhhHHHHHHHh
Q 039885 290 ----ESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 290 ----~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
.....+.+...+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112478999999999999998654
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.38 E-value=0.00046 Score=79.26 Aligned_cols=156 Identities=14% Similarity=0.235 Sum_probs=88.5
Q ss_pred CceeechhhHHHHHHHhcCCCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++.. ...-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhccccc----
Confidence 4589999999888887753211 012234579999999999999999998742 1111223445544311100
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCC-----------CCCcEEEEEcCC
Q 039885 214 AIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLING-----------QRGSKILVTTRK 282 (674)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IivTtR~ 282 (674)
......+...++. ...-+|+||++.....+....+...+..+ ....+||+||..
T Consensus 565 ------------~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ------------STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0001111122221 23348999999887777777777666542 134578888873
Q ss_pred h-----h----HHhhc-----CC-CCeEeCCCCChHhhHHHHHHHh
Q 039885 283 E-----T----VAGMM-----ES-TDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 283 ~-----~----va~~~-----~~-~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
. . +...+ .- ...+.+.+++.++...++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 1 11111 11 2478888888888777776543
No 222
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0019 Score=67.93 Aligned_cols=179 Identities=13% Similarity=0.047 Sum_probs=93.5
Q ss_pred CceeechhhHHHHHHHhcC----CCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLG----EGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.++.|.++.+++|.+.+.. ..- ..-...+-|.++|++|.|||.||+++++.. ...| +.+..+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~--~~~f---~~v~~s~l---- 251 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT--NATF---LKLAAPQL---- 251 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGG----
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh--CCCE---EEEehhhh----
Confidence 4689999998888876431 100 002345678999999999999999999842 2222 23333321
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-------C----hh---hHHHHHHhhcCC--CCC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-------D----YN---KWESFRRCLING--QRG 273 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------~----~~---~~~~l~~~l~~~--~~g 273 (674)
...... .....+.......-...+++|++|+++.. . .. ....+...+... ..+
T Consensus 252 ----------~~~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 252 ----------VQMYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp ----------CSSCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred ----------hhcccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 111100 01111111111122346789999998420 0 00 122333444322 234
Q ss_pred cEEEEEcCChhHHhh-c-C---CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 274 SKILVTTRKETVAGM-M-E---STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 274 s~IivTtR~~~va~~-~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
..||.||........ + . -...+++...+.++-.++|..+.-.... ...-++. +|++.+.|+-
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl~----~lA~~t~G~s 387 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINWQ----ELARSTDEFN 387 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCHH----HHHHHCSSCC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCHH----HHHHhCCCCC
Confidence 456667765432211 1 1 2347788888888888888765533221 1112343 4777887753
No 223
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.35 E-value=0.0017 Score=66.42 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=86.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
..++|++..++.+...+.... -+.++|++|+|||+||+.+.+. ....| ..+.++......++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCcee
Confidence 368999999999988887432 4889999999999999999873 22222 2334443333333221100
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcC-C--CeEEEEEeCCCCCChhhHHHHHHhhcCC-----------CCCcEEEEEcCC
Q 039885 217 EALEGSATNLVELNALLLRINESIA-R--EKFLLVLDDVWTEDYNKWESFRRCLING-----------QRGSKILVTTRK 282 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~-~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IivTtR~ 282 (674)
........ .+. + ...++++|++..........+...+... .....||.|+..
T Consensus 94 ---~~~~~~~~-----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 94 ---YNQHKGNF-----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp ---EETTTTEE-----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred ---ecCCCCce-----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 00000000 000 0 1258999999877666666665554321 233455555542
Q ss_pred hh------HH-hhcCCCC-eEeCCCCChHhhHHHHHHHhh
Q 039885 283 ET------VA-GMMESTD-VISIKELSERECWSLFERIAF 314 (674)
Q Consensus 283 ~~------va-~~~~~~~-~~~l~~L~~~~~~~Lf~~~a~ 314 (674)
.. +. ....-.. .+.+.+.+.++-.+++.+.+.
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 21 11 1111122 588999999999999988764
No 224
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.34 E-value=0.00012 Score=67.00 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=46.1
Q ss_pred CceeEEEecccccccccccccc-ccccccCCCCCcceeecCCC-Cccc-cccccCC----CcccEEEecccccccccc-c
Q 039885 521 TCLRTLKIVAHDRRWSRGMIRE-IPKEIEKLIHLRFLQLRDLM-IDEL-PETCCEL----FNLQTLEIRQRGYYLRRL-P 592 (674)
Q Consensus 521 ~~Lr~L~L~~~~~~~~~~~l~~-lp~~i~~L~~Lr~L~L~~~~-i~~l-P~~i~~L----~~L~~L~l~~~~~~~~~l-P 592 (674)
..|+.||+ ++|.++. =-..+.++++|+.|+|++|. |+.- =..++.+ ++|++|+|++| ..++.- -
T Consensus 61 ~~L~~LDL-------s~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C-~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDA-------TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC-GNVTDKGI 132 (176)
T ss_dssp CCEEEEEE-------ESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC-TTCCHHHH
T ss_pred ceEeEEeC-------cCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC-CcCCHHHH
Confidence 46888888 7777654 22446777788888888775 5521 1223443 35777777777 333221 1
Q ss_pred cccccCccCCeeeeeee
Q 039885 593 HGFGRLVNLRHLSEFVV 609 (674)
Q Consensus 593 ~~i~~L~~L~~L~l~~~ 609 (674)
..+.++++|++|++..+
T Consensus 133 ~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HHGGGCTTCCEEEEESC
T ss_pred HHHhcCCCCCEEECCCC
Confidence 12445566666666443
No 225
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.31 E-value=0.0048 Score=66.01 Aligned_cols=179 Identities=17% Similarity=0.133 Sum_probs=95.2
Q ss_pred CceeechhhHHHHHHHhc---CCCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHH
Q 039885 137 SDVCGRVEEKSTLKSKLL---GEGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYR 210 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 210 (674)
.+++|.++.++++.+.+. .... -.....+-|.|+|++|+|||+||+.+++.. ...| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCCe---eeCCHHHHHHH--
Confidence 469999987777666542 1100 000112347899999999999999998742 1222 23443322110
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCCh--------------hhHHHHHHhhcC--CCCCc
Q 039885 211 IAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDY--------------NKWESFRRCLIN--GQRGS 274 (674)
Q Consensus 211 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs 274 (674)
. ...........+.........+|+||+++.... .....+...+.. ...+.
T Consensus 89 --------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 001112223334444456789999999854211 123334333321 12455
Q ss_pred EEEEEcCChhHHh-h-cC---CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 275 KILVTTRKETVAG-M-ME---STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 275 ~IivTtR~~~va~-~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
.||.||....... . .. -...+.+...+.++-.+++..++-.... .....+ ..|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhhH----HHHHHhcCCCc
Confidence 6777776554321 1 11 1237788888888877888766533211 111123 33778888876
No 226
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.26 E-value=0.00031 Score=64.19 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=69.9
Q ss_pred cccccccCCCCCcceeecCCCCccc-cccccCCCcccEEEecccccccccc-ccccccC----ccCCeeeeeeeCccCCC
Q 039885 542 EIPKEIEKLIHLRFLQLRDLMIDEL-PETCCELFNLQTLEIRQRGYYLRRL-PHGFGRL----VNLRHLSEFVVGITGSR 615 (674)
Q Consensus 542 ~lp~~i~~L~~Lr~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~~~~~l-P~~i~~L----~~L~~L~l~~~~~~~~~ 615 (674)
.+|.....-.+|+.|||++|.|+.. -..+..+++|++|+|++| ..++.- -..+..+ ++|++|++..+. .
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C-~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~--~-- 126 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC-HYIEDGCLERLSQLENLQKSMLEMEIISCG--N-- 126 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC-TTCCHHHHHHHHTCHHHHHHCCEEEEESCT--T--
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC-CccCHHHHHHHHhcccccCCCCEEEcCCCC--c--
Confidence 3675443335799999999997632 234688999999999999 444321 1224444 379999997664 2
Q ss_pred CCCCCCCCChhhccCcccCCCeeEEeccCCCCChh
Q 039885 616 NDSRSRGCKLEVLGQLRHLRGSLRIRGLGNVKDVD 650 (674)
Q Consensus 616 ~~~~~~~~~~~~L~~L~~L~g~L~i~~l~~~~~~~ 650 (674)
. ....+..|.++++|+ .|.++++..+++..
T Consensus 127 --I--TD~Gl~~L~~~~~L~-~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 127 --V--TDKGIIALHHFRNLK-YLFLSDLPGVKEKE 156 (176)
T ss_dssp --C--CHHHHHHGGGCTTCC-EEEEESCTTCCCHH
T ss_pred --C--CHHHHHHHhcCCCCC-EEECCCCCCCCchH
Confidence 1 344677788889999 99999999988754
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.25 E-value=0.0014 Score=62.48 Aligned_cols=86 Identities=19% Similarity=0.131 Sum_probs=53.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhC-----------CC-CCcccHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEG-----------SA-TNLVELN 230 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~-----------~~-~~~~~~~ 230 (674)
.-.++.|+|.+|+||||||..+.. ..-..++|++....++...+.. +.+..+. .. ....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 345899999999999999998876 1223577888776566655443 3332211 11 1112223
Q ss_pred HHHHHHHHHcCCCeEEEEEeCCCC
Q 039885 231 ALLLRINESIAREKFLLVLDDVWT 254 (674)
Q Consensus 231 ~~~~~l~~~l~~kr~LlVlDdv~~ 254 (674)
.....++..+..+.-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344555555544577999998754
No 228
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0032 Score=65.54 Aligned_cols=179 Identities=15% Similarity=0.060 Sum_probs=92.8
Q ss_pred CceeechhhHHHHHHHhcC----CCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLG----EGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.++.|.++.+++|.+.+.- ..- ..-...+-|.++|++|.|||.||+++++.. ...| +.+..+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~--~~~f---i~v~~s~l---- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT--SATF---LRIVGSEL---- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH--TCEE---EEEESGGG----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh--CCCE---EEEEHHHh----
Confidence 3578899888888776532 100 002245679999999999999999999842 2222 23333221
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC-----------Ch---hhHHHHHHhhcC--CCCC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE-----------DY---NKWESFRRCLIN--GQRG 273 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~---~~~~~l~~~l~~--~~~g 273 (674)
..... ......+.......-....++|++|+++.. +. .....+...+.. ...+
T Consensus 253 ----------~sk~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 253 ----------IQKYL-GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp ----------CCSSS-SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred ----------hhccC-chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 11110 011111111122222356799999988531 00 112233333322 2334
Q ss_pred cEEEEEcCChhHHhh-c-C---CCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 274 SKILVTTRKETVAGM-M-E---STDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 274 s~IivTtR~~~va~~-~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
..||.||-....... + . -...+.+..-+.++-.++|..+.-... ....-++.. |++.+.|+-
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl~~----LA~~T~GfS 388 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNLET----LVTTKDDLS 388 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCHHH----HHHHCCSCC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCHHH----HHHhCCCCC
Confidence 456666654432211 1 1 133677877788888888877653222 112223444 677777653
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.11 E-value=0.00012 Score=72.76 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=35.4
Q ss_pred cCceeechhhHHHHHHHhcCCCCC------CCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSE------QQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|.+..++++.+.+..-... .....+-+.|+|++|+|||+||+.+++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 356999998888887765410000 0011233779999999999999999874
No 230
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.99 E-value=0.0012 Score=75.82 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=73.4
Q ss_pred CceeechhhHHHHHHHhcCCCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAK 213 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 213 (674)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+.. . ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 3588999888888777642110 002244579999999999999999998742 1 2233445443211100
Q ss_pred HHHHHhhCCCCCccc---HHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEE
Q 039885 214 AIIEALEGSATNLVE---LNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVT 279 (674)
Q Consensus 214 ~il~~l~~~~~~~~~---~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivT 279 (674)
...+.+..+.-.. ...+...++. ....+|+||++.....+....+...+..+. ....||+|
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred --HhhhcCCCCCCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 0001111111111 0112222222 345799999998877777777777665321 23457777
Q ss_pred cCC
Q 039885 280 TRK 282 (674)
Q Consensus 280 tR~ 282 (674)
|..
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 753
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.99 E-value=0.0055 Score=69.49 Aligned_cols=180 Identities=12% Similarity=0.085 Sum_probs=97.6
Q ss_pred CceeechhhHHHHHHHhc----CCCCC---CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLL----GEGSE---QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~----~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.++.|.++.+++|.+++. ...-. .-...+-|.++|++|+|||+||+.+++.. ..+| +.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCeE---EEEEhHH-----
Confidence 468899988888877652 11100 02345779999999999999999999853 2222 3333221
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC-----------hhhHHHHHHhhcCC--CCCcEE
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED-----------YNKWESFRRCLING--QRGSKI 276 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~I 276 (674)
+..... ......+...+.......+.+|+||+++... ......+...+... ..+..|
T Consensus 274 ---------l~sk~~-gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 ---------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HHSSCT-THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred ---------hhcccc-hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 111111 1122233344444556778999999985421 01122233222221 223345
Q ss_pred EEEcCChh-HHhhc----CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChH
Q 039885 277 LVTTRKET-VAGMM----ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPL 341 (674)
Q Consensus 277 ivTtR~~~-va~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 341 (674)
|.||.... +-..+ .-...+++...+.++-.++|..+.-... .....++. .|++++.|.--
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvdl~----~lA~~T~Gfsg 408 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDLE----QVANETHGHVG 408 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCCHH----HHHHHCCSCCH
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccCHH----HHHHhcCCCCH
Confidence 55655432 22221 1234788888888888888876542211 11222343 47788887653
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.97 E-value=0.005 Score=61.74 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999984
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.94 E-value=0.0021 Score=70.41 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=77.0
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAII 216 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 216 (674)
.+++|.+.-.+.+.+.+.-..-.......++.++|++|+||||||+.++... ...| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhHHH
Confidence 4588888777777554421100001135689999999999999999998742 2222 2233333222111111111
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCChh----hHHHHHHhhcCCC---------------CCcEEE
Q 039885 217 EALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTEDYN----KWESFRRCLINGQ---------------RGSKIL 277 (674)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~Ii 277 (674)
..++. ........+... ....-+++||++...... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11110 001111122222 223348889999765432 1233444442211 234566
Q ss_pred EEcCChh-----HHhhcCCCCeEeCCCCChHhhHHHHHHHh
Q 039885 278 VTTRKET-----VAGMMESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 278 vTtR~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
.||.... +...+ ..+.+.+++.++-..++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 6665432 22222 367888888888887776654
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.91 E-value=0.00042 Score=69.46 Aligned_cols=70 Identities=21% Similarity=0.363 Sum_probs=44.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe--CCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCV--SDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESI 240 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (674)
..+++.|+|++|+|||+||..+... .-..++|+++ ....+. . ..+.+...+.+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHH
Confidence 3457789999999999999998763 1123456666 332111 0 034455555566666
Q ss_pred CCCeEEEEEeCCCC
Q 039885 241 AREKFLLVLDDVWT 254 (674)
Q Consensus 241 ~~kr~LlVlDdv~~ 254 (674)
...+ +||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5555 999999954
No 235
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.87 E-value=0.003 Score=73.47 Aligned_cols=135 Identities=16% Similarity=0.240 Sum_probs=73.3
Q ss_pred ceeechhhHHHHHHHhcCCCC---CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHH
Q 039885 138 DVCGRVEEKSTLKSKLLGEGS---EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKA 214 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 214 (674)
.++|.+..++.+...+..... ........+.|+|++|+|||++|+.+.+... ... ...+.++++...... ...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~-~~~-~~~i~i~~~~~~~~~-~~s- 634 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF-DTE-EAMIRIDMTEYMEKH-AVS- 634 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH-SSG-GGEEEECTTTCCSSG-GGG-
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCC-CcEEEEechhccchh-HHH-
Confidence 579999988888887753210 0022346789999999999999999987321 011 122344444322110 000
Q ss_pred HHHHhhCCCCC---cccHHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCC-----------CCcEEEEEc
Q 039885 215 IIEALEGSATN---LVELNALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQ-----------RGSKILVTT 280 (674)
Q Consensus 215 il~~l~~~~~~---~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IivTt 280 (674)
.+.+..+. ......+...++. ...-+|+||++.....+....+...+..+. .+..||+||
T Consensus 635 ---~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 635 ---RLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp ---GC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred ---HHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 01000000 0001122222322 234589999998877777777877776541 244577777
Q ss_pred CC
Q 039885 281 RK 282 (674)
Q Consensus 281 R~ 282 (674)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 236
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.85 E-value=0.0005 Score=69.62 Aligned_cols=41 Identities=24% Similarity=0.189 Sum_probs=28.3
Q ss_pred hhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 144 EEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 144 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+.+.+++..... .....+.|+|++|+|||+||+.+++.
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344455556553221 12457889999999999999999884
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.80 E-value=0.009 Score=58.43 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=86.7
Q ss_pred cCceeechhhHHHHHHHhcCCCCC------CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 136 VSDVCGRVEEKSTLKSKLLGEGSE------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 136 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
-.+++|.+..+.++.+....-... .-.-.+-+.|+|++|+||||||+.++.... ...+.+...
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------ 83 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------ 83 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------
Confidence 346889887666655543210000 000112289999999999999999987422 122333211
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC----------Chhh----HHHHHHhhcCCC--CC
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE----------DYNK----WESFRRCLINGQ--RG 273 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~----~~~l~~~l~~~~--~g 273 (674)
.+. ... .. .....+...++..-.....++++|++... .... ...+...+..+. ..
T Consensus 84 ~~~----~~~----~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 84 DFV----EMF----VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp HHH----HSC----TT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred HHH----HHH----hh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 111 100 00 00111122222222345689999998321 0011 223333333322 22
Q ss_pred cEEEEEcCChhHHhh-c----CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 274 SKILVTTRKETVAGM-M----ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 274 s~IivTtR~~~va~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
..++.||....+... . .-...+.+...+.++-.+++...+-... ......+. .|++.+.|.-
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~~----~la~~~~G~~ 221 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVDLA----LLAKRTPGFV 221 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC-BCTTCCHH----HHHHTCTTCC
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC-CCcccCHH----HHHHHcCCCC
Confidence 334445555443221 1 1234788888888888888876653211 11112232 3777777754
No 238
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.79 E-value=0.027 Score=57.79 Aligned_cols=158 Identities=11% Similarity=-0.028 Sum_probs=99.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHH-HcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINE-SIA 241 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~ 241 (674)
-.++..++|+.|.||++.|+.+..... ...|+....+.+....+. +++.+.+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDW---------------------NAIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCH---------------------HHHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCH---------------------HHHHHHhcCcCCc
Confidence 346889999999999999988876321 223432222222222233 333333222 234
Q ss_pred CCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCC-------hhHHhhc-CCCCeEeCCCCChHhhHHHHHHH
Q 039885 242 REKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRK-------ETVAGMM-ESTDVISIKELSERECWSLFERI 312 (674)
Q Consensus 242 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~-------~~va~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 312 (674)
+++-++|+|++.. .....++.+...+.....++.+|+++.. ..+...+ .....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5677889999976 5556788888888766667777766542 2333333 33458899999999998888776
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHH
Q 039885 313 AFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTI 346 (674)
Q Consensus 313 a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 346 (674)
+-..+...+ .+....+++.++|.+..+...
T Consensus 155 ~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLELD----DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCEEC----HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhchHHHHHHHH
Confidence 644332111 344666899999998877654
No 239
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.78 E-value=0.023 Score=56.27 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=79.6
Q ss_pred CceeechhhHHHHHHHhcCCCC--------CCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGS--------EQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDE 208 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 208 (674)
.++.|.++.+++|.+.+...-. +-..... +.++|++|+||||||+.++..... ..+.+..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 4688888888887765421100 0001112 999999999999999999874221 2344443321110
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHH-HHHHcCCCeEEEEEeCCCCCC-----------hhhHHHHHHhhcCCC--CCc
Q 039885 209 YRIAKAIIEALEGSATNLVELNALLLR-INESIAREKFLLVLDDVWTED-----------YNKWESFRRCLINGQ--RGS 274 (674)
Q Consensus 209 ~~~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~--~gs 274 (674)
. ....+..... .+..-.....++++|++.... ......+...+..+. ...
T Consensus 84 ~----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 Y----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp T----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred h----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0 0000111111 111112356899999985421 011233333443322 234
Q ss_pred EEEEEcCChhHHhh-----cCCCCeEeCCCCChHhhHHHHHHHh
Q 039885 275 KILVTTRKETVAGM-----MESTDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 275 ~IivTtR~~~va~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
-++.+|....+... ..-...+.+...+.++-.++|....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 45556665543221 1224467888888888888887754
No 240
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.69 E-value=0.02 Score=56.79 Aligned_cols=181 Identities=16% Similarity=0.109 Sum_probs=87.7
Q ss_pred ccCceeechhhHHHHHHHhcCCCCC------CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 039885 135 DVSDVCGRVEEKSTLKSKLLGEGSE------QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDE 208 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 208 (674)
.-.+++|.+..++++.+....-... .-.-.+-+.|+|++|+||||||+.++.... ...+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH-----
Confidence 3457899887766665543211000 000111289999999999999999987422 122333221
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCC----------Chhh----HHHHHHhhcCCCC--
Q 039885 209 YRIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTE----------DYNK----WESFRRCLINGQR-- 272 (674)
Q Consensus 209 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~----~~~l~~~l~~~~~-- 272 (674)
.+. ... .. .....+...++..-.....++|+|++... .... ...+...+..+..
T Consensus 108 -~~~----~~~----~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -DFV----EMF----VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -HHH----HST----TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -HHH----HHH----hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 111 100 00 00111112222222345689999998321 0011 1223333332222
Q ss_pred CcEEEEEcCChhHH-----hhcCCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 273 GSKILVTTRKETVA-----GMMESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 273 gs~IivTtR~~~va-----~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
...++.||....+. ....-...+.+...+.++-.+++...+-... ......+ ..++..+.|..
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~----~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVDL----ALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC-BCTTCCH----HHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC-CCcccCH----HHHHHHcCCCC
Confidence 23344455544322 1112345788998888888888876653211 1111122 23777777765
No 241
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.59 E-value=0.014 Score=60.79 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+.++|++|+|||++|+.+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999874
No 242
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.51 E-value=0.014 Score=62.75 Aligned_cols=177 Identities=17% Similarity=0.159 Sum_probs=90.7
Q ss_pred ccCceeechhhHHHHHHHh---cCCCCCC---CCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 039885 135 DVSDVCGRVEEKSTLKSKL---LGEGSEQ---QNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDE 208 (674)
Q Consensus 135 ~~~~~vGr~~~~~~l~~~L---~~~~~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 208 (674)
.-.+++|.++.+.++.+.. .....-. -.-.+-+.|+|++|+||||||+.++.... . ..+.++.+.-..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~---~~i~i~g~~~~~- 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASGSDFVE- 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--C---CEEEEEGGGGTS-
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--C---CEEEEehhHHHH-
Confidence 3457999987776666543 2210000 00122389999999999999999987422 1 223344332100
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCC----CeEEEEEeCCCCCC----------hhh----HHHHHHhhcCC
Q 039885 209 YRIAKAIIEALEGSATNLVELNALLLRINESIAR----EKFLLVLDDVWTED----------YNK----WESFRRCLING 270 (674)
Q Consensus 209 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~~ 270 (674)
.. .......++..++. ...++++|++.... .+. ...+...+..+
T Consensus 103 -------------~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 -------------MF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp -------------SC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred -------------hh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 00 01112233334432 34799999984321 112 23333333322
Q ss_pred --CCCcEEEEEcCChhHHhh-c----CCCCeEeCCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCCh
Q 039885 271 --QRGSKILVTTRKETVAGM-M----ESTDVISIKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLP 340 (674)
Q Consensus 271 --~~gs~IivTtR~~~va~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 340 (674)
..+..|+.||....+... + .-...+.+...+.++-.+++..++-.. .......+ ..|+..+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~l----~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVDL----ALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSSTT----HHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHHH----HHHHHhcCCCC
Confidence 233455556665543221 1 123478888888888888887664221 11111122 23667777765
No 243
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.50 E-value=0.0064 Score=62.56 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=32.8
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+++|.+..++.+...+.... ..-+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458999886666554444221 123889999999999999999873
No 244
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.39 E-value=0.023 Score=52.12 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998764
No 245
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.36 E-value=0.0097 Score=57.55 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=51.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHhhCCC---------CCcccH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVIN----HFGKRIWVCVSDPFDEYRIAKAIIEALEGSA---------TNLVEL 229 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~---------~~~~~~ 229 (674)
.-.++.|+|++|+|||||+..+........ .-..++|++....+....+. .+++.++... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 345899999999999999998876321111 12467888877765555443 3444443221 001111
Q ss_pred H---HHHHHHHHHcC-CCeEEEEEeCCC
Q 039885 230 N---ALLLRINESIA-REKFLLVLDDVW 253 (674)
Q Consensus 230 ~---~~~~~l~~~l~-~kr~LlVlDdv~ 253 (674)
. .....+...+. .+.-+||+|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 22233444442 456688888874
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.33 E-value=0.0029 Score=60.38 Aligned_cols=113 Identities=13% Similarity=-0.050 Sum_probs=62.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCC--CcccHHHHHHHHHHHc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSAT--NLVELNALLLRINESI 240 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l 240 (674)
...++.|+|..|+||||++..+.... ..+-..++.+..... .. ....+++.++.... ......++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 44689999999999999997776532 222122333332221 11 11233333332211 1223345555666555
Q ss_pred CCCeE-EEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCCh
Q 039885 241 AREKF-LLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKE 283 (674)
Q Consensus 241 ~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 283 (674)
.+.++ +||+|.+.....+..+.+.. +.+ .|..||+|-+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 54444 99999997654444444433 333 267899998854
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.33 E-value=0.014 Score=67.19 Aligned_cols=157 Identities=13% Similarity=0.095 Sum_probs=83.8
Q ss_pred CceeechhhHHHHHHHhcCC----C---CCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 039885 137 SDVCGRVEEKSTLKSKLLGE----G---SEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 209 (674)
.+++|.+..+++|.+++... . .-.-.....|.|+|++|+||||||+.+... ....| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 56899999999998877420 0 000123456899999999999999999874 22222 3333211
Q ss_pred HHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCeEEEEEeCCCCCC-----------hhhHHHHHHhhcCC--CCCcEE
Q 039885 210 RIAKAIIEALEGSATNLVELNALLLRINESIAREKFLLVLDDVWTED-----------YNKWESFRRCLING--QRGSKI 276 (674)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~I 276 (674)
+..... ......+...+.........++++|++.... ......+...+... ..+..+
T Consensus 274 ---------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 ---------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred ---------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 111110 1111122222333333467899999984211 01122233333221 223455
Q ss_pred EEEcCChh-HHhhcC----CCCeEeCCCCChHhhHHHHHHHh
Q 039885 277 LVTTRKET-VAGMME----STDVISIKELSERECWSLFERIA 313 (674)
Q Consensus 277 ivTtR~~~-va~~~~----~~~~~~l~~L~~~~~~~Lf~~~a 313 (674)
|.||.... +...+. -...+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 55655432 211111 12357788888888888887665
No 248
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.23 E-value=0.03 Score=54.03 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=32.9
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhc---CCCCCcEEEEEcCChhHHh
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLI---NGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~---~~~~gs~IivTtR~~~va~ 287 (674)
-.+.+.+-.++-+++||+--. -|...-..+...+. ....|..||++|.+...+.
T Consensus 136 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 136 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 345566666677899998743 23444455655552 2234667888887765544
No 249
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.22 E-value=0.0098 Score=57.02 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=61.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCC-------------------
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSAT------------------- 224 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~------------------- 224 (674)
-.++.|+|++|+|||||++.++.... ..=..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 35899999999999999998875321 1112455655433 4444444332 3322110
Q ss_pred ----CcccHHHHHHHHHHHc---CCCeEEEEEeCCCCC---ChhhHHHHHHhhcC--CCCCcEEEEEcCCh
Q 039885 225 ----NLVELNALLLRINESI---AREKFLLVLDDVWTE---DYNKWESFRRCLIN--GQRGSKILVTTRKE 283 (674)
Q Consensus 225 ----~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~IivTtR~~ 283 (674)
...+..++...+...+ .-+..+||+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0114455555554443 223459999987521 33333444333332 12467888888754
No 250
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.21 E-value=0.019 Score=58.95 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=39.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVIN----HFGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
.-.++.|+|.+|+||||||..++....... .-..++|++....++...+.. +++.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 557899999999999999988876421111 124678999888877776553 344443
No 251
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.21 E-value=0.013 Score=59.65 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=39.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccc---------cc-----ceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVIN---------HF-----GKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
.-.++.|+|.+|+||||||..++....... .. ..++|++....++..++.. +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457899999999999999988875321111 11 4678999888887776664 345554
No 252
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.17 E-value=0.059 Score=51.63 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhh-cCCCCCcEEEEEcCChhHHhh
Q 039885 233 LLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCL-INGQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 233 ~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l-~~~~~gs~IivTtR~~~va~~ 288 (674)
.-.+.+.+-.++-+++||+--. -|...-..+...+ .....|..||++|.+...+..
T Consensus 138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~ 195 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 195 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence 3345666666777999998643 2344455555543 333346678888887765543
No 253
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.09 E-value=0.0057 Score=57.54 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=33.3
Q ss_pred chhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc
Q 039885 142 RVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 142 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
|++.++++.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567788888777543 23567999999999999999998875
No 254
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.09 E-value=0.013 Score=60.04 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=54.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSAT-----NLVELNALLLRIN 237 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (674)
.-.++.|+|++|+||||||..++.... ..=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999998876422 111346788877776654 4445543321 2234555555555
Q ss_pred HHcC-CCeEEEEEeCCCC
Q 039885 238 ESIA-REKFLLVLDDVWT 254 (674)
Q Consensus 238 ~~l~-~kr~LlVlDdv~~ 254 (674)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5443 4455899998744
No 255
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.98 E-value=0.023 Score=57.83 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=39.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccc----cceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINH----FGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
.-.++.|+|.+|+||||||..++........ -..++|++....++..++.. +++.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 3468999999999999999888753211111 23678999888877776653 445553
No 256
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.98 E-value=0.0065 Score=56.29 Aligned_cols=118 Identities=19% Similarity=0.087 Sum_probs=61.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC---CCCHHHHHHHHHHHh---hC----CCCC----cccHH
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD---PFDEYRIAKAIIEAL---EG----SATN----LVELN 230 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~il~~l---~~----~~~~----~~~~~ 230 (674)
..|.|++..|.||||+|-.+.-. .....+ .+.++.... ......++..+--.+ +. .... .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR-A~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR-AVGHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH-HHHTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-HHHCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 45777777889999999665432 111222 233333322 223333433330000 00 0000 01123
Q ss_pred HHHHHHHHHcCCCeE-EEEEeCCCC---CChhhHHHHHHhhcCCCCCcEEEEEcCChh
Q 039885 231 ALLLRINESIAREKF-LLVLDDVWT---EDYNKWESFRRCLINGQRGSKILVTTRKET 284 (674)
Q Consensus 231 ~~~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 284 (674)
.....+++.+.+.+| |||||++-. -..-..+++...+........||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 344556666766555 999999821 112234566666766666788999999763
No 257
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.96 E-value=0.031 Score=54.33 Aligned_cols=55 Identities=13% Similarity=0.288 Sum_probs=31.9
Q ss_pred HHHHHHHcCCCeEEEEEeCCCCC-ChhhHHHHHHhhcCCCCCcEEEEEcCChhHHh
Q 039885 233 LLRINESIAREKFLLVLDDVWTE-DYNKWESFRRCLINGQRGSKILVTTRKETVAG 287 (674)
Q Consensus 233 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 287 (674)
.-.|.+.+-.++-+++||+--.. |...-..+...+.....|..||++|.+...+.
T Consensus 153 Rv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 34456666677779999986442 33333333333322123667888888766554
No 258
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.89 E-value=0.021 Score=58.69 Aligned_cols=91 Identities=23% Similarity=0.257 Sum_probs=52.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCccccccc----ceEEEEEeCCCCCHHHHHHHHHHHhhCCC------------CCc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHF----GKRIWVCVSDPFDEYRIAKAIIEALEGSA------------TNL 226 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~il~~l~~~~------------~~~ 226 (674)
.-.++.|+|++|+|||||+..++......... ..++|++....+....+ ..+.+..+... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 55799999999999999999887642111111 23488887666544443 23443332110 001
Q ss_pred ccHHHHHHHHHHHcC------CCeEEEEEeCCCC
Q 039885 227 VELNALLLRINESIA------REKFLLVLDDVWT 254 (674)
Q Consensus 227 ~~~~~~~~~l~~~l~------~kr~LlVlDdv~~ 254 (674)
....++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233444444443 4677999999854
No 259
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.88 E-value=0.02 Score=59.06 Aligned_cols=84 Identities=18% Similarity=0.110 Sum_probs=54.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSAT-----NLVELNALLLRIN 237 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (674)
...++.|.|.+|+||||||..+..... ..=..++|++....++.. .++.++.... ...+.+++.+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 345788999999999999988765321 122367899988776654 2344443211 1234566666666
Q ss_pred HHcCC-CeEEEEEeCCC
Q 039885 238 ESIAR-EKFLLVLDDVW 253 (674)
Q Consensus 238 ~~l~~-kr~LlVlDdv~ 253 (674)
...+. +--+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 65543 44599999874
No 260
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.86 E-value=0.03 Score=55.89 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=53.3
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccc--cceEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHH-HHHHH
Q 039885 166 TISLVGMGGIGKTTLAQFVYNDNDVINH--FGKRIWVCVSDPFDEYRIAKAIIEALEGSAT-----NLVELNAL-LLRIN 237 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~-~~~l~ 237 (674)
++-|.|++|+||||||..++... ... =..++||+....++.. .+++++.... ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~--~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY--MRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH--HHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH--HhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 68999999999999997776532 222 1357899988887764 2666665432 12344554 33333
Q ss_pred HH--c-CCCeEEEEEeCCCC
Q 039885 238 ES--I-AREKFLLVLDDVWT 254 (674)
Q Consensus 238 ~~--l-~~kr~LlVlDdv~~ 254 (674)
.. + .++.-|||+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 32 3 45678999998854
No 261
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.84 E-value=0.064 Score=52.31 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=33.0
Q ss_pred HHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC-CCCcEEEEEcCChhHHhh
Q 039885 233 LLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING-QRGSKILVTTRKETVAGM 288 (674)
Q Consensus 233 ~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~~ 288 (674)
.-.+.+.+..++-+++||+--. -|...-..+...+..- ..|..||++|.+...+..
T Consensus 154 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 211 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEF 211 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 3446667777788999998643 2333333333333221 236778888888665543
No 262
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.76 E-value=0.021 Score=58.66 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=53.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSAT-----NLVELNALLLRIN 237 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (674)
.-.++.|+|.+|+||||||..+..... ..=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 446899999999999999988875321 112357889888776653 2444443211 1234555555555
Q ss_pred HHcC-CCeEEEEEeCCCC
Q 039885 238 ESIA-REKFLLVLDDVWT 254 (674)
Q Consensus 238 ~~l~-~kr~LlVlDdv~~ 254 (674)
...+ .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 3456899998743
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.75 E-value=0.017 Score=57.90 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=44.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD-PFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA 241 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (674)
...+++|+|.+|+||||++..+.......... .+..+.... .....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 34699999999999999999887532211111 233444322 1223333333333332221111223344444443 3
Q ss_pred CCeEEEEEeCC
Q 039885 242 REKFLLVLDDV 252 (674)
Q Consensus 242 ~kr~LlVlDdv 252 (674)
.+.-++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 33457888943
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.63 E-value=0.033 Score=55.72 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|.+|+|||||++.++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999988764
No 265
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.60 E-value=0.079 Score=51.87 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=62.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccc-c--cc-----------ceEEEEEeCCCC----CHHH--------------HH
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVI-N--HF-----------GKRIWVCVSDPF----DEYR--------------IA 212 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--~F-----------~~~~wv~vs~~~----~~~~--------------~~ 212 (674)
.+++|+|+.|+|||||.+.++.-. .. + .+ ..+.| .+.+.. ++.+ -.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~ 108 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLDRDLF 108 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHHHHHHHHTCCCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHHHHhhhhcchHHHHH
Confidence 479999999999999999997531 10 0 00 01221 122221 2221 12
Q ss_pred HHHHHHhhCC-CC------CcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChh
Q 039885 213 KAIIEALEGS-AT------NLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKET 284 (674)
Q Consensus 213 ~~il~~l~~~-~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 284 (674)
.++++.++.. .. +.+.-+.-.-.+.+.+..++-+++||+--. -|...-..+...+..... .||++|.+..
T Consensus 109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~ 186 (263)
T 2pjz_A 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD 186 (263)
T ss_dssp HHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred HHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence 3444554433 11 112222333445666667778999998643 233444445555543333 6777777755
Q ss_pred HHh
Q 039885 285 VAG 287 (674)
Q Consensus 285 va~ 287 (674)
.+.
T Consensus 187 ~~~ 189 (263)
T 2pjz_A 187 MLN 189 (263)
T ss_dssp GGG
T ss_pred HHH
Confidence 443
No 266
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.59 E-value=0.08 Score=52.13 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=34.9
Q ss_pred HHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHhh
Q 039885 233 LLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAGM 288 (674)
Q Consensus 233 ~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~ 288 (674)
.-.|.+.|-.++-+|+||+--. -|...-..+...+... ..|..||++|.+...+..
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~ 222 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER 222 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh
Confidence 3446666777788999998643 2334444455555432 237778888888766543
No 267
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.59 E-value=0.017 Score=59.42 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=51.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCC-----CcccHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSAT-----NLVELNALLLRIN 237 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (674)
.-+++.|.|.+|+||||||..+..... ..=..++|++....++... ++.++.... +..+.+++.+.++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999988875322 1123578999887776542 344443211 1123444444444
Q ss_pred HHcC-CCeEEEEEeCCC
Q 039885 238 ESIA-REKFLLVLDDVW 253 (674)
Q Consensus 238 ~~l~-~kr~LlVlDdv~ 253 (674)
...+ .+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4332 344588999873
No 268
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.56 E-value=0.06 Score=55.14 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHhh
Q 039885 230 NALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAGM 288 (674)
Q Consensus 230 ~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~ 288 (674)
+.-.-.|.+.|..+.-+|++|+--. -|...-..+...+..- ..|..||++|.+..++..
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 3334457778888888999998643 2333334444444331 236778888888766554
No 269
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.56 E-value=0.071 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35799999999999999999965
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.52 E-value=0.0099 Score=56.19 Aligned_cols=38 Identities=26% Similarity=0.247 Sum_probs=28.7
Q ss_pred hHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc
Q 039885 145 EKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 145 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-+++|.+.+... .+...+|+|+|+.|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445666666543 12567999999999999999998876
No 271
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.47 E-value=0.013 Score=50.74 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=36.7
Q ss_pred cccccc--cccccccCCCCCcceeecCCCCcccccc-ccCCCcccEEEeccc
Q 039885 536 SRGMIR--EIPKEIEKLIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQR 584 (674)
Q Consensus 536 ~~~~l~--~lp~~i~~L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~ 584 (674)
+++.++ .+|..|. .+|++|+|++|.|+.||.. +..+.+|++|+|++|
T Consensus 16 s~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 16 GRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 777777 7886543 4688888888888888875 577888888888887
No 272
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.46 E-value=0.073 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999965
No 273
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.36 E-value=0.0098 Score=60.87 Aligned_cols=53 Identities=15% Similarity=-0.001 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCccc-ccccceEEEEEeCCC
Q 039885 147 STLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDV-INHFGKRIWVCVSDP 205 (674)
Q Consensus 147 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~ 205 (674)
-++++.+..-. .-..++|+|.+|+|||||++.+.+.... ...+. ++++-+.+.
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER 215 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDER 215 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSC
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCC
Confidence 45666666443 3457999999999999999988763111 11233 335666654
No 274
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.34 E-value=0.0091 Score=64.30 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=35.8
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.++|.+..++.+...+... .-|.++|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 5889999999888887643 24889999999999999999884
No 275
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.33 E-value=0.033 Score=56.19 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=31.8
Q ss_pred eechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc
Q 039885 140 CGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 140 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
+|-...+..+...+..... .....+|+|.|+.|+||||||+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4444455555555554432 34677999999999999999998865
No 276
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.31 E-value=0.0023 Score=59.29 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=18.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999955554
No 277
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.28 E-value=0.15 Score=50.61 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=33.8
Q ss_pred HHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhh-cCCCCCcEEEEEcCChhHHhh
Q 039885 234 LRINESIAREKFLLVLDDVWT-EDYNKWESFRRCL-INGQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 234 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l-~~~~~gs~IivTtR~~~va~~ 288 (674)
-.+.+.+..++-+++||+--. -|...-..+...+ .....|..||++|.+...+..
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224 (290)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc
Confidence 345566666777999998643 2344445555542 232346778888888765543
No 278
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.18 E-value=0.084 Score=51.40 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=63.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccc-cc---cceEEEEEeCC----CCCHH----------------------HHHHH
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVI-NH---FGKRIWVCVSD----PFDEY----------------------RIAKA 214 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~---F~~~~wv~vs~----~~~~~----------------------~~~~~ 214 (674)
.+++|+|+.|+|||||.+.++.-.... +. ...+.+|.-.. ..++. +-..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 579999999999999999997632110 11 01223332111 11111 12233
Q ss_pred HHHHhhCCC-----C-CcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhH
Q 039885 215 IIEALEGSA-----T-NLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETV 285 (674)
Q Consensus 215 il~~l~~~~-----~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~v 285 (674)
+++.++... . +.+..+.-.-.|.+.+..++-+++||+--. -|...-..+...+..- ..|..||++|.+...
T Consensus 112 ~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 112 ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 444443221 0 112222223345566666777999998643 2333444444444321 226678888887665
Q ss_pred Hh
Q 039885 286 AG 287 (674)
Q Consensus 286 a~ 287 (674)
+.
T Consensus 192 ~~ 193 (253)
T 2nq2_C 192 VV 193 (253)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.18 E-value=0.0091 Score=54.32 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.7
Q ss_pred EEEEEEecCCChHHHHHHHH
Q 039885 165 QTISLVGMGGIGKTTLAQFV 184 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v 184 (674)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 280
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.17 E-value=0.09 Score=50.06 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=31.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccc---c-ccceEEEEEeCCCCCHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVI---N-HFGKRIWVCVSDPFDEY 209 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~ 209 (674)
.-.+++|+|+.|+|||||++.++...... . .-...+|+.....+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 45789999999999999999987521111 1 12357787765544443
No 281
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.13 E-value=0.012 Score=54.69 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999874
No 282
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.12 E-value=0.29 Score=51.46 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999987764
No 283
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.07 E-value=0.13 Score=52.65 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcC--CCCCcEEEEEcCChhHHhh
Q 039885 230 NALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLIN--GQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 230 ~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~IivTtR~~~va~~ 288 (674)
++-.-.|.+.|..+.-+|+||+--. -|...-..+...+.. ...|..||++|.+...+..
T Consensus 143 q~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~ 204 (359)
T 3fvq_A 143 QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQ 204 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 3334456777777888999998533 233333333322221 1246778888888765544
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.05 E-value=0.0099 Score=54.45 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 285
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.03 E-value=0.01 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.117 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 286
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.95 E-value=0.058 Score=54.05 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45899999999999999999865
No 287
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.93 E-value=0.013 Score=53.70 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 288
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.92 E-value=0.074 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+++|+|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5799999999999999999965
No 289
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.91 E-value=0.074 Score=55.45 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=36.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccc----cccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVI----NHFGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
.-.++.|+|++|+|||||+..++-..... ..-..++|++....+....+. .+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 34689999999999999999664211111 122457888877766665543 3555554
No 290
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.88 E-value=0.017 Score=59.81 Aligned_cols=50 Identities=26% Similarity=0.290 Sum_probs=35.6
Q ss_pred ceeechhhHHHHHHHhcC--------CC-CCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 138 DVCGRVEEKSTLKSKLLG--------EG-SEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~--------~~-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.++|.+..++.+...+.. .. .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 378998888888887720 00 000113456889999999999999999874
No 291
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.88 E-value=0.13 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35799999999999999999965
No 292
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.85 E-value=0.088 Score=55.49 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=60.1
Q ss_pred HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHHHHHhhCC----
Q 039885 148 TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF-DEYRIAKAIIEALEGS---- 222 (674)
Q Consensus 148 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~---- 222 (674)
++++.|..-. .-..++|+|.+|+|||+|++.+.+.. .+.+-+.++++-+.+.. ...++.+++.+.-...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 5666665432 34568999999999999999887642 12344667788888755 3456666666542211
Q ss_pred --C-------CCcccHH-----HHHHHHHHHc---CCCeEEEEEeCC
Q 039885 223 --A-------TNLVELN-----ALLLRINESI---AREKFLLVLDDV 252 (674)
Q Consensus 223 --~-------~~~~~~~-----~~~~~l~~~l---~~kr~LlVlDdv 252 (674)
. .+..... ...-.+.+++ +++..||++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0 1111111 1122233444 579999999998
No 293
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.84 E-value=0.012 Score=55.09 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.77 E-value=0.017 Score=54.09 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|.|+|+.|+||||||+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999763
No 295
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.76 E-value=0.016 Score=57.80 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=43.2
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcCccccc-ccceEEEEEeCCCCCHHHHHHHHHHHh------hC-CCCCcccHHHHH
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYNDNDVIN-HFGKRIWVCVSDPFDEYRIAKAIIEAL------EG-SATNLVELNALL 233 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~il~~l------~~-~~~~~~~~~~~~ 233 (674)
....+|+|+|..|+||||||+.+........ .......|+...-+-.......+.... .. ..+...+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 3567999999999999999998876322111 122334435444333334444443221 00 013344555555
Q ss_pred HHHHHHcCC
Q 039885 234 LRINESIAR 242 (674)
Q Consensus 234 ~~l~~~l~~ 242 (674)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 555555443
No 296
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.76 E-value=0.14 Score=52.49 Aligned_cols=125 Identities=15% Similarity=0.115 Sum_probs=64.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccc---------------cccceEEEEEeCC----CCCHH---------------
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVI---------------NHFGKRIWVCVSD----PFDEY--------------- 209 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------~~F~~~~wv~vs~----~~~~~--------------- 209 (674)
-.+++|+|+.|+|||||.+.++--.... ..-..+.+|.-.. ..++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKD 108 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 3579999999999999999996521100 0001123332111 11111
Q ss_pred ---HHHHHHHHHhhCCC-----C-CcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEE
Q 039885 210 ---RIAKAIIEALEGSA-----T-NLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKIL 277 (674)
Q Consensus 210 ---~~~~~il~~l~~~~-----~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~Ii 277 (674)
+-..++++.++... + +.+.-+.-.-.|.+.|-.+.-+++||+--. -|...-..+...+..- ..|..||
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 188 (359)
T 2yyz_A 109 EVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSV 188 (359)
T ss_dssp HTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 12234455544321 1 122233334456777777888999998533 2333333333333321 1256788
Q ss_pred EEcCChhHHhh
Q 039885 278 VTTRKETVAGM 288 (674)
Q Consensus 278 vTtR~~~va~~ 288 (674)
++|.+...+..
T Consensus 189 ~vTHd~~~~~~ 199 (359)
T 2yyz_A 189 YVTHDQAEAMT 199 (359)
T ss_dssp EEESCHHHHHH
T ss_pred EEcCCHHHHHH
Confidence 88887665543
No 297
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.74 E-value=0.14 Score=52.43 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHhh
Q 039885 231 ALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAGM 288 (674)
Q Consensus 231 ~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~ 288 (674)
.-.-.|.+.|..+.-+++||+--. -|...-..+...+..- ..|..||++|.+...+..
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~ 211 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE 211 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 334456777777888999998533 2333333343333321 125678888888765544
No 298
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.74 E-value=0.014 Score=53.70 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 299
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.68 E-value=0.024 Score=57.59 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=31.3
Q ss_pred eechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc
Q 039885 140 CGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 140 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
|+-+.-.+++++.+...-. .+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3445556666666642221 23456789999999999999998876
No 300
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.67 E-value=0.23 Score=50.07 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=37.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEAL 219 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 219 (674)
.-.++.|.|.+|+||||||..++....... ..++|++.- .+..++...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 346899999999999999988875422222 456676554 56777777777654
No 301
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.63 E-value=0.16 Score=57.60 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=38.3
Q ss_pred cccCceeechhhHHHHHHHhcCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 134 IDVSDVCGRVEEKSTLKSKLLGEGSE-------QQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 134 ~~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+.-.++.|.++.+++|.+.+...-.. .....+-|.++|++|.|||.||+++++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 33456788888888888766432110 0123455789999999999999999985
No 302
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.63 E-value=0.013 Score=53.35 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999876
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.62 E-value=0.019 Score=53.18 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 304
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.60 E-value=0.026 Score=56.21 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.2
Q ss_pred CceEEEEEEecCCChHHHHHHHHhc
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999976
No 305
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.57 E-value=0.015 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999976
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.56 E-value=0.019 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999773
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.54 E-value=0.022 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|+|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 308
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.52 E-value=0.15 Score=52.56 Aligned_cols=125 Identities=17% Similarity=0.096 Sum_probs=64.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcc------------cc---cccceEEEEEeCC----CCCH---------------H
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDND------------VI---NHFGKRIWVCVSD----PFDE---------------Y 209 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~------------~~---~~F~~~~wv~vs~----~~~~---------------~ 209 (674)
-.+++|+|+.|+|||||.+.++--.. +. ..-..+.+|.-.. ..++ .
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 116 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD 116 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHH
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 35899999999999999999964211 00 0001122332110 0111 1
Q ss_pred ---HHHHHHHHHhhCCC------CCcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEE
Q 039885 210 ---RIAKAIIEALEGSA------TNLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKIL 277 (674)
Q Consensus 210 ---~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~Ii 277 (674)
+-..++++.++... .+.+.-+.-.-.|.+.|..+.-+++||+--. -|...-..+...+..- ..|..||
T Consensus 117 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 196 (372)
T 1v43_A 117 EIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196 (372)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 12334555554321 1122223334456677777788999998633 2333333343333321 1256788
Q ss_pred EEcCChhHHhh
Q 039885 278 VTTRKETVAGM 288 (674)
Q Consensus 278 vTtR~~~va~~ 288 (674)
++|.+...+..
T Consensus 197 ~vTHd~~~a~~ 207 (372)
T 1v43_A 197 YVTHDQVEAMT 207 (372)
T ss_dssp EEESCHHHHHH
T ss_pred EEeCCHHHHHH
Confidence 88887665543
No 309
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.51 E-value=0.13 Score=52.42 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=64.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccc-c--ccc------------eEEEEEeCCC------CCHHH-------------
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVI-N--HFG------------KRIWVCVSDP------FDEYR------------- 210 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--~F~------------~~~wv~vs~~------~~~~~------------- 210 (674)
.+++|+|+.|+|||||.+.++--.... + .|+ .+.+| .+. .++.+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~enl~~~~~~~~~~~ 104 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV--YQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE--CTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE--ecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 579999999999999999997532110 0 010 12222 221 12221
Q ss_pred --HHHHHHHHhhCCCC------CcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEE
Q 039885 211 --IAKAIIEALEGSAT------NLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVT 279 (674)
Q Consensus 211 --~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivT 279 (674)
-..++++.++.... +.+.-+.-.-.|.+.|-.+.-+++||+--. -|...-..+...+..- ..|..||++
T Consensus 105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v 184 (348)
T 3d31_A 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184 (348)
T ss_dssp HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 12334444443221 122233334456777878888999998533 2333333343333321 236678888
Q ss_pred cCChhHHhh
Q 039885 280 TRKETVAGM 288 (674)
Q Consensus 280 tR~~~va~~ 288 (674)
|.+...+..
T Consensus 185 THd~~~~~~ 193 (348)
T 3d31_A 185 THDQTEARI 193 (348)
T ss_dssp ESCHHHHHH
T ss_pred eCCHHHHHH
Confidence 887665443
No 310
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.41 E-value=0.099 Score=55.34 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=61.3
Q ss_pred HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC-HHHHHHHHHHHhhCC----
Q 039885 148 TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD-EYRIAKAIIEALEGS---- 222 (674)
Q Consensus 148 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~---- 222 (674)
++++.|..-. .-..++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+... ..++.+++.+.-...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 4566665433 33568999999999999999887742 123457788888887663 456666666532111
Q ss_pred ---C-------CCccc-----HHHHHHHHHHHcC---CCeEEEEEeCC
Q 039885 223 ---A-------TNLVE-----LNALLLRINESIA---REKFLLVLDDV 252 (674)
Q Consensus 223 ---~-------~~~~~-----~~~~~~~l~~~l~---~kr~LlVlDdv 252 (674)
. .+... .....-.+.++++ ++..|+++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0 01111 1122233455554 68999999998
No 311
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.41 E-value=0.018 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=20.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999997553
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.40 E-value=0.019 Score=53.81 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 313
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.36 E-value=0.02 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 314
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.35 E-value=0.031 Score=54.57 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc
Q 039885 146 KSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 146 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+++...+..... ......+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 134567899999999999999999876
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.35 E-value=0.015 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.6
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
|.|.|+|+.|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999876
No 316
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.34 E-value=0.024 Score=53.51 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 317
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.34 E-value=0.021 Score=53.98 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999874
No 318
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.31 E-value=0.023 Score=52.60 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 319
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.30 E-value=0.13 Score=51.58 Aligned_cols=107 Identities=18% Similarity=0.136 Sum_probs=53.7
Q ss_pred hhHHHHHHHhcCCCCC--CCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHH--HHHHHHHHHh
Q 039885 144 EEKSTLKSKLLGEGSE--QQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEY--RIAKAIIEAL 219 (674)
Q Consensus 144 ~~~~~l~~~L~~~~~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~il~~l 219 (674)
.-.++|.+.|....+- ......+|.|+|.+|+||||++..++.... ..=..+.++.. +.+... +-+...++..
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAA-DTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEE-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEcc-ccccHHHHHHHHHHHHHc
Confidence 3445555555432110 023568999999999999999998876322 11112334443 333322 2223344443
Q ss_pred hCCC---CCcccHHHH-HHHHHHHcCCCeEEEEEeCCC
Q 039885 220 EGSA---TNLVELNAL-LLRINESIAREKFLLVLDDVW 253 (674)
Q Consensus 220 ~~~~---~~~~~~~~~-~~~l~~~l~~kr~LlVlDdv~ 253 (674)
+... ....+...+ ...+...+..+.-++|+|-.-
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 3211 111122222 334444454455588889663
No 320
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.29 E-value=0.022 Score=55.60 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 557899999999999999998876
No 321
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.29 E-value=0.026 Score=53.07 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998763
No 322
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.24 E-value=0.017 Score=54.11 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.23 E-value=0.021 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 324
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.21 E-value=0.07 Score=56.34 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=49.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC-HHHHHHHHHHHhh--------CCCCCcccHHH----
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD-EYRIAKAIIEALE--------GSATNLVELNA---- 231 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~---- 231 (674)
..++|+|..|+|||||++.+...... .+-+.++++.+.+..+ ..+++.++...-. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 35889999999999999988774221 1224556677766542 3344444433200 00111111111
Q ss_pred HHHHHHHHc---CCCeEEEEEeCCC
Q 039885 232 LLLRINESI---AREKFLLVLDDVW 253 (674)
Q Consensus 232 ~~~~l~~~l---~~kr~LlVlDdv~ 253 (674)
..-.+.+++ ++++.|+++||+.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111233433 5899999999993
No 325
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.20 E-value=0.027 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999987
No 326
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.17 E-value=0.13 Score=53.27 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=67.2
Q ss_pred cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccCCCCCcceeecCCCCccccc
Q 039885 490 SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEKLIHLRFLQLRDLMIDELPE 568 (674)
Q Consensus 490 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lP~ 568 (674)
.+.++..|+.+.+..+ +..+-...|.++..|+.+.+ .. .+..++ ..+.++.+|+.+.+.++.++.+++
T Consensus 235 ~f~~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~~i~l-------~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~ 303 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN---VTSIGSFLLQNCTALKTLNF-------YA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEP 303 (379)
T ss_dssp TTTTCSSCCEEEECTT---CCEECTTTTTTCTTCCEEEE-------CC-CCSEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred cccCCccceEEEcCCC---ccEeCccccceeehhccccc-------cc-cceeccccccccccccccccccccccceehh
Confidence 3456667777776554 22333445677777777777 43 244444 346677788888887777777765
Q ss_pred -cccCCCcccEEEecccccccccccc-ccccCccCCeeee
Q 039885 569 -TCCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSE 606 (674)
Q Consensus 569 -~i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l 606 (674)
.+.++.+|+.+.|..+ +..++. .|.++++|+.+.+
T Consensus 304 ~aF~~c~~L~~i~lp~~---l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTA---LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCCCCC
T ss_pred hhhcCCCCCCEEEcCcc---ccEEHHHHhhCCCCCCEEEE
Confidence 4677778888887654 566654 3777777877766
No 327
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.16 E-value=0.03 Score=51.63 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999774
No 328
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.13 E-value=0.024 Score=55.35 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+|.|+|++|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998763
No 329
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.13 E-value=0.023 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999764
No 330
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.10 E-value=0.019 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999763
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.09 E-value=0.025 Score=53.06 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
No 332
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.08 E-value=0.019 Score=52.73 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 333
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.08 E-value=0.024 Score=53.07 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999976
No 334
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.08 E-value=0.029 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|.|.|+.|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 335
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.07 E-value=0.027 Score=56.89 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=20.9
Q ss_pred CceEEEEEEecCCChHHHHHHHHhc
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
++.+||+|.|-|||||||.|-.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3679999999999999998876644
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.06 E-value=0.026 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
No 337
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.06 E-value=0.026 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|.|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998876
No 338
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.05 E-value=0.18 Score=52.29 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 35799999999999999999975
No 339
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.04 E-value=0.023 Score=51.40 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=20.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.03 E-value=0.026 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 341
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.00 E-value=0.02 Score=53.81 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|.|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999763
No 342
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.96 E-value=0.03 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 343
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.93 E-value=0.031 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|.|.|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 344
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.93 E-value=0.026 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 345
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.91 E-value=0.036 Score=56.91 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=59.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCH--HHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDE--YRIAKAIIEALEGSATNLVELNALLLRINESIAR 242 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (674)
.+++|+|+.|+|||||.+.+.... .......+ +.+.++... ... ..++.+.. ...+.......+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~--~~~~~~~i-~t~ed~~e~~~~~~-~~~v~q~~----~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL--NNTKYHHI-LTIEDPIEFVHESK-KCLVNQRE----VHRDTLGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH--HHHCCCEE-EEEESSCCSCCCCS-SSEEEEEE----BTTTBSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc--cCCCCcEE-EEccCcHHhhhhcc-ccceeeee----eccccCCHHHHHHHHhhh
Confidence 489999999999999999886521 11111222 122221110 000 00000000 000112344578888888
Q ss_pred CeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHH
Q 039885 243 EKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVA 286 (674)
Q Consensus 243 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va 286 (674)
..=+|++|++.+ .+.+..+..... .|..||+||.....+
T Consensus 196 ~PdvillDEp~d--~e~~~~~~~~~~---~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRD--LETIRLALTAAE---TGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHHH---TTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCC--HHHHHHHHHHHh---cCCEEEEEEccChHH
Confidence 888999999963 455665544432 366688888765544
No 346
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.87 E-value=0.023 Score=51.84 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
+|.|+|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 347
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.82 E-value=0.023 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998875
No 348
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.82 E-value=0.27 Score=54.18 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.-.+++|+|+.|.|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999865
No 349
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.81 E-value=0.033 Score=52.76 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.0
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcC
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+||.|.|++|+||||.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998863
No 350
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.80 E-value=0.24 Score=50.71 Aligned_cols=38 Identities=24% Similarity=0.130 Sum_probs=29.4
Q ss_pred hHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 145 EKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 145 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.--++++.|..-. .-..++|+|.+|+|||+|++.+.+.
T Consensus 161 tGiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 161 YSTRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred ccchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHH
Confidence 3457778776543 3456899999999999999988874
No 351
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.79 E-value=0.031 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 352
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.78 E-value=0.021 Score=52.54 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 353
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.78 E-value=0.14 Score=51.99 Aligned_cols=54 Identities=11% Similarity=0.006 Sum_probs=37.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEG 221 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 221 (674)
..++.|.|.+|+||||||..++..... .=..++|++. ..+..++...++.....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~~ 99 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLTS 99 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHHC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhhC
Confidence 357999999999999999888764322 1124555544 55778888887766543
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.76 E-value=0.034 Score=51.38 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 355
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.73 E-value=0.34 Score=50.87 Aligned_cols=25 Identities=40% Similarity=0.283 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888753
No 356
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.71 E-value=0.034 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999774
No 357
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.71 E-value=0.049 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999888764
No 358
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.69 E-value=0.033 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|.|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 359
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.68 E-value=0.043 Score=58.71 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=53.4
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHH---------
Q 039885 166 TISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRI--------- 236 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l--------- 236 (674)
.+.|.|.+|.||||++..+....... ....++.+ ....... +.|.+.++.. ..+...+...-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~-~~~~il~~-a~T~~Aa----~~l~~~~~~~---~~T~h~~~~~~~~~~~~~~~ 117 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST-GETGIILA-APTHAAK----KILSKLSGKE---ASTIHSILKINPVTYEENVL 117 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-TCCCEEEE-ESSHHHH----HHHHHHHSSC---EEEHHHHHTEEEEECSSCEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCceEEEe-cCcHHHH----HHHHhhhccc---hhhHHHHhccCcccccccch
Confidence 79999999999999998887642211 11223333 2221111 1222222111 11211111000
Q ss_pred ---H-HHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcC
Q 039885 237 ---N-ESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTR 281 (674)
Q Consensus 237 ---~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR 281 (674)
. .....+.-+||+|++...+...+..+...++ .+.++++.--
T Consensus 118 ~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD 163 (459)
T 3upu_A 118 FEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGD 163 (459)
T ss_dssp EEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEEC
T ss_pred hcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECC
Confidence 0 0000123489999998777677777777665 4566776654
No 360
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.64 E-value=0.037 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|+|+|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 567999999999999999998876
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.64 E-value=0.034 Score=52.04 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|.|+|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999876
No 362
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.64 E-value=0.032 Score=50.52 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998863
No 363
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.63 E-value=0.043 Score=49.22 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.-.+++|+|+.|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999876
No 364
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.62 E-value=0.035 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999876
No 365
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.61 E-value=0.033 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 366
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.61 E-value=0.025 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 367
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.58 E-value=0.071 Score=53.66 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 368
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.56 E-value=0.034 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.-.+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999876
No 369
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.54 E-value=0.11 Score=54.20 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=73.9
Q ss_pred CceeEEEEEcCCcCCccccccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccCC
Q 039885 472 EKLRHSMLMLGFEASFPDSLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEKL 550 (674)
Q Consensus 472 ~~~r~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L 550 (674)
..+..+.+..+...--...+..+..+..+...... + ....|..+.+|+.+.+ ..+ ++.++ ..+.++
T Consensus 253 ~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~--i---~~~~F~~~~~L~~i~l-------~~~-i~~I~~~aF~~c 319 (394)
T 4fs7_A 253 TDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI--V---PEKTFYGCSSLTEVKL-------LDS-VKFIGEEAFESC 319 (394)
T ss_dssp SSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE--E---CTTTTTTCTTCCEEEE-------CTT-CCEECTTTTTTC
T ss_pred ccceeEEcCCCcceeeccccccccccceeccCcee--e---cccccccccccccccc-------ccc-cceechhhhcCC
Confidence 44555555444332222345566777776665443 2 2334677778888887 443 55554 456777
Q ss_pred CCCcceeecCCCCccccc-cccCCCcccEEEecccccccccccc-ccccCccCCeeee
Q 039885 551 IHLRFLQLRDLMIDELPE-TCCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSE 606 (674)
Q Consensus 551 ~~Lr~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l 606 (674)
.+|+.++|..+ ++.++. .+.++.+|+.+++..+ +..++. .|.++.+|+.+.+
T Consensus 320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS---LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT---CCEECTTTBTTCTTCCEEEE
T ss_pred CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc---ccEehHHHhhCCCCCCEEEE
Confidence 88888888543 677754 4677788888888755 566654 4788888888877
No 370
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.53 E-value=0.065 Score=54.32 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=22.7
Q ss_pred CceEEEEEEecCCChHHHHHHHHhcC
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+...+++|+|+.|+||||+++.+..-
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999988763
No 371
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.51 E-value=0.035 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 372
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.50 E-value=0.9 Score=58.40 Aligned_cols=190 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHc-----C
Q 039885 167 ISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESI-----A 241 (674)
Q Consensus 167 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~ 241 (674)
|.++|++|+|||++|+.+.....- -..+.++.+...+...+.+.+-..+......... . .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~----~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-----------~~~P~~~ 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSL----YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-----------TLLPKSD 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSS----CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-----------EEEEBSS
T ss_pred EEEECCCCCCHHHHHHHHHhcCCC----CceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-----------cccCCCC
Q ss_pred CCeEEEEEeCCCCCChh------hHHHHHHhhcCCC------------CCcEEEEEcCChh-------HHhhcCCCCeEe
Q 039885 242 REKFLLVLDDVWTEDYN------KWESFRRCLINGQ------------RGSKILVTTRKET-------VAGMMESTDVIS 296 (674)
Q Consensus 242 ~kr~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~IivTtR~~~-------va~~~~~~~~~~ 296 (674)
+++.++.+||+.-...+ ..+.+...+..++ .+..+|.++-... -.+...-...+.
T Consensus 1335 gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~ 1414 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILY 1414 (2695)
T ss_dssp SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEE
T ss_pred CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEE
Q ss_pred CCCCChHhhHHHHHHHhhcCCCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHhccCCChHHHHHHHhhhccccccccC-
Q 039885 297 IKELSERECWSLFERIAFFNRPSLECEQLEEFGRKIVSKCKGLPLAVKTIGSLLRFKRSLRVWQSILDSQMWQLEEFER- 375 (674)
Q Consensus 297 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~l~~~~~- 375 (674)
+...+.++-..+|.....+.-... +++..++..|+... .+.|..+.+...-. ..+..
T Consensus 1415 i~~P~~~~l~~I~~~il~~~l~~~--~~v~~~~~~lv~at-------------------i~~y~~v~~~~~~~-~k~HY~ 1472 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYKAIFKLV--PEFRSYTEPFARAS-------------------VHLYNECKARYSTG-LQSHYL 1472 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHHHHTTSS--GGGGGGHHHHHHHH-------------------HHHHHHHHHHSCTT-TCTTCC
T ss_pred eCCCCHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCc-cCCCcc
Q ss_pred -------------------CcccChhhHHHHHHHhcc
Q 039885 376 -------------------DYRMDKDELIKLWLAQGY 393 (674)
Q Consensus 376 -------------------~~~~~~~~li~~Wiaeg~ 393 (674)
...-..+.++++|+-|.+
T Consensus 1473 FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~ 1509 (2695)
T 4akg_A 1473 FSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAW 1509 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHH
No 373
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.50 E-value=0.041 Score=53.39 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|+|+|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998865
No 374
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.49 E-value=0.15 Score=54.16 Aligned_cols=42 Identities=31% Similarity=0.460 Sum_probs=29.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFD 207 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 207 (674)
...+++|+|..|+|||||++.+..-.. .....+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccc
Confidence 467999999999999999999876321 123455555444444
No 375
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.44 E-value=0.09 Score=53.43 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=55.3
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcCCCe
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIAREK 244 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 244 (674)
.+++|+|+.|.|||||++.+..-.. .-...+.+.-......... + ..+..- .+ ........+...+..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~~-~g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQLF-FG--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEEE-CB--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEEE-eC--CChhHHHHHHHHhhhCC
Confidence 4799999999999999999976321 1234444432221110000 0 000000 00 11233455677787788
Q ss_pred EEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChh
Q 039885 245 FLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKET 284 (674)
Q Consensus 245 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 284 (674)
-+|++|++... +.++.+ ..+..+ +.-+|+||....
T Consensus 242 ~ilildE~~~~--e~~~~l-~~~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRSS--EAYDFY-NVLCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCST--HHHHHH-HHHHTT--CCCEEEEEECSS
T ss_pred CEEEEcCCChH--HHHHHH-HHHhcC--CCEEEEEEcccH
Confidence 89999999652 445444 334332 222566665433
No 376
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.44 E-value=0.24 Score=47.46 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=52.0
Q ss_pred hHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC-ccccccc-ceEEEEEeCCCCCHHHHHHHHHHHhhCC
Q 039885 145 EKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND-NDVINHF-GKRIWVCVSDPFDEYRIAKAIIEALEGS 222 (674)
Q Consensus 145 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F-~~~~wv~vs~~~~~~~~~~~il~~l~~~ 222 (674)
..++++..+.. .+.+.|+|..|+||||+.....-+ ....... ...+.+..........+.+.+...++..
T Consensus 65 ~q~~~i~~i~~--------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 65 FESEILEAISQ--------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GHHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhc--------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 34555555542 246899999999999876544322 1111222 2233333333223334444444433321
Q ss_pred CC---------------C-----cccHHHHHHHHHHHcCCCeEEEEEeCCCCC
Q 039885 223 AT---------------N-----LVELNALLLRINESIAREKFLLVLDDVWTE 255 (674)
Q Consensus 223 ~~---------------~-----~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 255 (674)
.. . ..+.+.+...+...+.+- -+||+|+++..
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 137 PGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp TTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred cCceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 10 0 123456666666544433 37899999763
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.43 E-value=0.037 Score=51.25 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 378
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.40 E-value=0.34 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|+|||||.+.++-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35799999999999999999964
No 379
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.39 E-value=0.049 Score=51.64 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=28.2
Q ss_pred hhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 143 VEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 143 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
++..+.+...+. ....++|+|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~------~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALR------ESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHH------HHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc------ccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455555443 225689999999999999999888764
No 380
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.38 E-value=0.047 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.4
Q ss_pred CceEEEEEEecCCChHHHHHHHHhc
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
....+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998876
No 381
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.37 E-value=0.17 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..++|.|+|.+|+||||++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999988875
No 382
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.36 E-value=0.04 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 383
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.35 E-value=0.38 Score=51.60 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCC---CCCceEEEEEEecCCChHHHHHHHHhc
Q 039885 146 KSTLKSKLLGEGSE---QQNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 146 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.++|.++|...... .....++|+|+|.+|+||||++..+..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45555655432211 023578999999999999999988875
No 384
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.32 E-value=0.033 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999876
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.30 E-value=0.026 Score=53.28 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 386
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.28 E-value=0.041 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999998875
No 387
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.28 E-value=0.04 Score=51.86 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+|.|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 388
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.25 E-value=0.41 Score=49.80 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=64.3
Q ss_pred cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEeccccccccccccccccccccCCCCCcceeecCCCCccccc-
Q 039885 490 SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIPKEIEKLIHLRFLQLRDLMIDELPE- 568 (674)
Q Consensus 490 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lP~- 568 (674)
.+..+..|+.+.+..+. .......|..+..|+.+.+ ..+.+.. ..+....+|+.+.+..+ ++.+++
T Consensus 248 ~f~~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~-------~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~ 314 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIY-------GSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEE 314 (394)
T ss_dssp TTTTCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEE-------CSSEECT--TTTTTCTTCCEEEECTT-CCEECTT
T ss_pred cccccccceeEEcCCCc---ceeeccccccccccceecc-------Cceeecc--ccccccccccccccccc-cceechh
Confidence 34556667777666543 1223344666677777666 4433211 34567778888888654 666765
Q ss_pred cccCCCcccEEEecccccccccccc-ccccCccCCeeee
Q 039885 569 TCCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSE 606 (674)
Q Consensus 569 ~i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l 606 (674)
.+.++.+|+.+++..+ +..++. .|.++++|+.+.+
T Consensus 315 aF~~c~~L~~i~lp~~---v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL---VEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TTTTCTTCCEECCCTT---CCEECTTTTTTCTTCCEECC
T ss_pred hhcCCCCCCEEEeCCc---ccEEhHHhccCCCCCCEEEE
Confidence 4677888888888654 666754 4788888888877
No 389
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.25 E-value=0.22 Score=52.13 Aligned_cols=24 Identities=38% Similarity=0.274 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..++.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999888753
No 390
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.23 E-value=0.19 Score=50.07 Aligned_cols=24 Identities=38% Similarity=0.274 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988763
No 391
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.22 E-value=0.042 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998763
No 392
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.20 E-value=0.044 Score=50.90 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=55.4
Q ss_pred cCCCCceEEEecCC-Ccccc----cchhHhhccCCceeEEEecccccccccccccc-----ccccccCCCCCcceeecCC
Q 039885 492 LNAKKLRSFLISSP-YDVFS----SVLPRLFDQLTCLRTLKIVAHDRRWSRGMIRE-----IPKEIEKLIHLRFLQLRDL 561 (674)
Q Consensus 492 ~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~-----lp~~i~~L~~Lr~L~L~~~ 561 (674)
.+-+.|+.|+++++ . +. ..+...+..-+.|+.|+| ++|.+.. +-+.+..-+.|+.|+|++|
T Consensus 38 ~~n~~L~~L~L~~nn~--igd~ga~~la~aL~~N~~L~~L~L-------~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKR--VSKERIRSLIEAACNSKHIEKFSL-------ANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TTCSSCCEEECTTCCS--SCHHHHHHHHHHHTTCSCCCEEEC-------TTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred hcCCCccEEECCCCCC--CCHHHHHHHHHHHhhCCCcCEEEc-------cCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 34556667776654 3 21 113344555566777777 6666542 2333444456777777777
Q ss_pred CCc-----cccccccCCCcccEEEeccccc-ccc-----ccccccccCccCCeeee
Q 039885 562 MID-----ELPETCCELFNLQTLEIRQRGY-YLR-----RLPHGFGRLVNLRHLSE 606 (674)
Q Consensus 562 ~i~-----~lP~~i~~L~~L~~L~l~~~~~-~~~-----~lP~~i~~L~~L~~L~l 606 (674)
.|+ .|-+.+..-+.|+.|+|++|.. .++ .+-..+..-++|..|++
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l 164 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI 164 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence 665 3334455555577777765411 112 12333444455666655
No 393
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.20 E-value=0.029 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=16.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 394
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.20 E-value=0.043 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 395
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.19 E-value=0.095 Score=57.58 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=54.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCCcccHHHHHHHHHHHcC---
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATNLVELNALLLRINESIA--- 241 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~--- 241 (674)
+++.|.|.+|.||||++..+...... . ...+.+.......... +.+.++.. ..++..+.......+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~-~--g~~Vl~~ApT~~Aa~~----L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAES-L--GLEVGLCAPTGKAARR----LGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHH-T--TCCEEEEESSHHHHHH----HHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh-c--CCeEEEecCcHHHHHH----hHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 57889999999999999888763221 1 2334444443222222 22222211 1122211100000000
Q ss_pred ---CCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEc
Q 039885 242 ---REKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTT 280 (674)
Q Consensus 242 ---~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTt 280 (674)
.+--+||+|++...+...+..+...++ .|.++|+.-
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 022489999997776666777766655 456777654
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.16 E-value=0.049 Score=49.83 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|.|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 397
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.16 E-value=0.066 Score=46.20 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=43.9
Q ss_pred cceeecCCCCc--cccccccCCCcccEEEeccccccccccccc-cccCccCCeeeeeeeC
Q 039885 554 RFLQLRDLMID--ELPETCCELFNLQTLEIRQRGYYLRRLPHG-FGRLVNLRHLSEFVVG 610 (674)
Q Consensus 554 r~L~L~~~~i~--~lP~~i~~L~~L~~L~l~~~~~~~~~lP~~-i~~L~~L~~L~l~~~~ 610 (674)
..++.+++.++ .+|..+. .+|++|+|++| .+..+|.+ |..+++|++|++..|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N--~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN--NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS--CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC--cCCccChhhhhhccccCEEEecCCC
Confidence 36788888888 9997543 47999999999 79999876 7899999999996554
No 398
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.13 E-value=0.042 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..|.|.|++|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.11 E-value=0.055 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|+|+|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998873
No 400
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.08 E-value=0.056 Score=52.32 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 401
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.08 E-value=0.045 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 402
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.04 E-value=0.047 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 403
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.02 E-value=0.054 Score=51.12 Aligned_cols=25 Identities=36% Similarity=0.351 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|.|.|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998763
No 404
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.99 E-value=0.063 Score=49.91 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 146 KSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 146 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+..+..++... +.-..+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55566666431 12346899999999999999888874
No 405
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.98 E-value=0.021 Score=53.12 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=58.8
Q ss_pred chhHhhccCCceeEEEecccccccccc-cccc-----ccccccCCCCCcceeecCCCCc-----cccccccCCCcccEEE
Q 039885 512 VLPRLFDQLTCLRTLKIVAHDRRWSRG-MIRE-----IPKEIEKLIHLRFLQLRDLMID-----ELPETCCELFNLQTLE 580 (674)
Q Consensus 512 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~-~l~~-----lp~~i~~L~~Lr~L~L~~~~i~-----~lP~~i~~L~~L~~L~ 580 (674)
.+...+.+-+.|+.|+| +++ .+.. +-+.+..-++|+.|+|++|.|+ .|-+.+..-+.|++|+
T Consensus 32 ~l~~ll~~n~~L~~L~L-------~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNI-------NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp HHHHHHTTCSSCCEEEC-------TTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred HHHHHHhcCCCccEEEC-------CCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence 34555667788999999 764 5532 4456666778999999999876 4555566667888888
Q ss_pred ecccccccc-----ccccccccCccCCeeeee
Q 039885 581 IRQRGYYLR-----RLPHGFGRLVNLRHLSEF 607 (674)
Q Consensus 581 l~~~~~~~~-----~lP~~i~~L~~L~~L~l~ 607 (674)
|++| .++ .|-+.+..-+.|++|++.
T Consensus 105 L~~N--~Ig~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 105 VESN--FLTPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp CCSS--BCCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred cCCC--cCCHHHHHHHHHHHhhCCceeEEECC
Confidence 8888 343 233344555567777774
No 406
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.97 E-value=0.1 Score=54.61 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=56.4
Q ss_pred HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccc----eEEEEEeCCCC-CHHHHHHHHHHHhhCC
Q 039885 148 TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFG----KRIWVCVSDPF-DEYRIAKAIIEALEGS 222 (674)
Q Consensus 148 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~il~~l~~~ 222 (674)
+.++.|..-. .-..++|+|..|+|||+|+..+.+.... +-+ .++++-+.+.. ...++.+++.+.-...
T Consensus 140 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~ 212 (465)
T 3vr4_D 140 SAIDHLNTLV-----RGQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID 212 (465)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG
T ss_pred eEEecccccc-----cCCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc
Confidence 4556565433 2234789999999999999999875332 223 55677777644 3445556554431110
Q ss_pred -------CCCcccHH-----HHHHHHHHHc---CCCeEEEEEeCC
Q 039885 223 -------ATNLVELN-----ALLLRINESI---AREKFLLVLDDV 252 (674)
Q Consensus 223 -------~~~~~~~~-----~~~~~l~~~l---~~kr~LlVlDdv 252 (674)
+.+..... ...-.+.+++ +++..|+++||+
T Consensus 213 rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 213 RSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11111111 1122345555 378999999998
No 407
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.94 E-value=0.048 Score=51.60 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.0
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 408
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.92 E-value=0.037 Score=50.33 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988763
No 409
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.83 E-value=0.079 Score=48.84 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 410
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.80 E-value=0.06 Score=53.95 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 411
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.79 E-value=0.25 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999998864
No 412
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.77 E-value=0.052 Score=51.36 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.0
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 413
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.76 E-value=0.046 Score=50.64 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988763
No 414
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.75 E-value=0.053 Score=50.66 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+|+|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 415
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.74 E-value=0.045 Score=52.08 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999976
No 416
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.73 E-value=0.59 Score=48.52 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=32.8
Q ss_pred ceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 138 DVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 138 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.++|....+.++.+.+..-.. .... |.|.|..|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 467777777777766553221 1333 489999999999999998763
No 417
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.71 E-value=0.55 Score=51.74 Aligned_cols=124 Identities=10% Similarity=0.061 Sum_probs=65.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccc-cc-c-c-eEEEEEeC--CC--CCHH--------------HHHHHHHHHhhCC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVI-NH-F-G-KRIWVCVS--DP--FDEY--------------RIAKAIIEALEGS 222 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~-F-~-~~~wv~vs--~~--~~~~--------------~~~~~il~~l~~~ 222 (674)
.+++|+|+.|+|||||++.++--.... +. . . .+.++.-. .. .++. ....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 469999999999999999997632211 10 0 0 12222111 00 1121 2223344444432
Q ss_pred C------CCcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHhh
Q 039885 223 A------TNLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAGM 288 (674)
Q Consensus 223 ~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~ 288 (674)
. ...+.-+.-.-.|.+.|..+.=+|+||.--. -|...-..+...+... ..|..||++|.+...+..
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~ 533 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY 533 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 1 1222333344557788888888999998533 2333333333333321 235678888887765554
No 418
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.71 E-value=0.083 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35799999999999999999975
No 419
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.67 E-value=0.063 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 420
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.65 E-value=0.3 Score=53.79 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35799999999999999999965
No 421
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.62 E-value=0.27 Score=51.27 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=28.6
Q ss_pred cccCCCCCcceeecCCCCcccccc-ccCCCcccEEEecccccccccccc-ccccCccCCeeee
Q 039885 546 EIEKLIHLRFLQLRDLMIDELPET-CCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSE 606 (674)
Q Consensus 546 ~i~~L~~Lr~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l 606 (674)
.+.++..|+.+.+. +.++.+|.. +.++.+|+.++|..+ +..++. .|.++.+|+.+.+
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~---v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG---ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCEEEE
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc---ccEehHhHhhCCCCCCEEEE
Confidence 34455555555553 234455442 445555555555543 444433 2555555655555
No 422
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.62 E-value=0.057 Score=52.22 Aligned_cols=24 Identities=38% Similarity=0.371 Sum_probs=20.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999999998873
No 423
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.52 E-value=0.059 Score=52.01 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999965
No 424
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.52 E-value=0.062 Score=51.31 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999965
No 425
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.51 E-value=0.36 Score=52.20 Aligned_cols=55 Identities=11% Similarity=-0.067 Sum_probs=36.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
.-.++.|.|.+|+||||||..++.+.... +=..++|++.. .+..++...++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E--~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLE--ESVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEecc--CCHHHHHHHHHHHHc
Confidence 34678999999999999998887642221 11245666554 467777777765543
No 426
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.51 E-value=0.1 Score=53.68 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhc
Q 039885 146 KSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 146 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..++.+.+... .....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23568999999999999999988865
No 427
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.43 E-value=0.093 Score=51.73 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999964
No 428
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.34 E-value=0.049 Score=52.90 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 429
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.34 E-value=0.064 Score=50.22 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 430
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.32 E-value=0.045 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=16.3
Q ss_pred eEEEEEEecCCChHHHHHHHHh-c
Q 039885 164 VQTISLVGMGGIGKTTLAQFVY-N 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~-~ 186 (674)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 431
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.32 E-value=0.098 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999965
No 432
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.29 E-value=0.59 Score=51.52 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=66.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcCccc-ccc--cc-eEEEEEeCC----CCCHHHHHH--------------HHHHHhhCC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDV-INH--FG-KRIWVCVSD----PFDEYRIAK--------------AIIEALEGS 222 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~-~~~wv~vs~----~~~~~~~~~--------------~il~~l~~~ 222 (674)
.+++|+|+.|+|||||++.++.-... .+. +. .+.++.-.. ..++.+.+. ++++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 58999999999999999999864221 111 11 233432211 123333322 223333322
Q ss_pred CC------CcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCC--CCCcEEEEEcCChhHHhh
Q 039885 223 AT------NLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLING--QRGSKILVTTRKETVAGM 288 (674)
Q Consensus 223 ~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~ 288 (674)
.. ..+..+.-.-.|.+.|..+.-+++||+--. -|...-..+...+..- ..|..||++|.+...+..
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 11 112223334456677777888999998533 2333333344443321 235678888887765554
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.27 E-value=0.066 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
No 434
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.27 E-value=0.069 Score=54.09 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999876
No 435
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.18 E-value=0.11 Score=54.80 Aligned_cols=51 Identities=20% Similarity=0.327 Sum_probs=35.4
Q ss_pred CceeechhhHHHHHHHhcCC--------CCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 137 SDVCGRVEEKSTLKSKLLGE--------GSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..++|.+..++.+...+... .-......+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45889888888887666221 0000112356889999999999999999874
No 436
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.15 E-value=0.073 Score=50.28 Aligned_cols=21 Identities=43% Similarity=0.532 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 437
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.14 E-value=0.068 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..++++|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988763
No 438
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.08 E-value=0.11 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 439
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.08 E-value=0.095 Score=58.17 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=35.9
Q ss_pred CceeechhhHHHHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 137 SDVCGRVEEKSTLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 137 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+++|.+..++.+...+... ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 36899988888888777643 36899999999999999999874
No 440
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.07 E-value=0.073 Score=50.97 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.03 E-value=0.075 Score=49.95 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+|.|.|++|+||||.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998863
No 442
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.02 E-value=0.083 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999998876
No 443
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.01 E-value=1 Score=52.08 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=65.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccc----eEEEEEeCCC-------CCHH-----------HHHHHHHHHhhCC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFG----KRIWVCVSDP-------FDEY-----------RIAKAIIEALEGS 222 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~-------~~~~-----------~~~~~il~~l~~~ 222 (674)
.+++|+|+.|+|||||.+.+..- .+. .++ .. .+.+.+. .+.. +-..++++.++..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~-~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECR-TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSC-EEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCcccccee-EEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 57999999999999999999731 110 011 01 1222221 1221 2233455555432
Q ss_pred C-------CCcccHHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHHHHHHhhcCCCCCcEEEEEcCChhHHhh
Q 039885 223 A-------TNLVELNALLLRINESIAREKFLLVLDDVWT-EDYNKWESFRRCLINGQRGSKILVTTRKETVAGM 288 (674)
Q Consensus 223 ~-------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~ 288 (674)
. .+.+..+...-.|.+.+-.+.-+|+||.--. -|...-..+...+.. .|..||++|.+......
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 1 1122233334446666667778999998643 233444455555544 46678888887665543
No 444
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.99 E-value=0.074 Score=50.69 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 445
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.99 E-value=0.25 Score=49.22 Aligned_cols=24 Identities=42% Similarity=0.349 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..+++++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999888753
No 446
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.98 E-value=0.82 Score=50.34 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.-.+++|+|+.|+|||||.+.+..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 345899999999999999999865
No 447
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.97 E-value=0.09 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 448
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.88 E-value=0.059 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.214 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+++|+|+.|+|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998875
No 449
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.87 E-value=0.11 Score=54.33 Aligned_cols=100 Identities=9% Similarity=0.077 Sum_probs=55.8
Q ss_pred HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccc--------cccc-eEEEEEeCCCC-CHHHHHHHHHH
Q 039885 148 TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVI--------NHFG-KRIWVCVSDPF-DEYRIAKAIIE 217 (674)
Q Consensus 148 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~il~ 217 (674)
+.++.|..-. .-..++|+|..|+|||+|+..+.+..... ++=+ .++++-+.+.. ...++.+++.+
T Consensus 136 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 4556565433 23457899999999999999998754331 1112 45666677643 33455555433
Q ss_pred Hh--hC-----CCCCcccHH-----HHHHHHHHHc---CCCeEEEEEeCC
Q 039885 218 AL--EG-----SATNLVELN-----ALLLRINESI---AREKFLLVLDDV 252 (674)
Q Consensus 218 ~l--~~-----~~~~~~~~~-----~~~~~l~~~l---~~kr~LlVlDdv 252 (674)
.- .. .+.+..... ...-.+.+++ +++..|+++||+
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 21 00 011111111 1222345555 378999999998
No 450
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.85 E-value=0.11 Score=48.12 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..-.|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467899999999999999998764
No 451
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.82 E-value=0.51 Score=45.21 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=54.1
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhC---C-C-------C-----CcccHH
Q 039885 167 ISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEG---S-A-------T-----NLVELN 230 (674)
Q Consensus 167 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~---~-~-------~-----~~~~~~ 230 (674)
+.|+|+.|.|||.+|..+.... . ..++++. .. ..+..++.+.+.. . . . -....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-PT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-SS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-CC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7789999999999998776531 1 2233432 22 1333333333321 1 0 0 012223
Q ss_pred HHHHHHHHHcCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcC
Q 039885 231 ALLLRINESIAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTR 281 (674)
Q Consensus 231 ~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR 281 (674)
.+..... .+..+--+||+|++.......+..+...++ ...++.+|..
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 3333333 333445599999998765556777666554 2345555543
No 452
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.81 E-value=0.089 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=21.2
Q ss_pred CCceEEEEEEecCCChHHHHHHHHhc
Q 039885 161 QNAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 161 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
....++|+|+|-||+||||+|..+..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH
Confidence 34678999999999999999987765
No 453
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.81 E-value=0.088 Score=50.43 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=22.1
Q ss_pred CceEEEEEEecCCChHHHHHHHHhc
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3557999999999999999998876
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.80 E-value=0.084 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..+|.|+|+.|+||||||+.+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 455
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.73 E-value=0.31 Score=45.34 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.|+|=|..|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3778899999999999999874
No 456
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.72 E-value=0.11 Score=50.81 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=21.8
Q ss_pred CceEEEEEEecCCChHHHHHHHHhc
Q 039885 162 NAVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 162 ~~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
....++.++|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3567899999999999999998874
No 457
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.69 E-value=0.083 Score=51.73 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|+|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999965
No 458
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.69 E-value=0.083 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999965
No 459
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.68 E-value=0.084 Score=50.64 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...|.|.|++|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999763
No 460
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.68 E-value=0.088 Score=51.19 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+++|+|+.|+|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 461
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.68 E-value=0.82 Score=52.07 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=44.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCCCC-------------------
Q 039885 165 QTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSATN------------------- 225 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~------------------- 225 (674)
.++.|+|+.|.||||++..+.-.......-...+.+.+....-...+...+...++.....
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~ 189 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEE
Confidence 4789999999999996654432211111112334443333222233444444444321100
Q ss_pred cccHHHHHHHHHH-HcCCCeEEEEEeCCCC
Q 039885 226 LVELNALLLRINE-SIAREKFLLVLDDVWT 254 (674)
Q Consensus 226 ~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~ 254 (674)
..+.+.+...+.. .+-.+--+||||++..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 1223444444333 2334567999999964
No 462
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.67 E-value=0.091 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999964
No 463
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.67 E-value=0.5 Score=50.09 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=55.3
Q ss_pred HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHH-HHHhcCcccccccce-EEEEEeCCCCC-HHHHHHHHHHHhhCC--
Q 039885 148 TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLA-QFVYNDNDVINHFGK-RIWVCVSDPFD-EYRIAKAIIEALEGS-- 222 (674)
Q Consensus 148 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~il~~l~~~-- 222 (674)
+.++.|..-. .-..++|+|..|+|||+|| ..+.+.. .-+. ++++-+.+... +.++.+.+.+.-...
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 4566665332 3346899999999999996 5777742 3453 46777777543 345555554321110
Q ss_pred -----CCCcc-cHHH----HHHHHHHHc--CCCeEEEEEeCC
Q 039885 223 -----ATNLV-ELNA----LLLRINESI--AREKFLLVLDDV 252 (674)
Q Consensus 223 -----~~~~~-~~~~----~~~~l~~~l--~~kr~LlVlDdv 252 (674)
+.+.. .... ..-.+.+++ +++..||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11111 1111 122234444 589999999998
No 464
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.67 E-value=0.071 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999965
No 465
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.66 E-value=0.09 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.++|.|+|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358999999999999999999863
No 466
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.66 E-value=0.64 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998865
No 467
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.65 E-value=0.081 Score=48.50 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 468
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.63 E-value=0.11 Score=54.69 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=57.3
Q ss_pred HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccc--cceEEEEEeCCCC-CHHHHHHHHHHHhhCC--
Q 039885 148 TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINH--FGKRIWVCVSDPF-DEYRIAKAIIEALEGS-- 222 (674)
Q Consensus 148 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~~~~~il~~l~~~-- 222 (674)
+.++.|..-. .-.-++|+|.+|+|||+|+..++++....+. =+.++++-+.+.. ...++.+++...-...
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 4566665433 2345788999999999999999875433111 1356677777654 3445666665431111
Q ss_pred -----CCCcccHH-----HHHHHHHHHcC---CCeEEEEEeCC
Q 039885 223 -----ATNLVELN-----ALLLRINESIA---REKFLLVLDDV 252 (674)
Q Consensus 223 -----~~~~~~~~-----~~~~~l~~~l~---~kr~LlVlDdv 252 (674)
+.+..... ...-.+.++++ ++..|+++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11111111 12223445553 69999999997
No 469
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.62 E-value=0.41 Score=50.67 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=55.1
Q ss_pred HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHH-HHHhcCcccccccce-EEEEEeCCCCC-HHHHHHHHHHHhhCC--
Q 039885 148 TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLA-QFVYNDNDVINHFGK-RIWVCVSDPFD-EYRIAKAIIEALEGS-- 222 (674)
Q Consensus 148 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~il~~l~~~-- 222 (674)
+.++.|..-. .-..++|+|..|+|||+|| ..+.+.. +-+. ++++-+.+... ..++.+.+.+.-...
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 4566665433 3346899999999999996 5777742 3453 46777777543 345555554321111
Q ss_pred -----CCCcccHHH-----HHHHHHHHc--CCCeEEEEEeCC
Q 039885 223 -----ATNLVELNA-----LLLRINESI--AREKFLLVLDDV 252 (674)
Q Consensus 223 -----~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 252 (674)
+.+...... ..-.+.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111111111 112234444 589999999998
No 470
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.60 E-value=0.28 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|.|||||++.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999965
No 471
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.59 E-value=0.37 Score=51.50 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=41.2
Q ss_pred HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCH-HHHHHHH
Q 039885 148 TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDE-YRIAKAI 215 (674)
Q Consensus 148 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i 215 (674)
++++.|..-. .-..++|+|..|+|||+|++.+.+. .+-+.++++-+.+.... .++++++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 5667665432 3456899999999999999998763 23357788888876644 4555544
No 472
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.55 E-value=0.092 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhcC
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-.+++|+|+.|+|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 473
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.52 E-value=0.79 Score=48.48 Aligned_cols=53 Identities=11% Similarity=-0.025 Sum_probs=34.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEAL 219 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 219 (674)
...++.|.|.+|+||||||..++.+.... . ..++|++ -.-+..++...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-~~vl~fS--lEms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHS--LEMGKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-CEEEEEC--SSSCTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-CEEEEEE--CCCCHHHHHHHHHHHH
Confidence 34689999999999999998887643222 1 2455554 4445666666665543
No 474
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.50 E-value=0.093 Score=52.49 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999886
No 475
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.48 E-value=0.11 Score=46.06 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988764
No 476
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.40 E-value=0.11 Score=52.54 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|+|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999888763
No 477
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.38 E-value=0.11 Score=50.80 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=56.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHH--HhhCCCCCcccHHHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSD-PFDEYRIAKAIIE--ALEGSATNLVELNALLLRINES 239 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~--~l~~~~~~~~~~~~~~~~l~~~ 239 (674)
.-.+++|+|+.|+|||||++.+..-. ...+...+++.-.. .+-.... ..++. .++. +. ..+...+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~--~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI--NQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH--HHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC--CCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHH
Confidence 34689999999999999999887631 11112333322110 0000000 00000 0000 01 1234456666
Q ss_pred cCCCeEEEEEeCCCCCChhhHHHHHHhhcCCCCCcEEEEEcCChhHH
Q 039885 240 IAREKFLLVLDDVWTEDYNKWESFRRCLINGQRGSKILVTTRKETVA 286 (674)
Q Consensus 240 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va 286 (674)
+..+.-+|++|+.. +.+....+.... ..|.-|++||....+.
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 65566688999996 334443333332 2466788888765543
No 478
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.36 E-value=0.47 Score=50.32 Aligned_cols=55 Identities=7% Similarity=0.001 Sum_probs=36.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALE 220 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 220 (674)
...++.|.|.+|+||||||..++........ ..++|++.- .+..++...++....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHHHHc
Confidence 3458999999999999999888764222111 245666554 467777777765543
No 479
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.31 E-value=0.12 Score=51.54 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999986
No 480
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.31 E-value=0.095 Score=51.24 Aligned_cols=22 Identities=45% Similarity=0.777 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039885 165 QTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.+++|+|+.|+|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999965
No 481
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.30 E-value=0.47 Score=49.36 Aligned_cols=102 Identities=17% Similarity=0.282 Sum_probs=71.9
Q ss_pred cccCCCCceEEEecCCCcccccchhHhhccCCceeEEEecccccccccccccccc-ccccCCCCCcceeecCCCCccccc
Q 039885 490 SLLNAKKLRSFLISSPYDVFSSVLPRLFDQLTCLRTLKIVAHDRRWSRGMIREIP-KEIEKLIHLRFLQLRDLMIDELPE 568 (674)
Q Consensus 490 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lP~ 568 (674)
.+.++.+|+++.+..+. ...-...|.++..|+.+.+ . +.+..++ ..|.++.+|+.+.|..+ ++.++.
T Consensus 260 aF~~c~~L~~i~lp~~~---~~I~~~aF~~c~~L~~i~l-------~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV---VSIGTGAFMNCPALQDIEF-------S-SRITELPESVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp TTTTCSSCCEEECCTTC---CEECTTTTTTCTTCCEEEC-------C-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred eeeecccccEEeccccc---ceecCcccccccccccccC-------C-CcccccCceeecCCCCcCEEEeCCc-ccEehH
Confidence 45677888888776553 2233455778888888888 4 3455655 45677888888888654 677755
Q ss_pred -cccCCCcccEEEecccccccccccc-ccccCccCCeeee
Q 039885 569 -TCCELFNLQTLEIRQRGYYLRRLPH-GFGRLVNLRHLSE 606 (674)
Q Consensus 569 -~i~~L~~L~~L~l~~~~~~~~~lP~-~i~~L~~L~~L~l 606 (674)
.+.++.+|+.+.+..+ +..++. .|.++++|+.+.+
T Consensus 328 ~aF~~C~~L~~i~ip~s---v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS---VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTTTTCTTCCEEEECTT---CCBCCGGGGTTCTTCCEEEE
T ss_pred hHhhCCCCCCEEEECcc---cCEEhHhHhhCCCCCCEEEE
Confidence 4677888888888654 666755 4888888888887
No 482
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.29 E-value=0.097 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999999763
No 483
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.27 E-value=0.21 Score=61.87 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=54.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhCCC-----CCcccHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIEALEGSA-----TNLVELNALLLRIN 237 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 237 (674)
..+++.|+|++|+|||+||.++..... .+=..++|+++...++... ++.++.+. .+....+++...++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 457899999999999999988876422 2212567888887776665 44444221 11223345555555
Q ss_pred HHcC-CCeEEEEEeCCC
Q 039885 238 ESIA-REKFLLVLDDVW 253 (674)
Q Consensus 238 ~~l~-~kr~LlVlDdv~ 253 (674)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 466799999983
No 484
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.22 E-value=0.51 Score=50.09 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=56.1
Q ss_pred HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHH-HHHhcCccc----ccccc-eEEEEEeCCCCC-HHHHHHHHHHHhh
Q 039885 148 TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLA-QFVYNDNDV----INHFG-KRIWVCVSDPFD-EYRIAKAIIEALE 220 (674)
Q Consensus 148 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~~~~~il~~l~ 220 (674)
+.++.|..-. .-..++|+|..|+|||+|| ..+.+.... .++-+ .++++-+.+... ..++.+.+...-.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 4566665433 3346889999999999995 566664321 12244 467777887543 3455555543211
Q ss_pred CC-------CCCcc-cHHH----HHHHHHHHc--CCCeEEEEEeCC
Q 039885 221 GS-------ATNLV-ELNA----LLLRINESI--AREKFLLVLDDV 252 (674)
Q Consensus 221 ~~-------~~~~~-~~~~----~~~~l~~~l--~~kr~LlVlDdv 252 (674)
.. +.+.. .... ..-.+.+++ +++..||++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 00 11111 1111 122234444 589999999998
No 485
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.14 E-value=0.1 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999965
No 486
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.12 E-value=0.1 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039885 165 QTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 165 ~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.+++|+|+.|+|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999999763
No 487
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.12 E-value=0.1 Score=52.09 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 446899999999999999999876
No 488
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.10 E-value=0.35 Score=53.28 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 039885 164 VQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 164 ~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
-.+++|+|+.|.|||||++.+..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 45899999999999999998865
No 489
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.05 E-value=0.11 Score=45.97 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039885 166 TISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 490
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.03 E-value=0.13 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
....|+|+|..|+|||||.+.+...
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 491
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.95 E-value=0.12 Score=50.79 Aligned_cols=21 Identities=38% Similarity=0.759 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039885 166 TISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 166 vi~I~G~gGiGKTtLA~~v~~ 186 (674)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 492
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.93 E-value=0.16 Score=45.79 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 493
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.86 E-value=0.13 Score=49.17 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
...+|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 494
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.84 E-value=0.14 Score=54.07 Aligned_cols=43 Identities=30% Similarity=0.253 Sum_probs=28.5
Q ss_pred hHHHHHHHhcCCCCC---CCCceEEEEEEecCCChHHHHHHHHhcC
Q 039885 145 EKSTLKSKLLGEGSE---QQNAVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 145 ~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
..++|.+++...... ......+|.|+|.+|+||||+|..+...
T Consensus 77 ~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 77 VYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345555655432110 0134578999999999999999888763
No 495
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.82 E-value=0.15 Score=46.64 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999999999999874
No 496
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.79 E-value=0.12 Score=56.38 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
.-.+++|+|..|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4468999999999999999988763
No 497
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.77 E-value=0.056 Score=53.85 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=18.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhc
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYN 186 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~ 186 (674)
...+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 498
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.74 E-value=0.15 Score=54.67 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=39.9
Q ss_pred HHHHHhcCCCCCCCCceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHH
Q 039885 148 TLKSKLLGEGSEQQNAVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPF-DEYRIAKA 214 (674)
Q Consensus 148 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~ 214 (674)
++++.|..-. .-..++|.|..|+|||+|++.+.+. .+-+.++++-+.+.. ...+++++
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 5667776433 3457899999999999999999874 233567788887653 33344443
No 499
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.71 E-value=1.6 Score=46.25 Aligned_cols=52 Identities=10% Similarity=0.124 Sum_probs=34.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYNDNDVINHFGKRIWVCVSDPFDEYRIAKAIIE 217 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 217 (674)
...++.|.|.+|+||||||..++........ ..++|++.. .+...+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESS--SCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHHH
Confidence 3458999999999999999888764322111 245666544 456666666654
No 500
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.68 E-value=0.16 Score=46.71 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhcC
Q 039885 163 AVQTISLVGMGGIGKTTLAQFVYND 187 (674)
Q Consensus 163 ~~~vi~I~G~gGiGKTtLA~~v~~~ 187 (674)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
Done!