BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039886
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 74/105 (70%), Gaps = 6/105 (5%)
Query: 9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
EKE+YFF+PRDRKY NG+RPNR AG GYWKATG DK I G VG KK LVFY GK PK
Sbjct: 70 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 129
Query: 69 GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERS 113
G KT WIMHEYR+ S R + +LDDWVLCRIY K+ S
Sbjct: 130 GTKTNWIMHEYRLIEPS------RRNGSTKLDDWVLCRIYKKQSS 168
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 74/105 (70%), Gaps = 6/105 (5%)
Query: 9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
EKE+YFF+PRDRKY NG+RPNR AG GYWKATG DK I G VG KK LVFY GK PK
Sbjct: 73 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 132
Query: 69 GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERS 113
G KT WIMHEYR+ S R + +LDDWVLCRIY K+ S
Sbjct: 133 GTKTNWIMHEYRLIEPS------RRNGSTKLDDWVLCRIYKKQSS 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 10 KEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKG 69
+E+YFFTPRDRKY NG+RPNRAAG GYWKATGADK + G +G KK LVFY GK P+G
Sbjct: 69 REWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG 128
Query: 70 DKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKE 111
KT WIMHEYR+ + + +RLDDWVLCR+Y K+
Sbjct: 129 VKTDWIMHEYRLADAG-RAAAGAKKGSLRLDDWVLCRLYNKK 169
>pdb|3A56|A Chain A, Crystal Structure Of Pro- Protein-Glutaminase
pdb|3A56|B Chain B, Crystal Structure Of Pro- Protein-Glutaminase
Length = 305
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 47 KHNGAV-VGFKKTLVFYEGKPPKGDKTFWIMHEYRVNNDSP 86
+ NG + V F T FYE KP K ++ + M V N+SP
Sbjct: 34 EENGMIKVSFMLTAQFYEIKPTKENEQYIGMLRQAVKNESP 74
>pdb|3A54|A Chain A, Crystal Structure Of The A47q1 Mutant Of
Pro-Protein-Glutaminase
pdb|3A54|B Chain B, Crystal Structure Of The A47q1 Mutant Of
Pro-Protein-Glutaminase
pdb|3A55|A Chain A, Crystal Structure Of The A47q2 Mutant Of Pro-
Protein-Glutaminase
pdb|3A55|B Chain B, Crystal Structure Of The A47q2 Mutant Of Pro-
Protein-Glutaminase
Length = 305
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 47 KHNGAV-VGFKKTLVFYEGKPPKGDKTFWIMHEYRVNNDSP 86
+ NG + V F T FYE KP K ++ + M V N+SP
Sbjct: 34 EENGMIKVSFMLTQQFYEIKPTKENEQYIGMLRQAVKNESP 74
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
Query: 35 GYWKATGADKSIKHNGAVVG-FKKTLVFYEGKPPKGDKTFWIMHEYRVNNDSPPSTRTRL 93
Y+K G G V+ + K +Y+G P + +FW E+ +NN ST
Sbjct: 392 AYYKQKGHTDDFYMIGEVLSEYDKVAPYYKGLPALFEFSFWYRLEWGINN----STGCYF 447
Query: 94 STDMRLDDWVLCRIYYKERSD--KSLKSLHRTEDRASTEETNEPD-CDKGSAVDFSGYAD 150
+ D+ + Y RSD ++ K + EDR S++ D C +AV +
Sbjct: 448 AKDIL----SYQQKYANYRSDYIEATKLSNHNEDRTSSKLGKSADKCKLAAAVLLTSAGH 503
Query: 151 TYSGYMQHL 159
Y Y + L
Sbjct: 504 PYIYYGEEL 512
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
Query: 35 GYWKATGADKSIKHNGAVVG-FKKTLVFYEGKPPKGDKTFWIMHEYRVNNDSPPSTRTRL 93
Y+K G G V+ + K +Y+G P + +FW E+ +NN ST
Sbjct: 392 AYYKQKGHTDDFYXIGEVLSEYDKVAPYYKGLPALFEFSFWYRLEWGINN----STGCYF 447
Query: 94 STDMRLDDWVLCRIYYKERSD--KSLKSLHRTEDRASTEETNEPD-CDKGSAVDFSGYAD 150
+ D+ + Y RSD ++ K + EDR S++ D C +AV +
Sbjct: 448 AKDIL----SYQQKYANYRSDYIEATKLSNHDEDRTSSKLGKSADKCKLAAAVLLTSAGH 503
Query: 151 TYSGYMQHL 159
Y Y + L
Sbjct: 504 PYIYYGEEL 512
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,491,512
Number of Sequences: 62578
Number of extensions: 275836
Number of successful extensions: 470
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 7
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)