Query 039886
Match_columns 192
No_of_seqs 187 out of 875
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.2E-39 4E-44 264.1 11.8 108 5-113 64-171 (174)
2 1ut7_A No apical meristem prot 100.0 4.8E-39 1.6E-43 260.0 12.1 103 6-114 67-169 (171)
3 2oh5_A Polyhedrin, C-polyhedri 16.9 97 0.0033 24.5 3.1 26 34-59 140-166 (248)
4 1m5a_B Insulin B chain; alpha 7.8 95 0.0033 17.4 0.2 10 9-18 20-29 (30)
5 1na6_A Ecorii, restriction end 7.0 5.4E+02 0.019 22.7 4.8 22 56-82 79-100 (404)
6 2zvv_Y Cyclin-dependent kinase 6.3 2.3E+02 0.0079 15.1 1.2 8 56-63 16-23 (26)
7 2y9w_C Lectin-like fold protei 5.7 6.1E+02 0.021 18.3 3.7 44 29-79 14-58 (150)
8 1rf3_B 24-residue peptide from 5.4 3.1E+02 0.011 14.6 1.4 12 180-191 12-23 (26)
9 1ri9_A FYN-binding protein; SH 5.3 2.9E+02 0.0098 19.7 1.7 9 99-107 73-81 (102)
10 2h7a_A Hypothetical protein YC 4.5 3.1E+02 0.011 19.8 1.4 14 103-116 14-27 (110)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.2e-39 Score=264.15 Aligned_cols=108 Identities=57% Similarity=1.078 Sum_probs=85.9
Q ss_pred cccCCCeEEEeeeccCCCCCCCCCeeecCCcEEEecccceeeecCCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCC
Q 039886 5 CAEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVNND 84 (192)
Q Consensus 5 ~~~ge~eWYFFs~r~~k~~~G~R~~R~t~~G~WkatG~~k~I~~~g~~vG~KktLvFy~gr~p~g~kT~WvMhEYrl~~~ 84 (192)
+..|+++|||||++++||++|.|+||+|++||||+||++++|..+|.+||+||+||||.|++|+|.||+|+||||+|...
T Consensus 64 ~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~ 143 (174)
T 3ulx_A 64 ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADA 143 (174)
T ss_dssp CSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSC
T ss_pred hccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCC
Confidence 45688999999999999999999999999999999999999998899999999999999999999999999999999987
Q ss_pred CCCCccccCCCCCcCCcEEEEEEEEeCCC
Q 039886 85 SPPSTRTRLSTDMRLDDWVLCRIYYKERS 113 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~VLCrIf~k~~~ 113 (192)
...... ...+++..++|||||||+|++.
T Consensus 144 ~~~~~~-~~~~~~~~~~wVlCrvf~K~~~ 171 (174)
T 3ulx_A 144 GRAAAG-AKKGSLRLDDWVLCRLYNKKNE 171 (174)
T ss_dssp C------------CCSSEEEEEEEESCC-
T ss_pred CCcccc-cccCCCCCCCEEEEEEEEcCCC
Confidence 543211 1122346799999999999764
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=4.8e-39 Score=259.99 Aligned_cols=103 Identities=64% Similarity=1.118 Sum_probs=81.5
Q ss_pred ccCCCeEEEeeeccCCCCCCCCCeeecCCcEEEecccceeeecCCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCC
Q 039886 6 AEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVNNDS 85 (192)
Q Consensus 6 ~~ge~eWYFFs~r~~k~~~G~R~~R~t~~G~WkatG~~k~I~~~g~~vG~KktLvFy~gr~p~g~kT~WvMhEYrl~~~~ 85 (192)
..|+++|||||++++||++|.|+||+|++||||+||++++|..++.+||+||+||||.|++|+|.||+|+||||+|....
T Consensus 67 ~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~ 146 (171)
T 1ut7_A 67 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPS 146 (171)
T ss_dssp SSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC
T ss_pred hcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCc
Confidence 46899999999999999999999999999999999999999988899999999999999999999999999999999875
Q ss_pred CCCccccCCCCCcCCcEEEEEEEEeCCCc
Q 039886 86 PPSTRTRLSTDMRLDDWVLCRIYYKERSD 114 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~VLCrIf~k~~~~ 114 (192)
.. .+....++|||||||+|+...
T Consensus 147 ~~------~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 147 RR------NGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp --------------CCEEEEEEEECC---
T ss_pred cc------cCcccCCCEEEEEEEEcCCCC
Confidence 21 122357899999999998653
No 3
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=16.93 E-value=97 Score=24.46 Aligned_cols=26 Identities=35% Similarity=0.741 Sum_probs=20.0
Q ss_pred CcEEEecc-cceeeecCCeEEEEEEEE
Q 039886 34 EGYWKATG-ADKSIKHNGAVVGFKKTL 59 (192)
Q Consensus 34 ~G~WkatG-~~k~I~~~g~~vG~KktL 59 (192)
+--|.+|| +-+.|..+|++||.-..|
T Consensus 140 shpweatgikyrki~~dgeivgyshyf 166 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYF 166 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEE
T ss_pred cCCccccCceEEEeeecceEeeeeeee
Confidence 44699999 456777999999986554
No 4
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=7.84 E-value=95 Score=17.44 Aligned_cols=10 Identities=30% Similarity=0.853 Sum_probs=7.5
Q ss_pred CCeEEEeeec
Q 039886 9 EKEFYFFTPR 18 (192)
Q Consensus 9 e~eWYFFs~r 18 (192)
+...|||+|+
T Consensus 20 gdRGF~~~p~ 29 (30)
T 1m5a_B 20 GERGFFYTPK 29 (30)
T ss_dssp GGGCEEECCC
T ss_pred ccCccccCCC
Confidence 4567899885
No 5
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=6.99 E-value=5.4e+02 Score=22.71 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=18.3
Q ss_pred EEEEEeeeCCCCCCCccCeEEEEEEeC
Q 039886 56 KKTLVFYEGKPPKGDKTFWIMHEYRVN 82 (192)
Q Consensus 56 KktLvFy~gr~p~g~kT~WvMhEYrl~ 82 (192)
.-.++||..|-.++.++ ||||.
T Consensus 79 d~~~twYn~R~~~~tRn-----EyRLt 100 (404)
T 1na6_A 79 EARAIYYNSAHFGKTRN-----EKRIT 100 (404)
T ss_dssp EEEEEEECGGGTTSCCC-----EEEEE
T ss_pred EEEEEEecccccCCCCC-----ceEEe
Confidence 66899998887777777 99998
No 6
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=6.27 E-value=2.3e+02 Score=15.11 Aligned_cols=8 Identities=38% Similarity=0.766 Sum_probs=3.6
Q ss_pred EEEEEeee
Q 039886 56 KKTLVFYE 63 (192)
Q Consensus 56 KktLvFy~ 63 (192)
|+.|+|+.
T Consensus 16 KRRlvf~~ 23 (26)
T 2zvv_Y 16 KRRLIFSX 23 (26)
T ss_pred hceEEEEe
Confidence 34445543
No 7
>2y9w_C Lectin-like fold protein, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_E
Probab=5.68 E-value=6.1e+02 Score=18.31 Aligned_cols=44 Identities=25% Similarity=0.684 Sum_probs=23.6
Q ss_pred eeecCCcEEEecccceeee-cCCeEEEEEEEEEeeeCCCCCCCccCeEEEEE
Q 039886 29 NRAAGEGYWKATGADKSIK-HNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEY 79 (192)
Q Consensus 29 ~R~t~~G~WkatG~~k~I~-~~g~~vG~KktLvFy~gr~p~g~kT~WvMhEY 79 (192)
-|.-.+.-|-......... ..| +|..+.-..|......|++|.|
T Consensus 14 trilnganwannsatenlatnsg-------tliifdqstpgqdadrwlihny 58 (150)
T 2y9w_C 14 TRILNGANWANNSATENLATNSG-------TLIIFDQSTPGQDADRWLIHNY 58 (150)
T ss_dssp BEEEETTEEEEECCC------CC-------EEEEEESCCCSTTTTCEEEEEE
T ss_pred ceeeccccccccchhhhhhcCCc-------eEEEEcCCCCCCcchhhhhhhc
Confidence 3444566676554433332 333 4444444556666789999987
No 8
>1rf3_B 24-residue peptide from lymphotoxin-B receptor; CD40, NF-KB signaling, LTBR, TNF receptor, TRAF3 crystallography, signaling protein; 3.50A {Homo sapiens} SCOP: j.116.1.1
Probab=5.41 E-value=3.1e+02 Score=14.59 Aligned_cols=12 Identities=42% Similarity=0.620 Sum_probs=7.1
Q ss_pred cccCCCCCCCCC
Q 039886 180 IVNLDEPFQHDG 191 (192)
Q Consensus 180 ~~~~~~~~~~~~ 191 (192)
...|-+++|.||
T Consensus 12 p~~ls~p~qedg 23 (26)
T 1rf3_B 12 PPGLSTPHQEDG 23 (26)
T ss_dssp CCCSSCCCCCCC
T ss_pred CcccCCcchhcc
Confidence 345556666665
No 9
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=5.28 E-value=2.9e+02 Score=19.71 Aligned_cols=9 Identities=56% Similarity=0.667 Sum_probs=7.1
Q ss_pred CCcEEEEEE
Q 039886 99 LDDWVLCRI 107 (192)
Q Consensus 99 ~~~~VLCrI 107 (192)
.++|+|||=
T Consensus 73 e~~wwLcRN 81 (102)
T 1ri9_A 73 DDTKVLCRN 81 (102)
T ss_dssp SSSEEEEEE
T ss_pred CCCEEEEEC
Confidence 469999983
No 10
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=4.51 E-value=3.1e+02 Score=19.83 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=11.3
Q ss_pred EEEEEEEeCCCccc
Q 039886 103 VLCRIYYKERSDKS 116 (192)
Q Consensus 103 VLCrIf~k~~~~~~ 116 (192)
.||-||++++....
T Consensus 14 mlC~IYkS~KK~~~ 27 (110)
T 2h7a_A 14 MFCVIYRSSKRDQT 27 (110)
T ss_dssp CCEEEEEETTSSSC
T ss_pred EEEEEEecCCCCce
Confidence 79999999877544
Done!