Query 039892
Match_columns 343
No_of_seqs 177 out of 1480
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 4E-105 8E-110 768.8 23.5 315 5-326 2-323 (324)
2 cd00693 secretory_peroxidase H 100.0 3.3E-98 7E-103 718.3 23.7 297 25-325 1-297 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.3E-72 2.7E-77 524.3 7.1 229 42-291 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 2.1E-69 4.5E-74 514.2 18.8 230 40-322 15-255 (289)
5 cd00691 ascorbate_peroxidase A 100.0 2.7E-67 5.9E-72 494.1 17.4 229 37-312 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 8.5E-66 1.8E-70 482.5 18.1 231 28-312 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 2.7E-63 5.8E-68 480.0 19.1 237 38-326 16-288 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 3.2E-63 6.8E-68 464.6 18.6 219 41-312 19-248 (251)
9 cd00314 plant_peroxidase_like 100.0 1.9E-59 4E-64 441.5 15.7 223 41-308 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 3.8E-56 8.2E-61 436.9 17.3 271 25-313 28-397 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 5E-53 1.1E-57 438.3 18.2 271 25-313 38-404 (716)
12 PRK15061 catalase/hydroperoxid 100.0 9.5E-50 2.1E-54 411.8 18.3 271 25-313 40-410 (726)
13 cd08201 plant_peroxidase_like_ 100.0 1.2E-49 2.7E-54 372.9 12.5 219 42-308 27-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 2E-38 4.4E-43 300.7 15.5 220 44-310 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 3E-33 6.5E-38 291.0 15.0 221 41-311 429-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 7.5E-33 1.6E-37 286.7 16.4 221 44-311 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 3.7E-28 8.1E-33 241.9 14.9 238 55-310 93-416 (730)
18 COG0376 KatG Catalase (peroxid 99.3 1E-11 2.2E-16 125.1 12.7 215 45-310 453-725 (730)
19 PF11895 DUF3415: Domain of un 53.8 13 0.00029 29.3 2.7 30 294-325 2-31 (80)
20 COG3763 Uncharacterized protei 40.6 73 0.0016 24.6 4.9 29 41-69 24-52 (71)
21 PRK01844 hypothetical protein; 34.3 85 0.0018 24.4 4.4 29 41-69 24-52 (72)
22 PRK00523 hypothetical protein; 29.5 1.1E+02 0.0024 23.7 4.3 29 41-69 25-53 (72)
23 COG0167 PyrD Dihydroorotate de 24.0 1.2E+02 0.0027 29.8 4.7 95 71-188 185-304 (310)
24 KOG0400 40S ribosomal protein 23.6 59 0.0013 28.2 2.1 33 168-200 31-64 (151)
25 PRK05264 transcriptional repre 21.9 51 0.0011 26.7 1.3 48 274-325 35-85 (105)
26 cd00490 Met_repressor_MetJ Met 21.5 53 0.0012 26.5 1.3 53 274-331 34-89 (103)
27 PLN00017 photosystem I reactio 21.0 53 0.0011 26.3 1.2 21 288-308 38-58 (90)
28 PTZ00411 transaldolase-like pr 20.8 61 0.0013 32.3 1.9 49 136-184 179-230 (333)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=3.7e-105 Score=768.81 Aligned_cols=315 Identities=33% Similarity=0.554 Sum_probs=289.2
Q ss_pred hhHHHHHHHHHHHh--hhhcccCCCccccccCCccHHHHHHHHHHHHHhcCCChhhhhHHHhhhccccCCCCcceeecCC
Q 039892 5 QQALCILIFSFSFL--ANLTESRLSIDYYSKSCPRFSQIMQDTITNKQITSPTTAAATLRLFFHDCLLNGCDSSILITST 82 (343)
Q Consensus 5 ~~~~~~~~~~~~~~--~~~~~~~l~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~a~~lLRL~FHDcfv~GCDgSiLL~~~ 82 (343)
|+++.+++++++.. ..++.++|+++||++|||++|+||+++|++++.+||+++|++|||+||||||+||||||||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~ 81 (324)
T PLN03030 2 QRFIVILFFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS 81 (324)
T ss_pred ceehhHHHHHHHHHhcccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC
Confidence 55666665554432 2234577999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCccccCcccCCCCCCchhhHHHHHHHHHHhhCCCCccHHHHHHHhhHhHHHhhCCCcccccCCccCCCCcccccccCC
Q 039892 83 PFNKAERDADINLSLPGDAFDVITRAKTALELQCPNTVSCSDILAVATRDLVTMVGGPYYNVYLGRKDVRVSKAADVEGN 162 (343)
Q Consensus 83 ~~~~~E~~~~~N~~l~g~~~~vId~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~a~~~ 162 (343)
. +||++++|.+|+| ||+||.||++||++||++||||||||+||||||+++|||.|+|++||||+++|...++. +
T Consensus 82 ~---~Ek~a~~N~~l~G--f~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~ 155 (324)
T PLN03030 82 N---TEKTALPNLLLRG--YDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-N 155 (324)
T ss_pred c---ccccCCCCcCcch--HHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-C
Confidence 3 6999999999999 99999999999999999999999999999999999999999999999999999877774 8
Q ss_pred CCCCCCCHHHHHHHHHHCCCCcccceeeecccccccccccccccccccCCCCC-CCCCCCCHHHHHHHHHhCCCCCCCCC
Q 039892 163 LPKPTMPMSQIIDVFAKRKFSVQEMVALSGAHTIGFSHCNEFSGNIYNYSRIP-YYDAHYNPRFAEALQKACADYQKNPT 241 (343)
Q Consensus 163 LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~ahc~~f~~Rl~~f~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~ 241 (343)
||+|+.++++|++.|+++||+.+|||+||||||||++||.+|.+|||||++++ .+||+||+.|+++|++.||. .++++
T Consensus 156 LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~-~~~~~ 234 (324)
T PLN03030 156 LPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQ-NGDGS 234 (324)
T ss_pred CcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCC-CCCCC
Confidence 99999999999999999999999999999999999999999999999999875 58999999999999999995 33333
Q ss_pred CcccCCCCCCCCcchhhhhcccCCccccccccccCCCCCCHHHHHHHhhCH----HHHHHHHHHHHHHHHhCCCCCCchh
Q 039892 242 LSVFNDIMSPNKFDNLYYQNLPKGLGLLESDHGLFNDPRTKPYVELYARDQ----NEFFKALLELWRSLVFMVLRPEEEE 317 (343)
Q Consensus 242 ~~~~lD~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~igv~tg~~~ 317 (343)
..+++|+.||.+|||+||+||+.++|+|+|||+|++|++|+++|++||.|+ +.|+++|++||+|||+|+|+||.+|
T Consensus 235 ~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~G 314 (324)
T PLN03030 235 RRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNG 314 (324)
T ss_pred ccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCC
Confidence 468899999999999999999999999999999999999999999999875 5999999999999999999999888
Q ss_pred hcccceecc
Q 039892 318 RLGAGVMLL 326 (343)
Q Consensus 318 r~~~~~~~~ 326 (343)
+++++|+.+
T Consensus 315 EIRk~C~~v 323 (324)
T PLN03030 315 EIRKVCSAI 323 (324)
T ss_pred ceecccccc
Confidence 888887764
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.3e-98 Score=718.32 Aligned_cols=297 Identities=45% Similarity=0.753 Sum_probs=283.9
Q ss_pred CCCccccccCCccHHHHHHHHHHHHHhcCCChhhhhHHHhhhccccCCCCcceeecCCCCCccccCcccCCCCCCchhhH
Q 039892 25 RLSIDYYSKSCPRFSQIMQDTITNKQITSPTTAAATLRLFFHDCLLNGCDSSILITSTPFNKAERDADINLSLPGDAFDV 104 (343)
Q Consensus 25 ~l~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~a~~lLRL~FHDcfv~GCDgSiLL~~~~~~~~E~~~~~N~~l~g~~~~v 104 (343)
||+++||++|||++|+||+++|++.+.+|++++|++|||+||||||+||||||||+++.+..+|+++++|.++++ |++
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g--~~~ 78 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRG--FDV 78 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcch--hHH
Confidence 699999999999999999999999999999999999999999999999999999998766678999999999998 999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHhhHhHHHhhCCCcccccCCccCCCCcccccccCCCCCCCCCHHHHHHHHHHCCCCc
Q 039892 105 ITRAKTALELQCPNTVSCSDILAVATRDLVTMVGGPYYNVYLGRKDVRVSKAADVEGNLPKPTMPMSQIIDVFAKRKFSV 184 (343)
Q Consensus 105 Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~ 184 (343)
|+.||++||+.||++||||||||||||+||+++|||.|+|++||+|+++|...++ ++||.|+.+++++++.|+++||++
T Consensus 79 i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~ 157 (298)
T cd00693 79 IDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTV 157 (298)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCH
Confidence 9999999999999999999999999999999999999999999999998877666 789999999999999999999999
Q ss_pred ccceeeecccccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCCCCCcchhhhhcccC
Q 039892 185 QEMVALSGAHTIGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMSPNKFDNLYYQNLPK 264 (343)
Q Consensus 185 ~dlVaLsGaHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~ 264 (343)
+|||+|+||||||++||.+|.+|||||+|++.+||+||+.|+..|++.||+ .++++..+++|+.||.+|||+||+||+.
T Consensus 158 ~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~-~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~ 236 (298)
T cd00693 158 TDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPA-GGDDDTLVPLDPGTPNTFDNSYYKNLLA 236 (298)
T ss_pred HHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCC-CCCCCccccCCCCCCCccccHHHHHHHh
Confidence 999999999999999999999999999999899999999999999999997 4445567899999999999999999999
Q ss_pred CccccccccccCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCchhhcccceec
Q 039892 265 GLGLLESDHGLFNDPRTKPYVELYARDQNEFFKALLELWRSLVFMVLRPEEEERLGAGVML 325 (343)
Q Consensus 265 ~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~tg~~~r~~~~~~~ 325 (343)
++|+|+|||+|+.|++|+++|++||.||+.|+++|++||+||++|+|+||.+|+++++|..
T Consensus 237 ~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~ 297 (298)
T cd00693 237 GRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRV 297 (298)
T ss_pred cccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCcccc
Confidence 9999999999999999999999999999999999999999999999999977777777653
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.3e-72 Score=524.28 Aligned_cols=229 Identities=47% Similarity=0.795 Sum_probs=209.9
Q ss_pred HHHHHHHHHhcCCChhhhhHHHhhhcccc-CCCCcceeecCCCCCccccCcccCCCCCCchhhHHHHHHHHHHhhCCCCc
Q 039892 42 MQDTITNKQITSPTTAAATLRLFFHDCLL-NGCDSSILITSTPFNKAERDADINLSLPGDAFDVITRAKTALELQCPNTV 120 (343)
Q Consensus 42 V~~~v~~~~~~d~~~a~~lLRL~FHDcfv-~GCDgSiLL~~~~~~~~E~~~~~N~~l~g~~~~vId~iK~~le~~cp~~V 120 (343)
||+.|++++..+++++|++|||+|||||+ +|||||||+. .+|+++++|.+|+. ++++|+.||+++|++||++|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~-~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRD-GFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHH-HHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcce-eeechhhHHhhhcccccCCC
Confidence 79999999999999999999999999999 9999999983 37999999999992 49999999999999999999
Q ss_pred cHHHHHHHhhHhHHHhhCCCcccccCCccCCCCcccccccCCCCCCCCCHHHHHHHHHHCCCCcccceeeeccccccccc
Q 039892 121 SCSDILAVATRDLVTMVGGPYYNVYLGRKDVRVSKAADVEGNLPKPTMPMSQIIDVFAKRKFSVQEMVALSGAHTIGFSH 200 (343)
Q Consensus 121 ScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~ah 200 (343)
||||||++|||+||+.+|||.|+|++||+|+.+++..++ .+||.|+.++++|++.|+++|||++|||||+||||||++|
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~ 153 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAH 153 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEES
T ss_pred CHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccce
Confidence 999999999999999999999999999999999998777 7899999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCCCCCcchhhhhcccCCccccccccccCCCCC
Q 039892 201 CNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMSPNKFDNLYYQNLPKGLGLLESDHGLFNDPR 280 (343)
Q Consensus 201 c~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~ 280 (343)
|.+|. ||| + .+||+||+.|+.. .|+ .++++ .+++| ||.+|||+||++++.++|+|+|||+|++|++
T Consensus 154 c~~f~-rl~-~----~~dp~~d~~~~~~---~C~--~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~ 219 (230)
T PF00141_consen 154 CSSFS-RLY-F----PPDPTMDPGYAGQ---NCN--SGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPE 219 (230)
T ss_dssp GGCTG-GTS-C----SSGTTSTHHHHHH---SSS--TSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTT
T ss_pred ecccc-ccc-c----cccccccccccee---ccC--CCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHH
Confidence 99999 999 4 6799999999988 994 33333 77888 9999999999999999999999999999999
Q ss_pred CHHHHHHHhhC
Q 039892 281 TKPYVELYARD 291 (343)
Q Consensus 281 t~~~V~~yA~d 291 (343)
|+++|++||+|
T Consensus 220 t~~~V~~yA~d 230 (230)
T PF00141_consen 220 TRPIVERYAQD 230 (230)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
Confidence 99999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=2.1e-69 Score=514.22 Aligned_cols=230 Identities=32% Similarity=0.468 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHhcCCChhhhhHHHhhhccc-------cCCCCcceeecCCCCCccccCcccCCCCCCchhhHHHHHHHHH
Q 039892 40 QIMQDTITNKQITSPTTAAATLRLFFHDCL-------LNGCDSSILITSTPFNKAERDADINLSLPGDAFDVITRAKTAL 112 (343)
Q Consensus 40 ~iV~~~v~~~~~~d~~~a~~lLRL~FHDcf-------v~GCDgSiLL~~~~~~~~E~~~~~N~~l~g~~~~vId~iK~~l 112 (343)
+-+++.+ ..+.+||.++|.+|||+||||| ++||||||++. +|+++++|.+|+. ++++|++||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~-g~~vid~iK~~~ 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKI-AIDLCEPVKAKH 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHH-HHHHHHHHHHHc
Confidence 3455555 4577899999999999999999 99999999984 6999999999952 399999999987
Q ss_pred HhhCCCCccHHHHHHHhhHhHHHhhCCCcccccCCccCCCCcccccccCCCCCCCCCHHHHHHHHHHCCCCcccceeeec
Q 039892 113 ELQCPNTVSCSDILAVATRDLVTMVGGPYYNVYLGRKDVRVSKAADVEGNLPKPTMPMSQIIDVFAKRKFSVQEMVALSG 192 (343)
Q Consensus 113 e~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG 192 (343)
++|||||||+||||+||+++|||.|+|++||+|+++++ ++++||+|+.+++++++.|+++|||++|||+|+|
T Consensus 87 -----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsG 158 (289)
T PLN02608 87 -----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSG 158 (289)
T ss_pred -----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcc
Confidence 48999999999999999999999999999999999885 4468999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCCCCCcchhhhhcccCC--ccc--
Q 039892 193 AHTIGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMSPNKFDNLYYQNLPKG--LGL-- 268 (343)
Q Consensus 193 aHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~--~gl-- 268 (343)
|||||++||. |+ +|.| |+ ..||.+|||+||++++.+ +|+
T Consensus 159 AHTiG~ahc~----r~-g~~g--------------------~~------------~~Tp~~FDN~Yy~~ll~~~~~gll~ 201 (289)
T PLN02608 159 GHTLGRAHPE----RS-GFDG--------------------PW------------TKEPLKFDNSYFVELLKGESEGLLK 201 (289)
T ss_pred cccccccccc----CC-CCCC--------------------CC------------CCCCCccChHHHHHHHcCCcCCccc
Confidence 9999999995 54 3322 11 258999999999999999 798
Q ss_pred cccccccCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCchhhcccc
Q 039892 269 LESDHGLFNDPRTKPYVELYARDQNEFFKALLELWRSLVFMVLRPEEEERLGAG 322 (343)
Q Consensus 269 L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~tg~~~r~~~~ 322 (343)
|+|||+|++|++|+++|++||.||+.|+++|++||+||++|+|+||++|++...
T Consensus 202 L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~ 255 (289)
T PLN02608 202 LPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKS 255 (289)
T ss_pred cccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCccccc
Confidence 799999999999999999999999999999999999999999999999988553
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=2.7e-67 Score=494.09 Aligned_cols=229 Identities=30% Similarity=0.419 Sum_probs=208.1
Q ss_pred cHHHHHHHHHHHHHhcCCChhhhhHHHhhhccccCCCCcceeecCC---CCCccccCcccCCCC-CCchhhHHHHHHHHH
Q 039892 37 RFSQIMQDTITNKQITSPTTAAATLRLFFHDCLLNGCDSSILITST---PFNKAERDADINLSL-PGDAFDVITRAKTAL 112 (343)
Q Consensus 37 ~~e~iV~~~v~~~~~~d~~~a~~lLRL~FHDcfv~GCDgSiLL~~~---~~~~~E~~~~~N~~l-~g~~~~vId~iK~~l 112 (343)
..++||++.|++.+. +++++|++|||+||||| +||+|+++++. ....+|+++++|.+| ++ |++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~--~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~--~~~i~~iK~~~ 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSG--TYDKETKTGGSNGTIRFDPELNHGANAGLDIA--RKLLEPIKKKY 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHh--ccccccCCCCCCccccchhhcCCccccchHHH--HHHHHHHHHHc
Confidence 457899999999999 99999999999999999 58888877543 223479999999999 66 99999999986
Q ss_pred HhhCCCCccHHHHHHHhhHhHHHhhCCCcccccCCccCCCCcccccccCCCCCCCCCHHHHHHHHHHCCCCcccceeeec
Q 039892 113 ELQCPNTVSCSDILAVATRDLVTMVGGPYYNVYLGRKDVRVSKAADVEGNLPKPTMPMSQIIDVFAKRKFSVQEMVALSG 192 (343)
Q Consensus 113 e~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG 192 (343)
| +||||||||||||+||+++|||.|+|++||+|+.++....++.+||.|+.++++|++.|+++||+++|||+|+|
T Consensus 86 ----~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsG 160 (253)
T cd00691 86 ----P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSG 160 (253)
T ss_pred ----C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcc
Confidence 4 89999999999999999999999999999999999987778789999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCCCCCcchhhhhcccCCcc-----
Q 039892 193 AHTIGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMSPNKFDNLYYQNLPKGLG----- 267 (343)
Q Consensus 193 aHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~g----- 267 (343)
|||||++||.. ++|.| + |..||.+|||+||+||+.++|
T Consensus 161 aHTiG~a~c~~-----~~~~g--------------------~------------~~~tp~~FDn~Yy~~ll~~~g~~~~~ 203 (253)
T cd00691 161 AHTLGRCHKER-----SGYDG--------------------P------------WTKNPLKFDNSYFKELLEEDWKLPTP 203 (253)
T ss_pred cceeecccccC-----CCCCC--------------------C------------CCCCCCcccHHHHHHHhcCCCccCcC
Confidence 99999999953 23322 1 125899999999999999999
Q ss_pred ---ccccccccCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCC
Q 039892 268 ---LLESDHGLFNDPRTKPYVELYARDQNEFFKALLELWRSLVFMVLR 312 (343)
Q Consensus 268 ---lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~ 312 (343)
+|+||++|+.|++|+++|++||.|+++|+++|++||+||++|+|.
T Consensus 204 ~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 204 GLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred cceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999996
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=8.5e-66 Score=482.55 Aligned_cols=231 Identities=30% Similarity=0.443 Sum_probs=207.2
Q ss_pred ccccc--cCCccHHHHHHHHHHHHHhcCCChhhhhHHHhhh-----ccccC--CCCcceeecCCCCCccccCcccCCCC-
Q 039892 28 IDYYS--KSCPRFSQIMQDTITNKQITSPTTAAATLRLFFH-----DCLLN--GCDSSILITSTPFNKAERDADINLSL- 97 (343)
Q Consensus 28 ~~fY~--~sCP~~e~iV~~~v~~~~~~d~~~a~~lLRL~FH-----Dcfv~--GCDgSiLL~~~~~~~~E~~~~~N~~l- 97 (343)
.+||. +-|+++++.+++.+++.+ .|++++|.+|||+|| ||+++ ||||||.. .+|+++++|.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~ 75 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIH 75 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHH
Confidence 35664 448899999999999977 789999999999999 88887 99999944 369999999999
Q ss_pred CCchhhHHHHHHHHHHhhCCCCccHHHHHHHhhHhHHHhhCCCcccccCCccCCCCcccccccCCCCCCCCCHHHHHHHH
Q 039892 98 PGDAFDVITRAKTALELQCPNTVSCSDILAVATRDLVTMVGGPYYNVYLGRKDVRVSKAADVEGNLPKPTMPMSQIIDVF 177 (343)
Q Consensus 98 ~g~~~~vId~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F 177 (343)
++ |++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|+++++. +++||.|+.++++|++.|
T Consensus 76 ~~--~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F 145 (250)
T PLN02364 76 IA--LRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVF 145 (250)
T ss_pred HH--HHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHH
Confidence 66 99999999997 589999999999999999999999999999999998863 468999999999999999
Q ss_pred HH-CCCCcccceeeecccccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCCCCCcch
Q 039892 178 AK-RKFSVQEMVALSGAHTIGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMSPNKFDN 256 (343)
Q Consensus 178 ~~-~Gl~~~dlVaLsGaHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDn 256 (343)
++ +|||++|||+|+||||||++|| .|+ +|.| ++ ..||.+|||
T Consensus 146 ~~~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g--------------------~~------------~~tp~~fDn 188 (250)
T PLN02364 146 AKQMGLSDKDIVALSGAHTLGRCHK----DRS-GFEG--------------------AW------------TSNPLIFDN 188 (250)
T ss_pred HHhcCCCHHHheeeecceeeccccC----CCC-CCCC--------------------CC------------CCCCCccch
Confidence 97 5999999999999999999999 354 3322 11 258999999
Q ss_pred hhhhcccCC--ccccc--cccccCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCC
Q 039892 257 LYYQNLPKG--LGLLE--SDHGLFNDPRTKPYVELYARDQNEFFKALLELWRSLVFMVLR 312 (343)
Q Consensus 257 ~Yy~~l~~~--~glL~--SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~ 312 (343)
+||++|+.+ +|+|. |||+|+.|++|+.+|++||.||+.|+++|++||+||++||+.
T Consensus 189 ~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 189 SYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999999 89876 999999999999999999999999999999999999999974
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.7e-63 Score=480.02 Aligned_cols=237 Identities=25% Similarity=0.339 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHHhcCC---ChhhhhHHHhhhcccc------------CCCCcceeecCCCCCccccCcccCCCCCCchh
Q 039892 38 FSQIMQDTITNKQITSP---TTAAATLRLFFHDCLL------------NGCDSSILITSTPFNKAERDADINLSLPGDAF 102 (343)
Q Consensus 38 ~e~iV~~~v~~~~~~d~---~~a~~lLRL~FHDcfv------------~GCDgSiLL~~~~~~~~E~~~~~N~~l~g~~~ 102 (343)
+|..|++.|++.+..+. ..|+.+|||+||||++ +||||||||+++ .|+++++|.+|+
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~---- 87 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLD---- 87 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHH----
Confidence 57889999999998554 4677899999999996 899999999853 699999999885
Q ss_pred hHHHHHHHHHHhhCCCCccHHHHHHHhhHhHHH-hhCCCcccccCCccCCCCcccccccCCCCCCCCCHHHHHHHHHHCC
Q 039892 103 DVITRAKTALELQCPNTVSCSDILAVATRDLVT-MVGGPYYNVYLGRKDVRVSKAADVEGNLPKPTMPMSQIIDVFAKRK 181 (343)
Q Consensus 103 ~vId~iK~~le~~cp~~VScADilalAar~AV~-~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~G 181 (343)
++|+.+|..+|+.| |||||||+||||+||+ ++|||.|+|++||+|++++. ++++||.|+.++++|++.|+++|
T Consensus 88 ~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~G 161 (328)
T cd00692 88 EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADAG 161 (328)
T ss_pred HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcC
Confidence 79999999999998 9999999999999999 56999999999999999885 44689999999999999999999
Q ss_pred CCcccceeeecccccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCCCCCcchhhhhc
Q 039892 182 FSVQEMVALSGAHTIGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMSPNKFDNLYYQN 261 (343)
Q Consensus 182 l~~~dlVaLsGaHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDn~Yy~~ 261 (343)
||.+|||+|+||||||++|. .||+++ .+++| .||.+|||+||+|
T Consensus 162 f~~~E~VaLsGAHTiG~a~~---------------~Dps~~--------------------g~p~D-~TP~~FDn~Yf~~ 205 (328)
T cd00692 162 FSPDELVALLAAHSVAAQDF---------------VDPSIA--------------------GTPFD-STPGVFDTQFFIE 205 (328)
T ss_pred CCHHHHhhhcccccccccCC---------------CCCCCC--------------------CCCCC-CCcchhcHHHHHH
Confidence 99999999999999999982 366653 13467 4999999999999
Q ss_pred cc-CCcc-------------------ccccccccCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCchhhccc
Q 039892 262 LP-KGLG-------------------LLESDHGLFNDPRTKPYVELYARDQNEFFKALLELWRSLVFMVLRPEEEERLGA 321 (343)
Q Consensus 262 l~-~~~g-------------------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~tg~~~r~~~ 321 (343)
++ .+++ +|+||++|+.|++|+.+|++||+||++|+++|++||+||++|||... ....|
T Consensus 206 ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~~~--~l~dc 283 (328)
T cd00692 206 TLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQDNI--SLTDC 283 (328)
T ss_pred HHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCcc--hhccC
Confidence 77 5665 49999999999999999999999999999999999999999999844 68899
Q ss_pred ceecc
Q 039892 322 GVMLL 326 (343)
Q Consensus 322 ~~~~~ 326 (343)
+-||=
T Consensus 284 s~v~p 288 (328)
T cd00692 284 SDVIP 288 (328)
T ss_pred cccCC
Confidence 99983
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=3.2e-63 Score=464.60 Aligned_cols=219 Identities=29% Similarity=0.400 Sum_probs=196.4
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHhhhccc-------cCCCCcceeecCCCCCccccCcccCCCCCCchhhHHHHHHHHHH
Q 039892 41 IMQDTITNKQITSPTTAAATLRLFFHDCL-------LNGCDSSILITSTPFNKAERDADINLSLPGDAFDVITRAKTALE 113 (343)
Q Consensus 41 iV~~~v~~~~~~d~~~a~~lLRL~FHDcf-------v~GCDgSiLL~~~~~~~~E~~~~~N~~l~g~~~~vId~iK~~le 113 (343)
-+++.+.+.+ .+...+|.+|||.||||. .+||||||.+. .|+++++|.||+. ++++|+.||+++
T Consensus 19 ~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~-~~~~i~~iK~~~- 89 (251)
T PLN02879 19 RCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDI-AVRLLDPIKELF- 89 (251)
T ss_pred HHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHH-HHHHHHHHHHHc-
Confidence 4466666665 567999999999999996 48999999763 6999999999983 599999999997
Q ss_pred hhCCCCccHHHHHHHhhHhHHHhhCCCcccccCCccCCCCcccccccCCCCCCCCCHHHHHHHHHHCCCCcccceeeecc
Q 039892 114 LQCPNTVSCSDILAVATRDLVTMVGGPYYNVYLGRKDVRVSKAADVEGNLPKPTMPMSQIIDVFAKRKFSVQEMVALSGA 193 (343)
Q Consensus 114 ~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGa 193 (343)
++|||||||+||||+||+++|||.|+|++||+|+.++. ++++||.|+.++++|++.|+++|||++||||||||
T Consensus 90 ----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGa 162 (251)
T PLN02879 90 ----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGG 162 (251)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecc
Confidence 58999999999999999999999999999999999874 45789999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCCCCCcchhhhhcccCC--ccc--c
Q 039892 194 HTIGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMSPNKFDNLYYQNLPKG--LGL--L 269 (343)
Q Consensus 194 HTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~--~gl--L 269 (343)
||||++||. | ++|.|. .| .||.+|||+||++|+.+ +|+ |
T Consensus 163 HTiG~ah~~----r-~g~~g~-------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll~L 205 (251)
T PLN02879 163 HTLGRCHKE----R-SGFEGA-------------------------------WT-PNPLIFDNSYFKEILSGEKEGLLQL 205 (251)
T ss_pred ccccccccc----c-ccCCCC-------------------------------CC-CCccceeHHHHHHHHcCCcCCCccc
Confidence 999999995 4 343221 12 48999999999999999 898 6
Q ss_pred ccccccCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCC
Q 039892 270 ESDHGLFNDPRTKPYVELYARDQNEFFKALLELWRSLVFMVLR 312 (343)
Q Consensus 270 ~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~ 312 (343)
+||++|+.|++|+++|++||.||++||++|++||+||++||+-
T Consensus 206 ~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 206 PTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred hhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 7999999999999999999999999999999999999999985
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.9e-59 Score=441.49 Aligned_cols=223 Identities=34% Similarity=0.459 Sum_probs=205.8
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHhhhccccC--------CCCcceeecCCCCCccccCcccCCCC-CCchhhHHHHHHHH
Q 039892 41 IMQDTITNKQITSPTTAAATLRLFFHDCLLN--------GCDSSILITSTPFNKAERDADINLSL-PGDAFDVITRAKTA 111 (343)
Q Consensus 41 iV~~~v~~~~~~d~~~a~~lLRL~FHDcfv~--------GCDgSiLL~~~~~~~~E~~~~~N~~l-~g~~~~vId~iK~~ 111 (343)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++ +|+++++|.+| ++ +++|+.||.+
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l~~~--~~~l~~ik~~ 73 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGLDKA--LRALEPIKSA 73 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccHHHH--HHHHHHHHHH
Confidence 4888999999999999999999999999996 999999997 39999999986 55 9999999999
Q ss_pred HHhhCCCCccHHHHHHHhhHhHHHhh--CCCcccccCCccCCCCcc--cccccCCCCCCCCCHHHHHHHHHHCCCCcccc
Q 039892 112 LELQCPNTVSCSDILAVATRDLVTMV--GGPYYNVYLGRKDVRVSK--AADVEGNLPKPTMPMSQIIDVFAKRKFSVQEM 187 (343)
Q Consensus 112 le~~cp~~VScADilalAar~AV~~~--GGP~~~v~~GRrD~~~s~--~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dl 187 (343)
+|. |++|||||||++|+++||+.+ |||.|+|++||+|++.+. ...+..++|.|..+++++++.|.++||+++||
T Consensus 74 ~~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~ 151 (255)
T cd00314 74 YDG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSEL 151 (255)
T ss_pred cCC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHH
Confidence 998 899999999999999999999 999999999999999774 34456678888889999999999999999999
Q ss_pred eeee-ccccc-ccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCCCCCcchhhhhcccCC
Q 039892 188 VALS-GAHTI-GFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMSPNKFDNLYYQNLPKG 265 (343)
Q Consensus 188 VaLs-GaHTi-G~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~ 265 (343)
|||+ ||||| |++||..|..|+ |+ +|+.||.+|||+||++++.+
T Consensus 152 VAL~~GaHti~G~~~~~~~~~~~------------------------~~-----------~~~~tp~~fDN~yy~~l~~~ 196 (255)
T cd00314 152 VALSAGAHTLGGKNHGDLLNYEG------------------------SG-----------LWTSTPFTFDNAYFKNLLDM 196 (255)
T ss_pred HhhccCCeeccCcccCCCCCccc------------------------CC-----------CCCCCCCccchHHHHHHhcC
Confidence 9999 99999 999999877664 22 24679999999999999999
Q ss_pred c----------------cccccccccCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHh
Q 039892 266 L----------------GLLESDHGLFNDPRTKPYVELYARDQNEFFKALLELWRSLVF 308 (343)
Q Consensus 266 ~----------------glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 308 (343)
+ ++|+||++|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 197 NWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 8 999999999999999999999999999999999999999975
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=3.8e-56 Score=436.92 Aligned_cols=271 Identities=21% Similarity=0.284 Sum_probs=233.9
Q ss_pred CCCccc-cccCCccHH-HHHHHHHHHHHhcC--------CChhhhhHHHhhhcccc-------CCCC-cceeecCCCCCc
Q 039892 25 RLSIDY-YSKSCPRFS-QIMQDTITNKQITS--------PTTAAATLRLFFHDCLL-------NGCD-SSILITSTPFNK 86 (343)
Q Consensus 25 ~l~~~f-Y~~sCP~~e-~iV~~~v~~~~~~d--------~~~a~~lLRL~FHDcfv-------~GCD-gSiLL~~~~~~~ 86 (343)
.+..+| |.+.+-.+. +.|++.|++.+... ...+|-+|||+|||+.+ +|++ |+|.+.
T Consensus 28 p~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------ 101 (409)
T cd00649 28 PMGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------ 101 (409)
T ss_pred CCCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------
Confidence 455555 555554444 67889999888764 47999999999999985 7986 788775
Q ss_pred cccCcccCCCCCCchhhHHHHHHHHHHhhCCCCccHHHHHHHhhHhHHHhhCCCcccccCCccCCCCcccc---------
Q 039892 87 AERDADINLSLPGDAFDVITRAKTALELQCPNTVSCSDILAVATRDLVTMVGGPYYNVYLGRKDVRVSKAA--------- 157 (343)
Q Consensus 87 ~E~~~~~N~~l~g~~~~vId~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~--------- 157 (343)
+|++++.|.+|.. +..+++.||++. |..||+||+|+||+..|||.+|||.+++.+||.|...+...
T Consensus 102 pe~~~~~N~gL~~-a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~ 176 (409)
T cd00649 102 PLNSWPDNVNLDK-ARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEW 176 (409)
T ss_pred cccCcHhhhhHHH-HHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhc
Confidence 6999999999986 899999999986 45799999999999999999999999999999999754320
Q ss_pred --------------------------cccC--CCCCCCCCHHHHHHHHHHCCCCcccceee-eccccccccccccccccc
Q 039892 158 --------------------------DVEG--NLPKPTMPMSQIIDVFAKRKFSVQEMVAL-SGAHTIGFSHCNEFSGNI 208 (343)
Q Consensus 158 --------------------------~a~~--~LP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGaHTiG~ahc~~f~~Rl 208 (343)
.+++ .||+|..++++|++.|.+||||++||||| +||||||++||..|.+||
T Consensus 177 ~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rl 256 (409)
T cd00649 177 LADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHV 256 (409)
T ss_pred ccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccC
Confidence 1223 69999999999999999999999999999 599999999999999998
Q ss_pred ccCCCCCCCCCCCCHHHHHHHH--HhCCCCCCCCCCcccCC---CCCCCCcchhhhhcccC-------------------
Q 039892 209 YNYSRIPYYDAHYNPRFAEALQ--KACADYQKNPTLSVFND---IMSPNKFDNLYYQNLPK------------------- 264 (343)
Q Consensus 209 ~~f~g~~~~dp~~d~~~~~~L~--~~Cp~~~~~~~~~~~lD---~~tp~~FDn~Yy~~l~~------------------- 264 (343)
. +||++++.|+..|+ +.||...++++....+| +.||.+|||+||++|+.
T Consensus 257 g-------~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~ 329 (409)
T cd00649 257 G-------PEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKN 329 (409)
T ss_pred C-------CCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccC
Confidence 3 69999999999995 89996223333455688 57999999999999998
Q ss_pred -----------------CccccccccccCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHH--HhCCCCC
Q 039892 265 -----------------GLGLLESDHGLFNDPRTKPYVELYARDQNEFFKALLELWRSL--VFMVLRP 313 (343)
Q Consensus 265 -----------------~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~igv~t 313 (343)
++|+|+||++|+.|++|+++|++||.|+++||++|++||+|| +.+|+++
T Consensus 330 ~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~ 397 (409)
T cd00649 330 AAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKS 397 (409)
T ss_pred ccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchh
Confidence 569999999999999999999999999999999999999999 6899987
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=5e-53 Score=438.28 Aligned_cols=271 Identities=20% Similarity=0.232 Sum_probs=230.0
Q ss_pred CCCccc-cccCCccHH-HHHHHHHHHHHhcC--------CChhhhhHHHhhhcccc-------CCC-CcceeecCCCCCc
Q 039892 25 RLSIDY-YSKSCPRFS-QIMQDTITNKQITS--------PTTAAATLRLFFHDCLL-------NGC-DSSILITSTPFNK 86 (343)
Q Consensus 25 ~l~~~f-Y~~sCP~~e-~iV~~~v~~~~~~d--------~~~a~~lLRL~FHDcfv-------~GC-DgSiLL~~~~~~~ 86 (343)
.+..+| |.+.+-... +.|++.|++.+... ...+|-+|||+||++.+ +|| .|+|.+.
T Consensus 38 p~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------ 111 (716)
T TIGR00198 38 PMGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------ 111 (716)
T ss_pred CCCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------
Confidence 355555 665553332 46888888888764 37999999999999975 688 5888775
Q ss_pred cccCcccCCCCCCchhhHHHHHHHHHHhhCCCCccHHHHHHHhhHhHHHhhCCCcccccCCccCCCCcc-----------
Q 039892 87 AERDADINLSLPGDAFDVITRAKTALELQCPNTVSCSDILAVATRDLVTMVGGPYYNVYLGRKDVRVSK----------- 155 (343)
Q Consensus 87 ~E~~~~~N~~l~g~~~~vId~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~----------- 155 (343)
+|++++.|.+|.. ++.+++.||++ ||++|||||||+||+++|||.+|||.|+|.+||+|+..+.
T Consensus 112 P~~sw~~N~~Ldk-a~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~ 186 (716)
T TIGR00198 112 PLNSWPDNVNLDK-ARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEW 186 (716)
T ss_pred cccCchhhhhHHH-HHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccch
Confidence 6999999999986 89999999885 8999999999999999999999999999999999994321
Q ss_pred ----c-----------c----------cccCCCCCCCCCHHHHHHHHHHCCCCcccceeee-cccccccccccccccccc
Q 039892 156 ----A-----------A----------DVEGNLPKPTMPMSQIIDVFAKRKFSVQEMVALS-GAHTIGFSHCNEFSGNIY 209 (343)
Q Consensus 156 ----~-----------~----------~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~ahc~~f~~Rl~ 209 (343)
. . +....+|+|..++++|++.|.++|||++|||||+ ||||||++||.+|.+||
T Consensus 187 l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl- 265 (716)
T TIGR00198 187 LTSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI- 265 (716)
T ss_pred hhccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-
Confidence 0 0 1112699999999999999999999999999996 99999999999999998
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHhCCCCCC--CCCCcccCC---CCCCCCcchhhhhcccCC-------------------
Q 039892 210 NYSRIPYYDAHYNPRFAEALQKACADYQK--NPTLSVFND---IMSPNKFDNLYYQNLPKG------------------- 265 (343)
Q Consensus 210 ~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~--~~~~~~~lD---~~tp~~FDn~Yy~~l~~~------------------- 265 (343)
++||++++.|++.|+..||...+ .++....+| +.||.+|||+||+||+.+
T Consensus 266 ------g~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~ 339 (716)
T TIGR00198 266 ------GPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDA 339 (716)
T ss_pred ------CCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeeccc
Confidence 27999999999999999985222 222246677 679999999999999975
Q ss_pred ---------------ccccccccccCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHHH--hCCCCC
Q 039892 266 ---------------LGLLESDHGLFNDPRTKPYVELYARDQNEFFKALLELWRSLV--FMVLRP 313 (343)
Q Consensus 266 ---------------~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~igv~t 313 (343)
+++|+||++|..|++|+++|+.||.|++.|+++|++||+||+ .+|++.
T Consensus 340 ~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 340 PEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred ccccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 689999999999999999999999999999999999999998 466654
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=9.5e-50 Score=411.81 Aligned_cols=271 Identities=20% Similarity=0.263 Sum_probs=230.2
Q ss_pred CCCccc-cccCCccHH-HHHHHHHHHHHhcC--------CChhhhhHHHhhhcccc-------CCCC-cceeecCCCCCc
Q 039892 25 RLSIDY-YSKSCPRFS-QIMQDTITNKQITS--------PTTAAATLRLFFHDCLL-------NGCD-SSILITSTPFNK 86 (343)
Q Consensus 25 ~l~~~f-Y~~sCP~~e-~iV~~~v~~~~~~d--------~~~a~~lLRL~FHDcfv-------~GCD-gSiLL~~~~~~~ 86 (343)
.+..+| |.+-+-... +.|++.|++.+... ...+|-+|||+||++.+ +||+ |+|.+.
T Consensus 40 p~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------ 113 (726)
T PRK15061 40 PMGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------ 113 (726)
T ss_pred CCCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------
Confidence 455556 665554433 56888888888754 47999999999999985 7886 788765
Q ss_pred cccCcccCCCCCCchhhHHHHHHHHHHhhCCCCccHHHHHHHhhHhHHHhhCCCcccccCCccCCCCcccc---------
Q 039892 87 AERDADINLSLPGDAFDVITRAKTALELQCPNTVSCSDILAVATRDLVTMVGGPYYNVYLGRKDVRVSKAA--------- 157 (343)
Q Consensus 87 ~E~~~~~N~~l~g~~~~vId~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~--------- 157 (343)
+|.+++.|.+|.. +..+++.||++. |..||.||+|+||+..|||.+|||.+++.+||.|...+...
T Consensus 114 pe~~w~~N~gL~k-a~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~ 188 (726)
T PRK15061 114 PLNSWPDNVNLDK-ARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEW 188 (726)
T ss_pred ccccchhhhhHHH-HHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccc
Confidence 6999999999986 899999999987 45799999999999999999999999999999998654321
Q ss_pred -----------------------------cccCCCCCCCCCHHHHHHHHHHCCCCcccceeee-cccccccccccccccc
Q 039892 158 -----------------------------DVEGNLPKPTMPMSQIIDVFAKRKFSVQEMVALS-GAHTIGFSHCNEFSGN 207 (343)
Q Consensus 158 -----------------------------~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~ahc~~f~~R 207 (343)
+-...+|+|..++.+|++.|.+||||++|||||+ ||||||++||..|.+|
T Consensus 189 l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~r 268 (726)
T PRK15061 189 LGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASH 268 (726)
T ss_pred cccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccc
Confidence 0012379999999999999999999999999995 9999999999999999
Q ss_pred cccCCCCCCCCCCCCHHHHHHHH--HhCCCCCCCCCCcccCC---CCCCCCcchhhhhcccCC-----------------
Q 039892 208 IYNYSRIPYYDAHYNPRFAEALQ--KACADYQKNPTLSVFND---IMSPNKFDNLYYQNLPKG----------------- 265 (343)
Q Consensus 208 l~~f~g~~~~dp~~d~~~~~~L~--~~Cp~~~~~~~~~~~lD---~~tp~~FDn~Yy~~l~~~----------------- 265 (343)
| ++||.+++.+++.|. +.||.+.+.++.+..+| +.||.+|||+||++|+.+
T Consensus 269 l-------gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~ 341 (726)
T PRK15061 269 V-------GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPK 341 (726)
T ss_pred c-------CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCcccccccc
Confidence 8 379999999999984 99996323334455688 679999999999999985
Q ss_pred -------------------ccccccccccCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHH--HhCCCCC
Q 039892 266 -------------------LGLLESDHGLFNDPRTKPYVELYARDQNEFFKALLELWRSL--VFMVLRP 313 (343)
Q Consensus 266 -------------------~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~igv~t 313 (343)
.++|+||++|..|++++++|++||.|+++|+++|++||+|| ..+|+++
T Consensus 342 ~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ 410 (726)
T PRK15061 342 DGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKS 410 (726)
T ss_pred CccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchh
Confidence 58999999999999999999999999999999999999999 4477655
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.2e-49 Score=372.88 Aligned_cols=219 Identities=23% Similarity=0.299 Sum_probs=179.0
Q ss_pred HHHHHHHHHhcCCChhhhhHHHhhhccc-------cCCCCcceeecCCCCCccccC-cccCCCCCCchhhHHHHHHHHHH
Q 039892 42 MQDTITNKQITSPTTAAATLRLFFHDCL-------LNGCDSSILITSTPFNKAERD-ADINLSLPGDAFDVITRAKTALE 113 (343)
Q Consensus 42 V~~~v~~~~~~d~~~a~~lLRL~FHDcf-------v~GCDgSiLL~~~~~~~~E~~-~~~N~~l~g~~~~vId~iK~~le 113 (343)
|...-..+...++++++++|||+||||| ++||||||+++.. .+|+. .+.|.++++ |++|+.+
T Consensus 27 v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l~~--~~~i~~~----- 96 (264)
T cd08201 27 VTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTLNF--FVNFYSP----- 96 (264)
T ss_pred cccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhcccc--ceeeccC-----
Confidence 4444445566889999999999999999 8999999999743 36777 455667887 8877543
Q ss_pred hhCCCCccHHHHHHHhhHhHHHhhCCCcccccCCccCCCCcccccccCCCCCCCCCHHHHHHHHHHCCCCcccceeeec-
Q 039892 114 LQCPNTVSCSDILAVATRDLVTMVGGPYYNVYLGRKDVRVSKAADVEGNLPKPTMPMSQIIDVFAKRKFSVQEMVALSG- 192 (343)
Q Consensus 114 ~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG- 192 (343)
+||||||||||||+||+.+|||.|+|++||+|++++... .||.|+.++++|++.|+++||+++|||+|||
T Consensus 97 -----~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsgg 167 (264)
T cd08201 97 -----RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVAC 167 (264)
T ss_pred -----ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecC
Confidence 699999999999999999999999999999999987642 4999999999999999999999999999995
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCCCCCcchhhhhcccCCc--c---
Q 039892 193 AHTIGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMSPNKFDNLYYQNLPKGL--G--- 267 (343)
Q Consensus 193 aHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~--g--- 267 (343)
|||||++||..|.++.- | . ..++...++| .||.+|||+||.+++.+. +
T Consensus 168 aHTiG~ahc~~f~~~~~---------~---------------g--~~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~ 220 (264)
T cd08201 168 GHTLGGVHSEDFPEIVP---------P---------------G--SVPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLV 220 (264)
T ss_pred CeeeeecccccchhhcC---------C---------------c--cccCCCCCCC-CCccccchHHHHHHhcCCCCCcee
Confidence 99999999998877641 1 0 0001123466 499999999999999874 2
Q ss_pred -----ccccccccCCCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHh
Q 039892 268 -----LLESDHGLFNDPRTKPYVELYARDQNEFFKALLELWRSLVF 308 (343)
Q Consensus 268 -----lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 308 (343)
.+.||..+++.+.-. .++..| +++.|.+..+..+.||.+
T Consensus 221 ~~~~~~~~sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 221 VGPNNTTNSDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred ecCCCCccchhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 357999999765543 456677 799999999999999964
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=2e-38 Score=300.69 Aligned_cols=220 Identities=19% Similarity=0.257 Sum_probs=179.7
Q ss_pred HHHHHHHhcCCChhhhhHHHhhhcccc-------CCCCcc-eeecCCCCCccccCcccCCC--CCCchhhHHHHHHHHHH
Q 039892 44 DTITNKQITSPTTAAATLRLFFHDCLL-------NGCDSS-ILITSTPFNKAERDADINLS--LPGDAFDVITRAKTALE 113 (343)
Q Consensus 44 ~~v~~~~~~d~~~a~~lLRL~FHDcfv-------~GCDgS-iLL~~~~~~~~E~~~~~N~~--l~g~~~~vId~iK~~le 113 (343)
+.+++.+......++.||||+||++.+ +|++|+ |.|. +|++++.|.+ |.. ++.+++.||++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~~~~L~~-~~~~Le~ik~~~~ 89 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNEPEELAK-VLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccCcHHHHH-HHHHHHHHHHHhc
Confidence 566777777778899999999999975 799999 7665 6999999998 876 7999999999984
Q ss_pred hh-CC-CCccHHHHHHHhhHhHHHhhCC-----CcccccCCccCCCCccccccc---CCCCCCC------------CCHH
Q 039892 114 LQ-CP-NTVSCSDILAVATRDLVTMVGG-----PYYNVYLGRKDVRVSKAADVE---GNLPKPT------------MPMS 171 (343)
Q Consensus 114 ~~-cp-~~VScADilalAar~AV~~~GG-----P~~~v~~GRrD~~~s~~~~a~---~~LP~p~------------~~~~ 171 (343)
.. -+ ..||.||+|+||+..|||.+|| |.+++.+||.|...+... ++ ..+|.+. ...+
T Consensus 90 ~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td-~~sf~~l~P~adg~rny~~~~~~~~~~~ 168 (297)
T cd08200 90 ESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTD-VESFEVLEPKADGFRNYLKKGYRVPPEE 168 (297)
T ss_pred ccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCC-cccccccCCCCcccccccccCCCCCHHH
Confidence 21 12 2699999999999999999999 999999999999876322 21 1345332 2347
Q ss_pred HHHHHHHHCCCCcccceeeeccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCC
Q 039892 172 QIIDVFAKRKFSVQEMVALSGAH-TIGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMS 250 (343)
Q Consensus 172 ~l~~~F~~~Gl~~~dlVaLsGaH-TiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~t 250 (343)
.|++.|.++|||++|||||+||| ++|..|..+ +.| || +.+
T Consensus 169 ~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G--------------------~w------------T~~ 209 (297)
T cd08200 169 MLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG--------------------VF------------TDR 209 (297)
T ss_pred HHHHHHHhCCCChHHHhheecchhhcccCCCCC-------CCC--------------------CC------------cCC
Confidence 89999999999999999999997 699877432 111 34 358
Q ss_pred CCCcchhhhhcccCC--------------------cc-----ccccccccCCCCCCHHHHHHHhhC--HHHHHHHHHHHH
Q 039892 251 PNKFDNLYYQNLPKG--------------------LG-----LLESDHGLFNDPRTKPYVELYARD--QNEFFKALLELW 303 (343)
Q Consensus 251 p~~FDn~Yy~~l~~~--------------------~g-----lL~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am 303 (343)
|.+|||.||+||+.. .| .+.+|..|.+|++.|++|+.||.| +++||+||++||
T Consensus 210 p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~ 289 (297)
T cd08200 210 PGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAW 289 (297)
T ss_pred CCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 999999999999851 01 267899999999999999999998 999999999999
Q ss_pred HHHHhCC
Q 039892 304 RSLVFMV 310 (343)
Q Consensus 304 ~Km~~ig 310 (343)
.||.++.
T Consensus 290 ~Klmeld 296 (297)
T cd08200 290 TKVMNLD 296 (297)
T ss_pred HHHHhcC
Confidence 9999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3e-33 Score=291.01 Aligned_cols=221 Identities=17% Similarity=0.264 Sum_probs=176.1
Q ss_pred HHHHHHHH---HHhcCCChhhhhHHHhhhcccc-------CCCCcc-eeecCCCCCccccCcccC--CCCCCchhhHHHH
Q 039892 41 IMQDTITN---KQITSPTTAAATLRLFFHDCLL-------NGCDSS-ILITSTPFNKAERDADIN--LSLPGDAFDVITR 107 (343)
Q Consensus 41 iV~~~v~~---~~~~d~~~a~~lLRL~FHDcfv-------~GCDgS-iLL~~~~~~~~E~~~~~N--~~l~g~~~~vId~ 107 (343)
+|++.|.. .+....-..+.|||++||++.+ +|++|+ |.|. +|++++.| .+|.. ++++++.
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~-vl~~Le~ 501 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAK-VLAVLEK 501 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHH-HHHHHHH
Confidence 34555544 3556667889999999999975 799999 7775 69999999 78876 7999999
Q ss_pred HHHHHHhhCCCCccHHHHHHHhhHhHHHhh---CCC--cccccCCccCCCCcccccccCCCC---CC------------C
Q 039892 108 AKTALELQCPNTVSCSDILAVATRDLVTMV---GGP--YYNVYLGRKDVRVSKAADVEGNLP---KP------------T 167 (343)
Q Consensus 108 iK~~le~~cp~~VScADilalAar~AV~~~---GGP--~~~v~~GRrD~~~s~~~~a~~~LP---~p------------~ 167 (343)
||++... ..||.||+|+||+..|||.+ ||| .+++.+||.|++.... +++...| .+ .
T Consensus 502 Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~ 577 (716)
T TIGR00198 502 IQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAV 577 (716)
T ss_pred HHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccC
Confidence 9998742 26999999999999999998 898 5789999999987642 2322222 11 1
Q ss_pred CCHHHHHHHHHHCCCCcccceeeecc-cccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccC
Q 039892 168 MPMSQIIDVFAKRKFSVQEMVALSGA-HTIGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFN 246 (343)
Q Consensus 168 ~~~~~l~~~F~~~Gl~~~dlVaLsGa-HTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~l 246 (343)
.....|++.|.++|||++|||||+|| |++|+.|-.+ +.| |+
T Consensus 578 ~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~G--------------------~~----------- 619 (716)
T TIGR00198 578 TPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------KHG--------------------VF----------- 619 (716)
T ss_pred CHHHHHHHHHHhCCCChHHHHheecchhhccccCCCC-------CCC--------------------CC-----------
Confidence 23566999999999999999999999 5999988532 111 33
Q ss_pred CCCCCCCcchhhhhcccCCc--------------------c--cc---ccccccCCCCCCHHHHHHHhhCH--HHHHHHH
Q 039892 247 DIMSPNKFDNLYYQNLPKGL--------------------G--LL---ESDHGLFNDPRTKPYVELYARDQ--NEFFKAL 299 (343)
Q Consensus 247 D~~tp~~FDn~Yy~~l~~~~--------------------g--lL---~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~F 299 (343)
+.+|.+|||.||+||+... | .+ .+|..|.+|++.|++|+.||.|+ ++||+||
T Consensus 620 -T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF 698 (716)
T TIGR00198 620 -TDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDF 698 (716)
T ss_pred -cCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHH
Confidence 3579999999999998621 1 22 68999999999999999999997 8999999
Q ss_pred HHHHHHHHhCCC
Q 039892 300 LELWRSLVFMVL 311 (343)
Q Consensus 300 a~Am~Km~~igv 311 (343)
++||.|+.+++-
T Consensus 699 ~~Aw~Klm~ldr 710 (716)
T TIGR00198 699 VAAWTKVMNLDR 710 (716)
T ss_pred HHHHHHHHhCCC
Confidence 999999999874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=7.5e-33 Score=286.67 Aligned_cols=221 Identities=18% Similarity=0.281 Sum_probs=179.9
Q ss_pred HHHHHHHhcCCChhhhhHHHhhhcccc-------CCCCcc-eeecCCCCCccccCcccCC--CCCCchhhHHHHHHHHHH
Q 039892 44 DTITNKQITSPTTAAATLRLFFHDCLL-------NGCDSS-ILITSTPFNKAERDADINL--SLPGDAFDVITRAKTALE 113 (343)
Q Consensus 44 ~~v~~~~~~d~~~a~~lLRL~FHDcfv-------~GCDgS-iLL~~~~~~~~E~~~~~N~--~l~g~~~~vId~iK~~le 113 (343)
..++..+....-..+.|||++||++.+ +|++|+ |.|. +|++++.|. +|.. ++++++.||++.+
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~-vl~~LE~Ik~~f~ 514 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAK-VLAVLEGIQAEFN 514 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHH-HHHHHHHHHHHHh
Confidence 456666777777899999999999975 799999 8776 699999998 8876 7999999999996
Q ss_pred hhCC--CCccHHHHHHHhhHhHHHhh---CC--CcccccCCccCCCCcccccccC---CCCCCC------------CCHH
Q 039892 114 LQCP--NTVSCSDILAVATRDLVTMV---GG--PYYNVYLGRKDVRVSKAADVEG---NLPKPT------------MPMS 171 (343)
Q Consensus 114 ~~cp--~~VScADilalAar~AV~~~---GG--P~~~v~~GRrD~~~s~~~~a~~---~LP~p~------------~~~~ 171 (343)
..-. ..||.||+|+||+..|||.+ || |.+++.+||.|++... .+++. .+|.+. ....
T Consensus 515 ~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~-td~esf~~l~P~Adgfrny~~~~~~~~~e~ 593 (726)
T PRK15061 515 AAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQ-TDVESFAVLEPKADGFRNYLKKGYSVSPEE 593 (726)
T ss_pred hccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCC-CCcccccccCCCCccccccccccCCCCHHH
Confidence 5321 36999999999999999998 68 9999999999998753 23322 456543 1347
Q ss_pred HHHHHHHHCCCCcccceeeeccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCC
Q 039892 172 QIIDVFAKRKFSVQEMVALSGAH-TIGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMS 250 (343)
Q Consensus 172 ~l~~~F~~~Gl~~~dlVaLsGaH-TiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~t 250 (343)
.|++.|.++|||++|||||+||| ++|..|-.++ .| |+ +.+
T Consensus 594 ~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~G--------------------~~------------T~~ 634 (726)
T PRK15061 594 LLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG--------------------VF------------TDR 634 (726)
T ss_pred HHHHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC--------------------CC------------cCC
Confidence 89999999999999999999997 7888763221 11 33 357
Q ss_pred CCCcchhhhhcccCC----------c----------c---c--cccccccCCCCCCHHHHHHHhhC--HHHHHHHHHHHH
Q 039892 251 PNKFDNLYYQNLPKG----------L----------G---L--LESDHGLFNDPRTKPYVELYARD--QNEFFKALLELW 303 (343)
Q Consensus 251 p~~FDn~Yy~~l~~~----------~----------g---l--L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am 303 (343)
|.+|||.||+||+.. . | + +.+|..|.+|++.|++|+.||.| +++||+||++||
T Consensus 635 p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw 714 (726)
T PRK15061 635 PGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAW 714 (726)
T ss_pred CCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 999999999999851 1 1 1 47899999999999999999999 999999999999
Q ss_pred HHHHhCCC
Q 039892 304 RSLVFMVL 311 (343)
Q Consensus 304 ~Km~~igv 311 (343)
.|+.+++-
T Consensus 715 ~Kvmeldr 722 (726)
T PRK15061 715 TKVMNLDR 722 (726)
T ss_pred HHHHhCCC
Confidence 99999873
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.7e-28 Score=241.87 Aligned_cols=238 Identities=20% Similarity=0.235 Sum_probs=183.8
Q ss_pred ChhhhhHHHhhhcccc-------CCCCcceeecCCCCCccccCcccCCCCCCchhhHHHHHHHHHHhhCCCCccHHHHHH
Q 039892 55 TTAAATLRLFFHDCLL-------NGCDSSILITSTPFNKAERDADINLSLPGDAFDVITRAKTALELQCPNTVSCSDILA 127 (343)
Q Consensus 55 ~~a~~lLRL~FHDcfv-------~GCDgSiLL~~~~~~~~E~~~~~N~~l~g~~~~vId~iK~~le~~cp~~VScADila 127 (343)
..+|-+|||+||-+.+ +|..+. ...+.++.++|.|.+|.. |+.++..||+++ +..||.||++.
T Consensus 93 hYGplfIRmAWHsAGTYRi~DGRGGa~~G-----~qRFaPlnSWPDN~nLDK-arRLLWPIKkKY----G~kiSWaDL~i 162 (730)
T COG0376 93 HYGPLFIRMAWHSAGTYRIGDGRGGAGGG-----QQRFAPLNSWPDNANLDK-ARRLLWPIKKKY----GRKISWADLII 162 (730)
T ss_pred ccccceeeeeecccCceecccCCCCCCCC-----ceecccccCCCcccchHH-HHHHhhhHhHhh----cccccHhHhhh
Confidence 4789999999999975 333222 122457889999999987 899999999987 56899999999
Q ss_pred HhhHhHHHhhCCCcccccCCccCCCCccc--------------------------------------ccccCCCCCCCCC
Q 039892 128 VATRDLVTMVGGPYYNVYLGRKDVRVSKA--------------------------------------ADVEGNLPKPTMP 169 (343)
Q Consensus 128 lAar~AV~~~GGP~~~v~~GRrD~~~s~~--------------------------------------~~a~~~LP~p~~~ 169 (343)
||+..|+|.+|++.+.+..||.|--.+.. .++ ...|+|..+
T Consensus 163 LaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGp-ng~PDpl~a 241 (730)
T COG0376 163 LAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGP-NGNPDPLAA 241 (730)
T ss_pred hhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCCC-CCCCChhhh
Confidence 99999999999999999999999766654 122 458999999
Q ss_pred HHHHHHHHHHCCCCcccceeee-cccccccccccccccccccCCCCCCCCCCCCHHHHHHH--HHhCCCCCCCCCCc---
Q 039892 170 MSQIIDVFAKRKFSVQEMVALS-GAHTIGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEAL--QKACADYQKNPTLS--- 243 (343)
Q Consensus 170 ~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L--~~~Cp~~~~~~~~~--- 243 (343)
..+++..|+++++|.+|.|||+ ||||+|++|...-.+-+ +++|.-.+--.+-| ++.|..+.+.+.-+
T Consensus 242 A~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGl 314 (730)
T COG0376 242 ARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQQGLGWANTYGSGKGPDTITSGL 314 (730)
T ss_pred HHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhhhccccccccCCCcCcccccccc
Confidence 9999999999999999999999 69999999976422111 24554322222222 22332211111111
Q ss_pred ccCCCCCCCCcchhhhhcccCC-----------------------------------ccccccccccCCCCCCHHHHHHH
Q 039892 244 VFNDIMSPNKFDNLYYQNLPKG-----------------------------------LGLLESDHGLFNDPRTKPYVELY 288 (343)
Q Consensus 244 ~~lD~~tp~~FDn~Yy~~l~~~-----------------------------------~glL~SD~~L~~d~~t~~~V~~y 288 (343)
..--+.||++|||+||.+|+.. -.||.+|.+|.-||..+++.++|
T Consensus 315 E~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf 394 (730)
T COG0376 315 EGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEKISRRF 394 (730)
T ss_pred cccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHHHHHHH
Confidence 1123568999999999999863 15899999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHhCC
Q 039892 289 ARDQNEFFKALLELWRSLVFMV 310 (343)
Q Consensus 289 A~d~~~F~~~Fa~Am~Km~~ig 310 (343)
..|++.|.+.|++||.||.+-+
T Consensus 395 ~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 395 LEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred HhCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999997643
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1e-11 Score=125.12 Aligned_cols=215 Identities=21% Similarity=0.344 Sum_probs=151.3
Q ss_pred HHHHHHhcCCChhhhhHHHhhhcccc-------CCCCcc-eeecCCCCCccccCcccCC--CCCCchhhHHHHHHHHHHh
Q 039892 45 TITNKQITSPTTAAATLRLFFHDCLL-------NGCDSS-ILITSTPFNKAERDADINL--SLPGDAFDVITRAKTALEL 114 (343)
Q Consensus 45 ~v~~~~~~d~~~a~~lLRL~FHDcfv-------~GCDgS-iLL~~~~~~~~E~~~~~N~--~l~g~~~~vId~iK~~le~ 114 (343)
.++..+....-....|+-.+|-.+-+ +|.+|. |.|. +.++++-|. -|.. .+.+++.|++..+
T Consensus 453 ~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~k-vl~~le~iq~~fn- 524 (730)
T COG0376 453 ALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAK-VLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHH-HHHHHHHHHHHhc-
Confidence 45566666677788899999887753 677776 6665 588999995 3443 6888899988886
Q ss_pred hCCCCccHHHHHHHhhHhHHHhh---CCCc--ccccCCccCCCCcccccccC-C-C-CCC--C----------CCHHHHH
Q 039892 115 QCPNTVSCSDILAVATRDLVTMV---GGPY--YNVYLGRKDVRVSKAADVEG-N-L-PKP--T----------MPMSQII 174 (343)
Q Consensus 115 ~cp~~VScADilalAar~AV~~~---GGP~--~~v~~GRrD~~~s~~~~a~~-~-L-P~p--~----------~~~~~l~ 174 (343)
..||.||+|+|++..+||.+ +|-. +++.+||.|+..... ++.. . | |-. + .+..-|+
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqt-Dv~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQT-DVESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhc-chhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 36999999999999999864 6665 566789999976543 2211 1 1 211 1 1234478
Q ss_pred HHHHHCCCCcccceeeecccc-cccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCCCcccCCCCCCCC
Q 039892 175 DVFAKRKFSVQEMVALSGAHT-IGFSHCNEFSGNIYNYSRIPYYDAHYNPRFAEALQKACADYQKNPTLSVFNDIMSPNK 253 (343)
Q Consensus 175 ~~F~~~Gl~~~dlVaLsGaHT-iG~ahc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~ 253 (343)
+.-+-.+||..||++|.||-- +|. ||.|+. ..|. +..|..
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~-----------n~g~s~--------------------------~GVf--T~~pg~ 641 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGA-----------NYGGSK--------------------------HGVF--TDRPGV 641 (730)
T ss_pred HHHHHhccCCccceEEEcceEeecc-----------CCCCCc--------------------------ccee--ccCccc
Confidence 888889999999999998753 232 222211 0111 225666
Q ss_pred cchhhhhcccCC----------c----------cc-----cccccccCCCCCCHHHHHHHhhC--HHHHHHHHHHHHHHH
Q 039892 254 FDNLYYQNLPKG----------L----------GL-----LESDHGLFNDPRTKPYVELYARD--QNEFFKALLELWRSL 306 (343)
Q Consensus 254 FDn~Yy~~l~~~----------~----------gl-----L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km 306 (343)
+.|.||.||+.- + |- -..|..+-+++..|.+.+-||.| +++|.+||+.||.|.
T Consensus 642 LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kV 721 (730)
T COG0376 642 LTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKV 721 (730)
T ss_pred ccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 667777766642 1 21 24788888889999999999975 899999999999999
Q ss_pred HhCC
Q 039892 307 VFMV 310 (343)
Q Consensus 307 ~~ig 310 (343)
.++.
T Consensus 722 Mn~D 725 (730)
T COG0376 722 MNLD 725 (730)
T ss_pred hccc
Confidence 8875
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=53.83 E-value=13 Score=29.33 Aligned_cols=30 Identities=7% Similarity=0.089 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCchhhcccceec
Q 039892 294 EFFKALLELWRSLVFMVLRPEEEERLGAGVML 325 (343)
Q Consensus 294 ~F~~~Fa~Am~Km~~igv~tg~~~r~~~~~~~ 325 (343)
...++|..||.||+.||.. ...-.+|+-||
T Consensus 2 ~m~~~F~~am~KlavLG~d--~~~LiDCSdVI 31 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD--RSDLIDCSDVI 31 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS---GGGSEE-GGGS
T ss_pred hHHHHHHHHHHHHHHhcCC--hhhcccchhhc
Confidence 3568999999999999874 23345677666
No 20
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.59 E-value=73 Score=24.61 Aligned_cols=29 Identities=10% Similarity=0.253 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHhhhccc
Q 039892 41 IMQDTITNKQITSPTTAAATLRLFFHDCL 69 (343)
Q Consensus 41 iV~~~v~~~~~~d~~~a~~lLRL~FHDcf 69 (343)
|.|+.+.+.++++|.+-+..||+.+---+
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 68999999999999999999999887653
No 21
>PRK01844 hypothetical protein; Provisional
Probab=34.28 E-value=85 Score=24.38 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHhhhccc
Q 039892 41 IMQDTITNKQITSPTTAAATLRLFFHDCL 69 (343)
Q Consensus 41 iV~~~v~~~~~~d~~~a~~lLRL~FHDcf 69 (343)
+-|+.+++.++++|.+-...||..|---+
T Consensus 24 ~ark~~~k~lk~NPpine~mir~Mm~QMG 52 (72)
T PRK01844 24 IARKYMMNYLQKNPPINEQMLKMMMMQMG 52 (72)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 46899999999999999999999886553
No 22
>PRK00523 hypothetical protein; Provisional
Probab=29.50 E-value=1.1e+02 Score=23.71 Aligned_cols=29 Identities=7% Similarity=0.198 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHhhhccc
Q 039892 41 IMQDTITNKQITSPTTAAATLRLFFHDCL 69 (343)
Q Consensus 41 iV~~~v~~~~~~d~~~a~~lLRL~FHDcf 69 (343)
+-|+.+++.++++|.+-...||..+--.+
T Consensus 25 iark~~~k~l~~NPpine~mir~M~~QMG 53 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENMIRAMYMQMG 53 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHHHHHHHHHhC
Confidence 46889999999999999999999886553
No 23
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=23.99 E-value=1.2e+02 Score=29.83 Aligned_cols=95 Identities=22% Similarity=0.256 Sum_probs=57.6
Q ss_pred CCCCcceeecCCCCCc-c--cc--CcccC--CCCCC-----chhhHHHHHHHHHHhhCC-----CCccHHHHHH--HhhH
Q 039892 71 NGCDSSILITSTPFNK-A--ER--DADIN--LSLPG-----DAFDVITRAKTALELQCP-----NTVSCSDILA--VATR 131 (343)
Q Consensus 71 ~GCDgSiLL~~~~~~~-~--E~--~~~~N--~~l~g-----~~~~vId~iK~~le~~cp-----~~VScADila--lAar 131 (343)
.|-||=++++++.... . |. -...| .||.| .++++|..+.+.++..+| |+-|+-|.+- +|+.
T Consensus 185 ~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA 264 (310)
T COG0167 185 AGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGA 264 (310)
T ss_pred cCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCC
Confidence 5899999988654211 1 11 11223 35655 478899999999887676 5557666654 3445
Q ss_pred hHHHhh-----CCCcccccCCccCCCCcccccccCCCCCCCCCHHHHHHHHHHCCCC-cccce
Q 039892 132 DLVTMV-----GGPYYNVYLGRKDVRVSKAADVEGNLPKPTMPMSQIIDVFAKRKFS-VQEMV 188 (343)
Q Consensus 132 ~AV~~~-----GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~-~~dlV 188 (343)
.+|+.. .||.+- ..=.++|.+...++|+. .+|+|
T Consensus 265 ~~vQv~Tal~~~Gp~i~-----------------------~~I~~~l~~~l~~~g~~si~d~i 304 (310)
T COG0167 265 SAVQVGTALIYKGPGIV-----------------------KEIIKGLARWLEEKGFESIQDII 304 (310)
T ss_pred chheeeeeeeeeCchHH-----------------------HHHHHHHHHHHHHcCCCCHHHHh
Confidence 555431 233210 01146678888899995 88887
No 24
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=23.57 E-value=59 Score=28.20 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHCCCCcccce-eeeccccccccc
Q 039892 168 MPMSQIIDVFAKRKFSVQEMV-ALSGAHTIGFSH 200 (343)
Q Consensus 168 ~~~~~l~~~F~~~Gl~~~dlV-aLsGaHTiG~ah 200 (343)
+++.+.+-.|+++||++.++= .|--+|-||+++
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 356667779999999999974 455899999876
No 25
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=21.94 E-value=51 Score=26.75 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=35.5
Q ss_pred ccCCCCCCHHHHHH--HhhCHHHHHHHHHHHHHHHHhCCCC-CCchhhcccceec
Q 039892 274 GLFNDPRTKPYVEL--YARDQNEFFKALLELWRSLVFMVLR-PEEEERLGAGVML 325 (343)
Q Consensus 274 ~L~~d~~t~~~V~~--yA~d~~~F~~~Fa~Am~Km~~igv~-tg~~~r~~~~~~~ 325 (343)
.+++|.+||..|+. -|.|.++..+.|-.||.- .++ +..+-|+.+.--|
T Consensus 35 kiLTdERTRRQvnNLRHATNSELLCEAFLHA~TG----QPLP~D~Dl~Kd~~d~i 85 (105)
T PRK05264 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFTG----QPLPDDEDLRKERSDEI 85 (105)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHHcC----CCCCChhhhhhcCcccc
Confidence 45689999999974 588999999999999863 233 3456666666555
No 26
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=21.50 E-value=53 Score=26.50 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=37.9
Q ss_pred ccCCCCCCHHHHHH--HhhCHHHHHHHHHHHHHHHHhCCCC-CCchhhcccceeccchhhh
Q 039892 274 GLFNDPRTKPYVEL--YARDQNEFFKALLELWRSLVFMVLR-PEEEERLGAGVMLLTESIK 331 (343)
Q Consensus 274 ~L~~d~~t~~~V~~--yA~d~~~F~~~Fa~Am~Km~~igv~-tg~~~r~~~~~~~~~~~~~ 331 (343)
.+++|.+||..|+. -|.|.++..+.|-.||.- .++ +..+-|+.+.-.| ++..|
T Consensus 34 kiLTdERTRRQvnnlRHATNSELLCEAFLHAfTG----QPLP~D~Dl~K~~~d~i-P~~ak 89 (103)
T cd00490 34 KILTDERTRRQVNNLRHATNSELLCEAFLHAFTG----QPLPDDADLRKERSDEI-PEAAK 89 (103)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhcC----CCCCChhhhhhcCcccc-cHHHH
Confidence 45689999999974 588999999999999863 233 3456666666655 54444
No 27
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=20.97 E-value=53 Score=26.27 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=16.9
Q ss_pred HhhCHHHHHHHHHHHHHHHHh
Q 039892 288 YARDQNEFFKALLELWRSLVF 308 (343)
Q Consensus 288 yA~d~~~F~~~Fa~Am~Km~~ 308 (343)
|-..|++||+.|+..+.|=+.
T Consensus 38 Y~~~QskFFe~~A~~~tkR~~ 58 (90)
T PLN00017 38 YNPLQSKFFETFAAPFTKRGL 58 (90)
T ss_pred CChHHHHHHHHHhhhhhHHHH
Confidence 666799999999998877443
No 28
>PTZ00411 transaldolase-like protein; Provisional
Probab=20.75 E-value=61 Score=32.27 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=29.4
Q ss_pred hhCCCcccccCCccCCCCcccccccCCCCCC---CCCHHHHHHHHHHCCCCc
Q 039892 136 MVGGPYYNVYLGRKDVRVSKAADVEGNLPKP---TMPMSQIIDVFAKRKFSV 184 (343)
Q Consensus 136 ~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p---~~~~~~l~~~F~~~Gl~~ 184 (343)
.+|-..+..+.||-+...-.........+.. -..+.++.+.|++.|+..
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 3577788999999965422111111111211 235778888999999864
Done!