Query 039893
Match_columns 68
No_of_seqs 108 out of 261
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 04:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qjl_A Metallothionein; metal- 97.9 7.5E-06 2.6E-10 42.7 2.3 20 47-66 8-27 (28)
2 2kak_A EC protein I/II; metall 95.7 0.005 1.7E-07 36.0 1.8 17 51-67 5-21 (53)
3 1t2y_A Metallothionein, MT; pr 93.3 0.047 1.6E-06 27.8 1.9 16 49-64 8-23 (26)
4 1m0j_A Metallothionein MT_NC; 91.1 0.12 4E-06 26.7 1.8 17 50-66 9-25 (28)
5 4mt2_A Metallothionein isoform 52.3 8.6 0.00029 22.8 2.0 17 50-66 12-28 (62)
6 3ny3_A E3 ubiquitin-protein li 11.3 68 0.0023 18.8 0.6 9 6-14 55-63 (75)
7 1pqr_A Alpha-A-conotoxin EIVA; 11.2 1.1E+02 0.0038 15.5 1.3 11 56-66 7-17 (31)
8 3nis_A E3 ubiquitin-protein li 9.4 77 0.0026 18.9 0.3 12 5-16 60-71 (82)
9 2kgu_A Purotoxin-1; P2X recept 9.2 62 0.0021 16.9 -0.2 10 51-60 20-32 (35)
10 1p1p_A AA-conotoxin PIVA; neur 8.6 1.7E+02 0.0058 14.3 1.3 11 56-66 7-17 (26)
No 1
>1qjl_A Metallothionein; metal-binding, detoxification, radical scavenger; NMR {Strongylocentrotus purpuratus} SCOP: g.46.1.1
Probab=97.87 E-value=7.5e-06 Score=42.68 Aligned_cols=20 Identities=35% Similarity=1.167 Sum_probs=16.8
Q ss_pred cCCCCCCCCCCccCCCCCCC
Q 039893 47 EAEGNCKCGPTCACVNCTCG 66 (68)
Q Consensus 47 E~~ggCKCG~nC~C~pC~C~ 66 (68)
+...+||||++|+|++|+|+
T Consensus 8 ~cg~~CkCgs~C~C~~C~C~ 27 (28)
T 1qjl_A 8 KCANGCKCGSGCSCTEGNCA 27 (28)
T ss_dssp CCCTTCCTTSCCCCBTTBCC
T ss_pred ccCCCCccCCCcccCCcccc
Confidence 33347999999999999996
No 2
>2kak_A EC protein I/II; metallothionein, solution structure, wheat EC-1, Zn binding, metal-binding, metal-thiolate cluster, zinc; NMR {Triticum aestivum}
Probab=95.65 E-value=0.005 Score=36.02 Aligned_cols=17 Identities=47% Similarity=1.538 Sum_probs=15.7
Q ss_pred CCCCCCCccCCCCCCCC
Q 039893 51 NCKCGPTCACVNCTCGS 67 (68)
Q Consensus 51 gCKCG~nC~C~pC~C~~ 67 (68)
.|.||-.|.|+||+|.+
T Consensus 5 tC~CGEHCgCnPCtC~k 21 (53)
T 2kak_A 5 TCGCGEHCGCNPCACGR 21 (53)
T ss_dssp CBTTTBCCTTSCCTTCC
T ss_pred cccCCCcccccCccCCC
Confidence 69999999999999975
No 3
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=93.28 E-value=0.047 Score=27.83 Aligned_cols=16 Identities=44% Similarity=1.421 Sum_probs=13.3
Q ss_pred CCCCCCCCCccCCCCC
Q 039893 49 EGNCKCGPTCACVNCT 64 (68)
Q Consensus 49 ~ggCKCG~nC~C~pC~ 64 (68)
.+.|.||++|+|..|-
T Consensus 8 tgtC~Cg~~CsC~gC~ 23 (26)
T 1t2y_A 8 ASSCNCGSGCSCSNCG 23 (26)
T ss_dssp TTTCCCSSSCCSSTTS
T ss_pred CccccCCCCccccCcc
Confidence 3579999999999874
No 4
>1m0j_A Metallothionein MT_NC; cadmium thiolate-cluster, metal binding protein; NMR {Notothenia coriiceps} SCOP: g.46.1.1
Probab=91.12 E-value=0.12 Score=26.70 Aligned_cols=17 Identities=53% Similarity=1.726 Sum_probs=15.1
Q ss_pred CCCCCCCCccCCCCCCC
Q 039893 50 GNCKCGPTCACVNCTCG 66 (68)
Q Consensus 50 ggCKCG~nC~C~pC~C~ 66 (68)
+.|.|+++|+|..|.|.
T Consensus 9 gsC~C~~sCkC~~C~Ct 25 (28)
T 1m0j_A 9 GTCNCGGSCTCTNCSCK 25 (28)
T ss_dssp SSCCCSSSCCSSSCCCT
T ss_pred CcccCCCccccCCccCc
Confidence 46999999999999985
No 5
>4mt2_A Metallothionein isoform II; 2.00A {Rattus rattus} SCOP: g.46.1.1 PDB: 2mrt_A 1mrt_A 1mhu_A 1dfs_A 2mhu_A 1dft_A 2mrb_A
Probab=52.32 E-value=8.6 Score=22.79 Aligned_cols=17 Identities=41% Similarity=1.460 Sum_probs=14.4
Q ss_pred CCCCCCCCccCCCCCCC
Q 039893 50 GNCKCGPTCACVNCTCG 66 (68)
Q Consensus 50 ggCKCG~nC~C~pC~C~ 66 (68)
+.|.|+++|+|..|.|.
T Consensus 12 gsC~C~~sCkCk~CkCt 28 (62)
T 4mt2_A 12 GSCSCAGSCKCKQCKCT 28 (62)
T ss_dssp SCCCCTTCSCCSSCCCT
T ss_pred CcccCCCccccCCcccC
Confidence 46999999999998873
No 6
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=11.29 E-value=68 Score=18.76 Aligned_cols=9 Identities=56% Similarity=1.346 Sum_probs=7.0
Q ss_pred CCCCCCCCC
Q 039893 6 GNCDCADRS 14 (68)
Q Consensus 6 GnC~Cg~~c 14 (68)
|.|||||..
T Consensus 55 G~CDCGD~e 63 (75)
T 3ny3_A 55 GFCDCGDTE 63 (75)
T ss_dssp BBCCTTCTT
T ss_pred CEecCcCHH
Confidence 489999864
No 7
>1pqr_A Alpha-A-conotoxin EIVA; alpha-helix, two disulfide bonds, C-TERM amidation; HET: HYP; NMR {Synthetic} SCOP: j.30.1.3
Probab=11.16 E-value=1.1e+02 Score=15.54 Aligned_cols=11 Identities=45% Similarity=1.222 Sum_probs=8.5
Q ss_pred CCccCCCCCCC
Q 039893 56 PTCACVNCTCG 66 (68)
Q Consensus 56 ~nC~C~pC~C~ 66 (68)
+|=.|-||.||
T Consensus 7 pnaachpc~ck 17 (31)
T 1pqr_A 7 PNAACHPCGCK 17 (31)
T ss_dssp SSSSCCTTCSS
T ss_pred CCccccccccc
Confidence 46678899887
No 8
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=9.38 E-value=77 Score=18.91 Aligned_cols=12 Identities=42% Similarity=1.005 Sum_probs=8.4
Q ss_pred CCCCCCCCCCcc
Q 039893 5 CGNCDCADRSQC 16 (68)
Q Consensus 5 CGnC~Cg~~c~C 16 (68)
.|-|||||...-
T Consensus 60 gG~CDCGD~eaw 71 (82)
T 3nis_A 60 SGICDCGDEEAW 71 (82)
T ss_dssp EEBCCTTCGGGB
T ss_pred CcEecCCCHHHh
Confidence 358999986543
No 9
>2kgu_A Purotoxin-1; P2X receptor; NMR {Geolycosa}
Probab=9.17 E-value=62 Score=16.93 Aligned_cols=10 Identities=60% Similarity=1.800 Sum_probs=6.1
Q ss_pred CCCC---CCCccC
Q 039893 51 NCKC---GPTCAC 60 (68)
Q Consensus 51 gCKC---G~nC~C 60 (68)
.|+| |+||.|
T Consensus 20 ~C~Cs~~g~nC~C 32 (35)
T 2kgu_A 20 KCKCNASGYNCVC 32 (35)
T ss_dssp EEECCSSSCCCEE
T ss_pred CeEEeccCCeeEE
Confidence 4666 666655
No 10
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=8.58 E-value=1.7e+02 Score=14.32 Aligned_cols=11 Identities=45% Similarity=1.301 Sum_probs=7.9
Q ss_pred CCccCCCCCCC
Q 039893 56 PTCACVNCTCG 66 (68)
Q Consensus 56 ~nC~C~pC~C~ 66 (68)
+|=.|-||.|+
T Consensus 7 pnaachpc~c~ 17 (26)
T 1p1p_A 7 PNAACHPCSCK 17 (26)
T ss_dssp CCSSCCTTTST
T ss_pred CCccccccccC
Confidence 46668888886
Done!