BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039894
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80ZG5|SLU7_RAT Pre-mRNA-splicing factor SLU7 OS=Rattus norvegicus GN=Slu7 PE=2
SV=2
Length = 586
Score = 37.0 bits (84), Expect = 0.054, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 32 EEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKKRTSYKTLRLTCD 79
EE N + DH ED+D D + D G++ K+R + + LR+ D
Sbjct: 223 EEPNSQMEKDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIRED 270
>sp|Q8BHJ9|SLU7_MOUSE Pre-mRNA-splicing factor SLU7 OS=Mus musculus GN=Slu7 PE=1 SV=1
Length = 585
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 32 EEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKKRTSYKTLRLTCD 79
EE N + DH ED+D D + D G++ K+R + + LR+ D
Sbjct: 223 EEPNSQMEKDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIRED 270
>sp|Q4R4P2|SLU7_MACFA Pre-mRNA-splicing factor SLU7 OS=Macaca fascicularis GN=SLU7 PE=2
SV=1
Length = 586
Score = 37.0 bits (84), Expect = 0.058, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 32 EEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKKRTSYKTLRLTCD 79
EE N + DH ED+D D + D G++ K+R + + LR+ D
Sbjct: 223 EEPNSQTEKDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIRED 270
>sp|O95391|SLU7_HUMAN Pre-mRNA-splicing factor SLU7 OS=Homo sapiens GN=SLU7 PE=1 SV=2
Length = 586
Score = 36.6 bits (83), Expect = 0.059, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 32 EEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKKRTSYKTLRLTCD 79
EE N + DH ED+D D + D G++ K+R + + LR+ D
Sbjct: 223 EEPNSQMEKDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIRED 270
>sp|Q3ZBE5|SLU7_BOVIN Pre-mRNA-splicing factor SLU7 OS=Bos taurus GN=SLU7 PE=2 SV=2
Length = 586
Score = 36.6 bits (83), Expect = 0.062, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 32 EEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKKRTSYKTLRLTCD 79
EE N + DH ED+D D + D G++ K+R + + LR+ D
Sbjct: 223 EEPNSQTEKDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIRED 270
>sp|Q9VYN8|TENA_DROME Teneurin-a OS=Drosophila melanogaster GN=Ten-a PE=1 SV=2
Length = 3004
Score = 36.2 bits (82), Expect = 0.095, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 113 CGKKCKYNEICCNGKCV-NPSFNRRHCG--GCNNSCSNGEFCVL 153
C +C + C NG CV + +N RHC GC N CS C L
Sbjct: 757 CDSRCSEHGQCKNGTCVCSQGWNGRHCTLPGCENGCSRHGQCTL 800
>sp|Q1RKH7|RPOD_RICBR RNA polymerase sigma factor RpoD OS=Rickettsia bellii (strain
RML369-C) GN=rpoD PE=3 SV=1
Length = 641
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 16 LVLHNVVSATTTVVHVEEENQ---NHDADHYEEDQDHDSFEDQSISS 59
++L +++ + ++H +E ++ +H++DH EE+QDHD +++I S
Sbjct: 163 MLLRDLIDLESNMMHDDETSESEDDHNSDHEEEEQDHDHDHEENILS 209
>sp|P22105|TENX_HUMAN Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=3
Length = 4289
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 109 NCG--KCGKKCKYNEICCNGKCV-NPSFNRRHCG--GCNNSCSNGEFCVLGLC 156
+CG C + C C NG+CV NP + CG C CS C G C
Sbjct: 274 DCGMRSCPRGCSQRGRCENGRCVCNPGYTGEDCGVRSCPRGCSQRGRCKDGRC 326
>sp|Q9H013|ADA19_HUMAN Disintegrin and metalloproteinase domain-containing protein 19
OS=Homo sapiens GN=ADAM19 PE=1 SV=3
Length = 955
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 114 GKKCKYNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCN 157
G KC YN IC G+C N SF GC C NG G+CN
Sbjct: 629 GTKCGYNHICFEGQCRNTSFFETE--GCGKKC-NGH----GVCN 665
>sp|Q3KQD1|SLU7_XENLA Pre-mRNA-splicing factor SLU7 OS=Xenopus laevis GN=slu7 PE=2 SV=2
Length = 580
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 32 EEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKKRTSYKTLRLTCD 79
+E+N + D ED+D D + D G++ K+R + + LR+ D
Sbjct: 220 DEQNSQTEKDRNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIRED 267
>sp|Q80YX1|TENA_MOUSE Tenascin OS=Mus musculus GN=Tnc PE=1 SV=1
Length = 2110
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 22/103 (21%)
Query: 75 RLTCDKFPRICYFEGSPGSSCCKKKCVELLKDR----------------MNCG--KCGKK 116
R C++ +C EG G+ C +K+C R +CG +C
Sbjct: 353 RGQCEEGQCVCN-EGFAGADCSEKRCPADCHHRGRCLNGQCECDDGFTGADCGDLQCPNG 411
Query: 117 CKYNEICCNGKCV-NPSFNRRHCGG--CNNSCSNGEFCVLGLC 156
C + C NG+CV + + C C N C N CV G C
Sbjct: 412 CSGHGRCVNGQCVCDEGYTGEDCSQRRCPNDCHNRGLCVQGKC 454
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 112 KCGKKCKYNEICCNGKCV-NPSFNRRHCG--GCNNSCSNGEFCVLGLC 156
+C C C +G+C+ + F CG C N CSN CV G C
Sbjct: 562 RCPSDCHGQGRCEDGQCICHEGFTGLDCGQRSCPNDCSNQGQCVSGRC 609
>sp|G5EGQ6|TEN1_CAEEL Teneurin-1 OS=Caenorhabditis elegans GN=ten-1 PE=1 SV=1
Length = 2684
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 87 FEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNPSFNRRHCG--GCNNS 144
++G GS+C KKC +DR C G CK C +G +N +C GC N
Sbjct: 675 WKGWRGSNCTDKKCAIGCEDRGKCASDG-SCK----CSSG------WNGENCAIDGCPNQ 723
Query: 145 CSNGEFC 151
CS C
Sbjct: 724 CSGKGEC 730
>sp|Q4FLL6|EFG_PELUB Elongation factor G OS=Pelagibacter ubique (strain HTCC1062)
GN=fusA PE=3 SV=1
Length = 692
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 80 KFPRICYFEGSPGSSCCKKKCVELLKDRMNC 110
K PRIC+ + +CVE++KDR+ C
Sbjct: 127 KVPRICFVNKLDRTGADFYRCVEMIKDRLGC 157
>sp|Q1LKN9|UVRC_RALME UvrABC system protein C OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=uvrC PE=3 SV=1
Length = 673
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 55 QSISSGRSLLQKKRTSYKTLRLTCDKFPRICYFEGS 90
++++ ++L + SY LRLT KFPR+ Y+ G+
Sbjct: 109 KALAPRYNILFRDDKSYPFLRLTGHKFPRMAYYRGA 144
>sp|Q5ZIG2|SLU7_CHICK Pre-mRNA-splicing factor SLU7 OS=Gallus gallus GN=SLU7 PE=2 SV=1
Length = 564
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 39 DADHYEEDQDHDSFEDQSISSGRSLLQKKRTSYKTLRLTCD 79
+ DH ED+D D + D G++ K+R + + LR+ D
Sbjct: 211 ERDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIRED 251
>sp|A4JCS0|UVRC_BURVG UvrABC system protein C OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=uvrC PE=3 SV=1
Length = 683
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 55 QSISSGRSLLQKKRTSYKTLRLTCDKFPRICYFEGS 90
++++ ++L + SY L+LT +FPR+ Y+ GS
Sbjct: 92 KALAPRYNILFRDDKSYPYLKLTAHRFPRMAYYRGS 127
>sp|Q39I64|UVRC_BURS3 UvrABC system protein C OS=Burkholderia sp. (strain 383) GN=uvrC
PE=3 SV=1
Length = 677
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 55 QSISSGRSLLQKKRTSYKTLRLTCDKFPRICYFEGS 90
++++ ++L + SY L+LT +FPR+ Y+ GS
Sbjct: 92 KALAPRYNILFRDDKSYPYLKLTAHRFPRMAYYRGS 127
>sp|B2SZU5|UVRC_BURPP UvrABC system protein C OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=uvrC PE=3 SV=1
Length = 731
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 3 FTKTLLILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSGRS 62
FTKTLL +A+++ + TTV E E + + ++++ +
Sbjct: 52 FTKTLLSPRIAMMVT--RIARIETTVTRSEAEALLLENNLI-----------KALAPRYN 98
Query: 63 LLQKKRTSYKTLRLTCDKFPRICYFEGS 90
+L + SY L+LT KFPR+ Y+ G+
Sbjct: 99 ILFRDDKSYPYLKLTGHKFPRMAYYRGA 126
>sp|Q0BGZ5|UVRC_BURCM UvrABC system protein C OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=uvrC PE=3 SV=1
Length = 684
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 55 QSISSGRSLLQKKRTSYKTLRLTCDKFPRICYFEGS 90
++++ ++L + SY L+LT +FPR+ Y+ GS
Sbjct: 92 KALAPRYNILFRDDKSYPYLKLTAHRFPRMAYYRGS 127
>sp|A0K5W8|UVRC_BURCH UvrABC system protein C OS=Burkholderia cenocepacia (strain HI2424)
GN=uvrC PE=3 SV=1
Length = 681
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 55 QSISSGRSLLQKKRTSYKTLRLTCDKFPRICYFEGS 90
++++ ++L + SY L+LT +FPR+ Y+ GS
Sbjct: 92 KALAPRYNILFRDDKSYPYLKLTAHRFPRMAYYRGS 127
>sp|B1JYC2|UVRC_BURCC UvrABC system protein C OS=Burkholderia cenocepacia (strain MC0-3)
GN=uvrC PE=3 SV=1
Length = 682
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 55 QSISSGRSLLQKKRTSYKTLRLTCDKFPRICYFEGS 90
++++ ++L + SY L+LT +FPR+ Y+ GS
Sbjct: 92 KALAPRYNILFRDDKSYPYLKLTAHRFPRMAYYRGS 127
>sp|Q1BXT2|UVRC_BURCA UvrABC system protein C OS=Burkholderia cenocepacia (strain AU
1054) GN=uvrC PE=3 SV=1
Length = 681
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 55 QSISSGRSLLQKKRTSYKTLRLTCDKFPRICYFEGS 90
++++ ++L + SY L+LT +FPR+ Y+ GS
Sbjct: 92 KALAPRYNILFRDDKSYPYLKLTAHRFPRMAYYRGS 127
>sp|B1YVN3|UVRC_BURA4 UvrABC system protein C OS=Burkholderia ambifaria (strain MC40-6)
GN=uvrC PE=3 SV=1
Length = 684
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 55 QSISSGRSLLQKKRTSYKTLRLTCDKFPRICYFEGS 90
++++ ++L + SY L+LT +FPR+ Y+ GS
Sbjct: 92 KALAPRYNILFRDDKSYPYLKLTAHRFPRMAYYRGS 127
>sp|P24821|TENA_HUMAN Tenascin OS=Homo sapiens GN=TNC PE=1 SV=3
Length = 2201
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 21/90 (23%)
Query: 88 EGSPGSSCCKKKCVELLKDR----------------MNCG--KCGKKCKYNEICCNGKCV 129
EG G C +K+C +R +CG KC C + C NG+CV
Sbjct: 365 EGFAGVDCSEKRCPADCHNRGRCVDGRCECDDGFTGADCGELKCPNGCSGHGRCVNGQCV 424
Query: 130 -NPSFNRRHCGG--CNNSCSNGEFCVLGLC 156
+ + C C N C + CV G C
Sbjct: 425 CDEGYTGEDCSQLRCPNDCHSRGRCVEGKC 454
>sp|Q5U3F2|SLU7_DANRE Pre-mRNA-splicing factor SLU7 OS=Danio rerio GN=slu7 PE=2 SV=1
Length = 571
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 41 DHYEEDQDHDSFEDQSISSGRSLLQKKRTSYKTLRLTCD 79
DH ED+D D + D G++ K+R + + LR+ D
Sbjct: 217 DHSSEDEDEDKYVDDFDMPGQNFDSKRRITVRNLRIRED 255
>sp|Q00546|TENR_CHICK Tenascin-R OS=Gallus gallus GN=TNR PE=1 SV=1
Length = 1353
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 112 KCGKKCKYNEICCNGKCV-NPSFNRRHCG--GCNNSCSNGEFCVLGLC 156
+C + C C NG CV + CG C N+CS C GLC
Sbjct: 264 RCPRDCSGRGHCDNGTCVCAEGYAGEDCGWLRCPNACSGRGVCQDGLC 311
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,824,294
Number of Sequences: 539616
Number of extensions: 2591261
Number of successful extensions: 11814
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 11445
Number of HSP's gapped (non-prelim): 451
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)