Query 039894
Match_columns 159
No_of_seqs 143 out of 216
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04885 Stig1: Stigma-specifi 100.0 2E-37 4.4E-42 242.5 6.2 92 58-159 43-136 (136)
2 PF04885 Stig1: Stigma-specifi 99.5 1.2E-13 2.6E-18 108.7 6.6 47 84-130 89-135 (136)
3 PF07172 GRP: Glycine rich pro 90.1 0.41 8.9E-06 35.7 3.5 18 6-23 3-20 (95)
4 PF07172 GRP: Glycine rich pro 86.9 0.92 2E-05 33.8 3.6 24 3-26 3-27 (95)
5 PF02950 Conotoxin: Conotoxin; 86.9 0.4 8.8E-06 32.7 1.6 22 77-101 49-70 (75)
6 PF15240 Pro-rich: Proline-ric 82.0 1.2 2.7E-05 37.0 2.7 21 6-26 1-21 (179)
7 PF07790 DUF1628: Protein of u 52.4 13 0.00027 25.8 2.2 18 7-24 8-25 (80)
8 PF15284 PAGK: Phage-encoded v 51.0 15 0.00033 25.9 2.4 24 4-27 2-25 (61)
9 PF12606 RELT: Tumour necrosis 50.5 34 0.00073 23.1 3.9 22 2-23 3-24 (50)
10 PF05984 Cytomega_UL20A: Cytom 49.6 26 0.00057 26.6 3.6 35 4-39 3-38 (100)
11 PHA03093 EEV glycoprotein; Pro 44.5 34 0.00074 28.8 3.9 24 2-25 37-60 (185)
12 PF06116 RinB: Transcriptional 43.1 21 0.00045 24.7 2.0 15 1-15 1-15 (53)
13 PF05781 MRVI1: MRVI1 protein; 43.0 21 0.00045 34.4 2.7 26 2-27 480-505 (538)
14 PF06357 Omega-toxin: Omega-at 42.1 11 0.00024 24.2 0.5 17 114-130 8-24 (37)
15 COG5510 Predicted small secret 40.5 33 0.00072 22.9 2.6 23 6-28 3-25 (44)
16 COG5353 Uncharacterized protei 40.3 26 0.00057 28.9 2.6 32 3-35 8-41 (161)
17 TIGR02163 napH_ ferredoxin-typ 39.6 13 0.00029 31.3 0.8 40 108-148 204-249 (255)
18 PF12798 Fer4_3: 4Fe-4S bindin 39.2 8 0.00017 20.0 -0.4 12 137-148 3-14 (15)
19 PHA03093 EEV glycoprotein; Pro 38.9 35 0.00076 28.8 3.2 44 4-47 43-86 (185)
20 PF04706 Dickkopf_N: Dickkopf 37.9 42 0.0009 22.6 2.9 30 127-157 22-51 (52)
21 PF03823 Neurokinin_B: Neuroki 37.4 43 0.00094 23.5 2.9 20 7-26 2-21 (59)
22 PF07423 DUF1510: Protein of u 35.3 39 0.00084 28.8 2.9 22 2-23 15-36 (217)
23 PF11337 DUF3139: Protein of u 35.0 38 0.00082 24.0 2.4 10 7-16 5-14 (85)
24 TIGR01944 rnfB electron transp 34.8 42 0.00091 26.5 2.9 40 109-149 117-159 (165)
25 PHA02673 ORF109 EEV glycoprote 34.7 46 0.00099 27.5 3.2 23 3-25 35-57 (161)
26 PF13978 DUF4223: Protein of u 34.1 38 0.00082 23.5 2.2 27 9-37 4-30 (56)
27 PF11912 DUF3430: Protein of u 34.1 26 0.00057 27.7 1.6 12 6-17 1-12 (212)
28 PRK09477 napH quinol dehydroge 33.8 25 0.00055 29.8 1.6 41 108-148 211-257 (271)
29 PF01683 EB: EB module; Inter 32.5 64 0.0014 20.4 3.0 40 117-157 1-40 (52)
30 PF09125 COX2-transmemb: Cytoc 32.2 67 0.0015 20.8 3.0 20 3-22 12-31 (38)
31 PF08087 Toxin_18: Conotoxin O 31.7 21 0.00045 22.1 0.6 17 114-130 7-23 (31)
32 PF07835 COX4_pro_2: Bacterial 30.8 41 0.00088 21.9 1.8 19 3-21 24-42 (44)
33 smart00289 WR1 Worm-specific r 29.6 50 0.0011 19.4 2.0 26 130-156 8-36 (38)
34 PF09065 Haemadin: Haemadin; 29.3 17 0.00037 21.7 -0.1 15 115-129 6-20 (27)
35 PF04060 FeS: Putative Fe-S cl 29.2 23 0.00049 21.8 0.4 10 107-116 4-13 (35)
36 PF12869 tRNA_anti-like: tRNA_ 28.4 19 0.00042 26.8 0.0 20 3-22 4-23 (144)
37 TIGR02537 arch_flag_Nterm arch 26.5 71 0.0015 18.8 2.2 14 8-21 10-23 (26)
38 PF14055 NVEALA: NVEALA protei 25.4 41 0.00088 22.9 1.2 10 6-15 4-13 (65)
39 PF01307 Plant_vir_prot: Plant 25.3 62 0.0013 24.5 2.3 16 7-22 9-24 (104)
40 COG4478 Predicted membrane pro 24.8 80 0.0017 27.1 3.0 21 4-24 3-23 (210)
41 PF00672 HAMP: HAMP domain; I 24.7 1.9E+02 0.0041 18.3 4.3 32 6-37 5-36 (70)
42 TIGR02494 PFLE_PFLC glycyl-rad 24.6 33 0.00072 28.6 0.7 41 108-149 51-98 (295)
43 PRK12750 cpxP periplasmic repr 24.4 81 0.0017 25.5 2.9 20 1-20 1-20 (170)
44 PF01599 Ribosomal_S27: Riboso 24.4 37 0.00081 22.7 0.8 15 101-115 32-46 (47)
45 TIGR02209 ftsL_broad cell divi 24.1 60 0.0013 22.2 1.9 9 5-13 3-11 (85)
46 TIGR03379 glycerol3P_GlpC glyc 24.1 63 0.0014 28.3 2.4 41 108-148 8-67 (397)
47 PF09889 DUF2116: Uncharacteri 23.8 1E+02 0.0022 21.3 3.0 16 5-20 37-52 (59)
48 PRK10540 lipoprotein; Provisio 23.8 1E+02 0.0022 22.1 3.0 18 9-26 8-25 (72)
49 smart00608 ACR ADAM Cysteine-R 23.7 51 0.0011 25.6 1.6 18 114-131 120-137 (137)
50 PF00037 Fer4: 4Fe-4S binding 22.4 17 0.00037 20.3 -1.0 12 137-148 10-21 (24)
51 TIGR03659 IsdE heme ABC transp 22.2 96 0.0021 25.7 3.0 21 4-24 2-22 (289)
52 PF08496 Peptidase_S49_N: Pept 21.8 1E+02 0.0022 24.8 3.0 24 3-26 10-33 (155)
53 PRK14872 rod shape-determining 21.7 68 0.0015 29.1 2.2 25 4-28 8-32 (337)
54 PRK14494 putative molybdopteri 21.7 40 0.00086 28.5 0.7 15 104-118 147-161 (229)
55 PF09610 Myco_arth_vir_N: Myco 21.6 71 0.0015 20.1 1.6 19 8-26 10-28 (33)
56 COG4744 Uncharacterized conser 21.5 72 0.0016 25.3 2.0 13 21-33 52-64 (121)
57 PF08116 Toxin_29: PhTx neurot 21.5 48 0.001 20.5 0.8 17 114-130 7-23 (31)
58 PRK13791 lysozyme inhibitor; P 21.2 80 0.0017 24.3 2.2 17 4-20 2-18 (113)
59 KOG3653 Transforming growth fa 21.1 1.7E+02 0.0037 28.4 4.7 14 50-63 211-224 (534)
60 COG1998 RPS31 Ribosomal protei 21.0 35 0.00075 23.4 0.2 12 104-115 34-45 (51)
61 PF07403 DUF1505: Protein of u 21.0 60 0.0013 25.4 1.5 19 8-26 3-21 (114)
62 PRK06273 ferredoxin; Provision 20.5 29 0.00064 27.9 -0.3 12 137-148 95-106 (165)
63 PF14608 zf-CCCH_2: Zinc finge 20.2 73 0.0016 17.1 1.3 14 145-158 2-16 (19)
64 PF01917 Arch_flagellin: Archa 20.2 88 0.0019 24.7 2.3 13 8-20 8-20 (190)
No 1
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=100.00 E-value=2e-37 Score=242.47 Aligned_cols=92 Identities=50% Similarity=1.195 Sum_probs=88.4
Q ss_pred ccCccccccccccCCccccccccccccccCCc--cccccccccceeccccccCcccccCCCCCCCCcccCCcccCCCcCC
Q 039894 58 SSGRSLLQKKRTSYKTLRLTCDKFPRICYFEG--SPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNPSFNR 135 (159)
Q Consensus 58 ~~sRfLa~~~~~~~~~~~~~C~k~~~IC~~~~--~~G~~CC~g~Cvdl~tD~~NCG~Cg~~C~~g~~CC~G~Cvdl~tD~ 135 (159)
+.+|||++ ++|+++|+||..++ ++|+.||+++|||+.+|++|||+||++|++|++||+|+|||+.+|+
T Consensus 43 ~~~~~~~~----------~~C~~~~~iC~~~~~~~~~~~CC~~~Cvdv~~d~~nCG~Cg~~C~~g~~cC~G~Cvd~~~d~ 112 (136)
T PF04885_consen 43 RPSRFLAH----------DTCNKDPWICSAKGKCSPGPTCCNNKCVDVSSDRNNCGACGNKCPYGQTCCGGQCVDLNSDP 112 (136)
T ss_pred Cccccccc----------cccCCCchhhcCCCCCCCCCcccCCcCCccCCCccccHhhcCCCCCCceecCCEeECCCCCc
Confidence 67777755 79999999999998 9999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCccCCceecCC
Q 039894 136 RHCGGCNNSCSNGEFCVLGLCNYA 159 (159)
Q Consensus 136 ~nCG~Cg~~C~~G~~C~~G~C~YA 159 (159)
+|||+||++|+.|+.|++|+|.||
T Consensus 113 ~~CG~Cg~~C~~G~~C~~G~C~ya 136 (136)
T PF04885_consen 113 RHCGACGNKCPPGQKCVYGMCGYA 136 (136)
T ss_pred cccCCCCCcCCCcCCcCCeECCCC
Confidence 999999999999999999999998
No 2
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=99.46 E-value=1.2e-13 Score=108.65 Aligned_cols=47 Identities=36% Similarity=0.868 Sum_probs=45.0
Q ss_pred cccCCccccccccccceeccccccCcccccCCCCCCCCcccCCcccC
Q 039894 84 ICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVN 130 (159)
Q Consensus 84 IC~~~~~~G~~CC~g~Cvdl~tD~~NCG~Cg~~C~~g~~CC~G~Cvd 130 (159)
.|..++++|++||+|.|||+.+|+.|||+||++|+.|+.|-+|+|.+
T Consensus 89 ~Cg~~C~~g~~cC~G~Cvd~~~d~~~CG~Cg~~C~~G~~C~~G~C~y 135 (136)
T PF04885_consen 89 ACGNKCPYGQTCCGGQCVDLNSDPRHCGACGNKCPPGQKCVYGMCGY 135 (136)
T ss_pred hhcCCCCCCceecCCEeECCCCCccccCCCCCcCCCcCCcCCeECCC
Confidence 68888999999999999999999999999999999999999999975
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=90.08 E-value=0.41 Score=35.69 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 039894 6 TLLILLLAIILVLHNVVS 23 (159)
Q Consensus 6 ~~~i~~la~~~~l~~~ls 23 (159)
.|.+|||+++||+.+.+|
T Consensus 3 SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344555555555444443
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=86.94 E-value=0.92 Score=33.81 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=17.6
Q ss_pred hHH-HHHHHHHHHHHHHHHHhhccc
Q 039894 3 FTK-TLLILLLAIILVLHNVVSATT 26 (159)
Q Consensus 3 ~~~-~~~i~~la~~~~l~~~ls~~~ 26 (159)
-|+ +++.++|||+|.++...|+..
T Consensus 3 SK~~llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 344 455577889999998888865
No 5
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=86.85 E-value=0.4 Score=32.69 Aligned_cols=22 Identities=27% Similarity=0.717 Sum_probs=13.6
Q ss_pred ccccccccccCCcccccccccccee
Q 039894 77 TCDKFPRICYFEGSPGSSCCKKKCV 101 (159)
Q Consensus 77 ~C~k~~~IC~~~~~~G~~CC~g~Cv 101 (159)
.|......| ...+..||.+.|.
T Consensus 49 ~C~~~g~~C---~~~~~~CC~~~C~ 70 (75)
T PF02950_consen 49 RCTPPGSYC---CKRNSECCSGSCN 70 (75)
T ss_dssp -EB-TTSB----BTTTTCBSSSCEE
T ss_pred ccCCCCCcC---CCCCCCCCCCccC
Confidence 466666677 2467789998886
No 6
>PF15240 Pro-rich: Proline-rich
Probab=82.03 E-value=1.2 Score=37.03 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 039894 6 TLLILLLAIILVLHNVVSATT 26 (159)
Q Consensus 6 ~~~i~~la~~~~l~~~ls~~~ 26 (159)
|++|||.|.||||+.+-+.-.
T Consensus 1 MLlVLLSvALLALSSAQ~~dE 21 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDE 21 (179)
T ss_pred ChhHHHHHHHHHhhhcccccc
Confidence 678888888999887766544
No 7
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=52.35 E-value=13 Score=25.81 Aligned_cols=18 Identities=50% Similarity=0.656 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 039894 7 LLILLLAIILVLHNVVSA 24 (159)
Q Consensus 7 ~~i~~la~~~~l~~~ls~ 24 (159)
-.++||||++.|+.++.+
T Consensus 8 GviLliaitVilaavv~~ 25 (80)
T PF07790_consen 8 GVILLIAITVILAAVVGA 25 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356777777777765544
No 8
>PF15284 PAGK: Phage-encoded virulence factor
Probab=50.99 E-value=15 Score=25.92 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 039894 4 TKTLLILLLAIILVLHNVVSATTT 27 (159)
Q Consensus 4 ~~~~~i~~la~~~~l~~~ls~~~~ 27 (159)
+|+|=||+...+.-+|+++|+.+.
T Consensus 2 kk~ksifL~l~~~LsA~~FSasam 25 (61)
T PF15284_consen 2 KKFKSIFLALVFILSAAGFSASAM 25 (61)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHH
Confidence 456666654444444567787775
No 9
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=50.52 E-value=34 Score=23.09 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhh
Q 039894 2 IFTKTLLILLLAIILVLHNVVS 23 (159)
Q Consensus 2 ~~~~~~~i~~la~~~~l~~~ls 23 (159)
+|..+-|||++.++..+..++|
T Consensus 3 ~~~iV~i~iv~~lLg~~I~~~~ 24 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSICTTL 24 (50)
T ss_pred ehHHHHHHHHHHHHHHHHHHHh
Confidence 4555666665555555444444
No 10
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=49.64 E-value=26 Score=26.65 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHh-hcccccchhhhccCCCC
Q 039894 4 TKTLLILLLAIILVLHNVV-SATTTVVHVEEENQNHD 39 (159)
Q Consensus 4 ~~~~~i~~la~~~~l~~~l-s~~~~~~~~e~~~~~~~ 39 (159)
..++|+-+||.+|.+|.+- |-++ --.|++|+|...
T Consensus 3 RRlwiLslLAVtLtVALAAPsQKs-KRSVtveqPsts 38 (100)
T PF05984_consen 3 RRLWILSLLAVTLTVALAAPSQKS-KRSVTVEQPSTS 38 (100)
T ss_pred hhhHHHHHHHHHHHHHhhcccccc-ccceeecCCccc
Confidence 3567777888877766432 2222 233477777753
No 11
>PHA03093 EEV glycoprotein; Provisional
Probab=44.50 E-value=34 Score=28.83 Aligned_cols=24 Identities=8% Similarity=0.272 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcc
Q 039894 2 IFTKTLLILLLAIILVLHNVVSAT 25 (159)
Q Consensus 2 ~~~~~~~i~~la~~~~l~~~ls~~ 25 (159)
||.+..+|.-|+.+|+|+++|+..
T Consensus 37 i~~RisiiiSIlsL~~i~~~LAlq 60 (185)
T PHA03093 37 ICIRISIIISILSLIAITATLALQ 60 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555443
No 12
>PF06116 RinB: Transcriptional activator RinB; InterPro: IPR009300 This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene [].
Probab=43.10 E-value=21 Score=24.68 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=13.3
Q ss_pred CchHHHHHHHHHHHH
Q 039894 1 MIFTKTLLILLLAII 15 (159)
Q Consensus 1 ~~~~~~~~i~~la~~ 15 (159)
||=.++||+|+|||-
T Consensus 1 MIKrilkiwftiamY 15 (53)
T PF06116_consen 1 MIKRILKIWFTIAMY 15 (53)
T ss_pred CHHHHHHHHHHHHHH
Confidence 788899999999985
No 13
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=43.04 E-value=21 Score=34.38 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcccc
Q 039894 2 IFTKTLLILLLAIILVLHNVVSATTT 27 (159)
Q Consensus 2 ~~~~~~~i~~la~~~~l~~~ls~~~~ 27 (159)
++.-+-||+|||++|+|...+.....
T Consensus 480 LWIsvAliVLLAaLlSfLtg~~fq~~ 505 (538)
T PF05781_consen 480 LWISVALIVLLAALLSFLTGLFFQRC 505 (538)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccch
Confidence 34445556666666666555555554
No 14
>PF06357 Omega-toxin: Omega-atracotoxin; InterPro: IPR009415 This family consists of several Hadronyche versuta (Blue mountains funnel-web spider) specific omega-atracotoxin proteins. Omega-Atracotoxin-Hv1a is an insect-specific neurotoxin whose phylogenetic specificity derives from its ability to antagonise insect, but not vertebrate, voltage-gated calcium channels. Two spatially proximal residues, Asn(27) and Arg(35), form a contiguous molecular surface that is essential for toxin activity. It has been proposed that this surface of the beta-hairpin is a key site for interaction of the toxin with insect calcium channels [].; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AXH_A 1HVW_A.
Probab=42.07 E-value=11 Score=24.22 Aligned_cols=17 Identities=53% Similarity=1.419 Sum_probs=9.2
Q ss_pred CCCCCCCCcccCCcccC
Q 039894 114 GKKCKYNEICCNGKCVN 130 (159)
Q Consensus 114 g~~C~~g~~CC~G~Cvd 130 (159)
|..|++.+.||.|.|..
T Consensus 8 gQPCPyne~CCs~sct~ 24 (37)
T PF06357_consen 8 GQPCPYNESCCSGSCTY 24 (37)
T ss_dssp TSB-SSCCCBSSS-EEE
T ss_pred CCcCCCCccccccccee
Confidence 45566666666666643
No 15
>COG5510 Predicted small secreted protein [Function unknown]
Probab=40.45 E-value=33 Score=22.86 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 039894 6 TLLILLLAIILVLHNVVSATTTV 28 (159)
Q Consensus 6 ~~~i~~la~~~~l~~~ls~~~~~ 28 (159)
.+.|++++++++.+.+|++=.|+
T Consensus 3 k~t~l~i~~vll~s~llaaCNT~ 25 (44)
T COG5510 3 KKTILLIALVLLASTLLAACNTM 25 (44)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Confidence 35677888888888888887764
No 16
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.33 E-value=26 Score=28.91 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHH--HHhhcccccchhhhcc
Q 039894 3 FTKTLLILLLAIILVLH--NVVSATTTVVHVEEEN 35 (159)
Q Consensus 3 ~~~~~~i~~la~~~~l~--~~ls~~~~~~~~e~~~ 35 (159)
|+..-.+++|||+++.+ ..+||.+ ..+.|++.
T Consensus 8 ~i~ii~viflai~~s~~~~~~~s~~P-~~~~~~qA 41 (161)
T COG5353 8 IIIIILVIFLAIILSIALFFWKSMKP-YHEAEEQA 41 (161)
T ss_pred eehhHHHHHHHHHHHHHHHHhHhcCc-cchhHHHH
Confidence 44333344455555544 4677777 65555543
No 17
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=39.58 E-value=13 Score=31.26 Aligned_cols=40 Identities=28% Similarity=0.554 Sum_probs=24.1
Q ss_pred CcccccCCCCCCCCccc-----CCc-ccCCCcCCCCCcccCCCCCCC
Q 039894 108 MNCGKCGKKCKYNEICC-----NGK-CVNPSFNRRHCGGCNNSCSNG 148 (159)
Q Consensus 108 ~NCG~Cg~~C~~g~~CC-----~G~-Cvdl~tD~~nCG~Cg~~C~~G 148 (159)
.+||.|.++|+.+..=- ++. =+ ...+-.+||.|-.+|+.+
T Consensus 204 ~~C~~C~~vCP~~~vl~~~~~~~~~~~i-~~~~C~~Cg~Cv~~CP~~ 249 (255)
T TIGR02163 204 TNCMDCFNVCPEPQVLRMPLKKGGSTLV-LSGDCTLCGRCIDVCHED 249 (255)
T ss_pred eEcCCccCcCCCCceeeccccCCCceEe-ccccccchhHHHHhCCcc
Confidence 37999999998753100 000 11 123345788888899876
No 18
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=39.19 E-value=8 Score=19.98 Aligned_cols=12 Identities=42% Similarity=1.259 Sum_probs=7.4
Q ss_pred CCcccCCCCCCC
Q 039894 137 HCGGCNNSCSNG 148 (159)
Q Consensus 137 nCG~Cg~~C~~G 148 (159)
+||.|..+|+.|
T Consensus 3 ~C~~C~~~Cp~~ 14 (15)
T PF12798_consen 3 GCGACVEVCPTG 14 (15)
T ss_pred CchHHHHHhcCC
Confidence 456666666654
No 19
>PHA03093 EEV glycoprotein; Provisional
Probab=38.86 E-value=35 Score=28.76 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhccCCCCCCCccccc
Q 039894 4 TKTLLILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQ 47 (159)
Q Consensus 4 ~~~~~i~~la~~~~l~~~ls~~~~~~~~e~~~~~~~~~~~~~~~ 47 (159)
+..-||.|+||+..||.-|+-=-.+.|...++..+++..+.+.+
T Consensus 43 iiiSIlsL~~i~~~LAlqln~Ck~~~e~~~~~~~~~~~~~~t~~ 86 (185)
T PHA03093 43 IIISILSLIAITATLALQLNKCKSANESAITDAALDNAASSTYS 86 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhccccccccc
Confidence 44455666666666666555433221222333344555566655
No 20
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=37.95 E-value=42 Score=22.64 Aligned_cols=30 Identities=33% Similarity=0.885 Sum_probs=16.4
Q ss_pred cccCCCcCCCCCcccCCCCCCCCccCCceec
Q 039894 127 KCVNPSFNRRHCGGCNNSCSNGEFCVLGLCN 157 (159)
Q Consensus 127 ~Cvdl~tD~~nCG~Cg~~C~~G~~C~~G~C~ 157 (159)
.|..-..-.++|=+ ...|-.|+.|++|.|.
T Consensus 22 ~C~~Cr~~~~rC~R-d~~CC~g~~CvnG~C~ 51 (52)
T PF04706_consen 22 KCLPCRKRRKRCTR-DAMCCPGNLCVNGVCT 51 (52)
T ss_pred cChhhccCCCCCCC-CcccCCCCeeeCCEec
Confidence 34444444444433 4556666777777774
No 21
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=37.39 E-value=43 Score=23.54 Aligned_cols=20 Identities=35% Similarity=0.220 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 039894 7 LLILLLAIILVLHNVVSATT 26 (159)
Q Consensus 7 ~~i~~la~~~~l~~~ls~~~ 26 (159)
+..+++|.+|||+..-|--.
T Consensus 2 R~~lLf~aiLalsla~s~ga 21 (59)
T PF03823_consen 2 RSTLLFAAILALSLARSFGA 21 (59)
T ss_pred hhHHHHHHHHHHHHHHHhhh
Confidence 45566777777777766665
No 22
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=35.34 E-value=39 Score=28.77 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhh
Q 039894 2 IFTKTLLILLLAIILVLHNVVS 23 (159)
Q Consensus 2 ~~~~~~~i~~la~~~~l~~~ls 23 (159)
||.++-+|++|+|++.+...|.
T Consensus 15 iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 15 ILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred hHHHHHHHHHHHHHHHhhhhee
Confidence 4555555555555555555554
No 23
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=34.99 E-value=38 Score=24.01 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 039894 7 LLILLLAIIL 16 (159)
Q Consensus 7 ~~i~~la~~~ 16 (159)
++|+++++++
T Consensus 5 kii~iii~li 14 (85)
T PF11337_consen 5 KIILIIIILI 14 (85)
T ss_pred HHHHHHHHHH
Confidence 3344433333
No 24
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=34.79 E-value=42 Score=26.47 Aligned_cols=40 Identities=23% Similarity=0.468 Sum_probs=21.6
Q ss_pred cccccCCCCCCCCcccC--Cc-ccCCCcCCCCCcccCCCCCCCC
Q 039894 109 NCGKCGKKCKYNEICCN--GK-CVNPSFNRRHCGGCNNSCSNGE 149 (159)
Q Consensus 109 NCG~Cg~~C~~g~~CC~--G~-Cvdl~tD~~nCG~Cg~~C~~G~ 149 (159)
.||.|-.+|+.+..=-. +. =++ ...-..||.|-.+|+.+.
T Consensus 117 ~Cg~C~~aCp~~ai~~~~~~~~~i~-~~~C~~Cg~Cv~~CP~~A 159 (165)
T TIGR01944 117 GCTKCIQACPVDAIVGAAKAMHTVI-ADECTGCDLCVEPCPTDC 159 (165)
T ss_pred ChhHHHHhCCccceEecCCCceEee-cccccChhHHHHhcCcCc
Confidence 58888888886421110 00 000 011235888888888763
No 25
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=34.73 E-value=46 Score=27.54 Aligned_cols=23 Identities=9% Similarity=0.343 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc
Q 039894 3 FTKTLLILLLAIILVLHNVVSAT 25 (159)
Q Consensus 3 ~~~~~~i~~la~~~~l~~~ls~~ 25 (159)
|.++.+|.-|+.+|+|+++|+..
T Consensus 35 ~~Ri~~~iSIisL~~l~v~LaL~ 57 (161)
T PHA02673 35 FFRLMAAIAIIVLAILVVILALA 57 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555443
No 26
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=34.14 E-value=38 Score=23.54 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhcccccchhhhccCC
Q 039894 9 ILLLAIILVLHNVVSATTTVVHVEEENQN 37 (159)
Q Consensus 9 i~~la~~~~l~~~ls~~~~~~~~e~~~~~ 37 (159)
++=|+++.++-.+||+-+ +|+|+++-+
T Consensus 4 ~~K~~~~a~vl~~Lt~CT--G~v~Nk~kn 30 (56)
T PF13978_consen 4 FIKIAVVAAVLATLTACT--GHVENKEKN 30 (56)
T ss_pred HHHHHHHHHHHHHHhhcc--ceeeccCCC
Confidence 444566666666888877 577776654
No 27
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=34.12 E-value=26 Score=27.68 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 039894 6 TLLILLLAIILV 17 (159)
Q Consensus 6 ~~~i~~la~~~~ 17 (159)
||||++|++++.
T Consensus 1 MKll~~lilli~ 12 (212)
T PF11912_consen 1 MKLLISLILLIL 12 (212)
T ss_pred CcHHHHHHHHHH
Confidence 455444444433
No 28
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=33.77 E-value=25 Score=29.78 Aligned_cols=41 Identities=27% Similarity=0.512 Sum_probs=23.9
Q ss_pred CcccccCCCCCCCCccc---CCccc---CCCcCCCCCcccCCCCCCC
Q 039894 108 MNCGKCGKKCKYNEICC---NGKCV---NPSFNRRHCGGCNNSCSNG 148 (159)
Q Consensus 108 ~NCG~Cg~~C~~g~~CC---~G~Cv---dl~tD~~nCG~Cg~~C~~G 148 (159)
.+||.|.++|+.+..=- .+.=. -...+-..||.|-.+|+.+
T Consensus 211 ~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~ 257 (271)
T PRK09477 211 TRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSED 257 (271)
T ss_pred cccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCcc
Confidence 36888888888764321 01000 0112344789999999875
No 29
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=32.54 E-value=64 Score=20.40 Aligned_cols=40 Identities=30% Similarity=0.774 Sum_probs=21.9
Q ss_pred CCCCCcccCCcccCCCcCCCCCcccCCCCCCCCccCCceec
Q 039894 117 CKYNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCN 157 (159)
Q Consensus 117 C~~g~~CC~G~Cvdl~tD~~nCG~Cg~~C~~G~~C~~G~C~ 157 (159)
|..+++--+|.|+....--..|- =+..|..+..|+.|.|.
T Consensus 1 C~~~~~~~~~~C~~~~~~g~~C~-~~~qC~~~s~C~~g~C~ 40 (52)
T PF01683_consen 1 CPSGQVAINGQCVPRVQPGESCE-SDEQCIGGSVCVNGRCQ 40 (52)
T ss_pred CCCCCEEECCEECccCCCCCCCC-CcCCCCCcCEEcCCEeE
Confidence 34445555566655544444443 24555666777777764
No 30
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=32.20 E-value=67 Score=20.82 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 039894 3 FTKTLLILLLAIILVLHNVV 22 (159)
Q Consensus 3 ~~~~~~i~~la~~~~l~~~l 22 (159)
+-|-.++|-|+|++.+.+..
T Consensus 12 YEr~Wi~F~l~mi~vFi~li 31 (38)
T PF09125_consen 12 YERGWIAFALAMILVFIALI 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 34567888888888866543
No 31
>PF08087 Toxin_18: Conotoxin O-superfamily; InterPro: IPR012623 This family consists of members of the conotoxin O-superfamily. The O-superfamily of conotoxins consists of 3 groups of Conus peptides that belong to the same structural group. These 3 groups differ in their pharmacological properties: the w-conotoxins which inhibit calcium channels, the delta-conotoxins which slow down the inactivation rate of voltage -sensitive sodium channels and the muO-conotoxins block the voltage sensitive sodium currents [].
Probab=31.74 E-value=21 Score=22.13 Aligned_cols=17 Identities=47% Similarity=1.339 Sum_probs=13.4
Q ss_pred CCCCCCCCcccCCcccC
Q 039894 114 GKKCKYNEICCNGKCVN 130 (159)
Q Consensus 114 g~~C~~g~~CC~G~Cvd 130 (159)
|+.|++...||.|.|.-
T Consensus 7 GrnC~~~~ecCSGAcSa 23 (31)
T PF08087_consen 7 GRNCKYSYECCSGACSA 23 (31)
T ss_pred CcccccchhhhcccchH
Confidence 67788888888888753
No 32
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=30.76 E-value=41 Score=21.92 Aligned_cols=19 Identities=32% Similarity=0.274 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039894 3 FTKTLLILLLAIILVLHNV 21 (159)
Q Consensus 3 ~~~~~~i~~la~~~~l~~~ 21 (159)
|.|.-.+.++++++.|++.
T Consensus 24 ~~k~~~~~~~~~li~lai~ 42 (44)
T PF07835_consen 24 LTKWGTIAIAAILIFLAIF 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554
No 33
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=29.61 E-value=50 Score=19.41 Aligned_cols=26 Identities=31% Similarity=0.669 Sum_probs=18.5
Q ss_pred CCCcCCCCCcccCCCCCCCCccCC---cee
Q 039894 130 NPSFNRRHCGGCNNSCSNGEFCVL---GLC 156 (159)
Q Consensus 130 dl~tD~~nCG~Cg~~C~~G~~C~~---G~C 156 (159)
.....+..|-. ...|+.|..|.+ ++|
T Consensus 8 ~~~~~~~~C~~-~~~CP~g~~C~~~~~~~C 36 (38)
T smart00289 8 DLGGSPVRCSP-NGSCPSGYSCQNSKQGIC 36 (38)
T ss_pred cCCCCCeECCC-CCCCCCCCEEecCCCccc
Confidence 44566666766 788888888887 665
No 34
>PF09065 Haemadin: Haemadin; InterPro: IPR015150 Members of this family adopt a secondary structure consisting of five short beta-strands (beta1-beta5), which are arranged in two antiparallel distorted sheets formed by strands beta1-beta4-beta5 and beta2-beta3 facing each other. This beta-sandwich is stabilised by six enclosed cysteines arranged in a [1-2, 3-5, 4-6] disulphide pairing resulting in a disulphide-rich hydrophobic core that is largely inaccessible to bulk solvent. The close proximity of disulphide bonds [3-5] and [4-6] organises haemadin into four distinct loops. The N-terminal segment of this domain binds to the active site of thrombin, inhibiting it []. ; PDB: 1E0F_K.
Probab=29.28 E-value=17 Score=21.67 Aligned_cols=15 Identities=40% Similarity=1.090 Sum_probs=9.3
Q ss_pred CCCCCCCcccCCccc
Q 039894 115 KKCKYNEICCNGKCV 129 (159)
Q Consensus 115 ~~C~~g~~CC~G~Cv 129 (159)
+.|-+|+.|=+|+|.
T Consensus 6 kiclygqscndgqcs 20 (27)
T PF09065_consen 6 KICLYGQSCNDGQCS 20 (27)
T ss_dssp SEE-TTEEESSS-EE
T ss_pred eeeEecccccCCccc
Confidence 567777777777774
No 35
>PF04060 FeS: Putative Fe-S cluster; InterPro: IPR007202 These proteins contain a domain with four conserved cysteines that probably form an Fe-S redox cluster.; GO: 0051536 iron-sulfur cluster binding; PDB: 2YCL_A 4DJF_E 4DJD_C 4DJE_C.
Probab=29.23 E-value=23 Score=21.79 Aligned_cols=10 Identities=50% Similarity=1.175 Sum_probs=3.9
Q ss_pred cCcccccCCC
Q 039894 107 RMNCGKCGKK 116 (159)
Q Consensus 107 ~~NCG~Cg~~ 116 (159)
..|||+||..
T Consensus 4 ~~nCg~CG~~ 13 (35)
T PF04060_consen 4 GTNCGACGYP 13 (35)
T ss_dssp S----TTSSS
T ss_pred CCcCCCCCCc
Confidence 3578888765
No 36
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=28.42 E-value=19 Score=26.76 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 039894 3 FTKTLLILLLAIILVLHNVV 22 (159)
Q Consensus 3 ~~~~~~i~~la~~~~l~~~l 22 (159)
++|..+++++++++++.+.+
T Consensus 4 ~kk~l~~~l~~~~la~~~~~ 23 (144)
T PF12869_consen 4 LKKILIIILILIVLAFIIAL 23 (144)
T ss_dssp --------------------
T ss_pred hhhHHHHHHHHHHHHHHHhc
Confidence 66666666666666655553
No 37
>TIGR02537 arch_flag_Nterm archaeal flagellin N-terminal-like domain. This model describes a hydrophobic N-terminal sequence of archaeal flagellins and other archaeal proteins. The sequence is directly analogous to bacterial sequences recognized by TIGR02532, which has cleavage motif resembling G^FxxxE followed by strongly hydrophobic sequence. Such sequences are the recognized for cleavage and methylation, and include pilins and other pilus components and competence and type II secretion secretion proteins. In the present family, the E is not conversed and sequence differs enough that there is no overlap between this family and TIGR02532.
Probab=26.48 E-value=71 Score=18.78 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 039894 8 LILLLAIILVLHNV 21 (159)
Q Consensus 8 ~i~~la~~~~l~~~ 21 (159)
.|+++||++.++.+
T Consensus 10 ~iiliai~ivla~~ 23 (26)
T TIGR02537 10 TIILIAITIVLAAA 23 (26)
T ss_pred HHHHHHHHHHHHHh
Confidence 45556666665543
No 38
>PF14055 NVEALA: NVEALA protein
Probab=25.41 E-value=41 Score=22.94 Aligned_cols=10 Identities=50% Similarity=0.667 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 039894 6 TLLILLLAII 15 (159)
Q Consensus 6 ~~~i~~la~~ 15 (159)
++++++++++
T Consensus 4 ~~~~~~~~~v 13 (65)
T PF14055_consen 4 ILKILLFAAV 13 (65)
T ss_pred chHHHHHHHH
Confidence 3333444443
No 39
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=25.34 E-value=62 Score=24.52 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 039894 7 LLILLLAIILVLHNVV 22 (159)
Q Consensus 7 ~~i~~la~~~~l~~~l 22 (159)
|.++.+||.+++++++
T Consensus 9 k~~l~~aiG~~lal~i 24 (104)
T PF01307_consen 9 KSYLAAAIGVSLALII 24 (104)
T ss_pred cchhHHHHHHHHHHHH
Confidence 4455555555555433
No 40
>COG4478 Predicted membrane protein [Function unknown]
Probab=24.75 E-value=80 Score=27.15 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 039894 4 TKTLLILLLAIILVLHNVVSA 24 (159)
Q Consensus 4 ~~~~~i~~la~~~~l~~~ls~ 24 (159)
+|+.+|+.+.++++|+++||-
T Consensus 3 t~l~fi~s~~~ii~lsvllti 23 (210)
T COG4478 3 TKLIFIFSLLIIIALSVLLTI 23 (210)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888877553
No 41
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=24.72 E-value=1.9e+02 Score=18.35 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhccCC
Q 039894 6 TLLILLLAIILVLHNVVSATTTVVHVEEENQN 37 (159)
Q Consensus 6 ~~~i~~la~~~~l~~~ls~~~~~~~~e~~~~~ 37 (159)
+.+++++++++++.++-+.+.++.+..+.-..
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~~pl~~l~~~~~~ 36 (70)
T PF00672_consen 5 FLIILLLSLLLAWLLARRITRPLRRLSDAMQR 36 (70)
T ss_dssp HHHHHHHHHHHHHH--HTTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555566666666555554444
No 42
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=24.55 E-value=33 Score=28.58 Aligned_cols=41 Identities=29% Similarity=0.794 Sum_probs=23.0
Q ss_pred CcccccCCCCCCCCccc----CCcccCCCc---CCCCCcccCCCCCCCC
Q 039894 108 MNCGKCGKKCKYNEICC----NGKCVNPSF---NRRHCGGCNNSCSNGE 149 (159)
Q Consensus 108 ~NCG~Cg~~C~~g~~CC----~G~Cvdl~t---D~~nCG~Cg~~C~~G~ 149 (159)
.+||.|-.+|+.+..=- .+. ..... .=..||.|-.+|+.+.
T Consensus 51 ~~C~~C~~~Cp~~a~~~~~~~~~~-~~~~~~~~~C~~Cg~C~~~CP~~A 98 (295)
T TIGR02494 51 LGCGKCVEVCPAGTARLSELADGR-NRIIIRREKCTHCGKCTEACPSGA 98 (295)
T ss_pred CCCchhhhhCcccccccccccCCC-cceeechhhcCchhHhhccCcHhH
Confidence 37888888888764210 000 00011 1236888888998653
No 43
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=24.44 E-value=81 Score=25.54 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=12.0
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 039894 1 MIFTKTLLILLLAIILVLHN 20 (159)
Q Consensus 1 ~~~~~~~~i~~la~~~~l~~ 20 (159)
|-++|.++++.+|++|+|+.
T Consensus 1 ~~~~kkl~~~~v~~~l~lg~ 20 (170)
T PRK12750 1 MKLAKKLVLAAVVLPLTLGT 20 (170)
T ss_pred CchHHHHHHHHHHHHHHHHh
Confidence 44566666666666666643
No 44
>PF01599 Ribosomal_S27: Ribosomal protein S27a; InterPro: IPR002906 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesized as a C-terminal extension of ubiquitin (CEP) (IPR000626 from INTERPRO). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis []. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2K4X_A 3U5C_f 3U5G_f 2XZN_9 2XZM_9.
Probab=24.36 E-value=37 Score=22.67 Aligned_cols=15 Identities=53% Similarity=0.979 Sum_probs=10.1
Q ss_pred eccccccCcccccCC
Q 039894 101 VELLKDRMNCGKCGK 115 (159)
Q Consensus 101 vdl~tD~~NCG~Cg~ 115 (159)
..--.|+..||.||-
T Consensus 32 MA~H~dR~~CGKCg~ 46 (47)
T PF01599_consen 32 MAEHKDRHYCGKCGY 46 (47)
T ss_dssp EEE-SSEEEETTTSS
T ss_pred eeecCCCccCCCccc
Confidence 344478888888874
No 45
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.06 E-value=60 Score=22.25 Aligned_cols=9 Identities=56% Similarity=0.774 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 039894 5 KTLLILLLA 13 (159)
Q Consensus 5 ~~~~i~~la 13 (159)
++.++|+++
T Consensus 3 ~l~~~l~~~ 11 (85)
T TIGR02209 3 KLYVLLLLA 11 (85)
T ss_pred hHHHHHHHH
Confidence 334443333
No 46
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=24.05 E-value=63 Score=28.25 Aligned_cols=41 Identities=17% Similarity=0.463 Sum_probs=24.5
Q ss_pred CcccccCCCCCCCCccc--CC--------ccc---------CCCcCCCCCcccCCCCCCC
Q 039894 108 MNCGKCGKKCKYNEICC--NG--------KCV---------NPSFNRRHCGGCNNSCSNG 148 (159)
Q Consensus 108 ~NCG~Cg~~C~~g~~CC--~G--------~Cv---------dl~tD~~nCG~Cg~~C~~G 148 (159)
.+||.|-++|+..+.== .| .=. +....=..||.|..+||.|
T Consensus 8 i~Cg~C~~~Cp~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~ 67 (397)
T TIGR03379 8 IKCTVCTVYCPVAKANPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSD 67 (397)
T ss_pred CCCCCCcccCcCccccCCccCcccCCcHHHHHhcccchhcccccccCcCcCccchhcCCC
Confidence 47999999999754300 00 000 0111224599999999986
No 47
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=23.85 E-value=1e+02 Score=21.32 Aligned_cols=16 Identities=38% Similarity=0.355 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 039894 5 KTLLILLLAIILVLHN 20 (159)
Q Consensus 5 ~~~~i~~la~~~~l~~ 20 (159)
++..||++++++.|++
T Consensus 37 ~~~~i~~~~~i~~l~v 52 (59)
T PF09889_consen 37 KTQYIFFGIFILFLAV 52 (59)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555554444443
No 48
>PRK10540 lipoprotein; Provisional
Probab=23.80 E-value=1e+02 Score=22.08 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhccc
Q 039894 9 ILLLAIILVLHNVVSATT 26 (159)
Q Consensus 9 i~~la~~~~l~~~ls~~~ 26 (159)
|..+++.++++..|+.-+
T Consensus 8 ~~~~~~~~~~a~~L~gC~ 25 (72)
T PRK10540 8 MAAAVLAITLAMSLSACS 25 (72)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 334444444455666654
No 49
>smart00608 ACR ADAM Cysteine-Rich Domain.
Probab=23.66 E-value=51 Score=25.62 Aligned_cols=18 Identities=44% Similarity=1.101 Sum_probs=15.8
Q ss_pred CCCCCCCCcccCCcccCC
Q 039894 114 GKKCKYNEICCNGKCVNP 131 (159)
Q Consensus 114 g~~C~~g~~CC~G~Cvdl 131 (159)
|.+|..+.+|-+++||++
T Consensus 120 GT~CG~~kvC~n~~Cv~~ 137 (137)
T smart00608 120 GTKCGPGKVCINGQCVDV 137 (137)
T ss_pred CCCcCCCCccCCCCcccC
Confidence 688999999999999975
No 50
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=22.41 E-value=17 Score=20.32 Aligned_cols=12 Identities=33% Similarity=0.996 Sum_probs=6.2
Q ss_pred CCcccCCCCCCC
Q 039894 137 HCGGCNNSCSNG 148 (159)
Q Consensus 137 nCG~Cg~~C~~G 148 (159)
+||.|-.+|+.+
T Consensus 10 ~Cg~C~~~CP~~ 21 (24)
T PF00037_consen 10 GCGRCVEACPFD 21 (24)
T ss_dssp S-THHHHHSTTS
T ss_pred Ccchhhhhcccc
Confidence 456666666554
No 51
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=22.24 E-value=96 Score=25.68 Aligned_cols=21 Identities=33% Similarity=0.260 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 039894 4 TKTLLILLLAIILVLHNVVSA 24 (159)
Q Consensus 4 ~~~~~i~~la~~~~l~~~ls~ 24 (159)
++..|||++++++.|+.--+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (289)
T TIGR03659 2 KILSLILLALLSLGLTGCSSS 22 (289)
T ss_pred chhHHHHHHHHHHHHHhcccc
Confidence 356677777777776654333
No 52
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=21.76 E-value=1e+02 Score=24.83 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccc
Q 039894 3 FTKTLLILLLAIILVLHNVVSATT 26 (159)
Q Consensus 3 ~~~~~~i~~la~~~~l~~~ls~~~ 26 (159)
|--.-+.+++||++.+++++++..
T Consensus 10 FlaK~vTvVvaI~~vv~~I~~~~~ 33 (155)
T PF08496_consen 10 FLAKIVTVVVAILAVVGLIVAAAQ 33 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455667777777777766655
No 53
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=21.70 E-value=68 Score=29.06 Aligned_cols=25 Identities=28% Similarity=0.204 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Q 039894 4 TKTLLILLLAIILVLHNVVSATTTV 28 (159)
Q Consensus 4 ~~~~~i~~la~~~~l~~~ls~~~~~ 28 (159)
+|.++|++++++++|.+..+.+.++
T Consensus 8 ~~~~~~~l~~~~~~l~l~~~~~~~~ 32 (337)
T PRK14872 8 KKVRFIVYLIIALGIIVSWSLPRPV 32 (337)
T ss_pred cchhhHHHHHHHHHHHHHhcCCcHH
Confidence 5677777777777776665555443
No 54
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=21.69 E-value=40 Score=28.51 Aligned_cols=15 Identities=53% Similarity=1.254 Sum_probs=11.2
Q ss_pred ccccCcccccCCCCC
Q 039894 104 LKDRMNCGKCGKKCK 118 (159)
Q Consensus 104 ~tD~~NCG~Cg~~C~ 118 (159)
..+..|||+||..|.
T Consensus 147 lp~~lnCg~CG~~C~ 161 (229)
T PRK14494 147 LPYNLNCGHCGFNCK 161 (229)
T ss_pred CCCCCCCCccCcCHH
Confidence 445789999997663
No 55
>PF09610 Myco_arth_vir_N: Mycoplasma virulence signal region (Myco_arth_vir_N); InterPro: IPR011732 This entry represents the N-terminal region of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum. It includes a probable signal sequence or signal anchor, which, in most instances, has four consecutive Lys residues before the hydrophobic stretch.
Probab=21.60 E-value=71 Score=20.15 Aligned_cols=19 Identities=32% Similarity=0.156 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 039894 8 LILLLAIILVLHNVVSATT 26 (159)
Q Consensus 8 ~i~~la~~~~l~~~ls~~~ 26 (159)
-|++||++-+|...+|...
T Consensus 10 ~Il~la~~a~l~as~s~g~ 28 (33)
T PF09610_consen 10 KILTLALTASLLASGSFGS 28 (33)
T ss_pred hhhhHHHHHHHHHceeeee
Confidence 3666677766666665443
No 56
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=21.49 E-value=72 Score=25.29 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=7.9
Q ss_pred Hhhcccccchhhh
Q 039894 21 VVSATTTVVHVEE 33 (159)
Q Consensus 21 ~ls~~~~~~~~e~ 33 (159)
.||+..+++++++
T Consensus 52 ~lss~~~~~~v~n 64 (121)
T COG4744 52 LLSSNEDITIVKN 64 (121)
T ss_pred ccCCCCCceEEec
Confidence 5677666655554
No 57
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=21.47 E-value=48 Score=20.55 Aligned_cols=17 Identities=41% Similarity=1.271 Sum_probs=10.2
Q ss_pred CCCCCCCCcccCCcccC
Q 039894 114 GKKCKYNEICCNGKCVN 130 (159)
Q Consensus 114 g~~C~~g~~CC~G~Cvd 130 (159)
|..|.....||.|.|..
T Consensus 7 GqQCtSDgqCC~G~C~t 23 (31)
T PF08116_consen 7 GQQCTSDGQCCNGRCRT 23 (31)
T ss_pred ccccCcCCceecchhHH
Confidence 44555556677777643
No 58
>PRK13791 lysozyme inhibitor; Provisional
Probab=21.21 E-value=80 Score=24.28 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039894 4 TKTLLILLLAIILVLHN 20 (159)
Q Consensus 4 ~~~~~i~~la~~~~l~~ 20 (159)
++||.+|+++++++|+.
T Consensus 2 ~~mk~~~~~~~~~~ls~ 18 (113)
T PRK13791 2 MKRKLIPFTLFLAALSA 18 (113)
T ss_pred chHHHHHHHHHHHHHhh
Confidence 46777766666555553
No 59
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=21.10 E-value=1.7e+02 Score=28.41 Aligned_cols=14 Identities=21% Similarity=-0.099 Sum_probs=9.2
Q ss_pred CcccccccccCccc
Q 039894 50 DSFEDQSISSGRSL 63 (159)
Q Consensus 50 ~~~~~~~~~~sRfL 63 (159)
|+...+.++++||=
T Consensus 211 pl~l~eli~~Grfg 224 (534)
T KOG3653|consen 211 PLQLLELIGRGRFG 224 (534)
T ss_pred chhhHHHhhcCccc
Confidence 34455668899984
No 60
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=21.05 E-value=35 Score=23.42 Aligned_cols=12 Identities=67% Similarity=1.295 Sum_probs=9.1
Q ss_pred ccccCcccccCC
Q 039894 104 LKDRMNCGKCGK 115 (159)
Q Consensus 104 ~tD~~NCG~Cg~ 115 (159)
-.|+.+||.||-
T Consensus 34 H~dR~~CGkCgy 45 (51)
T COG1998 34 HKDRWACGKCGY 45 (51)
T ss_pred cCceeEeccccc
Confidence 367889998873
No 61
>PF07403 DUF1505: Protein of unknown function (DUF1505); InterPro: IPR009981 This family consists of several uncharacterised Caenorhabditis elegans proteins of around 115 resides in length. Members of this family contain 6 highly conserved cysteine residues. The function of this family is unknown.
Probab=21.00 E-value=60 Score=25.41 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 039894 8 LILLLAIILVLHNVVSATT 26 (159)
Q Consensus 8 ~i~~la~~~~l~~~ls~~~ 26 (159)
++++.++++++.+++.+++
T Consensus 3 f~~~~vl~lsv~vA~~~~~ 21 (114)
T PF07403_consen 3 FFPSTVLLLSVTVALASTS 21 (114)
T ss_pred chhhhHHHHHHHHHhcCCC
Confidence 3343444444444444444
No 62
>PRK06273 ferredoxin; Provisional
Probab=20.49 E-value=29 Score=27.89 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=7.7
Q ss_pred CCcccCCCCCCC
Q 039894 137 HCGGCNNSCSNG 148 (159)
Q Consensus 137 nCG~Cg~~C~~G 148 (159)
.||.|-.+||.+
T Consensus 95 ~Cg~C~~aCP~~ 106 (165)
T PRK06273 95 YCLYCHDFCPVF 106 (165)
T ss_pred CCCCcchhCCHh
Confidence 366666677665
No 63
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=20.23 E-value=73 Score=17.05 Aligned_cols=14 Identities=36% Similarity=0.935 Sum_probs=8.7
Q ss_pred CCCCCccCCc-eecC
Q 039894 145 CSNGEFCVLG-LCNY 158 (159)
Q Consensus 145 C~~G~~C~~G-~C~Y 158 (159)
|..|..|..| .|.|
T Consensus 2 Ck~~~~C~~~~~C~f 16 (19)
T PF14608_consen 2 CKFGPNCTNGDNCPF 16 (19)
T ss_pred CcCcCCCCCCCcCcc
Confidence 5555566666 6665
No 64
>PF01917 Arch_flagellin: Archaebacterial flagellin; InterPro: IPR002774 Archaeal motility occurs by the rotation of flagella that are different to bacterial flagella, but show similarity to bacterial type IV pili. These similarities include the multiflagellin nature of the flagellar filament, N-terminal sequence similarities, as well as the presence of homologous proteins in the two systems [, ]. Also unlike bacterial flagellins but similar to type IV pilins, archaeal flagellins are initially synthesised with a short leader peptide that is cleaved by a membrane-located peptidase [, ]. The enzyme responsible for the removal of the this leader peptide is FlaK [].; GO: 0005198 structural molecule activity, 0006928 cellular component movement
Probab=20.17 E-value=88 Score=24.73 Aligned_cols=13 Identities=31% Similarity=0.490 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 039894 8 LILLLAIILVLHN 20 (159)
Q Consensus 8 ~i~~la~~~~l~~ 20 (159)
+|++|||+++-|+
T Consensus 8 ~IvfIA~VlVAAv 20 (190)
T PF01917_consen 8 AIVFIAFVLVAAV 20 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 5666776665443
Done!