Query 039894
Match_columns 159
No_of_seqs 143 out of 216
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 04:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hvw_A Omega-ACTX-HV1A, omega- 76.0 1.1 3.8E-05 26.0 1.3 18 114-131 5-22 (26)
2 4aor_D Trypsin inhibitor 3; hy 45.6 11 0.00037 23.2 1.8 26 77-103 3-28 (37)
3 1axh_A Atracotoxin-HVI, ACTX-H 42.3 6.2 0.00021 24.4 0.3 17 114-130 8-24 (37)
4 3dl8_E Protein-export membrane 40.0 15 0.00052 27.0 2.2 24 5-28 56-79 (107)
5 1n7d_A LDL receptor, low-densi 39.3 65 0.0022 29.1 6.6 49 105-157 78-140 (699)
6 2fdn_A Ferredoxin; electron tr 35.6 13 0.00043 22.0 1.0 38 109-149 10-51 (55)
7 1vf5_E Protein PET L; photosyn 33.9 48 0.0016 19.9 3.3 21 1-21 1-21 (32)
8 1m56_D Cytochrome C oxidase; m 30.5 44 0.0015 21.6 3.0 20 3-22 31-50 (51)
9 1rgv_A Ferredoxin; electron tr 29.1 34 0.0012 21.7 2.3 13 108-120 9-21 (80)
10 1qle_D Cytochrome AA3, ccytoch 29.0 45 0.0015 20.8 2.8 19 3-21 23-41 (43)
11 1n7d_A LDL receptor, low-densi 21.4 1.9E+02 0.0067 25.9 6.5 51 104-156 155-227 (699)
No 1
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=76.02 E-value=1.1 Score=25.99 Aligned_cols=18 Identities=44% Similarity=1.185 Sum_probs=10.9
Q ss_pred CCCCCCCCcccCCcccCC
Q 039894 114 GKKCKYNEICCNGKCVNP 131 (159)
Q Consensus 114 g~~C~~g~~CC~G~Cvdl 131 (159)
|..|++.+.||.|.|++-
T Consensus 5 gq~Cp~~e~CCSGsCt~~ 22 (26)
T 1hvw_A 5 GQPCPYNENCCSQSCTGG 22 (26)
T ss_dssp TSBCSSTTSBSSCCEETT
T ss_pred CCcCCCCccccccccccc
Confidence 345666666666666653
No 2
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=45.62 E-value=11 Score=23.23 Aligned_cols=26 Identities=35% Similarity=0.745 Sum_probs=17.9
Q ss_pred ccccccccccCCccccccccccceecc
Q 039894 77 TCDKFPRICYFEGSPGSSCCKKKCVEL 103 (159)
Q Consensus 77 ~C~k~~~IC~~~~~~G~~CC~g~Cvdl 103 (159)
.|.+...||.-.+ +...||.|.||.-
T Consensus 3 ~c~~s~~ic~~f~-~p~~ccsg~cvph 28 (37)
T 4aor_D 3 KCSPSGAICSGFG-PPEQCCSGACVPH 28 (37)
T ss_dssp -CBCTTCEECTTS-CGGGBTTSCEEEC
T ss_pred ccccCCCccCCCC-CccccccccccCC
Confidence 5777888887433 3356999999864
No 3
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=42.31 E-value=6.2 Score=24.45 Aligned_cols=17 Identities=47% Similarity=1.218 Sum_probs=8.8
Q ss_pred CCCCCCCCcccCCcccC
Q 039894 114 GKKCKYNEICCNGKCVN 130 (159)
Q Consensus 114 g~~C~~g~~CC~G~Cvd 130 (159)
|..|++.+.||.|.|..
T Consensus 8 gQPCpyne~CCs~sct~ 24 (37)
T 1axh_A 8 GQPCPYNENCCSQSCTF 24 (37)
T ss_dssp TSBCSSGGGBSSSCEEE
T ss_pred CCcCCCcccccccccce
Confidence 34455555555555543
No 4
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=40.05 E-value=15 Score=27.04 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 039894 5 KTLLILLLAIILVLHNVVSATTTV 28 (159)
Q Consensus 5 ~~~~i~~la~~~~l~~~ls~~~~~ 28 (159)
....++++++.++|+...+...++
T Consensus 56 ~ilailF~v~sl~L~~l~~~~~sv 79 (107)
T 3dl8_E 56 YWLGALFLVLALLLSVIPKEKGSV 79 (107)
T ss_dssp HHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHhcCCcch
Confidence 334444444444444443443333
No 5
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=39.30 E-value=65 Score=29.07 Aligned_cols=49 Identities=27% Similarity=0.653 Sum_probs=24.6
Q ss_pred cccCcccccCCCCCCCC-cccCCcccCC------------CcCCCCCcccCCCCCCCC-ccCCceec
Q 039894 105 KDRMNCGKCGKKCKYNE-ICCNGKCVNP------------SFNRRHCGGCNNSCSNGE-FCVLGLCN 157 (159)
Q Consensus 105 tD~~NCG~Cg~~C~~g~-~CC~G~Cvdl------------~tD~~nCG~Cg~~C~~G~-~C~~G~C~ 157 (159)
+|+.+|.. ..|..++ .|-+|.|+.. .+|..+|.. ..|+.++ .|..|.|.
T Consensus 78 sDE~~C~~--~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~C~~--~~C~~~~f~C~~~~Ci 140 (699)
T 1n7d_A 78 SDEQGCPP--KTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV--LTCGPASFQCNSSTCI 140 (699)
T ss_dssp CTTTSCSS--CCCCSSCCCSSCC----CCCTTCSSCCSSSSCSSSSCCC--CCCCSSCCCCSSSCCC
T ss_pred cccCcccc--cccccCcEEcCCCCEecHHHcCCCcCcCCCCCccCCcCc--cccCccccCCCCCccc
Confidence 56777753 3455433 4544555432 377888753 3455443 56666654
No 6
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=35.63 E-value=13 Score=22.00 Aligned_cols=38 Identities=26% Similarity=0.774 Sum_probs=20.4
Q ss_pred cccccCCCCCCCCccc-CCcccCCCcCC---CCCcccCCCCCCCC
Q 039894 109 NCGKCGKKCKYNEICC-NGKCVNPSFNR---RHCGGCNNSCSNGE 149 (159)
Q Consensus 109 NCG~Cg~~C~~g~~CC-~G~Cvdl~tD~---~nCG~Cg~~C~~G~ 149 (159)
+||.|-.+|+.+..=- .+. ...|+ ..||.|-.+||.+.
T Consensus 10 ~C~~C~~~CP~~ai~~~~~~---~~~~~~~C~~C~~C~~~CP~~a 51 (55)
T 2fdn_A 10 SCGACEPECPVNAISSGDDR---YVIDADTCIDCGACAGVCPVDA 51 (55)
T ss_dssp CCCTTGGGCTTCCEECCSSS---CEECTTTCCCCCHHHHTCTTCC
T ss_pred ChhhHHHHCCccccCcCCCE---EEeccccCcChhChHHHccccc
Confidence 5777777777642210 111 11222 34778888888763
No 7
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=33.93 E-value=48 Score=19.86 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 039894 1 MIFTKTLLILLLAIILVLHNV 21 (159)
Q Consensus 1 ~~~~~~~~i~~la~~~~l~~~ 21 (159)
|||...-.|.+|+...++|.-
T Consensus 1 mi~a~i~yi~~l~~~f~iA~G 21 (32)
T 1vf5_E 1 MILGAVFYIVFIALFFGIAVG 21 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHH
Confidence 788888888888777777654
No 8
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=30.53 E-value=44 Score=21.60 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 039894 3 FTKTLLILLLAIILVLHNVV 22 (159)
Q Consensus 3 ~~~~~~i~~la~~~~l~~~l 22 (159)
|.|.-.+.++++++.|++.+
T Consensus 31 ~~k~gt~~~~~~ll~laif~ 50 (51)
T 1m56_D 31 MVTWAAVVIVAALIFLALAN 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34444555555566665544
No 9
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=29.06 E-value=34 Score=21.66 Aligned_cols=13 Identities=23% Similarity=0.802 Sum_probs=9.2
Q ss_pred CcccccCCCCCCC
Q 039894 108 MNCGKCGKKCKYN 120 (159)
Q Consensus 108 ~NCG~Cg~~C~~g 120 (159)
.+||.|-.+|+.+
T Consensus 9 ~~C~~C~~~CP~~ 21 (80)
T 1rgv_A 9 TACDACVEECPNE 21 (80)
T ss_dssp CCCCTTTTTCTTC
T ss_pred cChhhHHHHcChh
Confidence 3577777888764
No 10
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=29.03 E-value=45 Score=20.82 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039894 3 FTKTLLILLLAIILVLHNV 21 (159)
Q Consensus 3 ~~~~~~i~~la~~~~l~~~ 21 (159)
|.|.-.+.++++++.|+|.
T Consensus 23 ~~k~gt~~~~~~ll~maif 41 (43)
T 1qle_D 23 GATWVSILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554
No 11
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=21.42 E-value=1.9e+02 Score=25.94 Aligned_cols=51 Identities=24% Similarity=0.580 Sum_probs=27.8
Q ss_pred cccc--Cccccc------CCCCCCCC-cccCCcccCC------------CcCCCCCcccCCCCCCC-CccCCcee
Q 039894 104 LKDR--MNCGKC------GKKCKYNE-ICCNGKCVNP------------SFNRRHCGGCNNSCSNG-EFCVLGLC 156 (159)
Q Consensus 104 ~tD~--~NCG~C------g~~C~~g~-~CC~G~Cvdl------------~tD~~nCG~Cg~~C~~G-~~C~~G~C 156 (159)
.+|+ .+|+.- ...|..++ .|-.|.|+.. .+|..+|. ...|..+ ..|..|.|
T Consensus 155 gsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~--~~~C~~~~f~C~~g~C 227 (699)
T 1n7d_A 155 GSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA--VATCRPDEFQCSDGNC 227 (699)
T ss_dssp SSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSSCCCSTTCTTSSSCCSTTSCSSCSCC--CCCCCSSEEESSSSCE
T ss_pred CcccccccCCCcccccCCCCCCCCcceecCCCceEechhccCCCCCCCCCcccccCC--CcccCCCcEecCCCce
Confidence 3677 888642 12565544 4555666543 26788886 2344443 24555554
Done!