BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039896
         (243 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J03|A Chain A, Solution Structure Of A Putative Steroid-Binding Protein
           From Arabidopsis
          Length = 102

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 64/97 (65%)

Query: 40  FTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFT 99
           FTAE+L+ +NGTDES PI + I G VFDVT GKS YG GG Y+ FAG+DASRA    +  
Sbjct: 5   FTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKN 64

Query: 100 GDGLTDSLRGLSSTEVKSIVEWREFYFRSYTFVGKLV 136
            + ++ SL GL+  E+ ++ +W   +   Y  VG++V
Sbjct: 65  EEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 101


>pdb|1T0G|A Chain A, Hypothetical Protein At2g24940.1 From Arabidopsis Thaliana
           Has A Cytochrome B5 Like Fold
          Length = 109

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 64/97 (65%)

Query: 40  FTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFT 99
           FTAE+L+ +NGTDES PI + I G VFDVT GKS YG GG Y+ FAG+DASRA    +  
Sbjct: 12  FTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKN 71

Query: 100 GDGLTDSLRGLSSTEVKSIVEWREFYFRSYTFVGKLV 136
            + ++ SL GL+  E+ ++ +W   +   Y  VG++V
Sbjct: 72  EEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 108


>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
           Clostridium Acetobutylicum
          Length = 385

 Score = 31.2 bits (69), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 185 EGGEVWCDTGFPRLVQRPLEIALTGKMSKRCACFLEDQLDQQGLEVYEGCDY 236
           E  +   D+G P  +   LE  L  ++ +    FL+D+LD+ G+++Y   ++
Sbjct: 160 ELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF 211


>pdb|1KYV|A Chain A, Lumazine Synthase From S.pombe Bound To Riboflavin
 pdb|1KYV|B Chain B, Lumazine Synthase From S.pombe Bound To Riboflavin
 pdb|1KYV|C Chain C, Lumazine Synthase From S.pombe Bound To Riboflavin
 pdb|1KYV|D Chain D, Lumazine Synthase From S.pombe Bound To Riboflavin
 pdb|1KYV|E Chain E, Lumazine Synthase From S.pombe Bound To Riboflavin
 pdb|1KYX|A Chain A, Lumazine Synthase From S.pombe Bound To
           Carboxyethyllumazine
 pdb|1KYX|B Chain B, Lumazine Synthase From S.pombe Bound To
           Carboxyethyllumazine
 pdb|1KYX|C Chain C, Lumazine Synthase From S.pombe Bound To
           Carboxyethyllumazine
 pdb|1KYX|D Chain D, Lumazine Synthase From S.pombe Bound To
           Carboxyethyllumazine
 pdb|1KYX|E Chain E, Lumazine Synthase From S.pombe Bound To
           Carboxyethyllumazine
 pdb|1KYY|A Chain A, Lumazine Synthase From S.pombe Bound To
           Nitropyrimidinedione
 pdb|1KYY|B Chain B, Lumazine Synthase From S.pombe Bound To
           Nitropyrimidinedione
 pdb|1KYY|C Chain C, Lumazine Synthase From S.pombe Bound To
           Nitropyrimidinedione
 pdb|1KYY|D Chain D, Lumazine Synthase From S.pombe Bound To
           Nitropyrimidinedione
 pdb|1KYY|E Chain E, Lumazine Synthase From S.pombe Bound To
           Nitropyrimidinedione
          Length = 159

 Score = 28.1 bits (61), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 50  GTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFV 94
           G D  +P++LG+L +V +  +     G+ GG+NH  G D   A V
Sbjct: 110 GLDSGVPVILGLL-TVLNEEQALYRAGLNGGHNH--GNDWGSAAV 151


>pdb|2A57|A Chain A, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           6- Carboxyethyl-7-oxo-8-ribityllumazine
 pdb|2A57|B Chain B, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           6- Carboxyethyl-7-oxo-8-ribityllumazine
 pdb|2A57|C Chain C, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           6- Carboxyethyl-7-oxo-8-ribityllumazine
 pdb|2A57|D Chain D, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           6- Carboxyethyl-7-oxo-8-ribityllumazine
 pdb|2A57|E Chain E, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           6- Carboxyethyl-7-oxo-8-ribityllumazine
 pdb|2A58|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound
           Riboflavin
 pdb|2A58|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound
           Riboflavin
 pdb|2A58|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound
           Riboflavin
 pdb|2A58|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound
           Riboflavin
 pdb|2A58|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound
           Riboflavin
 pdb|2A59|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
 pdb|2A59|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
 pdb|2A59|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
 pdb|2A59|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
 pdb|2A59|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
          Length = 159

 Score = 27.7 bits (60), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 50  GTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFV 94
           G D  +P++LG+L +V +  +     G+ GG+NH  G D   A V
Sbjct: 110 GLDSGVPVILGLL-TVLNEEQALYRAGLNGGHNH--GNDWGSAAV 151


>pdb|1KZ4|A Chain A, Mutant Enzyme W63y Lumazine Synthase From S.pombe
 pdb|1KZ4|B Chain B, Mutant Enzyme W63y Lumazine Synthase From S.pombe
 pdb|1KZ4|C Chain C, Mutant Enzyme W63y Lumazine Synthase From S.pombe
 pdb|1KZ4|D Chain D, Mutant Enzyme W63y Lumazine Synthase From S.pombe
 pdb|1KZ4|E Chain E, Mutant Enzyme W63y Lumazine Synthase From S.pombe
          Length = 159

 Score = 27.7 bits (60), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 50  GTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFV 94
           G D  +P++LG+L +V +  +     G+ GG+NH  G D   A V
Sbjct: 110 GLDSGVPVILGLL-TVLNEEQALYRAGLNGGHNH--GNDWGSAAV 151


>pdb|1KZ1|A Chain A, Mutant Enzyme W27g Lumazine Synthase From S.pombe
 pdb|1KZ1|B Chain B, Mutant Enzyme W27g Lumazine Synthase From S.pombe
 pdb|1KZ1|C Chain C, Mutant Enzyme W27g Lumazine Synthase From S.pombe
 pdb|1KZ1|D Chain D, Mutant Enzyme W27g Lumazine Synthase From S.pombe
 pdb|1KZ1|E Chain E, Mutant Enzyme W27g Lumazine Synthase From S.pombe
          Length = 159

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 50  GTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFV 94
           G D  +P++LG+L +V +  +     G+ GG+NH  G D   A V
Sbjct: 110 GLDSGVPVILGLL-TVLNEEQALYRAGLNGGHNH--GNDWGSAAV 151


>pdb|1MB1|A Chain A, Mbp1 From Saccharomyces Cerevisiae
          Length = 130

 Score = 26.9 bits (58), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 129 YTFV---GKLVGRYYDNQGNATKYLKGAEAKAARGAQLLEKQKAEEAKQ 174
           Y F+   G ++ R  D+  NAT  LK A    A+  ++LEK+  +E  +
Sbjct: 16  YEFIHSTGSIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHE 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,270,118
Number of Sequences: 62578
Number of extensions: 311602
Number of successful extensions: 773
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 762
Number of HSP's gapped (non-prelim): 16
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)