Query 039896
Match_columns 243
No_of_seqs 231 out of 811
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1108 Predicted heme/steroid 100.0 8E-77 1.7E-81 525.6 15.5 199 37-243 59-279 (281)
2 KOG1110 Putative steroid membr 100.0 5.4E-42 1.2E-46 293.9 12.1 147 2-152 4-166 (183)
3 PF00173 Cyt-b5: Cytochrome b5 99.5 1.2E-14 2.7E-19 106.2 6.2 73 39-135 1-75 (76)
4 COG4892 Predicted heme/steroid 99.4 1.8E-13 3.8E-18 102.7 4.5 56 37-95 1-57 (81)
5 KOG0537 Cytochrome b5 [Energy 99.0 8.6E-11 1.9E-15 96.3 2.7 54 36-94 3-59 (124)
6 KOG0536 Flavohemoprotein b5+b5 99.0 2.4E-10 5.2E-15 95.1 4.5 56 36-95 66-123 (145)
7 COG5274 CYB5 Cytochrome b invo 98.5 8.1E-08 1.7E-12 82.4 4.7 61 35-99 47-109 (164)
8 PLN03199 delta6-acyl-lipid des 98.3 6.2E-07 1.4E-11 87.7 4.4 56 35-95 21-77 (485)
9 PLN03198 delta6-acyl-lipid des 98.2 9.1E-07 2E-11 87.6 3.3 55 37-95 103-158 (526)
10 PLN02252 nitrate reductase [NA 97.9 5.1E-06 1.1E-10 86.8 2.8 55 37-95 517-573 (888)
11 KOG4232 Delta 6-fatty acid des 97.4 5.2E-05 1.1E-09 73.4 0.9 59 35-99 5-66 (430)
12 KOG4576 Sulfite oxidase, heme- 93.7 0.046 1E-06 46.4 2.4 46 36-84 78-123 (167)
13 PF07277 SapC: SapC; InterPro 53.3 18 0.00039 32.3 3.9 28 137-164 117-144 (221)
14 PF14901 Jiv90: Cleavage induc 49.8 11 0.00024 29.9 1.8 15 56-70 56-70 (94)
15 COG0133 TrpB Tryptophan syntha 36.3 75 0.0016 31.0 5.3 62 108-176 164-225 (396)
16 PF11346 DUF3149: Protein of u 33.6 54 0.0012 22.4 2.9 21 1-21 1-21 (42)
17 PRK15418 transcriptional regul 29.6 67 0.0014 30.1 3.8 30 110-147 226-255 (318)
18 PF04198 Sugar-bind: Putative 27.7 38 0.00083 30.5 1.8 21 128-148 177-197 (255)
19 PRK06549 acetyl-CoA carboxylas 26.6 42 0.00091 27.9 1.7 14 57-70 5-18 (130)
20 smart00831 Cation_ATPase_N Cat 23.4 84 0.0018 21.7 2.5 21 4-24 41-61 (64)
21 PF12596 Tnp_P_element_C: 87kD 21.6 56 0.0012 26.5 1.5 30 107-136 71-101 (106)
22 PHA02310 hypothetical protein 21.5 75 0.0016 26.7 2.2 40 38-79 72-111 (130)
23 TIGR01683 thiS thiamine biosyn 20.7 1.5E+02 0.0032 20.9 3.4 30 37-67 11-40 (64)
24 PF09356 Phage_BR0599: Phage c 20.5 28 0.00061 26.4 -0.4 16 227-242 46-61 (80)
25 PF04272 Phospholamban: Phosph 20.5 1.1E+02 0.0023 21.6 2.5 18 11-28 33-50 (52)
No 1
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=100.00 E-value=8e-77 Score=525.57 Aligned_cols=199 Identities=51% Similarity=0.941 Sum_probs=192.6
Q ss_pred CCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCccccccCCchhHhhhcCCCCCCCCCCCCCCCCHHHHh
Q 039896 37 QRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSSTEVK 116 (243)
Q Consensus 37 ~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~Y~~fAGrDaSraf~t~~f~~~~l~dd~~~L~~~e~~ 116 (243)
.++||+|||++|||+++++||||||+|.|||||+|++|||||++|++||||||||||++|+|++.++.||+.+|+++||.
T Consensus 59 k~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~sYnhFaGRDASrAFvsGdf~e~gl~d~v~gLs~dEll 138 (281)
T KOG1108|consen 59 KILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCSYNHFAGRDASRAFVSGDFEEPGLADDVLGLSPDELL 138 (281)
T ss_pred ceeeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCCcccccccccchheecccCCCCcchhhhccCCHHHHh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccceEeeEeccccccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCeEEec----
Q 039896 117 SIVEWREFYFRSYTFVGKLVGRYYDNQGNATKYLKGAEAKAARGAQLLEKQKAEEAKQPGCNSRWSQDEGGEVWCD---- 192 (243)
Q Consensus 117 ~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Cn~~ws~~~G~~vwC~---- 192 (243)
+|.+|+.||.+.|++||+|+|||||++|+||++|+++++++++|.+.+++|+.|+++||||||||||+ |||||||
T Consensus 139 si~dWrsFY~k~Y~~vGrv~gryYds~G~pT~~lt~v~a~~era~e~~k~q~~e~a~fp~CNsewsq~-G~RvWCstkgg 217 (281)
T KOG1108|consen 139 SIADWRSFYQKDYVYVGRVIGRYYDSKGAPTPYLTKVLALLERAREAKKQQEEERARFPPCNSEWSQE-GTRVWCSTKGG 217 (281)
T ss_pred hhhhhhhhhhcccceeeEEeeeeecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhcc-CceEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ------CCcccccccchhhhccCCCCceeeeecC------------CCCCCCCCcccCCCcccCCcccC
Q 039896 193 ------TGFPRLVQRPLEIALTGKMSKRCACFLE------------DQLDQQGLEVYEGCDYLAQTCRV 243 (243)
Q Consensus 193 ------~GvPR~~~~p~~~~~~g~~~~rCaCv~~------------~~l~~~~l~~y~gC~~~a~~C~v 243 (243)
+|||||||+|+ .+++|||||+. ++||| +|++|+||+|+|.+|++
T Consensus 218 gver~wigyprkLy~pg------~k~frCaCVp~~~~~e~~~~~nrgdlDh-~L~~y~~C~P~a~~C~~ 279 (281)
T KOG1108|consen 218 GVERSWIGYPRKLYSPG------NKSFRCACVPDAELDEIDAGGNRGDLDH-MLKPYDNCEPQARECFY 279 (281)
T ss_pred CeEEEEeeccccccCCC------CCCcceEeccccCCCcCCCCCCcccccc-ccccCCCCCcccceeee
Confidence 39999999995 79999999995 57777 89999999999999974
No 2
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=100.00 E-value=5.4e-42 Score=293.87 Aligned_cols=147 Identities=33% Similarity=0.522 Sum_probs=129.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhhc----cC----------cc--cccCCCCCcHHHHhcccCCCCCCcEEEEEcCeE
Q 039896 2 VVKKIISSPFVAIAVLVTLVAVIFRFS----PK----------LL--LSRQQRLFTAEELALHNGTDESIPILLGILGSV 65 (243)
Q Consensus 2 ~~~~~~~SP~~~i~~~~~~~a~~~~~~----~~----------~~--~~~~~r~fT~eEL~~ydG~~~~~~iylAI~G~V 65 (243)
++.+++.+|++..++.++++..+++.. +. .| ..|+.+.||++||++|||.++++||||||+|+|
T Consensus 4 l~~~~~~tpl~~al~~~~l~~~~kl~~~~~r~~~~~~~~~~~~~P~~~~P~~~dfT~eEL~~ydGs~~d~~Il~AI~G~V 83 (183)
T KOG1110|consen 4 LAPKVFFTPLALALLIFLLFVGLKLSRFKFRRDSEKSDGSTEEPPKESLPKVRDFTVEELRQYDGSDPDKPILLAINGKV 83 (183)
T ss_pred cchhhhhhhHHHHHHHHHHHhheeeeeeeccccccccccCCCCCCccCCCcccccCHHHHHhcCCCCCCCceEEEecceE
Confidence 467889999999998888877765532 10 11 135568999999999999998899999999999
Q ss_pred EeccccCccccCCCccccccCCchhHhhhcCCCCCCCCCCCCCCCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCC
Q 039896 66 FDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGN 145 (243)
Q Consensus 66 yDVT~g~~~Ygpgg~Y~~fAGrDaSraf~t~~f~~~~l~dd~~~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~ 145 (243)
||||+|+.||||||+|..||||||||+|++++|+..+.+||++||+..||++|++|+++|+.||++||+|+. +.++
T Consensus 84 YDVT~Gr~FYGp~GpY~~fAG~DASR~La~~s~d~~d~~ddlsdL~a~e~eal~eWE~~fk~KY~~VG~L~~----~~~e 159 (183)
T KOG1110|consen 84 YDVTRGREFYGPGGPYSLFAGKDASRGLAKMSFDLSDETDDLSDLTAEELEALNEWETKFKAKYPVVGRLVK----KGEE 159 (183)
T ss_pred EEecCCccccCCCCCchhhcccchHHHHHhcccchhhccccccccCHHHHHHHHHHHHHHhhcCceeEEeec----CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 6677
Q ss_pred cchhhhh
Q 039896 146 ATKYLKG 152 (243)
Q Consensus 146 pt~~~~~ 152 (243)
++++...
T Consensus 160 ~~~~s~~ 166 (183)
T KOG1110|consen 160 NEEYSPE 166 (183)
T ss_pred cccCCcc
Confidence 7766533
No 3
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.54 E-value=1.2e-14 Score=106.25 Aligned_cols=73 Identities=40% Similarity=0.459 Sum_probs=61.2
Q ss_pred CCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCC--ccccccCCchhHhhhcCCCCCCCCCCCCCCCCHHHHh
Q 039896 39 LFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGG--GYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSSTEVK 116 (243)
Q Consensus 39 ~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg--~Y~~fAGrDaSraf~t~~f~~~~l~dd~~~L~~~e~~ 116 (243)
.||.+||++|| + +.++||+|+|+|||||... ..+||| .+..+||+|+|.+| +..
T Consensus 1 ~~t~~el~~h~--~-~~~~~v~i~g~VYDvt~~~-~~hpgg~~~~~~~aG~D~T~~f--------------------~~~ 56 (76)
T PF00173_consen 1 VYTWEELAKHN--K-KGDCWVIIDGKVYDVTDFL-DRHPGGADILKKYAGRDATDAF--------------------EEA 56 (76)
T ss_dssp EEEHHHHTTTE--E-TTEEEEEETTEEEECTTTT-TTSTTTSHHHHTTTTSBTHHHH--------------------HHH
T ss_pred CCCHHHHhhhC--C-CCCEEEEECCEEccccccc-ccccchhHHHHHhccccccHHH--------------------hhc
Confidence 48999999999 2 3579999999999999864 468888 78999999999999 233
Q ss_pred hHHHHHHHHhccceEeeEe
Q 039896 117 SIVEWREFYFRSYTFVGKL 135 (243)
Q Consensus 117 ~L~~W~~~y~~kY~~VG~L 135 (243)
....|...+..+|.+||+|
T Consensus 57 ~h~~~~~~~l~~~~~vG~l 75 (76)
T PF00173_consen 57 FHSWWAEKCLEKYYKVGYL 75 (76)
T ss_dssp THHHHHHHHHHGCGEEEEE
T ss_pred cCcHHHHHHccCCCEEEEe
Confidence 3447888888889999997
No 4
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=99.41 E-value=1.8e-13 Score=102.72 Aligned_cols=56 Identities=38% Similarity=0.570 Sum_probs=47.0
Q ss_pred CCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCccccc-cCCchhHhhhc
Q 039896 37 QRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHF-AGRDASRAFVS 95 (243)
Q Consensus 37 ~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~Y~~f-AGrDaSraf~t 95 (243)
.|.||+|||++|||.+. |+|||++|+|||||... .|+.|-..... ||+|.|.+|..
T Consensus 1 mrefTLEELs~ynG~nG--paYiA~~G~VYDvS~s~-~W~dGtHqglhsaG~DLs~~~~~ 57 (81)
T COG4892 1 MREFTLEELSKYNGENG--PAYIAVNGTVYDVSLSP-SWGDGTHQGLHSAGKDLSSEFNS 57 (81)
T ss_pred CceecHHHHHhhcCCCC--CeEEEECCEEEeeccCc-ccCCCccccccccchhHHHHHhh
Confidence 47899999999999974 89999999999999765 56777666655 99999988863
No 5
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.05 E-value=8.6e-11 Score=96.33 Aligned_cols=54 Identities=37% Similarity=0.500 Sum_probs=46.1
Q ss_pred CCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccC-ccccCCC--ccccccCCchhHhhh
Q 039896 36 QQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGK-SHYGVGG--GYNHFAGRDASRAFV 94 (243)
Q Consensus 36 ~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~-~~Ygpgg--~Y~~fAGrDaSraf~ 94 (243)
..+.||++|.++||..+ .+||.|+|+|||||+.. + +||| .....||+|||.+|.
T Consensus 3 ~~k~~~~~EV~kHn~~~---d~Wvii~gkVYDvT~Fl~e--HPGG~~vLl~~AGkDaT~~F~ 59 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKD---DCWVIIHGKVYDVTSFLDE--HPGGEDVLLEYAGKDATEAFE 59 (124)
T ss_pred ccccccHHHHHhhcCCC---CeEEEECCEEEeccchhhh--CCChHHHHHHHhchhhHHhcc
Confidence 35789999999999765 49999999999999873 4 5666 578999999999995
No 6
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.02 E-value=2.4e-10 Score=95.07 Aligned_cols=56 Identities=38% Similarity=0.504 Sum_probs=49.6
Q ss_pred CCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc--cccccCCchhHhhhc
Q 039896 36 QQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG--YNHFAGRDASRAFVS 95 (243)
Q Consensus 36 ~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~--Y~~fAGrDaSraf~t 95 (243)
.+...|.+||++||-.++ +|++|+|+|||||...+ |+|||. ....||+|||..|.+
T Consensus 66 ~~i~vt~~El~KH~~~dD---cW~~i~G~VYnVt~Yl~-fHPgG~d~lmk~aGrD~T~~Fnk 123 (145)
T KOG0536|consen 66 SPIPVTAEELKKHNKKDD---CWIAIRGKVYNVTAYLD-FHPGGVDELMKHAGRDATKLFNK 123 (145)
T ss_pred CCCccCHHHHHhhCCccc---eEEEEcCEEEecccccc-cCCCCHHHHHHhcCcchHHHHHH
Confidence 467899999999998874 99999999999999864 699996 668999999999975
No 7
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=98.54 E-value=8.1e-08 Score=82.37 Aligned_cols=61 Identities=33% Similarity=0.419 Sum_probs=50.4
Q ss_pred cCCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCC--ccccccCCchhHhhhcCCCC
Q 039896 35 RQQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGG--GYNHFAGRDASRAFVSGNFT 99 (243)
Q Consensus 35 ~~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg--~Y~~fAGrDaSraf~t~~f~ 99 (243)
+.+..++.+|+.+|++.++ +||+|+|+|||||.... +|||| -....+|+|||.+|.-...+
T Consensus 47 ~~~~~~~~eev~~h~~~~d---~~ivi~g~VyDvs~fl~-~HPGGe~ii~~~~g~Dat~~f~~~~~~ 109 (164)
T COG5274 47 ESPKPITAEEVAKHNKSED---CWIVINGKVYDVSQFLD-EHPGGEDIIKDTAGKDATKAFNFLHHS 109 (164)
T ss_pred CccccccHHHHHHhcCccc---eEEEEcCEEEEhhhccc-cCCCcceeehhccCchhhhhhcccccc
Confidence 4578899999999999874 99999999999998732 46666 46799999999999765554
No 8
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=98.28 E-value=6.2e-07 Score=87.72 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=47.8
Q ss_pred cCCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc-cccccCCchhHhhhc
Q 039896 35 RQQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG-YNHFAGRDASRAFVS 95 (243)
Q Consensus 35 ~~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~-Y~~fAGrDaSraf~t 95 (243)
.+++.||.+|+++|+..+ .+||+|+|+|||||+.. -+|||. ...++|+|||.+|..
T Consensus 21 ~~~~~~s~~ev~~h~~~~---~~wi~i~g~vYDvt~f~--~HPGG~~i~~~aG~DaT~~F~~ 77 (485)
T PLN03199 21 EKPQKISWQEVKKHASPD---DAWIIHQNKVYDVSNWH--DHPGGAVIFTHAGDDMTDIFAA 77 (485)
T ss_pred ccCCccCHHHHHhhCCCC---CeEEEECCEEEcCCCcC--cCCCchHHHhhCCCChhHHHHH
Confidence 457899999999998875 38999999999999874 488886 347899999999964
No 9
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=98.19 E-value=9.1e-07 Score=87.64 Aligned_cols=55 Identities=29% Similarity=0.435 Sum_probs=46.1
Q ss_pred CCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc-cccccCCchhHhhhc
Q 039896 37 QRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG-YNHFAGRDASRAFVS 95 (243)
Q Consensus 37 ~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~-Y~~fAGrDaSraf~t 95 (243)
.+.+|.+|+++|+..++ +||+|+|+|||||+..+ .+|||. ...++|+|||.+|..
T Consensus 103 ~~~~t~~ev~~H~~~~d---~Wivi~gkVYDvT~fl~-~HPGG~~i~~~aG~DaT~~F~~ 158 (526)
T PLN03198 103 SKSHLLSEVAAHNKPND---CWIVIKNKVYDVSDFAA-EHPGGSVISTYFGRDGTDAFSS 158 (526)
T ss_pred cCcCCHHHHHhhCCCCC---eEEEECCEEEecHHHHH-hCCCchHHHHhcCCcHhHHHHH
Confidence 35999999999998763 99999999999998632 378886 447999999999964
No 10
>PLN02252 nitrate reductase [NADPH]
Probab=97.92 E-value=5.1e-06 Score=86.85 Aligned_cols=55 Identities=27% Similarity=0.380 Sum_probs=46.9
Q ss_pred CCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCC--ccccccCCchhHhhhc
Q 039896 37 QRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGG--GYNHFAGRDASRAFVS 95 (243)
Q Consensus 37 ~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg--~Y~~fAGrDaSraf~t 95 (243)
.+.||.+||++|+..+ .+||+|+|+|||||.... .|||| ....+||+|||.+|..
T Consensus 517 ~~~~t~~ev~~h~~~~---~~Wivi~g~VYDvT~fl~-~HPGG~~~I~~~aG~DaT~~F~~ 573 (888)
T PLN02252 517 SKQYTMSEVRKHNSED---SCWIVVHGHVYDCTRFLK-DHPGGADSILINAGTDCTEEFDA 573 (888)
T ss_pred cceeCHHHHHhhCcCC---CeEEEECCEEEeCHHHHH-HCCChHHHHHhhcCCCcHHHHhh
Confidence 4899999999999865 389999999999998632 37888 4779999999999964
No 11
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=97.38 E-value=5.2e-05 Score=73.44 Aligned_cols=59 Identities=31% Similarity=0.430 Sum_probs=50.0
Q ss_pred cCCCCCcHHHHhcccCCCCCCcEEEEEcCeEEecccc-CccccCCCc--cccccCCchhHhhhcCCCC
Q 039896 35 RQQRLFTAEELALHNGTDESIPILLGILGSVFDVTKG-KSHYGVGGG--YNHFAGRDASRAFVSGNFT 99 (243)
Q Consensus 35 ~~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g-~~~Ygpgg~--Y~~fAGrDaSraf~t~~f~ 99 (243)
+.++.+|-|+++++|+.++ .|++|.| |||+|.- ++ +|||+ ....+|.|||.+|....-+
T Consensus 5 ~~~~~~~we~~~~~~~~~~---~W~~id~-vYd~s~~~~~--HPGG~~~I~~~~g~DaTdaF~AfH~~ 66 (430)
T KOG4232|consen 5 TLPTTFSWEGKRKHDKAEG---LWLVIDG-VYDISDWIKR--HPGGSRVIEHYAGQDATDAFEAFHPG 66 (430)
T ss_pred CCceeeeccchhhccCCCc---eEEEeec-cccHHHHHHh--CCCchhHHHHhcCCccchHHHHhCCC
Confidence 3477899999999999974 8999999 9999986 44 58884 7899999999999876544
No 12
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=93.71 E-value=0.046 Score=46.40 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=36.9
Q ss_pred CCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCccccc
Q 039896 36 QQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHF 84 (243)
Q Consensus 36 ~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~Y~~f 84 (243)
.-..+|.||+++|+... .+|||-..--|||||..-+ -+|||.-..+
T Consensus 78 ~l~iY~~EEV~~H~s~e--~rIWVTyg~gVyDVTdFv~-~HPGGdKill 123 (167)
T KOG4576|consen 78 SLHIYTKEEVSSHTSPE--TRIWVTYGSGVYDVTDFVD-LHPGGDKILL 123 (167)
T ss_pred hccchhHHHHHhcCCCc--cceEEEecCcceeHHHHHH-hCCCcceeee
Confidence 45789999999999876 4799999999999998743 2788864433
No 13
>PF07277 SapC: SapC; InterPro: IPR010836 This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance [].
Probab=53.35 E-value=18 Score=32.26 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=22.0
Q ss_pred cccccCCCCcchhhhhHHHHHHHHHHHH
Q 039896 137 GRYYDNQGNATKYLKGAEAKAARGAQLL 164 (243)
Q Consensus 137 ~r~yd~~G~pt~~~~~~~~~~~~~~~~~ 164 (243)
.+++|++|+||++++++.+.+.+-.+..
T Consensus 117 ~~LFd~~G~~T~~l~~~~~~L~~~~~~~ 144 (221)
T PF07277_consen 117 EPLFDEDGEPTEYLQQVLNFLQQYQQGR 144 (221)
T ss_pred ccCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 3689999999999999888766555443
No 14
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=49.77 E-value=11 Score=29.93 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=13.2
Q ss_pred cEEEEEcCeEEeccc
Q 039896 56 PILLGILGSVFDVTK 70 (243)
Q Consensus 56 ~iylAI~G~VyDVT~ 70 (243)
..|+-.+|+|||+|.
T Consensus 56 ~yy~c~~g~VyDiTe 70 (94)
T PF14901_consen 56 TYYACMDGKVYDITE 70 (94)
T ss_pred EEEEEcCceEEehhh
Confidence 478889999999996
No 15
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=36.31 E-value=75 Score=31.03 Aligned_cols=62 Identities=11% Similarity=0.182 Sum_probs=42.0
Q ss_pred CCCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhCCC
Q 039896 108 RGLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNATKYLKGAEAKAARGAQLLEKQKAEEAKQPG 176 (243)
Q Consensus 108 ~~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 176 (243)
..|.+.--+.|++|...++..|.++|.++| +.==||. .++.++.+- ++.++|..+.+-+.|.
T Consensus 164 ~TLKDA~neAlRdWvtn~~~ThY~iGsa~G----PHPyP~i-VRdFQ~vIG--~E~k~Qile~egrlPD 225 (396)
T COG0133 164 GTLKDAINEALRDWVTNVEDTHYLIGSAAG----PHPYPTI-VRDFQSVIG--EEAKAQILEKEGRLPD 225 (396)
T ss_pred chHHHHHHHHHHHHHhccccceEEEeeccC----CCCchHH-HHHHHHHHh--HHHHHHHHHHhCCCCC
Confidence 346666678999999999999999999998 2222332 345555543 4445555555567775
No 16
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=33.62 E-value=54 Score=22.38 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=15.9
Q ss_pred CchhhhhhhHHHHHHHHHHHH
Q 039896 1 MVVKKIISSPFVAIAVLVTLV 21 (243)
Q Consensus 1 ~~~~~~~~SP~~~i~~~~~~~ 21 (243)
|..+++++||+++..++++++
T Consensus 1 ~~w~~LF~s~vGL~Sl~vI~~ 21 (42)
T PF11346_consen 1 EAWKDLFGSDVGLMSLIVIVF 21 (42)
T ss_pred ChHHHHhcChHHHHHHHHHHH
Confidence 456788999999887776553
No 17
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=29.58 E-value=67 Score=30.09 Aligned_cols=30 Identities=27% Similarity=0.446 Sum_probs=25.4
Q ss_pred CCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcc
Q 039896 110 LSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNAT 147 (243)
Q Consensus 110 L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt 147 (243)
+++.+++.|.+ --.||-+.++|||.+|++.
T Consensus 226 l~~~~~~~L~~--------~gAVGdi~g~f~D~~G~~v 255 (318)
T PRK15418 226 ISQGEQLMIGR--------KGAVGDILGYFFDADGELV 255 (318)
T ss_pred CCHHHHHHHHH--------CCceEEEeeeEECCCCCCc
Confidence 77888777754 4699999999999999987
No 18
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=27.66 E-value=38 Score=30.50 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=18.0
Q ss_pred cceEeeEeccccccCCCCcch
Q 039896 128 SYTFVGKLVGRYYDNQGNATK 148 (243)
Q Consensus 128 kY~~VG~Li~r~yd~~G~pt~ 148 (243)
+--.||-+.++|||.+|++..
T Consensus 177 ~~gAVGdi~~~f~d~~G~~v~ 197 (255)
T PF04198_consen 177 EKGAVGDICGRFFDADGNIVD 197 (255)
T ss_dssp HTTEEEEETTEEEETTS-EEE
T ss_pred HCCcEEEhhchhhcCCCCCcc
Confidence 458999999999999999886
No 19
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=26.55 E-value=42 Score=27.85 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=12.1
Q ss_pred EEEEEcCeEEeccc
Q 039896 57 ILLGILGSVFDVTK 70 (243)
Q Consensus 57 iylAI~G~VyDVT~ 70 (243)
.=|-|||++|||+=
T Consensus 5 ~~itvng~~y~V~v 18 (130)
T PRK06549 5 FKITIDGKEYLVEM 18 (130)
T ss_pred EEEEECCEEEEEEE
Confidence 55889999999984
No 20
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=23.37 E-value=84 Score=21.69 Aligned_cols=21 Identities=10% Similarity=0.360 Sum_probs=14.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 039896 4 KKIISSPFVAIAVLVTLVAVI 24 (243)
Q Consensus 4 ~~~~~SP~~~i~~~~~~~a~~ 24 (243)
-+-+..|+++++++++++.++
T Consensus 41 l~~~~~p~~~iL~~~a~is~~ 61 (64)
T smart00831 41 LRQFHNPLIYILLAAAVLSAL 61 (64)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 345668888888887766554
No 21
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=21.58 E-value=56 Score=26.53 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCCCCHHHHhhHHHHHHH-HhccceEeeEec
Q 039896 107 LRGLSSTEVKSIVEWREF-YFRSYTFVGKLV 136 (243)
Q Consensus 107 ~~~L~~~e~~~L~~W~~~-y~~kY~~VG~Li 136 (243)
+.++.+.-|+.|..|+.+ |+.|||..|.+.
T Consensus 71 ~~e~e~d~l~YiaGyVa~k~~~k~p~L~~~t 101 (106)
T PF12596_consen 71 LDEIEEDGLEYIAGYVAKKFRNKYPNLGDYT 101 (106)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCchhhee
Confidence 344666777888999966 999999998764
No 22
>PHA02310 hypothetical protein
Probab=21.52 E-value=75 Score=26.71 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=27.3
Q ss_pred CCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCC
Q 039896 38 RLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGG 79 (243)
Q Consensus 38 r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg 79 (243)
+.||.-|...-+-.. .+=.|..+|++|||.+..++|.-+|
T Consensus 72 ~~f~~~~i~~i~Rg~--agD~lvwnGkry~v~g~~dW~~QDG 111 (130)
T PHA02310 72 MIFANFEMVDLDRDM--AGDQFIWTGRVFQLESQGSWFYQDG 111 (130)
T ss_pred EEEecceeeeccccC--CCCEEEEcCcEEEEccccceeecCC
Confidence 566655555443222 1236889999999999888887665
No 23
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=20.66 E-value=1.5e+02 Score=20.86 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=23.9
Q ss_pred CCCCcHHHHhcccCCCCCCcEEEEEcCeEEe
Q 039896 37 QRLFTAEELALHNGTDESIPILLGILGSVFD 67 (243)
Q Consensus 37 ~r~fT~eEL~~ydG~~~~~~iylAI~G~VyD 67 (243)
+...|..+|.+.-+-++ ..+-|++||++-.
T Consensus 11 ~~~~tv~~ll~~l~~~~-~~v~v~vN~~iv~ 40 (64)
T TIGR01683 11 EDGLTLAALLESLGLDP-RRVAVAVNGEIVP 40 (64)
T ss_pred CCCCcHHHHHHHcCCCC-CeEEEEECCEEcC
Confidence 34578999998887764 6799999999954
No 24
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=20.52 E-value=28 Score=26.40 Aligned_cols=16 Identities=44% Similarity=0.943 Sum_probs=14.3
Q ss_pred CCcccCCCcccCCccc
Q 039896 227 GLEVYEGCDYLAQTCR 242 (243)
Q Consensus 227 ~l~~y~gC~~~a~~C~ 242 (243)
.+..|+||+.+..+|.
T Consensus 46 ~v~l~~GCDkt~~tC~ 61 (80)
T PF09356_consen 46 TVTLYPGCDKTFATCR 61 (80)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4799999999999994
No 25
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=20.49 E-value=1.1e+02 Score=21.62 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 039896 11 FVAIAVLVTLVAVIFRFS 28 (243)
Q Consensus 11 ~~~i~~~~~~~a~~~~~~ 28 (243)
+|+-++++|++++|.++.
T Consensus 33 vnfclilicllli~iiv~ 50 (52)
T PF04272_consen 33 VNFCLILICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578888889988887653
Done!