Query 039896
Match_columns 243
No_of_seqs 231 out of 811
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:24:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j03_A Putative steroid bindin 100.0 2E-36 6.8E-41 238.3 10.0 100 37-136 2-101 (102)
2 1x3x_A Cytochrome B5; hemoprot 99.4 2.3E-13 7.7E-18 102.2 4.3 54 37-94 3-59 (82)
3 1cyo_A Cytochrome B5; electron 99.4 2.1E-13 7.3E-18 104.9 3.9 56 36-95 3-60 (93)
4 1cxy_A Cytochrome B5; helix, b 99.3 6.4E-13 2.2E-17 101.5 5.1 57 37-97 7-65 (90)
5 2ibj_A Cytochrome B5, CYTB5; F 99.3 4.2E-13 1.4E-17 101.9 3.7 56 36-95 5-62 (88)
6 3ner_A Cytochrome B5 type B; h 99.3 6.1E-13 2.1E-17 102.3 4.1 57 35-95 7-65 (92)
7 3lf5_A Cytochrome B5 reductase 99.3 6.3E-13 2.2E-17 101.5 2.7 55 37-95 5-61 (88)
8 1hko_A Cytochrome B5; electron 99.3 1E-12 3.5E-17 103.3 3.0 56 36-95 7-64 (104)
9 2keo_A Probable E3 ubiquitin-p 99.2 1.1E-12 3.7E-17 104.6 1.2 56 36-95 22-79 (112)
10 1mj4_A Sulfite oxidase; cytoch 99.0 6.6E-11 2.3E-15 88.8 2.9 55 36-94 3-59 (82)
11 1kbi_A Cytochrome B2, L-LCR; f 98.7 4.5E-09 1.5E-13 101.8 3.7 57 35-95 6-64 (511)
12 1sox_A Sulfite oxidase; oxidor 98.3 2.4E-07 8.2E-12 89.0 4.4 54 37-94 4-59 (466)
13 1wy1_A Hypothetical protein PH 30.2 64 0.0022 26.7 4.8 50 109-163 78-128 (172)
14 3tr4_A Inorganic pyrophosphata 29.9 73 0.0025 26.7 5.1 31 105-135 123-157 (178)
15 2g2d_A ATP:cobalamin adenosylt 27.1 68 0.0023 27.0 4.4 51 109-163 91-142 (193)
16 1woz_A 177AA long conserved hy 26.0 76 0.0026 26.4 4.5 51 109-163 76-127 (177)
17 1wvt_A Hypothetical protein ST 25.5 74 0.0025 26.4 4.3 51 109-163 74-125 (172)
18 1nog_A Conserved hypothetical 23.8 69 0.0024 26.6 3.9 51 109-163 77-128 (177)
19 1rty_A YVQK protein; all alpha 23.5 79 0.0027 26.6 4.2 51 109-163 84-135 (193)
20 3ci3_A Cobalamin adenosyltrans 23.2 78 0.0027 26.7 4.1 50 109-162 92-142 (194)
21 2idx_A COB(I)yrinic acid A,C-d 22.2 79 0.0027 26.7 3.9 49 109-161 90-139 (196)
22 2ah6_A BH1595, unknown conserv 21.5 81 0.0028 27.0 3.9 50 109-162 97-147 (208)
23 1jdm_A Sarcolipin; helix, memb 21.3 77 0.0026 19.4 2.6 18 11-28 10-27 (31)
24 2nt8_A Cobalamin adenosyltrans 20.3 87 0.003 27.1 3.9 50 109-162 121-171 (223)
No 1
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=100.00 E-value=2e-36 Score=238.25 Aligned_cols=100 Identities=46% Similarity=0.755 Sum_probs=96.4
Q ss_pred CCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCccccccCCchhHhhhcCCCCCCCCCCCCCCCCHHHHh
Q 039896 37 QRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSSTEVK 116 (243)
Q Consensus 37 ~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~Y~~fAGrDaSraf~t~~f~~~~l~dd~~~L~~~e~~ 116 (243)
++.||++||++|||.+++++|||||+|+|||||+++.||||||+|+.|||+|||++|++++++++.+++|+++|+++|++
T Consensus 2 ~~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~~~~~AG~DaT~~f~~~~~~~~~l~~dl~~L~~~e~~ 81 (102)
T 1j03_A 2 PMEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEIN 81 (102)
T ss_dssp CCCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSSTTTTTTTSBCHHHHHHTCCCSSSCCSSCSSCCHHHHH
T ss_pred CcccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCcccccccchHHHHHHHcCCChhhccCcccCCCHHHHH
Confidence 57899999999999986678999999999999999889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccceEeeEec
Q 039896 117 SIVEWREFYFRSYTFVGKLV 136 (243)
Q Consensus 117 ~L~~W~~~y~~kY~~VG~Li 136 (243)
+|++|++||++||++||+|+
T Consensus 82 ~l~~W~~~f~~kY~~VG~l~ 101 (102)
T 1j03_A 82 TLNDWETKFEAKYPVVGRVV 101 (102)
T ss_dssp HHHHHHHHHHTTSCEEECCC
T ss_pred HHHHHHHHHhccCCeeeEEe
Confidence 99999999999999999997
No 2
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.38 E-value=2.3e-13 Score=102.24 Aligned_cols=54 Identities=30% Similarity=0.326 Sum_probs=47.0
Q ss_pred CCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCC-ccccccCCchhHh--hh
Q 039896 37 QRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGG-GYNHFAGRDASRA--FV 94 (243)
Q Consensus 37 ~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg-~Y~~fAGrDaSra--f~ 94 (243)
.+.||.+||++||+.+ .+||+|+|+|||||+... ++||| .+..+||+|||++ |.
T Consensus 3 ~~~~t~~ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~i~~~aG~D~T~~~~F~ 59 (82)
T 1x3x_A 3 DKKYTKEEVAKHNTQN---DLWIIYDGEVHDMTSFYK-EHPGGKVILNKAGQDATSVLKTL 59 (82)
T ss_dssp SCEECHHHHHTCEETT---EEEEEETTEEEECGGGGG-GCTTGGGGGGGTTSBCHHHHHHS
T ss_pred CCccCHHHHHhhCCCC---CEEEEECCEEEECCcchh-hCcChhhhhhhCCCCCchhhhhh
Confidence 4789999999999976 399999999999998753 68888 5668999999999 64
No 3
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.37 E-value=2.1e-13 Score=104.87 Aligned_cols=56 Identities=30% Similarity=0.379 Sum_probs=48.8
Q ss_pred CCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc--cccccCCchhHhhhc
Q 039896 36 QQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG--YNHFAGRDASRAFVS 95 (243)
Q Consensus 36 ~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~--Y~~fAGrDaSraf~t 95 (243)
..+.||.+||++||+.+ ++||+|+|+|||||.... ++|||. +..+||+|||++|..
T Consensus 3 ~~~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~ 60 (93)
T 1cyo_A 3 AVKYYTLEEIQKHNNSK---STWLILHYKVYDLTKFLE-EHPGGEEVLREQAGGDATENFED 60 (93)
T ss_dssp SCCEECHHHHTTCEETT---EEEEEETTEEEECTTTTT-TCTTCSHHHHHHTTSBCHHHHHH
T ss_pred CCCccCHHHHHhhCCCC---CEEEEECCEEEECCCcch-hCcChHHHHHHhcCccchHHHHH
Confidence 35789999999999875 499999999999998753 789997 567999999999974
No 4
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.35 E-value=6.4e-13 Score=101.47 Aligned_cols=57 Identities=25% Similarity=0.392 Sum_probs=49.3
Q ss_pred CCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc--cccccCCchhHhhhcCC
Q 039896 37 QRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG--YNHFAGRDASRAFVSGN 97 (243)
Q Consensus 37 ~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~--Y~~fAGrDaSraf~t~~ 97 (243)
.+.||.+||++||+.+ ++||+|+|+|||||+... ++|||. +..+||+|||++|..+.
T Consensus 7 ~~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~~~ 65 (90)
T 1cxy_A 7 LPVFTLEQVAEHHSPD---DCWMAIHGKVYDLTPYVP-NHPGPAGMMLVWCGQESTEAWETKS 65 (90)
T ss_dssp CCBCCHHHHTTCEETT---EEEEEETTEEEECTTTGG-GCCSSTTTTGGGTTSBCHHHHHHTT
T ss_pred CCCcCHHHHHHhcCCC---CEEEEECCEEEECccchh-hCcChHHHHHHHCCcchhHHHhhcc
Confidence 5789999999999975 499999999999998753 689986 67999999999998543
No 5
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.34 E-value=4.2e-13 Score=101.90 Aligned_cols=56 Identities=32% Similarity=0.367 Sum_probs=48.4
Q ss_pred CCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc--cccccCCchhHhhhc
Q 039896 36 QQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG--YNHFAGRDASRAFVS 95 (243)
Q Consensus 36 ~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~--Y~~fAGrDaSraf~t 95 (243)
..+.||.+||++||+.+ ++||+|+|+|||||+... ++|||. ...+||+|||++|..
T Consensus 5 ~~~~~t~~ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~ 62 (88)
T 2ibj_A 5 DVKYFTRAEVAKNNTKD---KNWFIIHNNVYDVTAFLN-EHPGGEEVLIEQAGKDATEHFED 62 (88)
T ss_dssp CCCEECHHHHHTSEETT---EEEEEETTEEEECGGGTT-TCTTCSHHHHTTTTEECHHHHHH
T ss_pred cCCccCHHHHHHhCCCC---CEEEEECCEEEECCcchh-hCcCHHHHHHHhCCCcchHHHHH
Confidence 45789999999999864 599999999999998743 689997 457999999999974
No 6
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.33 E-value=6.1e-13 Score=102.32 Aligned_cols=57 Identities=33% Similarity=0.390 Sum_probs=49.4
Q ss_pred cCCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc--cccccCCchhHhhhc
Q 039896 35 RQQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG--YNHFAGRDASRAFVS 95 (243)
Q Consensus 35 ~~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~--Y~~fAGrDaSraf~t 95 (243)
+..+.||.+||++||+.+ ++||+|+|+|||||+.. .++|||. +..+||+|||.+|..
T Consensus 7 ~~~~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~-~~HPGG~~~l~~~aG~DaT~~F~~ 65 (92)
T 3ner_A 7 TSVTYYRLEEVAKRNSLK---ELWLVIHGRVYDVTRFL-NEHPGGEEVLLEQAGVDASESFED 65 (92)
T ss_dssp CCSCEECHHHHTTCEETT---EEEEEETTEEEECGGGT-TTCTTCSHHHHTTTTSBCHHHHHH
T ss_pred CCCCeeCHHHHHhhCCCC---CEEEEECCEEEEccccc-ccCCCHHHHHHHhcCCcchHHHHH
Confidence 346889999999999875 59999999999999875 3689997 568999999999974
No 7
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.30 E-value=6.3e-13 Score=101.47 Aligned_cols=55 Identities=33% Similarity=0.388 Sum_probs=48.4
Q ss_pred CCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc--cccccCCchhHhhhc
Q 039896 37 QRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG--YNHFAGRDASRAFVS 95 (243)
Q Consensus 37 ~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~--Y~~fAGrDaSraf~t 95 (243)
.+.||.+||++||+.+ ++||+|+|+|||||+... ++|||. +..+||+|||.+|..
T Consensus 5 l~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~l~~~aG~DaT~~F~~ 61 (88)
T 3lf5_A 5 LIEVTEEELKKHNKKD---DCWICIRGFVYNVSPYME-YHPGGEDELMRAAGSDGTELFDQ 61 (88)
T ss_dssp SEEECHHHHHHCEETT---EEEEEETTEEEECGGGTT-TCTTCHHHHHTTTTEECHHHHHH
T ss_pred CCEeCHHHHHhhCCCC---CEEEEECCEEEECccchh-hCcChhhhhhhcCCCcchHHHHH
Confidence 4679999999999875 599999999999998753 589996 679999999999974
No 8
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.28 E-value=1e-12 Score=103.31 Aligned_cols=56 Identities=30% Similarity=0.379 Sum_probs=48.5
Q ss_pred CCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc--cccccCCchhHhhhc
Q 039896 36 QQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG--YNHFAGRDASRAFVS 95 (243)
Q Consensus 36 ~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~--Y~~fAGrDaSraf~t 95 (243)
..+.||.+||++||+.+ .+||+|+|+|||||.... ++|||. ...+||+|||.+|..
T Consensus 7 ~~~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aGkDaT~~F~~ 64 (104)
T 1hko_A 7 AVKYYTLEEIQKHNNSK---STWLILHYKVYDLTKFLE-EHPGGEEVLREQAGGDATENFED 64 (104)
T ss_dssp CCEEECHHHHHHCBSSS---SBEEEETTEEEEHHHHSS-SSSSCSHHHHTTCSEECHHHHTT
T ss_pred cCCccCHHHHHHhcCCC---CEEEEECCEEEECCcchh-hCcChHHHHHHhcCccchHHHHH
Confidence 45789999999999876 499999999999998753 789997 468999999999963
No 9
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.24 E-value=1.1e-12 Score=104.64 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=48.7
Q ss_pred CCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc--cccccCCchhHhhhc
Q 039896 36 QQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG--YNHFAGRDASRAFVS 95 (243)
Q Consensus 36 ~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~--Y~~fAGrDaSraf~t 95 (243)
..+.||.+||++||+.+ ++||+|+|+|||||+... ++|||. +..+||+|||.+|..
T Consensus 22 ~~~~~t~~Ev~~h~~~~---d~wvvi~G~VYDVT~fl~-~HPGG~~~l~~~aGkDaT~~F~~ 79 (112)
T 2keo_A 22 KVTLVRIADLENHNNDG---GFWTVIDGKVYDIKDFQT-QSLTENSILAQFAGEDPVVALEA 79 (112)
T ss_dssp CCCEECHHHHHHHHHHT---CCEEEETTEEEEHHHHHH-HHTSTTSTTGGGTTSCHHHHHHH
T ss_pred CCCccCHHHHHHhcCCC---CEEEEECCEEEECCcchh-hCCCchhhhhhhCCccchHHHhH
Confidence 35789999999999875 499999999999998743 588886 679999999999976
No 10
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.04 E-value=6.6e-11 Score=88.81 Aligned_cols=55 Identities=27% Similarity=0.357 Sum_probs=44.5
Q ss_pred CCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc--cccccCCchhHhhh
Q 039896 36 QQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG--YNHFAGRDASRAFV 94 (243)
Q Consensus 36 ~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~--Y~~fAGrDaSraf~ 94 (243)
..+.||.+||++||+.++ ++||+|+|+|||||... ..+|||. ...+||+|+ .+|.
T Consensus 3 ~~~~~t~~ev~~h~~~~~--~~wv~i~g~VYDvt~f~-~~HPGG~~~il~~aG~Dt-~~f~ 59 (82)
T 1mj4_A 3 STHIYTKEEVSSHTSPET--GIWVTLGSEVFDVTEFV-DLHPGGPSKLMLAAGGPL-EPFW 59 (82)
T ss_dssp CCCBCCCC-CTTCEETTT--EEEEEETTEEEECTTTG-GGSTTCHHHHHTTTTSBS-HHHH
T ss_pred CCCccCHHHHHHhcCCCC--CeEEEECCEEEEchHHH-HhCCCHhHHHHHHcCCCh-HHHH
Confidence 357899999999998763 69999999999999875 3689994 457999995 5775
No 11
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=98.72 E-value=4.5e-09 Score=101.76 Aligned_cols=57 Identities=28% Similarity=0.364 Sum_probs=49.2
Q ss_pred cCCCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCCc--cccccCCchhHhhhc
Q 039896 35 RQQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGG--YNHFAGRDASRAFVS 95 (243)
Q Consensus 35 ~~~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg~--Y~~fAGrDaSraf~t 95 (243)
+..+.||.+||++||+.+ .+||+|+|+|||||... .+||||. ...+||+|||.+|..
T Consensus 6 ~~~~~~t~~ev~~h~~~~---~~wv~i~g~VYDvt~f~-~~HPGG~~~i~~~aG~DaT~~f~~ 64 (511)
T 1kbi_A 6 MNKQKISPAEVAKHNKPD---DCWVVINGYVYDLTRFL-PNHPGGQDVIKFNAGKDVTAIFEP 64 (511)
T ss_dssp SCSCCBCTTHHHHCEETT---EEEEEETTEEEECTTTG-GGCTTCHHHHHTTTTSBCHHHHGG
T ss_pred CCCCccCHHHHHHhCCCC---CEEEEECCEEEECCcch-hhCcChHHHHHHHcCcchhhhhhh
Confidence 346889999999999976 49999999999999875 4789996 457999999999974
No 12
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=98.34 E-value=2.4e-07 Score=89.05 Aligned_cols=54 Identities=28% Similarity=0.271 Sum_probs=45.8
Q ss_pred CCCCcHHHHhcccCCCCCCcEEEEEcCeEEeccccCccccCCC--ccccccCCchhHhhh
Q 039896 37 QRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGG--GYNHFAGRDASRAFV 94 (243)
Q Consensus 37 ~r~fT~eEL~~ydG~~~~~~iylAI~G~VyDVT~g~~~Ygpgg--~Y~~fAGrDaSraf~ 94 (243)
.+.||.+|+++||..++ ++||+|+|+|||||+.. ..|||| ....+||+| |.+|-
T Consensus 4 ~~~~t~~Ev~~H~~~~d--~~Wvii~g~VYDvT~fl-~~HPGG~~~il~~aG~D-T~~f~ 59 (466)
T 1sox_A 4 YPEYTREEVGRHRSPEE--RVWVTHGTDVFDVTDFV-ELHPGGPDKILLAAGGA-LEPFW 59 (466)
T ss_dssp CCEECHHHHTTCEETTT--EEEEEETTEEEECTTTT-TTSTTCHHHHGGGTTSB-SHHHH
T ss_pred CCeeCHHHHHHhcCCCC--ceEEEECCEEEechHhH-hhCcCCcccchhhcCCc-ccccc
Confidence 57899999999998753 49999999999999875 348999 467889999 88885
No 13
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=30.21 E-value=64 Score=26.68 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=35.8
Q ss_pred CCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcchh-hhhHHHHHHHHHHH
Q 039896 109 GLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNATKY-LKGAEAKAARGAQL 163 (243)
Q Consensus 109 ~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~-~~~~~~~~~~~~~~ 163 (243)
.++++++..|++|.+.|.++++ . ..|.=+.|.|... ++-+.....|+++.
T Consensus 78 ~i~~~~v~~LE~~id~~~~~lp-l----~~FILPgg~~~aA~Lh~aRtv~RRAER~ 128 (172)
T 1wy1_A 78 GISEERIKWLEGLISRYEEMVN-L----KSFVLPGGTLESAKLDVCRTIARRAERK 128 (172)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCS-C----CSSCCSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhCC-C----cCeEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999998 4 3344478887754 55555555555443
No 14
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=29.91 E-value=73 Score=26.66 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCCCCCCHHHHhhHHHHHHHHhc----cceEeeEe
Q 039896 105 DSLRGLSSTEVKSIVEWREFYFR----SYTFVGKL 135 (243)
Q Consensus 105 dd~~~L~~~e~~~L~~W~~~y~~----kY~~VG~L 135 (243)
.|+++|.+..++.+++|-..|+. |...++-.
T Consensus 123 ~di~dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~ 157 (178)
T 3tr4_A 123 QSLKDISSLLLDAISHFFERYKDLEPNKWAKVKGW 157 (178)
T ss_dssp CSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEE
T ss_pred CchhhCCHHHHHHHHHHHHHHcCcCCCceeEeccC
Confidence 47889999999999999999974 44444433
No 15
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=27.13 E-value=68 Score=27.04 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=36.2
Q ss_pred CCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcchh-hhhHHHHHHHHHHH
Q 039896 109 GLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNATKY-LKGAEAKAARGAQL 163 (243)
Q Consensus 109 ~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~-~~~~~~~~~~~~~~ 163 (243)
.++++++..|+.|.+.|.++++.....| =+.|.|... ++-+.....|+++.
T Consensus 91 ~i~~~~v~~LE~~id~~~~~l~pl~~FI----LPGG~~~aA~LH~aRtv~RRAER~ 142 (193)
T 2g2d_A 91 RIAQSYIDRLEGWCDAYNAGLPALKSFV----LPGGSPLSALLHVARTVVRRAERS 142 (193)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCCCSSCE----ESCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCcee----eCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999987654333 367877754 55555555555443
No 16
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=26.01 E-value=76 Score=26.36 Aligned_cols=51 Identities=20% Similarity=0.057 Sum_probs=36.3
Q ss_pred CCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcchh-hhhHHHHHHHHHHH
Q 039896 109 GLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNATKY-LKGAEAKAARGAQL 163 (243)
Q Consensus 109 ~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~-~~~~~~~~~~~~~~ 163 (243)
.+++++++.|++|.+.|.++++.....|= +.|.|... ++-+.....|+++.
T Consensus 76 ~i~~~~v~~LE~~id~~~~~l~~l~~FIL----PGg~~~aA~LH~aRtv~RRAER~ 127 (177)
T 1woz_A 76 KIDEKYVKWLEERTVEYRKESGPVKLFVI----PGGSEEASVLHVTRSVARRVERN 127 (177)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCCEEEEE----SCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceec----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999876654443 67877744 55555555555443
No 17
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=25.48 E-value=74 Score=26.35 Aligned_cols=51 Identities=24% Similarity=0.209 Sum_probs=35.5
Q ss_pred CCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcchh-hhhHHHHHHHHHHH
Q 039896 109 GLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNATKY-LKGAEAKAARGAQL 163 (243)
Q Consensus 109 ~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~-~~~~~~~~~~~~~~ 163 (243)
.++++++..|++|.+.|.++++.....| =+.|.|... ++-+.....|+++.
T Consensus 74 ~i~~~~v~~LE~~id~~~~~l~pl~~FI----LPgg~~~aA~Lh~aRtv~RRAER~ 125 (172)
T 1wvt_A 74 NFSDEKVKGIEELITNYSKELEPLRNFV----LPGGHIASSFLHLARAVCRRAERS 125 (172)
T ss_dssp CCCTHHHHHHHHHHHHHHTTSCCCCSCE----ESCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCccee----eCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999987654433 367877744 55555555554443
No 18
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=23.83 E-value=69 Score=26.64 Aligned_cols=51 Identities=10% Similarity=-0.019 Sum_probs=35.8
Q ss_pred CCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcchh-hhhHHHHHHHHHHH
Q 039896 109 GLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNATKY-LKGAEAKAARGAQL 163 (243)
Q Consensus 109 ~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~-~~~~~~~~~~~~~~ 163 (243)
.++++++..|++|.+.|.++++.... |.=+.|.|... ++-+.....|+++.
T Consensus 77 ~i~~~~v~~LE~~id~~~~~l~~l~~----FILPGg~~~aA~LH~aRtv~RRAER~ 128 (177)
T 1nog_A 77 TVTREMIDYLEARVKEMKAEIGKIEL----FVVPGGSVESASLHMARAVSRRLERR 128 (177)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCCCS----CBCSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCc----eeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999998865543 33367877754 55555555554443
No 19
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=23.48 E-value=79 Score=26.64 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=35.7
Q ss_pred CCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcchh-hhhHHHHHHHHHHH
Q 039896 109 GLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNATKY-LKGAEAKAARGAQL 163 (243)
Q Consensus 109 ~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~-~~~~~~~~~~~~~~ 163 (243)
.++++++..|+.|.+.|.++++.... |.=+.|.|... ++-+.....|+++.
T Consensus 84 ~i~~~~v~~LE~~Id~~~~~l~pl~~----FILPGG~~~aA~LH~aRtv~RRAER~ 135 (193)
T 1rty_A 84 KLTEESVSFLETRIDAYTAEAPELKK----FILPGGSKCASLLHIARTITRRAERR 135 (193)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCCS----CBCSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCc----eeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999876544 33368887754 55555544444443
No 20
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=23.20 E-value=78 Score=26.69 Aligned_cols=50 Identities=16% Similarity=0.037 Sum_probs=35.4
Q ss_pred CCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcchh-hhhHHHHHHHHHH
Q 039896 109 GLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNATKY-LKGAEAKAARGAQ 162 (243)
Q Consensus 109 ~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~-~~~~~~~~~~~~~ 162 (243)
.++++++..|++|.+.|.++++.... |.=+.|.|... ++-+.....|+++
T Consensus 92 ~i~~~~v~~LE~~id~~~~~l~pl~~----FILPGG~~~aA~LH~aRtv~RRAER 142 (194)
T 3ci3_A 92 FKQEQPTVWLEEKIDNYTQVVPAVKK----FILPGGTQLASALHVARTITRRAER 142 (194)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCSS----CBCSCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCc----eeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998876543 33367877754 5555554444443
No 21
>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens}
Probab=22.25 E-value=79 Score=26.69 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=33.7
Q ss_pred CCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcchh-hhhHHHHHHHHH
Q 039896 109 GLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNATKY-LKGAEAKAARGA 161 (243)
Q Consensus 109 ~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~-~~~~~~~~~~~~ 161 (243)
.++++++..|+.|.+.|.++++.... |.=+.|.|... ++-+.....|++
T Consensus 90 ~i~~~~v~~LE~~Id~~~~~lppl~~----FILPGG~~~aA~LH~aRtv~RRAE 139 (196)
T 2idx_A 90 TFKAGPILELEQWIDKYTSQLPPLTA----FILPSGGKISSALHFCRAVCRRAE 139 (196)
T ss_dssp -CCSHHHHHHHHHHHHHHHTSCCCCS----CBCSCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCc----eEECCCCHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999985433 44478877754 444444444443
No 22
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=21.54 E-value=81 Score=26.99 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=35.1
Q ss_pred CCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcchh-hhhHHHHHHHHHH
Q 039896 109 GLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNATKY-LKGAEAKAARGAQ 162 (243)
Q Consensus 109 ~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~-~~~~~~~~~~~~~ 162 (243)
.++++++..|+.|.+.|.++++.....| =+.|.|... +.-+.....|+++
T Consensus 97 ~i~~~~v~~LE~~Id~~~~~l~pl~~FI----LPGG~~~aA~LHvaRTv~RRAER 147 (208)
T 2ah6_A 97 KAKQEIVDFLEQRIDAYIKEAPELERFI----LPGGSEAAASLHVCRTIARRAER 147 (208)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSCCCCSCE----ESCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCccee----eCCCCHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999987664433 367877754 4444444444443
No 23
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.26 E-value=77 Score=19.36 Aligned_cols=18 Identities=17% Similarity=0.229 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 039896 11 FVAIAVLVTLVAVIFRFS 28 (243)
Q Consensus 11 ~~~i~~~~~~~a~~~~~~ 28 (243)
+|+-++++++++++++++
T Consensus 10 ~NFt~vLI~vlLi~llVr 27 (31)
T 1jdm_A 10 LNFTIVLITVILMWLLVR 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578888888888886654
No 24
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=20.33 E-value=87 Score=27.10 Aligned_cols=50 Identities=16% Similarity=0.016 Sum_probs=35.2
Q ss_pred CCCHHHHhhHHHHHHHHhccceEeeEeccccccCCCCcchh-hhhHHHHHHHHHH
Q 039896 109 GLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYDNQGNATKY-LKGAEAKAARGAQ 162 (243)
Q Consensus 109 ~L~~~e~~~L~~W~~~y~~kY~~VG~Li~r~yd~~G~pt~~-~~~~~~~~~~~~~ 162 (243)
.+++++++.|++|.+.|.++++..... .=+.|.|... +.-+.....|+++
T Consensus 121 ~i~~~~v~~LE~~Id~~~~~lppl~~F----ILPGGs~~aA~LHvaRTv~RRAER 171 (223)
T 2nt8_A 121 FKQEQPTVWLEEKIDNYTQVVPAVKKF----ILPGGTQLASALHVARTITRRAER 171 (223)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCSSC----EESCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCce----EeCCCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998765433 3367877754 5555554444443
Done!