Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>039898
LEINERPLKRPLLDFEKLSISSSSGIEELKARKVFVQHVETATTSEANIDIVQSFVPNFT
DVLKTKSEERRLAFKKDNRHDQNLSKARQQQEVLAKNARFEQIWRSRKGHKEELHHKELR
EMCHFYDVVRVDGEEKSNEVQRDMSLEDQRLLSSYLPMLREFLPGAAAEIESDMWAYLSK
QDDYVYDYYAVNDDMNVDEDASSPFPLVQVDDEEFYDGPDESEYDSEDSNAEDNPRNEYP
DEISDEQEEEEEEEEEEEVDEDGVESKATENSEDESERAGIASRDIDRFLEDEIYYDDFE
NDDHCFDNLDNEENDADGEDWR

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039898
        (322 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2065764 - symbol:RDM4 "RNA-directed DNA methyl...   532  3.1e-51   1


>TAIR|locus:2065764 [details] [associations]
            symbol:RDM4 "RNA-directed DNA methylation 4" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006306 "DNA methylation" evidence=IGI;IMP] [GO:0006342
            "chromatin silencing" evidence=IGI;IMP] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IGI] [GO:0032502
            "developmental process" evidence=IGI] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IMP] [GO:0009791 "post-embryonic development"
            evidence=IMP] EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003700
            GO:GO:0009791 GO:GO:0006342 GO:GO:0006306 InterPro:IPR013883
            Pfam:PF08574 EMBL:BT005437 EMBL:AK117472 IPI:IPI00524414
            RefSeq:NP_180587.2 UniGene:At.38379 PaxDb:Q8GYP3 PRIDE:Q8GYP3
            EnsemblPlants:AT2G30280.1 GeneID:817578 KEGG:ath:AT2G30280
            TAIR:At2g30280 eggNOG:NOG284192 HOGENOM:HOG000005726
            InParanoid:Q8GYP3 OMA:PLLRECI PhylomeDB:Q8GYP3
            ProtClustDB:CLSN2679917 Genevestigator:Q8GYP3 Uniprot:Q8GYP3
        Length = 346

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 132/322 (40%), Positives = 176/322 (54%)

Query:     1 LEINERPLKRPLLDFEXXXXXXXXXXXXXXA-----RKVFVQHVETATTSEANIDIVQSF 55
             LEINERPLKRP LDF               A     +KV V+H+ET T SE   DI+ SF
Sbjct:    36 LEINERPLKRPTLDFSKLSISDSGERGPSVAEDVKPKKVLVRHLETVTDSETTADIIHSF 95

Query:    56 VP---NFTDVLKTKSEERRLAFKKDNRHDQNLSKARQQQEVLAKNARFEQIWRSRKGXXX 112
                  N     K K EER++AFKKDNR +Q L+K+ Q+Q++ ++NARFEQIWRSRKG   
Sbjct:    96 FESDHNEKSCSKGKFEERKIAFKKDNRKEQRLTKSVQKQQIASENARFEQIWRSRKGNKE 155

Query:   113 XXXXXXXREMCHFYDVVRVDGEEKSNEVQRDMSLEDQRLLSSYLPMLREFLPGAAAEIES 172
                     E CHF+DV+RVD EE+ +  Q   SLEDQ++L+S+LP+LRE +P AA EIE+
Sbjct:   156 GI-----HEKCHFFDVIRVDTEERRDNAQEFTSLEDQKMLASFLPLLRECIPTAAEEIEA 210

Query:   173 DMWAYLSKQXXXXXXXXXXXXXXXXXEDAS-SPFPLVQVDDEE-FYDGPDESEYDSEDSN 230
             D+ +  S                   ED+S + FPLV V+DEE F DG DES+YDSEDSN
Sbjct:   211 DIQS--SHTEEYVYDYYAVNEEMDISEDSSKNQFPLVIVEDEEEFCDGSDESDYDSEDSN 268

Query:   231 AEDNPRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKATENSEDESERAGIASRDIDRFL 290
             AED+P+                             S+A++ S+DE      + R +   L
Sbjct:   269 AEDHPKTDYPEEEEEEEEEDDDDDDDDESEEEK--SEASDESDDEET----SKRHVRSVL 322

Query:   291 EDEIYYDDFENDDHCFDNLDNE 312
              D+  +DD+  D + +   D E
Sbjct:   323 GDD-EFDDYAEDVYGYSESDEE 343


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.130   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      322       253   0.00083  114 3  11 23  0.39    34
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  196 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  22.99u 0.09s 23.08t   Elapsed:  00:00:21
  Total cpu time:  22.99u 0.09s 23.08t   Elapsed:  00:00:22
  Start:  Thu May  9 17:01:21 2013   End:  Thu May  9 17:01:43 2013

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