BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039898
         (322 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5U3I2|S7A6O_DANRE Probable RNA polymerase II nuclear localization protein SLC7A6OS
           OS=Danio rerio GN=slc7a6os PE=2 SV=1
          Length = 326

 Score = 36.2 bits (82), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 15/154 (9%)

Query: 109 GHKEELH--HKELREMCHFYDVVRVD--GEEKSNEVQRDMSLED-QRLLSSYLPMLREFL 163
           G  EE H  H E R+     +V   D   EE+  +V   M + D + +L + + M+RE L
Sbjct: 133 GGGEENHDSHAESRDGLPLGEVQVFDILHEEEDVKVPGKMVVSDPETILCNSVKMIREKL 192

Query: 164 PGAAAEIESDMWAYLSKQDDYVYD-YYAVNDDMNVDEDASSPFPLVQ----VDDEEFYDG 218
             + A + ++   +  K+DDYVYD YY         +D  S  P  Q    V DE  ++ 
Sbjct: 193 SVSGAGLGTE---HREKEDDYVYDLYYQETATPGWIQDILSVRPYSQEGELVPDEVAWE- 248

Query: 219 PDESEYDSEDSNAEDNPRNEYPDEISDEQEEEEE 252
            +E   D +D NAE N RN+YP+E S+   E EE
Sbjct: 249 -EEVYEDEDDENAEANWRNDYPEESSEGDSEGEE 281


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.129    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,715,608
Number of Sequences: 539616
Number of extensions: 6444090
Number of successful extensions: 138013
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1974
Number of HSP's successfully gapped in prelim test: 1623
Number of HSP's that attempted gapping in prelim test: 60646
Number of HSP's gapped (non-prelim): 31140
length of query: 322
length of database: 191,569,459
effective HSP length: 117
effective length of query: 205
effective length of database: 128,434,387
effective search space: 26329049335
effective search space used: 26329049335
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.1 bits)