Query 039898
Match_columns 322
No_of_seqs 131 out of 142
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 03:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08574 DUF1762: Protein of u 99.5 2.8E-14 6E-19 112.4 5.6 61 180-243 2-77 (77)
2 KOG4852 Uncharacterized conser 99.2 1E-12 2.2E-17 122.9 -0.3 161 34-244 43-206 (265)
3 PF06524 NOA36: NOA36 protein; 73.7 2.1 4.5E-05 41.9 1.9 8 238-245 268-275 (314)
4 PF04931 DNA_pol_phi: DNA poly 40.2 14 0.00031 40.2 1.4 7 286-292 708-714 (784)
5 KOG1832 HIV-1 Vpr-binding prot 38.6 16 0.00035 41.5 1.5 6 51-56 1218-1223(1516)
6 KOG1189 Global transcriptional 30.2 28 0.00061 38.8 1.6 23 230-252 889-911 (960)
7 KOG1189 Global transcriptional 27.1 28 0.00061 38.8 0.9 11 187-197 836-846 (960)
8 KOG2141 Protein involved in hi 17.2 51 0.0011 36.6 0.5 48 235-282 214-268 (822)
9 PF10185 Mesd: Chaperone for w 14.6 1.3E+02 0.0028 27.3 2.3 45 2-46 31-76 (158)
10 PF02724 CDC45: CDC45-like pro 13.6 70 0.0015 34.4 0.3 41 240-280 128-168 (622)
No 1
>PF08574 DUF1762: Protein of unknown function (DUF1762); InterPro: IPR013883 Iwr1 is involved in transcription from polymerase II promoters; it interacts with with most of the polymerase II subunits []. Deletion of this protein results in hypersensitivity to the K1 killer toxin []
Probab=99.50 E-value=2.8e-14 Score=112.39 Aligned_cols=61 Identities=43% Similarity=0.552 Sum_probs=37.7
Q ss_pred CCCCceEEEEEeecCCC---C------CcccCCCCCCc------ccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 039898 180 KQDDYVYDYYAVNDDMN---V------DEDASSPFPLV------QVDDEEFYDGPDESEYDSEDSNAEDNPRNEYPDEI 243 (322)
Q Consensus 180 ~e~dYVYDiY~~~~~~~---~------di~sv~~~~~~------lv~ded~~~~~ee~~~DddDSNaE~nwrNDYPDEe 243 (322)
.+.+||||||++..... + +|+.|..+... ++.+.+ ...+.+.|++|||||+|||||||+++
T Consensus 2 ~~~dYVYD~Y~~~~~~~~~~~~~~~~~~ig~l~~~~~~~~~~~~~~~~~~---~d~~~~~DdeDSNaE~~y~NDYPDeE 77 (77)
T PF08574_consen 2 SDDDYVYDVYYREDVPEDLETANVPPDDIGYLVIVEEDDDLWDDLYDDDD---DDEEWDDDDEDSNAENNYRNDYPDEE 77 (77)
T ss_pred CCCCEEEEEEEEcCCCCccccccCCccccceEEeecccchhhhhccCCCc---ccccCCCCcCcccCCCCCCCCCCCCC
Confidence 35799999999754421 1 33333322211 112211 11134689999999999999999985
No 2
>KOG4852 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1e-12 Score=122.91 Aligned_cols=161 Identities=18% Similarity=0.132 Sum_probs=89.8
Q ss_pred ceeEEEeeeecCccchhhhhhccccchhhhhhhhHHHHhhhcccchhhhhhhHHHHHHHHHhhccceeeeccccCCcccc
Q 039898 34 VFVQHVETATTSEANIDIVQSFVPNFTDVLKTKSEERRLAFKKDNRHDQNLSKARQQQEVLAKNARFEQIWRSRKGHKEE 113 (322)
Q Consensus 34 ~VFklv~TV~sqe~~~d~vqs~v~~~i~~~k~K~~e~~~rpk~~sk~~ri~sklR~~~~~~r~e~RYriV~~~R~~~~~~ 113 (322)
.||..|+||.++.. ++|++...-. |.--+..-+.+.+.. .-++..++|..+..-++.|+++++
T Consensus 43 ~v~~~va~v~d~~~---pvq~~~~eva---r~~De~nq~gfvk~~--alg~~~~~qEse~n~~~p~~~vsn--------- 105 (265)
T KOG4852|consen 43 AVLPSVAYVFDIYH---PVQIHDDEVA---RYNDEKNQIGFVKII--ALGDLALDQESEPNEARPDDEVSN--------- 105 (265)
T ss_pred hhhhhhhhhhcccc---hhhhhhHHHH---hcccchhhhhhHHHH--HhhhhccccccccCcCCchhhhcc---------
Confidence 89999999999988 8998864311 000000001111111 223344555555555666666665
Q ss_pred chhhhhcccceEEEEEeecCcccchhhhccCcchhhHHHhhcchhhhcccCCcchhhhhhhhhhccCCCCceEEEEEeec
Q 039898 114 LHHKELREMCHFYDVVRVDGEEKSNEVQRDMSLEDQRLLSSYLPMLREFLPGAAAEIESDMWAYLSKQDDYVYDYYAVND 193 (322)
Q Consensus 114 ~~~~~~~~~fqlyDiV~~E~e~k~~~~~~~~s~dpe~ILCN~~pMLRE~L~~s~~~~~~di~~~~~~e~dYVYDiY~~~~ 193 (322)
.++++..|+.+++....++..+ +.++.++.|| ..+|+|.= .++... ++.+.+-
T Consensus 106 --------~~rllq~v~~ege~~~aSag~~-SSd~dIv~~~-~eai~e~e----~~p~v~----~n~eqd~--------- 158 (265)
T KOG4852|consen 106 --------DERLLQNVYPEGEDDDASAGFG-SSDEDIVALG-EEAIIEVE----KSPFVS----WNDEQDQ--------- 158 (265)
T ss_pred --------cchhhcccCccCCCCchhhccC-CCCCchhhhh-HHHHHhhc----cCcccc----ccchhhh---------
Confidence 5667777776665554443344 7899999999 66777611 111100 0101000
Q ss_pred CCCC-CcccCCCCCC--cccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 039898 194 DMNV-DEDASSPFPL--VQVDDEEFYDGPDESEYDSEDSNAEDNPRNEYPDEIS 244 (322)
Q Consensus 194 ~~~~-di~sv~~~~~--~lv~ded~~~~~ee~~~DddDSNaE~nwrNDYPDEes 244 (322)
| .+....++.+ .++..++ + ..+.++|.+|||.|||||||||++|+
T Consensus 159 ---ie~~d~~~~~~~e~el~dldd--~-~~d~~DdedDsNsENnwrnDypeeEs 206 (265)
T KOG4852|consen 159 ---IEGSDDNGYHDVEEELGDLDD--R-LGDKSDDEDDSNSENNWRNDYPEEES 206 (265)
T ss_pred ---hcccccccccccchhhccccc--c-cCCcccccccccccccccccCccccc
Confidence 2 2222233322 2444443 2 23345677799999999999999987
No 3
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=73.65 E-value=2.1 Score=41.90 Aligned_cols=8 Identities=38% Similarity=0.389 Sum_probs=3.5
Q ss_pred CCCCCCCC
Q 039898 238 EYPDEISD 245 (322)
Q Consensus 238 DYPDEes~ 245 (322)
.|.+++++
T Consensus 268 ~~~~~~dd 275 (314)
T PF06524_consen 268 NYGYEDDD 275 (314)
T ss_pred CCcccccc
Confidence 34444433
No 4
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=40.20 E-value=14 Score=40.19 Aligned_cols=7 Identities=29% Similarity=0.515 Sum_probs=3.3
Q ss_pred hhhhhcc
Q 039898 286 IDRFLED 292 (322)
Q Consensus 286 ~~~~~~~ 292 (322)
++..|+.
T Consensus 708 l~~aL~~ 714 (784)
T PF04931_consen 708 LAKALGD 714 (784)
T ss_pred HHHHhcc
Confidence 3444554
No 5
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.57 E-value=16 Score=41.46 Aligned_cols=6 Identities=17% Similarity=0.573 Sum_probs=2.3
Q ss_pred hhhhcc
Q 039898 51 IVQSFV 56 (322)
Q Consensus 51 ~vqs~v 56 (322)
++++++
T Consensus 1218 ~l~tyl 1223 (1516)
T KOG1832|consen 1218 PLQTYL 1223 (1516)
T ss_pred HHHHhc
Confidence 344433
No 6
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=30.25 E-value=28 Score=38.76 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=13.2
Q ss_pred ccCCCCCCCCCCCCCCchhhhhh
Q 039898 230 NAEDNPRNEYPDEISDEQEEEEE 252 (322)
Q Consensus 230 NaE~nwrNDYPDEes~~dee~~~ 252 (322)
..+-++-.+++.++|+++++.++
T Consensus 889 ~~~y~psd~~v~~eS~ed~e~sE 911 (960)
T KOG1189|consen 889 DSAYEPSDDDVSDESDEDEEESE 911 (960)
T ss_pred cccCCccccCccccccccccccc
Confidence 34444557788777665544433
No 7
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=27.08 E-value=28 Score=38.79 Aligned_cols=11 Identities=9% Similarity=-0.013 Sum_probs=6.5
Q ss_pred EEEEeecCCCC
Q 039898 187 DYYAVNDDMNV 197 (322)
Q Consensus 187 DiY~~~~~~~~ 197 (322)
||-|.+....+
T Consensus 836 DI~y~Eg~~sL 846 (960)
T KOG1189|consen 836 DIKYTEGVQSL 846 (960)
T ss_pred cceeecccccc
Confidence 56666655554
No 8
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=17.20 E-value=51 Score=36.55 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCchhhhhhHHhhhhhccccc-------ccccccCccccccccCCc
Q 039898 235 PRNEYPDEISDEQEEEEEEEEEEEVDEDGV-------ESKATENSEDESERAGIA 282 (322)
Q Consensus 235 wrNDYPDEes~~dee~~~~~~~~~~~~~~~-------~~~~~~~~~~~sd~~~~~ 282 (322)
|-+.||+.+.+++++..+++++-.+++-.+ .++..+..++.+++++|+
T Consensus 214 ~~~Ee~e~e~~e~~e~~~~~~~sgs~~~~e~e~e~~~~de~~e~~~~~~d~d~i~ 268 (822)
T KOG2141|consen 214 EGEEEFEDEESEDSESGDEEDDSGSEDEDESEDEKDSVDEEEESEEDNEDDDGIS 268 (822)
T ss_pred ccccccccccccccccccccccccCcccchhhhhccchhhhhhhhhcccCCcccc
No 9
>PF10185 Mesd: Chaperone for wingless signalling and trafficking of LDL receptor; InterPro: IPR019330 Mesoderm development candidate 2 (also known as LDLR chaperone MESD)represents a set of highly conserved proteins found from nematodes to humans. It is a chaperone that specifically assists with the folding of beta-propeller/EGF modules within the family of low-density lipoprotein receptors (LDLRs). It also acts as a modulator of the Wnt pathway, since some LDLRs are coreceptors for the canonical Wnt pathway and is essential for specification of embryonic polarity and mesoderm induction []. The final C-terminal residues, KEDL, are the endoplasmic reticulum retention sequence as it is an ER protein specifically required for the intracellular trafficking of members of the low-density lipoprotein family of receptors (LDLRs) []. The N- and C-terminal sequences are predicted to adopt a random coil conformation, with the exception of an isolated predicted helix within the N-terminal region, The central folded domain flanked by natively unstructured regions is the necessary structure for facilitating maturation of LRP6 (Low-Density Lipoprotein Receptor-Related Protein 6 Maturation) []. ; PDB: 2RQM_A 2I9S_A 3OFH_A 2KGL_A 2RQK_A 2KMI_A 3OFG_A 3OFE_B 3OFF_A.
Probab=14.56 E-value=1.3e+02 Score=27.27 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=0.0
Q ss_pred CcCCCCCCCCcCCCccccccCCcc-hhhhhhccceeEEEeeeecCc
Q 039898 2 EINERPLKRPLLDFEKLSISSSSG-IEELKARKVFVQHVETATTSE 46 (322)
Q Consensus 2 eine~p~k~~~~d~~~ls~s~~~~-~~e~~~e~~VFklv~TV~sqe 46 (322)
|+=+.+-+-|-+||++|..++|.+ ....+.=+.|+-||.++....
T Consensus 31 elpe~~r~~p~~D~skld~~~pe~~lk~sKKGktlm~FV~~~~~ps 76 (158)
T PF10185_consen 31 ELPEHKRPPPPIDLSKLDPSDPESLLKMSKKGKTLMMFVKVSGDPS 76 (158)
T ss_dssp --SSS--S-SSTHCCHCSTSS-HHHHHHH-SSSEEEEEEEESSSTT
T ss_pred cCccccCCCCCCChhhcCccCHHHHHHHHhcCCceEEEEEeCCCCC
No 10
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=13.56 E-value=70 Score=34.39 Aligned_cols=41 Identities=24% Similarity=0.525 Sum_probs=0.0
Q ss_pred CCCCCCchhhhhhHHhhhhhcccccccccccCccccccccC
Q 039898 240 PDEISDEQEEEEEEEEEEEVDEDGVESKATENSEDESERAG 280 (322)
Q Consensus 240 PDEes~~dee~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~~ 280 (322)
|+++++++++++++++++++++-+.+.+..+.+..+.++..
T Consensus 128 ~~~~~~~~~~~~D~e~d~~~e~~~~~~~~~~~~d~d~~~~~ 168 (622)
T PF02724_consen 128 PEEEDDEDDEDSDDEDDEEDEESDSSDERDSWSDEDEDDDE 168 (622)
T ss_pred cccccccccccCccccccccccccccccccccccccccccc
Done!