Query 039898
Match_columns 322
No_of_seqs 131 out of 142
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 04:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kgl_A Mesoderm development ca 11.0 1.4E+02 0.0049 26.7 2.8 40 6-45 46-86 (195)
2 1pfj_A TFIIH basal transcripti 8.4 73 0.0025 26.0 -0.2 52 11-63 46-103 (108)
3 3ukw_C Bimax1 peptide; arm rep 7.2 1.3E+02 0.0045 18.8 0.7 7 6-12 6-12 (28)
4 1hul_A Interleukin-5; cytokine 7.0 39 0.0013 27.6 -2.3 50 16-66 25-74 (108)
5 1at3_A Herpes simplex virus ty 6.0 1.7E+02 0.006 27.0 1.1 26 15-40 125-150 (247)
6 2ayu_A Nucleosome assembly pro 5.0 1.6E+02 0.0054 29.0 0.2 16 151-167 192-207 (417)
7 2qud_A Coat protein; bacteriop 4.0 2.5E+02 0.0085 22.7 0.6 50 97-159 75-124 (125)
8 1vzv_A Assemblin, varicella-zo 4.0 2.7E+02 0.0091 25.4 0.8 26 15-40 106-131 (221)
9 2ful_A EIF-5, eukaryotic trans 3.6 2.4E+02 0.0081 24.3 0.1 19 267-285 159-177 (177)
10 3tpo_A Importin subunit alpha- 3.5 2.4E+02 0.0083 26.9 0.1 38 70-107 13-51 (529)
No 1
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=10.98 E-value=1.4e+02 Score=26.70 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCCCCcCCCccccccCCcchh-hhhhccceeEEEeeeecC
Q 039898 6 RPLKRPLLDFEKLSISSSSGIE-ELKARKVFVQHVETATTS 45 (322)
Q Consensus 6 ~p~k~~~~d~~~ls~s~~~~~~-e~~~e~~VFklv~TV~sq 45 (322)
..-+.|-+||++|..+++.+.- ..+.-+.|+-||.++-..
T Consensus 46 h~Rp~pp~D~skldp~~pe~~lk~sKKGk~lMmFV~v~g~~ 86 (195)
T 2kgl_A 46 HKRPSAPIDFSKLDPGKPESILKMTKKGKTLMMFVTVSGNP 86 (195)
T ss_dssp SCCCCCSCCCCCSSSSCCSHHHHHCCCCSCCEEEEESSSCS
T ss_pred cccCCCCCCcccCCccCHHHHHHHhhcCCceEEEEEeCCCC
Confidence 4445678999999999888743 466666899999887543
No 2
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=8.38 E-value=73 Score=26.01 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=30.2
Q ss_pred CcCCCccccccCCcchh------hhhhccceeEEEeeeecCccchhhhhhccccchhhh
Q 039898 11 PLLDFEKLSISSSSGIE------ELKARKVFVQHVETATTSEANIDIVQSFVPNFTDVL 63 (322)
Q Consensus 11 ~~~d~~~ls~s~~~~~~------e~~~e~~VFklv~TV~sqe~~~d~vqs~v~~~i~~~ 63 (322)
++-|+.+|-||-++.+. ....+..+|+|...- ..-...+.|+.+|++.|.++
T Consensus 46 ~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~~F~Ftn~~-~a~~erd~VKd~L~~~l~~~ 103 (108)
T 1pfj_A 46 MYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNES-TAVKERDAVKDLLQQLLPKF 103 (108)
T ss_dssp ETTTCCCEEECCSSSSSCEEEEECSSSCEEEEECCCSS-CTTHHHHHHHHHHHHHHHHH
T ss_pred ehhhhhcceeCCCCCccEEEEEEEeCCCceEEEEcCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 46677788888887732 222466678887643 12222345666666655533
No 3
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=7.20 E-value=1.3e+02 Score=18.78 Aligned_cols=7 Identities=86% Similarity=1.407 Sum_probs=3.8
Q ss_pred CCCCCCc
Q 039898 6 RPLKRPL 12 (322)
Q Consensus 6 ~p~k~~~ 12 (322)
||-|||+
T Consensus 6 rprkrpl 12 (28)
T 3ukw_C 6 RPRKRPL 12 (28)
T ss_dssp -CCCCCC
T ss_pred ccccCCc
Confidence 5666664
No 4
>1hul_A Interleukin-5; cytokine; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 3qt2_C* 3b5k_A
Probab=7.02 E-value=39 Score=27.58 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=36.6
Q ss_pred ccccccCCcchhhhhhccceeEEEeeeecCccchhhhhhccccchhhhhhh
Q 039898 16 EKLSISSSSGIEELKARKVFVQHVETATTSEANIDIVQSFVPNFTDVLKTK 66 (322)
Q Consensus 16 ~~ls~s~~~~~~e~~~e~~VFklv~TV~sqe~~~d~vqs~v~~~i~~~k~K 66 (322)
++|-|+.|....-.--.+.|||=++|+.+|.+..+.|-+++|+ ++.+|+.
T Consensus 25 ~tLrI~~P~hknhqlCieeiFqGi~tLkNqt~~g~~v~klFQN-lsliK~~ 74 (108)
T 1hul_A 25 ETLRIPVPVHKNHQLCTEEIFQGIGTLESQTVQGGTVERLFKN-LSLIKKY 74 (108)
T ss_dssp TTCEEEECSSSCGGGSHHHHHHHHHHHHTTSCCSSTHHHHHHH-HHHHHHH
T ss_pred CceEecCCCCcchhhHHHHHHHHHHHHhcCcchhhHHHHHHHh-HHHHHHH
Confidence 4677888877554445556999999999999888888888875 4434433
No 5
>1at3_A Herpes simplex virus type II protease; serine protease, viral protease, HSV2 protease; HET: DFP; 2.50A {Human herpesvirus 2} SCOP: b.57.1.1
Probab=6.05 E-value=1.7e+02 Score=27.02 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=14.0
Q ss_pred CccccccCCcchhhhhhccceeEEEe
Q 039898 15 FEKLSISSSSGIEELKARKVFVQHVE 40 (322)
Q Consensus 15 ~~~ls~s~~~~~~e~~~e~~VFklv~ 40 (322)
|-.||+|+-.-.........+|+||+
T Consensus 125 LPsLSLSS~~~~~~~~~~~~~F~HVa 150 (247)
T 1at3_A 125 LPSVSLSTKRRGDEVPPDRTLFAHVA 150 (247)
T ss_dssp SCEEEEEEC-------CCTTCEEEEE
T ss_pred cccceeecccCCCCCCCCCCccccee
Confidence 35677766543333346788999985
No 6
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=4.97 E-value=1.6e+02 Score=29.02 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=8.6
Q ss_pred HHhhcchhhhcccCCcc
Q 039898 151 LLSSYLPMLREFLPGAA 167 (322)
Q Consensus 151 ILCN~~pMLRE~L~~s~ 167 (322)
+|.| .|||.+.|+-.+
T Consensus 192 alkN-~~~lse~I~e~D 207 (417)
T 2ayu_A 192 ALEN-LPIVCDTITDRD 207 (417)
T ss_dssp HHHT-STTGGGTCCHHH
T ss_pred HHHc-ChHHHHhhhhhh
Confidence 3555 466666665433
No 7
>2qud_A Coat protein; bacteriophage, RNA-protein complex, capsid protein, RNA BIND protein; 1.60A {Pseudomonas phage PP7} PDB: 2qux_A 1dwn_A
Probab=4.01 E-value=2.5e+02 Score=22.69 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=26.1
Q ss_pred ccceeeeccccCCccccchhhhhcccceEEEEEeecCcccchhhhccCcchhhHHHhhcchhh
Q 039898 97 NARFEQIWRSRKGHKEELHHKELREMCHFYDVVRVDGEEKSNEVQRDMSLEDQRLLSSYLPML 159 (322)
Q Consensus 97 e~RYriV~~~R~~~~~~~~~~~~~~~fqlyDiV~~E~e~k~~~~~~~~s~dpe~ILCN~~pML 159 (322)
.-||.+||+|-...-... ...+.-.+||+. + . -.....-+.++.|.+||=
T Consensus 75 kvrytqvwshdvtivans---teasrkslydlt------k-s---lvatsqvedlvvnlvplg 124 (125)
T 2qud_A 75 KVRYTQVWSHDVTIVANS---TEASRKSLYDLT------K-S---LVATSQVEDLVVNLVPLG 124 (125)
T ss_dssp CEEEEEEEEEEEEEETTC---CHHHHHHHHHHH------H-H---HHHSHHHHHHHHHCCCSC
T ss_pred ceEEEEeeccceEEEecc---chHHHHHHHHHH------H-H---HHhHhhhhhheeeeeecC
Confidence 569999999874332100 001223455552 0 0 012234566788888873
No 8
>1vzv_A Assemblin, varicella-zoster virus protease; hydrolase, serine protease, viral protease, varicella-zoster coat protein; 3.00A {Human herpesvirus 3} SCOP: b.57.1.1
Probab=3.95 E-value=2.7e+02 Score=25.38 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=10.5
Q ss_pred CccccccCCcchhhhhhccceeEEEe
Q 039898 15 FEKLSISSSSGIEELKARKVFVQHVE 40 (322)
Q Consensus 15 ~~~ls~s~~~~~~e~~~e~~VFklv~ 40 (322)
|-.||+|+-.-..-......+|+||+
T Consensus 106 LPslSLSS~~~~~~e~~~~~~F~HVa 131 (221)
T 1vzv_A 106 LPSVSLSSKRLSPNEIPDGNFFTHVA 131 (221)
T ss_dssp SCEEEEECSCC----------CCEEE
T ss_pred cccceeecccCCCCCCCCCCccccee
Confidence 45677766432121123678999985
No 9
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=3.56 E-value=2.4e+02 Score=24.27 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=0.0
Q ss_pred ccccCccccccccCCcchh
Q 039898 267 KATENSEDESERAGIASRD 285 (322)
Q Consensus 267 ~~~~~~~~~sd~~~~~~~~ 285 (322)
+|+++++++.|...+.||+
T Consensus 159 eAEEEseeeeee~e~~~~~ 177 (177)
T 2ful_A 159 TAESDDDEEDDELERPHRD 177 (177)
T ss_dssp HCC---------C------
T ss_pred ccccccccccccccccCCC
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=3.48 E-value=2.4e+02 Score=26.90 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHhhhc-ccchhhhhhhHHHHHHHHHhhccceeeecccc
Q 039898 70 RRLAFK-KDNRHDQNLSKARQQQEVLAKNARFEQIWRSR 107 (322)
Q Consensus 70 ~~~rpk-~~sk~~ri~sklR~~~~~~r~e~RYriV~~~R 107 (322)
|..++| ++..++.+|.+-+..+-+.||..|-.++.++|
T Consensus 13 r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR 51 (529)
T 3tpo_A 13 RLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRR 51 (529)
T ss_dssp -------------------------------CCSCSCCC
T ss_pred HHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhcc
Done!