Query 039898
Match_columns 322
No_of_seqs 131 out of 142
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 04:27:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039898.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039898hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1at3a_ b.57.1.1 (A:) HSV-2 pr 7.9 59 0.0043 27.7 1.1 26 15-40 109-134 (231)
2 d1chua1 a.7.3.1 (A:423-533) L- 7.0 71 0.0051 23.3 1.1 9 234-242 92-100 (111)
3 d1hula_ a.26.1.2 (A:) Interleu 4.5 19 0.0014 27.5 -3.7 43 16-58 25-67 (108)
4 d1el6a_ d.182.1.1 (A:) Basepla 4.0 1.4E+02 0.01 24.9 1.2 38 10-47 51-88 (208)
5 d1dwna_ d.85.1.1 (A:) PP7 coat 3.9 1.2E+02 0.0088 22.6 0.6 50 97-159 77-126 (127)
6 d1vzva_ b.57.1.1 (A:) VZV prot 3.9 1.3E+02 0.0093 25.3 0.8 25 16-40 107-131 (221)
7 d1neka1 a.7.3.1 (A:451-588) Su 3.7 1.2E+02 0.0089 22.8 0.5 11 233-243 89-99 (138)
8 d2pbka1 b.57.1.1 (A:3-230) KSH 2.7 1.8E+02 0.013 24.4 0.6 26 15-40 108-134 (228)
9 d2zkda1 b.122.1.12 (A:405-613) 2.7 2.7E+02 0.019 22.9 1.7 14 181-194 150-164 (209)
10 d1h7sa1 d.14.1.3 (A:232-365) D 2.4 1E+02 0.0075 23.4 -1.4 9 3-11 61-69 (134)
No 1
>d1at3a_ b.57.1.1 (A:) HSV-2 protease {Herpes simplex virus type 2 [TaxId: 10310]}
Probab=7.86 E-value=59 Score=27.69 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=14.0
Q ss_pred CccccccCCcchhhhhhccceeEEEe
Q 039898 15 FEKLSISSSSGIEELKARKVFVQHVE 40 (322)
Q Consensus 15 ~~~ls~s~~~~~~e~~~e~~VFklv~ 40 (322)
|-.||+|+--......++..+|+||+
T Consensus 109 lPslSLSS~~~~~~~~p~~~fF~HVs 134 (231)
T d1at3a_ 109 LPSVSLSTKRRGDEVPPDRTLFAHVA 134 (231)
T ss_dssp SCEEEEEEC-------CCTTCEEEEE
T ss_pred CccceeeccCCCCCCCCCCCccceee
Confidence 34677765444444456778999985
No 2
>d1chua1 a.7.3.1 (A:423-533) L-aspartate oxidase {Escherichia coli [TaxId: 562]}
Probab=6.99 E-value=71 Score=23.34 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=4.7
Q ss_pred CCCCCCCCC
Q 039898 234 NPRNEYPDE 242 (322)
Q Consensus 234 nwrNDYPDE 242 (322)
+||-|||+-
T Consensus 92 HyR~DyPe~ 100 (111)
T d1chua1 92 HFTLDYPEL 100 (111)
T ss_dssp BCBTTCCSC
T ss_pred eeCCCCCCC
Confidence 455555544
No 3
>d1hula_ a.26.1.2 (A:) Interleukin-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.46 E-value=19 Score=27.46 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=33.8
Q ss_pred ccccccCCcchhhhhhccceeEEEeeeecCccchhhhhhcccc
Q 039898 16 EKLSISSSSGIEELKARKVFVQHVETATTSEANIDIVQSFVPN 58 (322)
Q Consensus 16 ~~ls~s~~~~~~e~~~e~~VFklv~TV~sqe~~~d~vqs~v~~ 58 (322)
++|-|+.|....-.---+.|||=++|+.++......+.+++|.
T Consensus 25 gtLrI~~P~~~nhqlCieeiFqGi~tLKNqT~~g~~ve~lFqn 67 (108)
T d1hula_ 25 ETLRIPVPVHKNHQLCTEEIFQGIGTLESQTVQGGTVERLFKN 67 (108)
T ss_dssp TTCEEEECSSSCGGGSHHHHHHHHHHHHTTSCCSSTHHHHHHH
T ss_pred CceeecCCCCCcchhHHHHHHHHHHHHhcCCcccchHHHHHHh
Confidence 5688888877554445556999999999999877888888775
No 4
>d1el6a_ d.182.1.1 (A:) Baseplate structural protein gp11 {Bacteriophage T4 [TaxId: 10665]}
Probab=4.04 E-value=1.4e+02 Score=24.93 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=32.6
Q ss_pred CCcCCCccccccCCcchhhhhhccceeEEEeeeecCcc
Q 039898 10 RPLLDFEKLSISSSSGIEELKARKVFVQHVETATTSEA 47 (322)
Q Consensus 10 ~~~~d~~~ls~s~~~~~~e~~~e~~VFklv~TV~sqe~ 47 (322)
.+||+...+-|+....+-+...+.-.++|=+||.++..
T Consensus 51 ~s~~pVg~Vii~t~~~~P~g~~Q~e~ltFsGtVt~~~~ 88 (208)
T d1el6a_ 51 FSIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTDDSL 88 (208)
T ss_dssp HHCCCTTBEEEESSCCCSCCBCCEEEEEEEEBCCCTTS
T ss_pred HhhCccccEEEecCCCCCccccceeEEEEEeEecCCCC
Confidence 35788888888888888888888899999999999875
No 5
>d1dwna_ d.85.1.1 (A:) PP7 coat protein {Bacteriophage PP7 [TaxId: 12023]}
Probab=3.89 E-value=1.2e+02 Score=22.64 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=26.4
Q ss_pred ccceeeeccccCCccccchhhhhcccceEEEEEeecCcccchhhhccCcchhhHHHhhcchhh
Q 039898 97 NARFEQIWRSRKGHKEELHHKELREMCHFYDVVRVDGEEKSNEVQRDMSLEDQRLLSSYLPML 159 (322)
Q Consensus 97 e~RYriV~~~R~~~~~~~~~~~~~~~fqlyDiV~~E~e~k~~~~~~~~s~dpe~ILCN~~pML 159 (322)
.-||.+||+|-...-... ...+.-.+||+. + . -.....-+.++.|.+||=
T Consensus 77 kvrytqvwshdvtivans---teasrkslydlt------k-s---lvatsqvedlvvnlvplg 126 (127)
T d1dwna_ 77 KVRYTQVWSHDVTIVANS---TEASRKSLYDLT------K-S---LVATSQVEDLVVNLVPLG 126 (127)
T ss_dssp EEEEEEEEEEEEEEETTC---CHHHHHHHHHHH------H-H---HHTCHHHHHHHHHCCCSC
T ss_pred ceeEEEeeccceEEEecc---chHHHHHHHHHH------H-H---HHhHhhhhhheeeeeecC
Confidence 569999999874332100 001223455552 1 0 012335566788888873
No 6
>d1vzva_ b.57.1.1 (A:) VZV protease {Varicella-Zoster virus [TaxId: 10335]}
Probab=3.88 E-value=1.3e+02 Score=25.28 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=9.6
Q ss_pred ccccccCCcchhhhhhccceeEEEe
Q 039898 16 EKLSISSSSGIEELKARKVFVQHVE 40 (322)
Q Consensus 16 ~~ls~s~~~~~~e~~~e~~VFklv~ 40 (322)
-.||+|+---.....+...+||||+
T Consensus 107 PslSLSS~~~~~~~~~~~~~F~HVs 131 (221)
T d1vzva_ 107 PSVSLSSKRLSPNEIPDGNFFTHVA 131 (221)
T ss_dssp CEEEEECSCC----------CCEEE
T ss_pred chhhcccCCCCCCCCCCCCccceee
Confidence 4577766222222233567999985
No 7
>d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=3.72 E-value=1.2e+02 Score=22.76 Aligned_cols=11 Identities=27% Similarity=0.595 Sum_probs=7.6
Q ss_pred CCCCCCCCCCC
Q 039898 233 DNPRNEYPDEI 243 (322)
Q Consensus 233 ~nwrNDYPDEe 243 (322)
.+||-|||+.+
T Consensus 89 ~H~R~DyP~~d 99 (138)
T d1neka1 89 AHSRFDFPDRD 99 (138)
T ss_dssp TCEESSSCSCC
T ss_pred hhhhccCCCCC
Confidence 35788888753
No 8
>d2pbka1 b.57.1.1 (A:3-230) KSHV protease {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=2.72 E-value=1.8e+02 Score=24.40 Aligned_cols=26 Identities=31% Similarity=0.256 Sum_probs=15.1
Q ss_pred CccccccCCcchh-hhhhccceeEEEe
Q 039898 15 FEKLSISSSSGIE-ELKARKVFVQHVE 40 (322)
Q Consensus 15 ~~~ls~s~~~~~~-e~~~e~~VFklv~ 40 (322)
|-.||+|+-.-.. .......+|+||+
T Consensus 108 lPslSLSS~~~~~~~~~~~~~~F~HVa 134 (228)
T d2pbka1 108 LPGLSLSSIHPRELSQTPSGPVFQHVS 134 (228)
T ss_dssp CCEEEEEEECHHHHTSCCSSCSEEEEE
T ss_pred cccceecccCccccCCCCCCCccccee
Confidence 3456776543211 2344567999985
No 9
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.71 E-value=2.7e+02 Score=22.90 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=10.5
Q ss_pred CCCceEE-EEEeecC
Q 039898 181 QDDYVYD-YYAVNDD 194 (322)
Q Consensus 181 e~dYVYD-iY~~~~~ 194 (322)
..-|+|| ||.+...
T Consensus 150 ~~gYrYDGLY~V~~~ 164 (209)
T d2zkda1 150 AEGNRYDGIYKVVKY 164 (209)
T ss_dssp SSSEEEEEEEEEEEE
T ss_pred CceEEeCcEEEEEEE
Confidence 3569999 8887654
No 10
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.40 E-value=1e+02 Score=23.43 Aligned_cols=9 Identities=44% Similarity=0.700 Sum_probs=5.2
Q ss_pred cCCCCCCCC
Q 039898 3 INERPLKRP 11 (322)
Q Consensus 3 ine~p~k~~ 11 (322)
||+||++-+
T Consensus 61 VN~R~V~~~ 69 (134)
T d1h7sa1 61 INRRPCDPA 69 (134)
T ss_dssp ETTEEECCH
T ss_pred EcCCcccCH
Confidence 566666543
Done!