Query 039899
Match_columns 341
No_of_seqs 268 out of 2214
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 1E-20 2.2E-25 208.4 20.7 249 3-258 797-1103(1153)
2 PLN00113 leucine-rich repeat r 98.9 1.8E-09 4E-14 117.5 6.6 68 5-73 161-229 (968)
3 KOG0617 Ras suppressor protein 98.8 4.9E-10 1.1E-14 97.0 0.0 67 2-70 50-116 (264)
4 PLN00113 leucine-rich repeat r 98.8 9.2E-09 2E-13 112.0 6.3 115 3-121 470-590 (968)
5 PLN03150 hypothetical protein; 98.7 2.8E-08 6E-13 103.7 6.5 103 9-115 419-528 (623)
6 PF13855 LRR_8: Leucine rich r 98.5 4.3E-08 9.4E-13 70.6 2.7 59 8-68 1-61 (61)
7 PLN03150 hypothetical protein; 98.5 1.3E-07 2.9E-12 98.6 7.2 71 3-74 437-508 (623)
8 PLN03210 Resistant to P. syrin 98.5 2.7E-07 5.9E-12 102.5 8.9 87 5-93 631-720 (1153)
9 KOG0617 Ras suppressor protein 98.4 4E-08 8.6E-13 85.3 -0.4 114 1-120 26-144 (264)
10 KOG0444 Cytoskeletal regulator 98.3 8.9E-08 1.9E-12 96.8 -0.2 64 3-68 98-162 (1255)
11 PRK15370 E3 ubiquitin-protein 98.3 4.7E-07 1E-11 95.9 5.0 73 8-87 220-293 (754)
12 KOG0618 Serine/threonine phosp 98.3 9.8E-08 2.1E-12 100.0 -2.1 81 1-84 376-459 (1081)
13 PRK15370 E3 ubiquitin-protein 98.2 2E-06 4.4E-11 91.2 6.9 101 8-120 199-300 (754)
14 PRK15387 E3 ubiquitin-protein 98.2 2.6E-06 5.5E-11 90.4 7.5 36 9-49 223-258 (788)
15 PF12799 LRR_4: Leucine Rich r 98.1 1.7E-06 3.6E-11 58.5 2.9 38 9-48 2-39 (44)
16 KOG0472 Leucine-rich repeat pr 98.1 9.9E-08 2.1E-12 92.1 -4.5 78 4-84 156-235 (565)
17 PRK15387 E3 ubiquitin-protein 98.1 5.3E-06 1.1E-10 88.0 7.9 74 33-115 342-415 (788)
18 KOG0532 Leucine-rich repeat (L 98.1 6.9E-07 1.5E-11 89.6 -0.1 63 3-68 116-178 (722)
19 PF12799 LRR_4: Leucine Rich r 98.0 3.8E-06 8.3E-11 56.7 3.0 40 33-73 1-40 (44)
20 PF14580 LRR_9: Leucine-rich r 98.0 5.7E-06 1.2E-10 72.7 4.8 105 4-115 15-126 (175)
21 KOG0444 Cytoskeletal regulator 98.0 3.4E-06 7.4E-11 85.6 2.7 107 3-114 73-185 (1255)
22 KOG4658 Apoptotic ATPase [Sign 98.0 2.3E-06 4.9E-11 92.2 1.3 80 4-84 567-649 (889)
23 PF14580 LRR_9: Leucine-rich r 98.0 3.7E-06 8E-11 73.8 2.4 61 6-69 40-101 (175)
24 KOG4194 Membrane glycoprotein 97.9 5.4E-06 1.2E-10 83.6 2.5 132 4-137 265-405 (873)
25 KOG4194 Membrane glycoprotein 97.9 8.5E-06 1.8E-10 82.2 3.1 65 2-68 167-233 (873)
26 KOG0472 Leucine-rich repeat pr 97.8 3.3E-06 7.2E-11 81.8 -0.7 74 1-80 221-295 (565)
27 COG4886 Leucine-rich repeat (L 97.5 4.5E-05 9.8E-10 74.8 2.6 75 9-86 141-218 (394)
28 PF13855 LRR_8: Leucine rich r 97.5 7.3E-05 1.6E-09 53.6 2.7 38 33-70 1-39 (61)
29 PRK15386 type III secretion pr 97.5 0.00029 6.4E-09 69.6 7.1 83 7-100 51-134 (426)
30 KOG0532 Leucine-rich repeat (L 97.4 2.5E-05 5.4E-10 78.7 -1.2 142 9-159 144-294 (722)
31 cd00116 LRR_RI Leucine-rich re 97.3 8.2E-05 1.8E-09 70.1 1.7 109 5-115 133-263 (319)
32 COG4886 Leucine-rich repeat (L 97.2 0.00017 3.6E-09 70.8 2.7 103 4-113 112-220 (394)
33 KOG0618 Serine/threonine phosp 97.2 5.3E-05 1.1E-09 80.0 -0.8 65 9-79 46-110 (1081)
34 KOG1259 Nischarin, modulator o 97.2 0.00015 3.2E-09 68.3 1.5 99 8-115 284-387 (490)
35 KOG4237 Extracellular matrix p 97.1 0.00018 3.9E-09 69.9 0.7 73 4-77 270-343 (498)
36 cd00116 LRR_RI Leucine-rich re 97.0 0.00014 3.1E-09 68.5 -0.1 110 5-115 48-178 (319)
37 PRK15386 type III secretion pr 96.9 0.0014 3E-08 64.8 5.3 41 9-52 73-114 (426)
38 KOG1259 Nischarin, modulator o 96.8 0.00036 7.8E-09 65.8 0.4 105 6-116 305-413 (490)
39 KOG0531 Protein phosphatase 1, 96.8 0.00081 1.8E-08 66.8 2.7 80 4-87 91-172 (414)
40 KOG4237 Extracellular matrix p 96.6 9.8E-05 2.1E-09 71.6 -4.8 65 3-68 86-152 (498)
41 PF00560 LRR_1: Leucine Rich R 96.4 0.00097 2.1E-08 38.0 0.2 20 35-54 2-21 (22)
42 KOG4579 Leucine-rich repeat (L 96.3 0.00041 8.8E-09 58.5 -2.3 57 10-68 29-89 (177)
43 KOG2739 Leucine-rich acidic nu 96.3 0.0026 5.6E-08 58.7 2.7 82 7-91 42-130 (260)
44 KOG2739 Leucine-rich acidic nu 96.0 0.0072 1.6E-07 55.8 3.9 66 3-70 60-130 (260)
45 KOG3207 Beta-tubulin folding c 96.0 0.0021 4.6E-08 63.3 0.3 62 6-69 119-185 (505)
46 KOG4579 Leucine-rich repeat (L 95.7 0.0012 2.5E-08 55.8 -2.2 64 5-70 50-114 (177)
47 KOG1859 Leucine-rich repeat pr 95.6 0.0021 4.4E-08 67.0 -1.2 58 7-68 186-244 (1096)
48 KOG1644 U2-associated snRNP A' 95.6 0.014 3E-07 52.3 3.9 58 9-69 43-101 (233)
49 KOG0531 Protein phosphatase 1, 95.5 0.0053 1.2E-07 61.0 1.0 63 4-70 114-176 (414)
50 KOG4658 Apoptotic ATPase [Sign 95.1 0.0068 1.5E-07 65.8 0.5 65 1-67 587-653 (889)
51 PF00560 LRR_1: Leucine Rich R 95.1 0.0059 1.3E-07 34.7 0.0 22 9-32 1-22 (22)
52 PF13504 LRR_7: Leucine rich r 94.6 0.021 4.6E-07 30.3 1.3 14 35-48 3-16 (17)
53 KOG3665 ZYG-1-like serine/thre 94.1 0.041 8.9E-07 58.3 3.5 59 6-67 171-231 (699)
54 smart00369 LRR_TYP Leucine-ric 93.6 0.06 1.3E-06 31.5 2.2 21 32-52 1-21 (26)
55 smart00370 LRR Leucine-rich re 93.6 0.06 1.3E-06 31.5 2.2 21 32-52 1-21 (26)
56 KOG3207 Beta-tubulin folding c 93.6 0.036 7.8E-07 54.8 1.8 60 7-68 245-313 (505)
57 KOG1859 Leucine-rich repeat pr 93.0 0.019 4.1E-07 60.1 -1.2 64 4-70 205-268 (1096)
58 KOG2123 Uncharacterized conser 92.7 0.0074 1.6E-07 56.6 -4.2 58 7-68 18-75 (388)
59 KOG1644 U2-associated snRNP A' 92.5 0.14 3.1E-06 45.9 3.7 72 10-85 21-96 (233)
60 PF13504 LRR_7: Leucine rich r 92.0 0.088 1.9E-06 27.9 1.2 17 8-26 1-17 (17)
61 KOG3665 ZYG-1-like serine/thre 90.7 0.091 2E-06 55.8 0.7 61 7-68 147-207 (699)
62 KOG2982 Uncharacterized conser 88.9 0.27 5.9E-06 46.8 2.3 38 9-46 72-110 (418)
63 KOG2123 Uncharacterized conser 87.4 0.036 7.9E-07 52.1 -4.5 84 5-94 38-123 (388)
64 KOG2982 Uncharacterized conser 86.6 0.2 4.3E-06 47.7 -0.1 75 10-84 47-128 (418)
65 KOG1909 Ran GTPase-activating 86.0 0.17 3.7E-06 48.8 -0.9 83 4-87 209-308 (382)
66 smart00369 LRR_TYP Leucine-ric 85.5 0.64 1.4E-05 27.0 1.8 21 7-29 1-21 (26)
67 smart00370 LRR Leucine-rich re 85.5 0.64 1.4E-05 27.0 1.8 21 7-29 1-21 (26)
68 smart00364 LRR_BAC Leucine-ric 82.4 0.87 1.9E-05 27.0 1.4 17 34-50 3-19 (26)
69 KOG2120 SCF ubiquitin ligase, 80.4 0.12 2.6E-06 49.1 -4.3 77 10-87 212-296 (419)
70 KOG1909 Ran GTPase-activating 80.0 1.2 2.6E-05 43.2 2.2 38 31-68 183-225 (382)
71 smart00365 LRR_SD22 Leucine-ri 77.0 1.9 4.2E-05 25.5 1.7 15 33-47 2-16 (26)
72 KOG0473 Leucine-rich repeat pr 75.9 0.088 1.9E-06 48.4 -6.3 62 5-68 39-100 (326)
73 KOG2120 SCF ubiquitin ligase, 75.4 1.1 2.5E-05 42.7 0.7 81 8-90 286-376 (419)
74 KOG0473 Leucine-rich repeat pr 63.5 0.21 4.6E-06 46.0 -6.7 40 29-68 38-77 (326)
75 KOG1947 Leucine rich repeat pr 62.4 2 4.4E-05 42.4 -0.7 84 6-90 212-308 (482)
76 PF13516 LRR_6: Leucine Rich r 61.2 4.5 9.7E-05 22.9 0.9 13 8-20 2-14 (24)
77 COG5238 RNA1 Ran GTPase-activa 59.3 5.7 0.00012 37.7 1.7 38 31-68 90-132 (388)
78 smart00368 LRR_RI Leucine rich 56.5 9.3 0.0002 22.7 1.8 13 34-46 3-15 (28)
79 KOG3864 Uncharacterized conser 53.0 2.2 4.7E-05 38.5 -2.0 59 10-70 103-165 (221)
80 COG5238 RNA1 Ran GTPase-activa 52.7 7.5 0.00016 36.8 1.4 66 2-68 86-169 (388)
81 PF13306 LRR_5: Leucine rich r 42.1 44 0.00096 26.4 4.3 59 3-65 7-67 (129)
82 PF13306 LRR_5: Leucine rich r 40.7 51 0.0011 26.0 4.5 60 3-66 30-91 (129)
83 smart00367 LRR_CC Leucine-rich 31.6 33 0.00072 19.7 1.4 13 56-68 2-14 (26)
84 PRK06758 hypothetical protein; 31.6 20 0.00043 28.1 0.6 37 298-340 76-114 (128)
85 KOG1947 Leucine rich repeat pr 27.8 15 0.00032 36.2 -0.9 63 6-69 241-308 (482)
86 KOG3864 Uncharacterized conser 24.4 27 0.00059 31.6 0.2 60 34-93 102-167 (221)
87 TIGR00864 PCC polycystin catio 23.5 52 0.0011 40.3 2.3 31 14-46 1-32 (2740)
88 cd07467 CRD_TK_ROR1 Cysteine-r 22.6 49 0.0011 28.0 1.4 46 290-337 14-59 (142)
89 TIGR00864 PCC polycystin catio 21.1 66 0.0014 39.5 2.5 30 39-68 1-31 (2740)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1e-20 Score=208.38 Aligned_cols=249 Identities=17% Similarity=0.250 Sum_probs=164.4
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccc--------------------cCCCCCcEEEccCCCCCCCChhccCCCCccEEE
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDI--------------------GNICSLKELYLSKNRFFSLPASINLLSKLWIIE 62 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i--------------------~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~ 62 (341)
++++|++|+.|+|++|... +.+|..+ ...++|+.|+|++|.++.+|.++..+++|+.|+
T Consensus 797 si~~L~~L~~L~Ls~C~~L-~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINL-ETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLD 875 (1153)
T ss_pred hhhCCCCCCEEECCCCCCc-CeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEE
Confidence 4566777777777777554 4566433 112457777888888899999999999999999
Q ss_pred cCCccccccCCCCCc---cccccccccccccCcch--hhhH----------------------HHHhhchhccC--CCCc
Q 039899 63 LEECQRLQSLPQLPS---NIEQVQVNGCASLGTLS--HALK----------------------LCKSIDVEVSK--PIPH 113 (341)
Q Consensus 63 Ls~c~~l~~lP~lp~---sL~~L~~~~c~sL~~l~--~~p~----------------------~l~~~l~~l~l--~~n~ 113 (341)
|++|+.+..+|..+. +|+.|++.+|.+|+.++ ..|. +|.++-+...+ +...
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~ 955 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIF 955 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccccc
Confidence 999999998887544 55667889999998653 1111 11111101111 1112
Q ss_pred cccccCCCCccccchhccCCCeEE-EEcCCCCCCCCccceEEEEEEeccCCCcCccccCCCCceeeEEEEeeCCCceEEE
Q 039899 114 LSIVVPGSEISKCFRYQKEDSAMA-VTMPLFLRENEVVGYAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSFIH 192 (341)
Q Consensus 114 ~~~~lPg~~iP~wf~~~~~g~si~-~~Lp~~~~~~~~~gf~~c~v~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 192 (341)
...++||.++|.||.|+..|++++ +.+|+.|....+.||++|+|+++..... ........+.|++....+..+..
T Consensus 956 ~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~----~~~~~~~~~~c~~~~~~~~~~~~ 1031 (1153)
T PLN03210 956 KQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFI----ISVSFDIQVCCRFIDRLGNHFDS 1031 (1153)
T ss_pred eEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCcccc----CCCceeEEEEEEEECCCCCcccc
Confidence 235789999999999999999998 9999999877899999999998765311 11233467788887765554321
Q ss_pred ee--e-cccCCCCCceEEEEeCCCcCCCCc----CCCCCCeEEEEEEeCCC-CCeEEeeeeEEEEEecCCcccc
Q 039899 193 FK--E-KFGQAGSDHLWLFYLSPKEGYSRK----WNFKSPDFVLSFQSDSG-PGLEVKCCGFHPVYRHEVVKCD 258 (341)
Q Consensus 193 ~~--~-~~~~~~sdHl~l~~~~~~~~l~~~----~~~~~~~v~~~F~~~~~-~~~~Vk~CGV~liy~~d~~~~~ 258 (341)
.. + .+.....+|+++|..... +.+. ....+.|+.++|+.... ..++||+|||+++|+.+..+..
T Consensus 1032 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~~~~ 1103 (1153)
T PLN03210 1032 PYQPHVFSVTKKGSHLVIFDCCFP--LNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLNNT 1103 (1153)
T ss_pred CCCceeEeeeccccceEEeccccc--ccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCcccC
Confidence 11 0 112245667776643322 1111 23356788888875432 3479999999999977666543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.89 E-value=1.8e-09 Score=117.49 Aligned_cols=68 Identities=28% Similarity=0.374 Sum_probs=31.0
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCC
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLP 73 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP 73 (341)
+++++|++|+|++|.+. +.+|..++++++|++|+|++|.+. .+|..++++++|+.|+|++|++.+.+|
T Consensus 161 ~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred hcCCCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 34444444444444444 344444444444444444444444 344444444444444444444444433
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.84 E-value=4.9e-10 Score=97.02 Aligned_cols=67 Identities=24% Similarity=0.397 Sum_probs=45.5
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ 70 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~ 70 (341)
|.+..|.+|+.|++++|++.+ +|.+|++|+.|+.|+++-|.+..+|..+|.++.|+.|+|.+|.+..
T Consensus 50 pnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred CcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccc
Confidence 345566667777777777744 7777777777777777777777777777777777777777666543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.75 E-value=9.2e-09 Score=112.02 Aligned_cols=115 Identities=24% Similarity=0.342 Sum_probs=84.4
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQL---PSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s 78 (341)
....+++|+.|+|++|++. |.+|..++.+++|+.|+|++|.+. .+|..++++++|+.|+|++|.+.+.+|.. .++
T Consensus 470 ~~~~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 548 (968)
T PLN00113 470 DSFGSKRLENLDLSRNQFS-GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548 (968)
T ss_pred cccccccceEEECcCCccC-CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCccc
Confidence 3334567778888888887 778888888888888888888887 78888888888888888888888877753 246
Q ss_pred ccccccccccccCcchhhhHHHHh--hchhccCCCCccccccCCC
Q 039899 79 IEQVQVNGCASLGTLSHALKLCKS--IDVEVSKPIPHLSIVVPGS 121 (341)
Q Consensus 79 L~~L~~~~c~sL~~l~~~p~~l~~--~l~~l~l~~n~~~~~lPg~ 121 (341)
|+.|+++++.-... +|..+.. .++.+++++|.+.+.+|..
T Consensus 549 L~~L~Ls~N~l~~~---~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 549 LSQLDLSQNQLSGE---IPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred CCEEECCCCccccc---CChhHhcCcccCEEeccCCcceeeCCCc
Confidence 67777766643333 3444433 3778888888888888754
No 5
>PLN03150 hypothetical protein; Provisional
Probab=98.67 E-value=2.8e-08 Score=103.65 Aligned_cols=103 Identities=19% Similarity=0.256 Sum_probs=75.8
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCCC---Ccccccccc
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQV 84 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~~ 84 (341)
.++.|+|++|.+. |.+|..++.|++|+.|+|++|.+. .+|..++.+++|+.|+|++|++.+.+|+. .++|+.|++
T Consensus 419 ~v~~L~L~~n~L~-g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLR-GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCcc-ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3778899999998 889999999999999999999988 88888999999999999999998888763 345666666
Q ss_pred ccccccCcchhhhHHHHhh---chhccCCCCccc
Q 039899 85 NGCASLGTLSHALKLCKSI---DVEVSKPIPHLS 115 (341)
Q Consensus 85 ~~c~sL~~l~~~p~~l~~~---l~~l~l~~n~~~ 115 (341)
+++.--. .+|..+... +..+++.+|...
T Consensus 498 s~N~l~g---~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSG---RVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCcccc---cCChHHhhccccCceEEecCCccc
Confidence 6553211 345444332 334556666543
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=4.3e-08 Score=70.64 Aligned_cols=59 Identities=32% Similarity=0.486 Sum_probs=52.8
Q ss_pred CCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccc
Q 039899 8 CSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQR 68 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~ 68 (341)
++|++|+|++|++.+ +|. .+..+++|+.|++++|.++.+|+ .+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 579999999999974 774 68999999999999999998875 789999999999999974
No 7
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=1.3e-07 Score=98.59 Aligned_cols=71 Identities=32% Similarity=0.499 Sum_probs=59.6
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCC
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQ 74 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~ 74 (341)
++..|++|+.|+|++|++. |.+|..++.+++|+.|+|++|.+. .+|..+++|++|+.|+|++|++.|.+|.
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred HHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence 4667788888888888887 888888888888888888888888 7888888888888888888888887775
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.51 E-value=2.7e-07 Score=102.54 Aligned_cols=87 Identities=28% Similarity=0.499 Sum_probs=44.7
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCC-CCCCChhccCCCCccEEEcCCccccccCCC--CCccccc
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNR-FFSLPASINLLSKLWIIELEECQRLQSLPQ--LPSNIEQ 81 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~-~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~--lp~sL~~ 81 (341)
..+++|+.|+|++|+.. +.+| .++.+++|+.|+|++|. +..+|.+|++|.+|+.|++++|..++.+|. -+.+|+.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l-~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNL-KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCc-CcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 34555555555555433 3344 25555555555555542 335555555555555555555555555553 1344555
Q ss_pred cccccccccCcc
Q 039899 82 VQVNGCASLGTL 93 (341)
Q Consensus 82 L~~~~c~sL~~l 93 (341)
|++.+|..|+.+
T Consensus 709 L~Lsgc~~L~~~ 720 (1153)
T PLN03210 709 LNLSGCSRLKSF 720 (1153)
T ss_pred EeCCCCCCcccc
Confidence 555555444433
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.42 E-value=4e-08 Score=85.30 Aligned_cols=114 Identities=25% Similarity=0.310 Sum_probs=81.1
Q ss_pred CCCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC---c
Q 039899 1 LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP---S 77 (341)
Q Consensus 1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---~ 77 (341)
+|-+..+..++.|.||+|.++- +|+.|..|.+|+.|++++|.++++|.+|+.|++|+.|++.-|++. .+|.=. +
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 3556677888999999999974 999999999999999999999999999999999999999988764 344322 2
Q ss_pred cccccccccccccCcchhhhHHHH--hhchhccCCCCccccccCC
Q 039899 78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVPG 120 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lPg 120 (341)
.|+.|++..- .|.. ..+|.+++ ..+..+.++.|.|.. +|+
T Consensus 103 ~levldltyn-nl~e-~~lpgnff~m~tlralyl~dndfe~-lp~ 144 (264)
T KOG0617|consen 103 ALEVLDLTYN-NLNE-NSLPGNFFYMTTLRALYLGDNDFEI-LPP 144 (264)
T ss_pred hhhhhhcccc-cccc-ccCCcchhHHHHHHHHHhcCCCccc-CCh
Confidence 3444444211 1110 02344442 336667777777764 443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.33 E-value=8.9e-08 Score=96.80 Aligned_cols=64 Identities=28% Similarity=0.374 Sum_probs=39.6
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQR 68 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~ 68 (341)
.+.+|.-|+.||||.|++.| +|..+..-.++-.|+||.|+|.+||.+ +-+|+-|-+|+|++|++
T Consensus 98 diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 45566677777777777754 666666666666666666666666643 34555555556655554
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.33 E-value=4.7e-07 Score=95.90 Aligned_cols=73 Identities=26% Similarity=0.381 Sum_probs=47.7
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC-CCcccccccccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ-LPSNIEQVQVNG 86 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~-lp~sL~~L~~~~ 86 (341)
.+|+.|+|++|++.. +|..+. .+|+.|+|++|.+..+|..+. ++|+.|++++|++. .+|. +|.+|+.|++++
T Consensus 220 ~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~ 292 (754)
T PRK15370 220 GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLPEELRYLSVYD 292 (754)
T ss_pred cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccCCCCcEEECCC
Confidence 467888888887753 776543 357777777777777776554 46777777766654 4554 556666666655
Q ss_pred c
Q 039899 87 C 87 (341)
Q Consensus 87 c 87 (341)
+
T Consensus 293 N 293 (754)
T PRK15370 293 N 293 (754)
T ss_pred C
Confidence 4
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.25 E-value=9.8e-08 Score=99.97 Aligned_cols=81 Identities=27% Similarity=0.473 Sum_probs=61.8
Q ss_pred CCCCCCCCCCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cc
Q 039899 1 LPSLLGLCSLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PS 77 (341)
Q Consensus 1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~ 77 (341)
+|.+.++++|+.|+|++|++ +++|.+ +.+|..|++|+||||.++.||.++..+..|+.|...+|.++ ..|++ .+
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL--~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~ 452 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRL--NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFPELAQLP 452 (1081)
T ss_pred hhhhccccceeeeeeccccc--ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-echhhhhcC
Confidence 46788899999999999999 459975 78899999999999999999988877777777766666653 44442 23
Q ss_pred ccccccc
Q 039899 78 NIEQVQV 84 (341)
Q Consensus 78 sL~~L~~ 84 (341)
.|+.+|+
T Consensus 453 qL~~lDl 459 (1081)
T KOG0618|consen 453 QLKVLDL 459 (1081)
T ss_pred cceEEec
Confidence 4444444
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.22 E-value=2e-06 Score=91.19 Aligned_cols=101 Identities=21% Similarity=0.310 Sum_probs=78.9
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC-CCcccccccccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ-LPSNIEQVQVNG 86 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~-lp~sL~~L~~~~ 86 (341)
++|+.|+|++|++.. +|..+. ++|+.|+|++|+|+.||.++. .+|+.|+|++|.+. .||. +|.+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKS--LPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCc--CChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHhCCCCEEECcC
Confidence 469999999999974 898765 589999999999999998765 47999999999875 6664 677899999964
Q ss_pred ccccCcchhhhHHHHhhchhccCCCCccccccCC
Q 039899 87 CASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPG 120 (341)
Q Consensus 87 c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg 120 (341)
..|..+ |..+...++.+++++|.+.. +|+
T Consensus 272 -N~L~~L---P~~l~~sL~~L~Ls~N~Lt~-LP~ 300 (754)
T PRK15370 272 -NKISCL---PENLPEELRYLSVYDNSIRT-LPA 300 (754)
T ss_pred -CccCcc---ccccCCCCcEEECCCCcccc-Ccc
Confidence 356654 33444457788888888874 454
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.22 E-value=2.6e-06 Score=90.38 Aligned_cols=36 Identities=39% Similarity=0.484 Sum_probs=17.9
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP 49 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP 49 (341)
+|+.|++++|+++. +|.. +++|++|+|++|+|+.+|
T Consensus 223 ~L~~L~L~~N~Lt~--LP~l---p~~Lk~LdLs~N~LtsLP 258 (788)
T PRK15387 223 HITTLVIPDNNLTS--LPAL---PPELRTLEVSGNQLTSLP 258 (788)
T ss_pred CCCEEEccCCcCCC--CCCC---CCCCcEEEecCCccCccc
Confidence 45555555555532 4432 344555555555555444
No 15
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=1.7e-06 Score=58.47 Aligned_cols=38 Identities=29% Similarity=0.574 Sum_probs=18.4
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL 48 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L 48 (341)
+|++|+|++|++.+ +|..++.|++|+.|+|++|.|+.+
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555543 554455555555555555555543
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.14 E-value=9.9e-08 Score=92.14 Aligned_cols=78 Identities=26% Similarity=0.417 Sum_probs=54.3
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCc--cccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPS--NIEQ 81 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~--sL~~ 81 (341)
++++.+|..|++.+|.+.+ +|++.-+|+.|++||...|-++++|+.++.+.+|..|+|..|++ +++|++|+ .+++
T Consensus 156 ~~~~~~l~~l~~~~n~l~~--l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki-~~lPef~gcs~L~E 232 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKA--LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI-RFLPEFPGCSLLKE 232 (565)
T ss_pred HHHHHHHHHhhccccchhh--CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc-ccCCCCCccHHHHH
Confidence 4455556666666666653 66655557777777777777888888888888888888888887 56777663 4444
Q ss_pred ccc
Q 039899 82 VQV 84 (341)
Q Consensus 82 L~~ 84 (341)
|++
T Consensus 233 lh~ 235 (565)
T KOG0472|consen 233 LHV 235 (565)
T ss_pred HHh
Confidence 444
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.14 E-value=5.3e-06 Score=88.04 Aligned_cols=74 Identities=31% Similarity=0.338 Sum_probs=39.8
Q ss_pred CCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccccccccccccccCcchhhhHHHHhhchhccCCCC
Q 039899 33 CSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIP 112 (341)
Q Consensus 33 ~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n 112 (341)
.+|+.|+|++|+|+.+|... ++|+.|++++|++. .+|.+|.+|+.|+++++ .|..++..+ ..++.+++++|
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~-~LP~l~~~L~~LdLs~N-~Lt~LP~l~----s~L~~LdLS~N 412 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLT-SLPALPSGLKELIVSGN-RLTSLPVLP----SELKELMVSGN 412 (788)
T ss_pred cccceEecCCCccCCCCCCC---cccceehhhccccc-cCcccccccceEEecCC-cccCCCCcc----cCCCEEEccCC
Confidence 36777777777777777432 34555566665543 45555555666655443 233332221 22444555555
Q ss_pred ccc
Q 039899 113 HLS 115 (341)
Q Consensus 113 ~~~ 115 (341)
.++
T Consensus 413 ~Ls 415 (788)
T PRK15387 413 RLT 415 (788)
T ss_pred cCC
Confidence 554
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.08 E-value=6.9e-07 Score=89.61 Aligned_cols=63 Identities=32% Similarity=0.481 Sum_probs=41.0
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR 68 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~ 68 (341)
++.+|..|++|||+.|+++- +|..++.|+ |+.|.+++|+++.+|..|+.+..|..|+.+.|.+
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred hhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh
Confidence 45566667777777777653 666666555 6666666666666666666666666666666655
No 19
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=3.8e-06 Score=56.70 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=34.1
Q ss_pred CCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCC
Q 039899 33 CSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLP 73 (341)
Q Consensus 33 ~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP 73 (341)
++|++|+|++|+|+.+|+.|++|++|+.|++++|++. .+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 4799999999999999999999999999999999874 444
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.03 E-value=5.7e-06 Score=72.68 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=27.8
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCcccc-CCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC-C---Ccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIG-NICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ-L---PSN 78 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~-~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~-l---p~s 78 (341)
+.+...+++|+|++|.|.. | +.++ .+.+|+.|+|++|.++.++ .+..|++|+.|++++|++. ++++ + .++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred ccccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 4455567777887777753 4 3565 4677778888888777775 5667777778888777764 3432 1 246
Q ss_pred ccccccccc--cccCcchhhhHHHHhhchhccCCCCccc
Q 039899 79 IEQVQVNGC--ASLGTLSHALKLCKSIDVEVSKPIPHLS 115 (341)
Q Consensus 79 L~~L~~~~c--~sL~~l~~~p~~l~~~l~~l~l~~n~~~ 115 (341)
|+.|++++. ..+..+..+- ....++.+++.+|.++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~--~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLS--SLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGG--G-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHH--cCCCcceeeccCCccc
Confidence 666666432 1222221110 1123666777777765
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.98 E-value=3.4e-06 Score=85.64 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=76.7
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC-CC---cc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ-LP---SN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~-lp---~s 78 (341)
.++.|+.|+.+.+..|++....||.+|..|.-|..||||.|.+.+.|..+..-.++-.|+|++|++ .+||. +. ..
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtD 151 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTD 151 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHh
Confidence 356778888888888888766799999999999999999999999999999999999999999987 56664 22 23
Q ss_pred ccccccccccccCcchhhhHHHH--hhchhccCCCCcc
Q 039899 79 IEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHL 114 (341)
Q Consensus 79 L~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~ 114 (341)
|-.|++++. .|+.+ |..+. ..++.+.|++|.+
T Consensus 152 LLfLDLS~N-rLe~L---PPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 152 LLFLDLSNN-RLEML---PPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred Hhhhccccc-hhhhc---CHHHHHHhhhhhhhcCCChh
Confidence 345555442 34444 33332 2355555555544
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.97 E-value=2.3e-06 Score=92.23 Aligned_cols=80 Identities=30% Similarity=0.436 Sum_probs=69.6
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC---cccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP---SNIE 80 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---~sL~ 80 (341)
|..|+.|++|||++|.-. +.+|++|+.|-+|++|+|++..+..+|.++++|.+|.+|++..+..+.++|... .+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 667999999999998776 789999999999999999999999999999999999999999999887776543 3444
Q ss_pred cccc
Q 039899 81 QVQV 84 (341)
Q Consensus 81 ~L~~ 84 (341)
+|.+
T Consensus 646 ~L~l 649 (889)
T KOG4658|consen 646 VLRL 649 (889)
T ss_pred EEEe
Confidence 4443
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.97 E-value=3.7e-06 Score=73.85 Aligned_cols=61 Identities=26% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhc-cCCCCccEEEcCCcccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI-NLLSKLWIIELEECQRL 69 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si-~~Ls~L~~L~Ls~c~~l 69 (341)
.+.+|+.|+|++|.+.. ++ .+..++.|+.|+|++|.++++++.+ ..+++|+.|+|++|++.
T Consensus 40 ~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp T-TT--EEE-TTS--S----T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---
T ss_pred hhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCC
Confidence 46789999999999974 65 5888999999999999999998766 46899999999999884
No 24
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.90 E-value=5.4e-06 Score=83.64 Aligned_cols=132 Identities=16% Similarity=0.123 Sum_probs=80.3
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC-CChhccCCCCccEEEcCCccccccCCCC---Cccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS-LPASINLLSKLWIIELEECQRLQSLPQL---PSNI 79 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~-LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL 79 (341)
|-.|..+++|+|+.|++.+ ---..+.+|++|+.|+||.|.|.. -+.++....+|+.|+|++|++.+--|+- ...|
T Consensus 265 Fy~l~kme~l~L~~N~l~~-vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQA-VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred eeeecccceeecccchhhh-hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 3456667777787777763 223346778888888888888883 3567777888888888888775322221 2344
Q ss_pred cccccccccccCcchhhhHHHHhhchhccCCCCccccccCCC-----CccccchhccCCCeEE
Q 039899 80 EQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGS-----EISKCFRYQKEDSAMA 137 (341)
Q Consensus 80 ~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg~-----~iP~wf~~~~~g~si~ 137 (341)
+.|+++. .++..+..---.+.+.+++++|++|.++.++-.. .+|..-.....||.+.
T Consensus 344 e~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 344 EELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred hhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 4444432 1333332211122455888899999888776432 4565555556677665
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.86 E-value=8.5e-06 Score=82.24 Aligned_cols=65 Identities=28% Similarity=0.422 Sum_probs=47.5
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQR 68 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~ 68 (341)
|++..=.++++|+|++|.|+. +- ..|.+|.+|..|.|+.|.++.||. ++++|++|+.|+|..|++
T Consensus 167 ~sfp~~~ni~~L~La~N~It~--l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASNRITT--LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred CCCCCCCCceEEeeccccccc--cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 345555567777777777753 42 346777888888888888888885 677788888888888876
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.81 E-value=3.3e-06 Score=81.79 Aligned_cols=74 Identities=26% Similarity=0.399 Sum_probs=50.7
Q ss_pred CCCCCCCCCCcEEeccCCCCCCCCCCcccc-CCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccc
Q 039899 1 LPSLLGLCSLTKLDISDCNLGEGAIPSDIG-NICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNI 79 (341)
Q Consensus 1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~i~-~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL 79 (341)
+|+|++...|++|.++.|++. .+|.+++ +|++|..|||..|+++++|..+.-|.+|.+|++++|.+. .+|.++
T Consensus 221 lPef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is----~Lp~sL 294 (565)
T KOG0472|consen 221 LPEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS----SLPYSL 294 (565)
T ss_pred CCCCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc----cCCccc
Confidence 466666666666666666663 3666665 677777777777777777777777777777777777665 455555
Q ss_pred c
Q 039899 80 E 80 (341)
Q Consensus 80 ~ 80 (341)
.
T Consensus 295 g 295 (565)
T KOG0472|consen 295 G 295 (565)
T ss_pred c
Confidence 3
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.53 E-value=4.5e-05 Score=74.78 Aligned_cols=75 Identities=33% Similarity=0.488 Sum_probs=42.9
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC---CCccccccccc
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ---LPSNIEQVQVN 85 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~---lp~sL~~L~~~ 85 (341)
+|+.|++++|.+.+ +|..++.+++|+.|+++.|.+..+|...+.++.|+.|++++|++ ..+|. .+..|+.|.+.
T Consensus 141 nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhc
Confidence 56666666666643 55556666666666666666666665555566666666666655 23443 34445555554
Q ss_pred c
Q 039899 86 G 86 (341)
Q Consensus 86 ~ 86 (341)
+
T Consensus 218 ~ 218 (394)
T COG4886 218 N 218 (394)
T ss_pred C
Confidence 3
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.50 E-value=7.3e-05 Score=53.61 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=34.4
Q ss_pred CCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccc
Q 039899 33 CSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQ 70 (341)
Q Consensus 33 ~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~ 70 (341)
++|+.|+|++|.++.+|. .+..+++|+.|++++|++..
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~ 39 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS 39 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc
Confidence 579999999999999985 78999999999999999864
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.45 E-value=0.00029 Score=69.56 Aligned_cols=83 Identities=19% Similarity=0.379 Sum_probs=56.7
Q ss_pred CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccC-CCCCCCChhccCCCCccEEEcCCccccccCCCCCccccccccc
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSK-NRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVN 85 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~-N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~ 85 (341)
+..++.|++++|.+.. +|. -.++|+.|.+++ ++++.+|..+. ++|+.|.+++|..+ +.+|++|+.|++.
T Consensus 51 ~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L---~sLP~sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEI---SGLPESVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccc---cccccccceEEeC
Confidence 5678899999998864 882 234699999987 46778887663 68899999988654 3566777777764
Q ss_pred cccccCcchhhhHHH
Q 039899 86 GCASLGTLSHALKLC 100 (341)
Q Consensus 86 ~c~sL~~l~~~p~~l 100 (341)
+..+..+..+|.++
T Consensus 121 -~n~~~~L~~LPssL 134 (426)
T PRK15386 121 -GSATDSIKNVPNGL 134 (426)
T ss_pred -CCCCcccccCcchH
Confidence 33333334444444
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.39 E-value=2.5e-05 Score=78.67 Aligned_cols=142 Identities=21% Similarity=0.241 Sum_probs=97.2
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC-ccccccccccc
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP-SNIEQVQVNGC 87 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp-~sL~~L~~~~c 87 (341)
-|+.|-+++|++. .+|..||.+..|..||.+.|.+.++|+-++.|.+|+.|.+..|.++.-.+++- -.|..||+ .|
T Consensus 144 pLkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDf-Sc 220 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDF-SC 220 (722)
T ss_pred cceeEEEecCccc--cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeec-cc
Confidence 3899999999994 59999999999999999999999999999999999999999999873222221 12334454 34
Q ss_pred cccCcchhhhHHHHhh--chhccCCCCccc-----cccCCC-CccccchhccCCCeEEEEcCCCCCCCCccceEEEEEEe
Q 039899 88 ASLGTLSHALKLCKSI--DVEVSKPIPHLS-----IVVPGS-EISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFN 159 (341)
Q Consensus 88 ~sL~~l~~~p~~l~~~--l~~l~l~~n~~~-----~~lPg~-~iP~wf~~~~~g~si~~~Lp~~~~~~~~~gf~~c~v~~ 159 (341)
..+..+ |-.+.++ |+.+.|.+|.+. +|+-|. +|=+|+.-|.........++. ...-.+|..|.+-.
T Consensus 221 Nkis~i---Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q~~~a~~~~t---~~RP~~~~~c~~ed 294 (722)
T KOG0532|consen 221 NKISYL---PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQSGGALDLYT---TLRPRHFSSCHVED 294 (722)
T ss_pred Cceeec---chhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhccccCCccccc---ccCCcccCCcchhh
Confidence 444444 4444333 788888888775 455554 666777766653222222221 12344566677743
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.34 E-value=8.2e-05 Score=70.14 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=72.3
Q ss_pred CCC-CCCcEEeccCCCCCCCC----CCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccccc---
Q 039899 5 LGL-CSLTKLDISDCNLGEGA----IPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRLQS--- 71 (341)
Q Consensus 5 ~~L-~~L~~LdLs~~~l~eg~----iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l~~--- 71 (341)
..+ ++|+.|+|++|.++ +. ++..+..+.+|+.|+|++|.+. .++..+..+++|+.|++++|.+...
T Consensus 133 ~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 133 KDLPPALEKLVLGRNRLE-GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HhCCCCceEEEcCCCcCC-chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 345 78999999999987 32 3345667788999999999888 3555666778999999999976421
Q ss_pred -CCC---CCccccccccccccccCc--chhhhHHHH---hhchhccCCCCccc
Q 039899 72 -LPQ---LPSNIEQVQVNGCASLGT--LSHALKLCK---SIDVEVSKPIPHLS 115 (341)
Q Consensus 72 -lP~---lp~sL~~L~~~~c~sL~~--l~~~p~~l~---~~l~~l~l~~n~~~ 115 (341)
++. -.++|+.|++++|. +.. +..+...+. ..++.+++++|.+.
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 111 12568888887763 332 112222232 34677788888765
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.25 E-value=0.00017 Score=70.77 Aligned_cols=103 Identities=31% Similarity=0.372 Sum_probs=76.8
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCC-CCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC---CCccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNIC-SLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ---LPSNI 79 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~-~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~---lp~sL 79 (341)
+..++.++.|++.++++++ +|..++.+. +|+.|++++|.+..+|..++.+++|+.|++++|++. .+|. .++.+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCccccc--CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence 3445678999999999976 999888885 999999999999999988999999999999999985 4444 45667
Q ss_pred cccccccccccCcchhhhHH--HHhhchhccCCCCc
Q 039899 80 EQVQVNGCASLGTLSHALKL--CKSIDVEVSKPIPH 113 (341)
Q Consensus 80 ~~L~~~~c~sL~~l~~~p~~--l~~~l~~l~l~~n~ 113 (341)
+.|++++. .++ .+|.. ....++.+.+++|.
T Consensus 189 ~~L~ls~N-~i~---~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 189 NNLDLSGN-KIS---DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hheeccCC-ccc---cCchhhhhhhhhhhhhhcCCc
Confidence 77766553 122 23333 33346666666663
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.24 E-value=5.3e-05 Score=80.03 Aligned_cols=65 Identities=29% Similarity=0.476 Sum_probs=57.6
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccc
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNI 79 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL 79 (341)
.|+.|||++|.++ .+|..|..+..|+.|+++.|.|.++|.+++++.+|++|.|.+|++. .+|.++
T Consensus 46 ~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~----~lP~~~ 110 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ----SLPASI 110 (1081)
T ss_pred eeEEeeccccccc--cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh----cCchhH
Confidence 4899999999995 5999999999999999999999999999999999999999988774 455554
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.18 E-value=0.00015 Score=68.34 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=68.1
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Ccccccccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQV 84 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~~ 84 (341)
..|+.||||+|.+++ |-.+..-++.++.|+||.|.+..+.. +..|++|+.|+|++|.+. ++-.+ ..+++.|.+
T Consensus 284 q~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 458889999999975 88888889999999999999998764 888999999999999874 33332 345555554
Q ss_pred ccccccCcchhhhHHHHhh--chhccCCCCccc
Q 039899 85 NGCASLGTLSHALKLCKSI--DVEVSKPIPHLS 115 (341)
Q Consensus 85 ~~c~sL~~l~~~p~~l~~~--l~~l~l~~n~~~ 115 (341)
.+. .++.++. +.++ +..+++++|++.
T Consensus 360 a~N-~iE~LSG----L~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 360 AQN-KIETLSG----LRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhh-hHhhhhh----hHhhhhheeccccccchh
Confidence 321 1222221 1221 455667777664
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.05 E-value=0.00018 Score=69.87 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=63.3
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCCCc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQLPS 77 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~lp~ 77 (341)
|.+|++|++|+|++|.++ +.-+..|..+++|++|.|.+|++..+-. .+.+|+.|+.|+|.+|+++..-|....
T Consensus 270 f~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred HhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 678999999999999998 5557789999999999999999997765 688999999999999999876665443
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.03 E-value=0.00014 Score=68.46 Aligned_cols=110 Identities=20% Similarity=0.155 Sum_probs=67.0
Q ss_pred CCCCCCcEEeccCCCCCC-----CCCCccccCCCCCcEEEccCCCCC-CCChhccCCCC---ccEEEcCCccccc-----
Q 039899 5 LGLCSLTKLDISDCNLGE-----GAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSK---LWIIELEECQRLQ----- 70 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~e-----g~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~---L~~L~Ls~c~~l~----- 70 (341)
...+.|+.|+++++.+.. +.++..++.+++|+.|+|++|.+. ..+..+..+.+ |+.|++++|++..
T Consensus 48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence 345667888888877641 112345666778888888888877 45555655555 8888888887652
Q ss_pred ---cCCCCCccccccccccccccCc--chhhhHHHHh--hchhccCCCCccc
Q 039899 71 ---SLPQLPSNIEQVQVNGCASLGT--LSHALKLCKS--IDVEVSKPIPHLS 115 (341)
Q Consensus 71 ---~lP~lp~sL~~L~~~~c~sL~~--l~~~p~~l~~--~l~~l~l~~n~~~ 115 (341)
.++.++++|+.|++.+|. +.. ...++..+.. .++.+++++|.+.
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 233444677778777764 221 1122333322 3666777777665
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.88 E-value=0.0014 Score=64.84 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=29.3
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCC-CCCCCChhc
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKN-RFFSLPASI 52 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N-~~~~LP~si 52 (341)
+|+.|.+++|.-. ..+|..+. ++|+.|.+++| .+..+|.++
T Consensus 73 sLtsL~Lsnc~nL-tsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 73 ELTEITIENCNNL-TTLPGSIP--EGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred CCcEEEccCCCCc-ccCCchhh--hhhhheEccCccccccccccc
Confidence 5889999887665 55776553 57888888887 666777543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.80 E-value=0.00036 Score=65.77 Aligned_cols=105 Identities=13% Similarity=0.084 Sum_probs=68.7
Q ss_pred CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccccccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIEQVQ 83 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~~L~ 83 (341)
-++.++.|++|+|.+.+ +- ++..|++|+.||||+|.++++-.+=..|.+.+.|.|++|.+ .++..+ .-+|..|+
T Consensus 305 L~Pkir~L~lS~N~i~~--v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~i-E~LSGL~KLYSLvnLD 380 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRT--VQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKI-ETLSGLRKLYSLVNLD 380 (490)
T ss_pred hccceeEEeccccceee--eh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhH-hhhhhhHhhhhheecc
Confidence 45789999999999974 44 48999999999999999997766556778889999999876 333333 23555566
Q ss_pred cccccccCcchhhhHHHHh--hchhccCCCCcccc
Q 039899 84 VNGCASLGTLSHALKLCKS--IDVEVSKPIPHLSI 116 (341)
Q Consensus 84 ~~~c~sL~~l~~~p~~l~~--~l~~l~l~~n~~~~ 116 (341)
+.+. ..+.++.+ +.+.+ -++.+.+.+|.+++
T Consensus 381 l~~N-~Ie~ldeV-~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 381 LSSN-QIEELDEV-NHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cccc-chhhHHHh-cccccccHHHHHhhcCCCccc
Confidence 5432 11111110 01111 14556677777764
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.76 E-value=0.00081 Score=66.81 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=63.0
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIEQ 81 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~~ 81 (341)
+..+.+|+.|++.+|++.. +...+.++++|+.|+|++|.|+.+. .+..|+.|+.|++++|.+. .++.+ ...++.
T Consensus 91 l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLIS-DISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhh--cccchhhhhcchheecccccccccc-chhhccchhhheeccCcch-hccCCccchhhhc
Confidence 6678889999999999964 6655888999999999999999876 5777888999999999874 45554 456666
Q ss_pred cccccc
Q 039899 82 VQVNGC 87 (341)
Q Consensus 82 L~~~~c 87 (341)
++++++
T Consensus 167 l~l~~n 172 (414)
T KOG0531|consen 167 LDLSYN 172 (414)
T ss_pred ccCCcc
Confidence 666443
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.61 E-value=9.8e-05 Score=71.63 Aligned_cols=65 Identities=28% Similarity=0.326 Sum_probs=34.5
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccC-CCCCCCCh-hccCCCCccEEEcCCccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSK-NRFFSLPA-SINLLSKLWIIELEECQR 68 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~-N~~~~LP~-si~~Ls~L~~L~Ls~c~~ 68 (341)
+|..+++|+.||||+|+|+ ..-|..|..|.+|..|-+.+ |+|+.||. .+++|++|+.|.++-|++
T Consensus 86 aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i 152 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI 152 (498)
T ss_pred hccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh
Confidence 3555555555666665555 33355555555555544444 55555554 455555555555554443
No 41
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.38 E-value=0.00097 Score=37.97 Aligned_cols=20 Identities=40% Similarity=0.459 Sum_probs=11.0
Q ss_pred CcEEEccCCCCCCCChhccC
Q 039899 35 LKELYLSKNRFFSLPASINL 54 (341)
Q Consensus 35 L~~L~Ls~N~~~~LP~si~~ 54 (341)
|++|+|++|+|+.||++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55555555555555555443
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.32 E-value=0.00041 Score=58.54 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=27.5
Q ss_pred CcEEeccCCCCCCCCCCccccC---CCCCcEEEccCCCCCCCChhccCC-CCccEEEcCCccc
Q 039899 10 LTKLDISDCNLGEGAIPSDIGN---ICSLKELYLSKNRFFSLPASINLL-SKLWIIELEECQR 68 (341)
Q Consensus 10 L~~LdLs~~~l~eg~iP~~i~~---L~~L~~L~Ls~N~~~~LP~si~~L-s~L~~L~Ls~c~~ 68 (341)
+..|+|+.|.+ +.+++.... ...|+..+|++|.|...|..+... +.++.|+|++|++
T Consensus 29 ~h~ldLssc~l--m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei 89 (177)
T KOG4579|consen 29 LHFLDLSSCQL--MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI 89 (177)
T ss_pred hhhcccccchh--hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh
Confidence 33455555555 334443322 223444455555555555544433 2455555555554
No 43
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.0026 Score=58.68 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=56.7
Q ss_pred CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCC--CCC-CCChhccCCCCccEEEcCCcccc--ccCCCCC--ccc
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKN--RFF-SLPASINLLSKLWIIELEECQRL--QSLPQLP--SNI 79 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N--~~~-~LP~si~~Ls~L~~L~Ls~c~~l--~~lP~lp--~sL 79 (341)
+..|+.|.+.++.++. -..+..|++|+.|.+|.| .++ .++.....+++|++|++++|++. .+++.++ .+|
T Consensus 42 ~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3456677777777752 235667888999999999 444 66666666799999999999874 2333332 467
Q ss_pred cccccccccccC
Q 039899 80 EQVQVNGCASLG 91 (341)
Q Consensus 80 ~~L~~~~c~sL~ 91 (341)
..|++.+|....
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 778888887655
No 44
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.0072 Score=55.83 Aligned_cols=66 Identities=27% Similarity=0.339 Sum_probs=51.0
Q ss_pred CCCCCCCCcEEeccCC--CCCCCCCCccccCCCCCcEEEccCCCCCC---CChhccCCCCccEEEcCCccccc
Q 039899 3 SLLGLCSLTKLDISDC--NLGEGAIPSDIGNICSLKELYLSKNRFFS---LPASINLLSKLWIIELEECQRLQ 70 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~--~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~---LP~si~~Ls~L~~L~Ls~c~~l~ 70 (341)
.+..|++|+.|.+|.| .+. +.++.....+++|++|+|++|.++. ++ .+..+.+|..|++.+|.-.+
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc
Confidence 3566788999999999 666 5666666667999999999998884 33 35667788899999987653
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0021 Score=63.26 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCCCCcEEeccCCCCCCCCCCc--cccCCCCCcEEEccCCCCC---CCChhccCCCCccEEEcCCcccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPS--DIGNICSLKELYLSKNRFF---SLPASINLLSKLWIIELEECQRL 69 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~--~i~~L~~L~~L~Ls~N~~~---~LP~si~~Ls~L~~L~Ls~c~~l 69 (341)
++.+|+...|.++.... .+. ....+++++.||||+|-|. ++-.-+.+|++|+.|+|+.|++.
T Consensus 119 n~kkL~~IsLdn~~V~~--~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVED--AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hHHhhhheeecCccccc--cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 45566666676666632 332 4555667777777777655 22233456667777777776664
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.71 E-value=0.0012 Score=55.83 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=55.0
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccC-CCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccc
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGN-ICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ 70 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~-L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~ 70 (341)
.+...|+..+|++|.+.+ +|+.+.. .+.++.|+|++|.++.+|..+..++.|+.|+++.|++..
T Consensus 50 ~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred hCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc
Confidence 345668888999999964 9988755 458999999999999999999999999999999999864
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.65 E-value=0.0021 Score=66.99 Aligned_cols=58 Identities=26% Similarity=0.324 Sum_probs=35.2
Q ss_pred CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccc
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQR 68 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~ 68 (341)
++.|+.|||+.|++.+ +- .+..++.|++|||+.|.+..+|. +...+ +|+.|.+++|.+
T Consensus 186 l~ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL 244 (1096)
T ss_pred HHHhhhhccchhhhhh--hH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHH
Confidence 4556667777777653 32 56666777777777777776664 22222 266666666654
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.58 E-value=0.014 Score=52.30 Aligned_cols=58 Identities=19% Similarity=0.345 Sum_probs=42.9
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccC-CCCccEEEcCCcccc
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINL-LSKLWIIELEECQRL 69 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~-Ls~L~~L~Ls~c~~l 69 (341)
....+||++|.+. .++ .+..++.|.+|.|+.|.|+.|-+.+.. +++|..|.|.+|.+.
T Consensus 43 ~~d~iDLtdNdl~--~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchh--hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 4567888888884 243 577788888888888888877666655 456888888887763
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.46 E-value=0.0053 Score=60.97 Aligned_cols=63 Identities=25% Similarity=0.347 Sum_probs=53.5
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ 70 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~ 70 (341)
+..+++|++|+|++|.|.. +. .+..++.|+.|++++|.++.++ .+..+..|+.+++++|....
T Consensus 114 l~~~~~L~~L~ls~N~I~~--i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITK--LE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred hhhhhcchheecccccccc--cc-chhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhh
Confidence 5678999999999999973 43 5677888999999999999887 56669999999999998864
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.11 E-value=0.0068 Score=65.82 Aligned_cols=65 Identities=32% Similarity=0.475 Sum_probs=55.2
Q ss_pred CC-CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCcc
Q 039899 1 LP-SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQ 67 (341)
Q Consensus 1 LP-sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~ 67 (341)
|| +++.|-+|++|+|+++.+.. +|..+++|..|.+|++..+... .+|.-+..|++|++|.+..-.
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred CChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 56 57789999999999999975 9999999999999999988755 555556669999999987643
No 51
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.11 E-value=0.0059 Score=34.68 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=17.9
Q ss_pred CCcEEeccCCCCCCCCCCccccCC
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNI 32 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L 32 (341)
+|++|||++|++++ +|+++++|
T Consensus 1 ~L~~Ldls~n~l~~--ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS--IPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESE--EGTTTTT-
T ss_pred CccEEECCCCcCEe--CChhhcCC
Confidence 58999999999974 99887654
No 52
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.56 E-value=0.021 Score=30.35 Aligned_cols=14 Identities=57% Similarity=0.698 Sum_probs=4.8
Q ss_pred CcEEEccCCCCCCC
Q 039899 35 LKELYLSKNRFFSL 48 (341)
Q Consensus 35 L~~L~Ls~N~~~~L 48 (341)
|+.|+|++|.++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.10 E-value=0.041 Score=58.35 Aligned_cols=59 Identities=25% Similarity=0.370 Sum_probs=31.3
Q ss_pred CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC--hhccCCCCccEEEcCCcc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP--ASINLLSKLWIIELEECQ 67 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP--~si~~Ls~L~~L~Ls~c~ 67 (341)
++++|..||+|+++++. + ..++.|.+|+.|.+.+=.|..-+ ..+.+|++|+.||+|.-+
T Consensus 171 sFpNL~sLDIS~TnI~n--l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISN--L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCccceeecCCCCccC--c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 45566666666666642 2 44555555555555544444322 134555666666665443
No 54
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.63 E-value=0.06 Score=31.53 Aligned_cols=21 Identities=43% Similarity=0.592 Sum_probs=15.7
Q ss_pred CCCCcEEEccCCCCCCCChhc
Q 039899 32 ICSLKELYLSKNRFFSLPASI 52 (341)
Q Consensus 32 L~~L~~L~Ls~N~~~~LP~si 52 (341)
|++|+.|+|++|.++.||..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467788888888888887654
No 55
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.63 E-value=0.06 Score=31.53 Aligned_cols=21 Identities=43% Similarity=0.592 Sum_probs=15.7
Q ss_pred CCCCcEEEccCCCCCCCChhc
Q 039899 32 ICSLKELYLSKNRFFSLPASI 52 (341)
Q Consensus 32 L~~L~~L~Ls~N~~~~LP~si 52 (341)
|++|+.|+|++|.++.||..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467788888888888887654
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.036 Score=54.81 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=36.5
Q ss_pred CCCCcEEeccCCCCCCCCCC--ccccCCCCCcEEEccCCCCC--CCChh-----ccCCCCccEEEcCCccc
Q 039899 7 LCSLTKLDISDCNLGEGAIP--SDIGNICSLKELYLSKNRFF--SLPAS-----INLLSKLWIIELEECQR 68 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP--~~i~~L~~L~~L~Ls~N~~~--~LP~s-----i~~Ls~L~~L~Ls~c~~ 68 (341)
++.|+.|||++|++.+ ++ ..++.|+.|..|+++.+.+. .+|+. -..+.+|++|+++.|+.
T Consensus 245 ~~~L~~LdLs~N~li~--~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLID--FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhHHhhccccCCcccc--cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 4456666777666654 44 44666677777777776666 33432 23456677777777665
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.03 E-value=0.019 Score=60.11 Aligned_cols=64 Identities=28% Similarity=0.274 Sum_probs=52.1
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ 70 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~ 70 (341)
+..++.|++|||++|.+.. +|.--..--.|+.|.|.+|.+++|- .|.+|.+|+.||+++|-+.+
T Consensus 205 Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred HHhcccccccccccchhcc--ccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccchhHhhhhc
Confidence 4568899999999999964 7753222224999999999999886 79999999999999997754
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=0.0074 Score=56.55 Aligned_cols=58 Identities=28% Similarity=0.281 Sum_probs=40.6
Q ss_pred CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR 68 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~ 68 (341)
|.+.+.|+.-+|.|.+ | +-...|+.|+.|.||-|.|++|- .+..+++|+.|.|..|.+
T Consensus 18 l~~vkKLNcwg~~L~D--I-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--I-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCI 75 (388)
T ss_pred HHHhhhhcccCCCccH--H-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccc
Confidence 4566777888887764 2 23456777888888888877764 466777777777777655
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.46 E-value=0.14 Score=45.93 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=40.8
Q ss_pred CcEEeccCCCCCCCCCCccccCC-CCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Cccccccccc
Q 039899 10 LTKLDISDCNLGEGAIPSDIGNI-CSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQVN 85 (341)
Q Consensus 10 L~~LdLs~~~l~eg~iP~~i~~L-~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~~~ 85 (341)
-+.++|.+..+. .-..+|.+ -+...+||+.|.+..++ .+..+.+|.+|.|++|++..-=|.+ .+.+..|.+.
T Consensus 21 e~e~~LR~lkip---~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP---VIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc---chhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 445666665543 22223332 25667777777777665 4666777777777777776443332 2344444443
No 60
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.02 E-value=0.088 Score=27.93 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=10.8
Q ss_pred CCCcEEeccCCCCCCCCCC
Q 039899 8 CSLTKLDISDCNLGEGAIP 26 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP 26 (341)
++|+.|+|++|++.+ +|
T Consensus 1 ~~L~~L~l~~n~L~~--lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTS--LP 17 (17)
T ss_dssp TT-SEEEETSS--SS--E-
T ss_pred CccCEEECCCCCCCC--Cc
Confidence 479999999999864 65
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.70 E-value=0.091 Score=55.78 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=41.0
Q ss_pred CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR 68 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~ 68 (341)
||+|+.|.+++=.+..+.+-.-..++++|..||+|+.+++.+ ..|++|.+|+.|.+.+=.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~ 207 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEF 207 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCC
Confidence 567777777765554222233345677888888888888877 6788888888877765433
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.91 E-value=0.27 Score=46.76 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=17.7
Q ss_pred CCcEEeccCCCCCC-CCCCccccCCCCCcEEEccCCCCC
Q 039899 9 SLTKLDISDCNLGE-GAIPSDIGNICSLKELYLSKNRFF 46 (341)
Q Consensus 9 ~L~~LdLs~~~l~e-g~iP~~i~~L~~L~~L~Ls~N~~~ 46 (341)
.++.|||.+|.+++ ..|-.-+.+|+.|+.|+|+.|.+.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 34555555555542 001122344555555555555544
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.37 E-value=0.036 Score=52.06 Aligned_cols=84 Identities=24% Similarity=0.219 Sum_probs=62.0
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh--hccCCCCccEEEcCCccccccCCCCCcccccc
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA--SINLLSKLWIIELEECQRLQSLPQLPSNIEQV 82 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~--si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L 82 (341)
.+|+.|++|.||-|.++. + ..+...+.|++|+|..|.|..|-+ -+.+|++|+.|+|..|..-|. -+++-+.-
T Consensus 38 ~kMp~lEVLsLSvNkIss--L-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~---ag~nYR~~ 111 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISS--L-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE---AGQNYRRK 111 (388)
T ss_pred HhcccceeEEeecccccc--c-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc---cchhHHHH
Confidence 368899999999999973 3 457788999999999999987764 578999999999999988763 33333322
Q ss_pred ccccccccCcch
Q 039899 83 QVNGCASLGTLS 94 (341)
Q Consensus 83 ~~~~c~sL~~l~ 94 (341)
.+.-+++|+.++
T Consensus 112 VLR~LPnLkKLD 123 (388)
T KOG2123|consen 112 VLRVLPNLKKLD 123 (388)
T ss_pred HHHHcccchhcc
Confidence 223344555554
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.60 E-value=0.2 Score=47.69 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=50.8
Q ss_pred CcEEeccCCCCCCCCCCcccc-CCCCCcEEEccCCCCC---CCChhccCCCCccEEEcCCccccccCCCCC---cccccc
Q 039899 10 LTKLDISDCNLGEGAIPSDIG-NICSLKELYLSKNRFF---SLPASINLLSKLWIIELEECQRLQSLPQLP---SNIEQV 82 (341)
Q Consensus 10 L~~LdLs~~~l~eg~iP~~i~-~L~~L~~L~Ls~N~~~---~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---~sL~~L 82 (341)
++.|-+.+|.|-....-..|+ ..+.++.|||.+|.|+ +|-+-+.+|+.|+.|+|+.|++...|..+| .+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 335555566553101111233 3567899999999998 666677899999999999999987777766 344444
Q ss_pred cc
Q 039899 83 QV 84 (341)
Q Consensus 83 ~~ 84 (341)
.+
T Consensus 127 VL 128 (418)
T KOG2982|consen 127 VL 128 (418)
T ss_pred EE
Confidence 44
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=85.97 E-value=0.17 Score=48.83 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=51.3
Q ss_pred CCCCCCCcEEeccCCCCCC-C--CCCccccCCCCCcEEEccCCCCCC-----CChhc-cCCCCccEEEcCCcccccc---
Q 039899 4 LLGLCSLTKLDISDCNLGE-G--AIPSDIGNICSLKELYLSKNRFFS-----LPASI-NLLSKLWIIELEECQRLQS--- 71 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~e-g--~iP~~i~~L~~L~~L~Ls~N~~~~-----LP~si-~~Ls~L~~L~Ls~c~~l~~--- 71 (341)
+...++|++|||.+|.++. | .+...+..+++|+.|+++.+.+.. +-..+ ...++|+.|.|.+|.+.+.
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 4456788888888887752 1 133456777888888888887762 11112 2356788888888876542
Q ss_pred -----CCCCCccccccccccc
Q 039899 72 -----LPQLPSNIEQVQVNGC 87 (341)
Q Consensus 72 -----lP~lp~sL~~L~~~~c 87 (341)
+-+ -+.|..|++.+|
T Consensus 289 ~la~~~~e-k~dL~kLnLngN 308 (382)
T KOG1909|consen 289 ALAACMAE-KPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHhc-chhhHHhcCCcc
Confidence 011 345666666665
No 66
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.55 E-value=0.64 Score=27.01 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=17.6
Q ss_pred CCCCcEEeccCCCCCCCCCCccc
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDI 29 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i 29 (341)
|++|+.|+|++|++.. +|...
T Consensus 1 L~~L~~L~L~~N~l~~--lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSS--LPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCc--CCHHH
Confidence 5789999999999965 88754
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.55 E-value=0.64 Score=27.01 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=17.6
Q ss_pred CCCCcEEeccCCCCCCCCCCccc
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDI 29 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i 29 (341)
|++|+.|+|++|++.. +|...
T Consensus 1 L~~L~~L~L~~N~l~~--lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSS--LPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCc--CCHHH
Confidence 5789999999999965 88754
No 68
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.36 E-value=0.87 Score=27.05 Aligned_cols=17 Identities=59% Similarity=0.770 Sum_probs=11.6
Q ss_pred CCcEEEccCCCCCCCCh
Q 039899 34 SLKELYLSKNRFFSLPA 50 (341)
Q Consensus 34 ~L~~L~Ls~N~~~~LP~ 50 (341)
+|+.|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777777764
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.38 E-value=0.12 Score=49.14 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=35.8
Q ss_pred CcEEeccCCCCCCCCCCccccCCCCCcEEEccCC-CCC--CCChhccCCCCccEEEcCCccccccCC-----CCCccccc
Q 039899 10 LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKN-RFF--SLPASINLLSKLWIIELEECQRLQSLP-----QLPSNIEQ 81 (341)
Q Consensus 10 L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N-~~~--~LP~si~~Ls~L~~L~Ls~c~~l~~lP-----~lp~sL~~ 81 (341)
|+.|.|.++.+. ..|-..|..=.+|+.|+|+++ .|+ .+.--+.+++.|..|+|+.|-.....= .+-+.|+.
T Consensus 212 Lk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 212 LKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhccccccccC-cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 444444444443 223333444455566666554 344 222234555666666666665543221 12345555
Q ss_pred cccccc
Q 039899 82 VQVNGC 87 (341)
Q Consensus 82 L~~~~c 87 (341)
|++++|
T Consensus 291 LNlsG~ 296 (419)
T KOG2120|consen 291 LNLSGY 296 (419)
T ss_pred hhhhhh
Confidence 555554
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=80.00 E-value=1.2 Score=43.18 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=19.0
Q ss_pred CCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCccc
Q 039899 31 NICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQR 68 (341)
Q Consensus 31 ~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~ 68 (341)
..+.|+.+.++.|.|. -+-..+..+++|+.|+|+.|.+
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence 3344555555555444 1122445556666666666554
No 71
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.01 E-value=1.9 Score=25.52 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=9.2
Q ss_pred CCCcEEEccCCCCCC
Q 039899 33 CSLKELYLSKNRFFS 47 (341)
Q Consensus 33 ~~L~~L~Ls~N~~~~ 47 (341)
++|+.|+|+.|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666653
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.89 E-value=0.088 Score=48.37 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=36.4
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR 68 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~ 68 (341)
..+...+.||++.|++.. +-..+.-++.|..|+|+.|.+..+|...+++..++.+++..|..
T Consensus 39 ~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~ 100 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNH 100 (326)
T ss_pred hccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccch
Confidence 344556667777766632 44455555666666666666666666666666666665555444
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=75.36 E-value=1.1 Score=42.68 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=54.4
Q ss_pred CCCcEEeccCCCCCCCC--CCccccCCCCCcEEEccCCC-CC-CCChhccCCCCccEEEcCCccccccCCC------CCc
Q 039899 8 CSLTKLDISDCNLGEGA--IPSDIGNICSLKELYLSKNR-FF-SLPASINLLSKLWIIELEECQRLQSLPQ------LPS 77 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~--iP~~i~~L~~L~~L~Ls~N~-~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~------lp~ 77 (341)
..|+.|+|+++.-.-+. +..-....++|..||||.|. ++ ..-..|.++..|++|.++.|-.. +|+ --+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCc
Confidence 35788999988643110 11112457889999999874 33 34446788999999999999753 443 135
Q ss_pred ccccccccccccc
Q 039899 78 NIEQVQVNGCASL 90 (341)
Q Consensus 78 sL~~L~~~~c~sL 90 (341)
++.+|++.+|-+=
T Consensus 364 sl~yLdv~g~vsd 376 (419)
T KOG2120|consen 364 SLVYLDVFGCVSD 376 (419)
T ss_pred ceEEEEeccccCc
Confidence 7788888887553
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=63.50 E-value=0.21 Score=45.96 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=21.0
Q ss_pred ccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899 29 IGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR 68 (341)
Q Consensus 29 i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~ 68 (341)
|......+.|||+.|.+..+-..+.-++.|..|+++.|..
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~ 77 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQI 77 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhH
Confidence 4444445555555555555555555555555555554443
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=62.39 E-value=2 Score=42.39 Aligned_cols=84 Identities=25% Similarity=0.338 Sum_probs=42.0
Q ss_pred CCCCCcEEeccCC-CCCCCCCC----ccccCCCCCcEEEccCCC-CCC--CChhccCCCCccEEEcCCcccccc-----C
Q 039899 6 GLCSLTKLDISDC-NLGEGAIP----SDIGNICSLKELYLSKNR-FFS--LPASINLLSKLWIIELEECQRLQS-----L 72 (341)
Q Consensus 6 ~L~~L~~LdLs~~-~l~eg~iP----~~i~~L~~L~~L~Ls~N~-~~~--LP~si~~Ls~L~~L~Ls~c~~l~~-----l 72 (341)
..+.|+.|++++| ... ...| .......+|+.|+|+... ++. +-.-...+++|+.|.+.+|..+.. +
T Consensus 212 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLI-TLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hCchhheecccCccccc-ccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 4566777777763 221 1111 122334667777777765 441 211112256777777776663210 0
Q ss_pred CCCCcccccccccccccc
Q 039899 73 PQLPSNIEQVQVNGCASL 90 (341)
Q Consensus 73 P~lp~sL~~L~~~~c~sL 90 (341)
-.--+.|+.|++..|..+
T Consensus 291 ~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHhcCcccEEeeecCccc
Confidence 011234666666666554
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=61.17 E-value=4.5 Score=22.86 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=5.5
Q ss_pred CCCcEEeccCCCC
Q 039899 8 CSLTKLDISDCNL 20 (341)
Q Consensus 8 ~~L~~LdLs~~~l 20 (341)
++|+.|+|++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3455555555554
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=59.31 E-value=5.7 Score=37.65 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=25.1
Q ss_pred CCCCCcEEEccCCCCC-CCCh----hccCCCCccEEEcCCccc
Q 039899 31 NICSLKELYLSKNRFF-SLPA----SINLLSKLWIIELEECQR 68 (341)
Q Consensus 31 ~L~~L~~L~Ls~N~~~-~LP~----si~~Ls~L~~L~Ls~c~~ 68 (341)
..+.|+..+||.|.|. +.|+ -|..-+.|.+|.|++|.+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 4566777777777777 4443 344556777777777765
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.50 E-value=9.3 Score=22.68 Aligned_cols=13 Identities=54% Similarity=0.616 Sum_probs=7.8
Q ss_pred CCcEEEccCCCCC
Q 039899 34 SLKELYLSKNRFF 46 (341)
Q Consensus 34 ~L~~L~Ls~N~~~ 46 (341)
+|+.|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666554
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.96 E-value=2.2 Score=38.46 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=35.2
Q ss_pred CcEEeccCCCCCCCCCCccccCCCCCcEEEccCCC-CC--CCChhcc-CCCCccEEEcCCccccc
Q 039899 10 LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNR-FF--SLPASIN-LLSKLWIIELEECQRLQ 70 (341)
Q Consensus 10 L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~-~~--~LP~si~-~Ls~L~~L~Ls~c~~l~ 70 (341)
++.+|-+++.|. ..=-..+.++++|+.|.+..+. +. .|- -++ -.++|+.|+|++|....
T Consensus 103 IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 103 IEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred EEEEecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHH-HhcccccchheeeccCCCeec
Confidence 566777777775 2212346677777777776653 21 111 111 24678888888887643
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=52.71 E-value=7.5 Score=36.85 Aligned_cols=66 Identities=26% Similarity=0.316 Sum_probs=47.8
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCcc----ccCCCCCcEEEccCCCCCCCC-hhcc-------------CCCCccEEEc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSD----IGNICSLKELYLSKNRFFSLP-ASIN-------------LLSKLWIIEL 63 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~----i~~L~~L~~L~Ls~N~~~~LP-~si~-------------~Ls~L~~L~L 63 (341)
|++.+++.|+..+||+|.+. -..|.. |.+-+.|++|.|++|.+-.+- ..|+ +-+.|+....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg-~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFG-SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccC-cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 56778899999999999997 456655 566788999999999877332 2232 3356777666
Q ss_pred CCccc
Q 039899 64 EECQR 68 (341)
Q Consensus 64 s~c~~ 68 (341)
..|++
T Consensus 165 grNRl 169 (388)
T COG5238 165 GRNRL 169 (388)
T ss_pred ccchh
Confidence 66654
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=42.14 E-value=44 Score=26.36 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=34.3
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCC
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEE 65 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~ 65 (341)
++.+.++|+.+.+.. .+. .|+. .+...++|+.+.+.++ +..++. .+.++.+|+.+.+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~--~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK--KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHhCCCCCCEEEECC-Cee--EeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 356677888888875 443 2654 4677778999998775 777775 567777888888864
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=40.74 E-value=51 Score=26.02 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=37.9
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEEC 66 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c 66 (341)
++.++++|+.+.+..+ +. .++. .+.+.++|+.+.+.. .+..++. .+..+++|+.+.+..+
T Consensus 30 ~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred hccccccccccccccc-cc--ccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence 3667778999999885 54 3664 467777899999975 6666664 5666899999988653
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=31.63 E-value=33 Score=19.65 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=8.0
Q ss_pred CCccEEEcCCccc
Q 039899 56 SKLWIIELEECQR 68 (341)
Q Consensus 56 s~L~~L~Ls~c~~ 68 (341)
++|+.|+|++|..
T Consensus 2 ~~L~~L~l~~C~~ 14 (26)
T smart00367 2 PNLRELDLSGCTN 14 (26)
T ss_pred CCCCEeCCCCCCC
Confidence 4566666666654
No 84
>PRK06758 hypothetical protein; Provisional
Probab=31.57 E-value=20 Score=28.11 Aligned_cols=37 Identities=41% Similarity=0.916 Sum_probs=22.7
Q ss_pred eeeecccccCchhhh-HHHhccCceehhhHhhhhhh-hcHHHHhh
Q 039899 298 VWYRLDDYLDENQVE-DFYQTTNQWTWFIDRLSEFC-TDAKELLQ 340 (341)
Q Consensus 298 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 340 (341)
+.|....|--.-|+. .||. .-|||||. || .|.-.|||
T Consensus 76 isysmtnytlplqlssaffh--glwtwfia----fcladvfnllq 114 (128)
T PRK06758 76 ISYSMTNYTLPLQLSSAFFH--GLWTWFIA----FCLADVFNLLQ 114 (128)
T ss_pred eeeeeeccccchhHHHHHHh--hHHHHHHH----HHHHHHHHHhc
Confidence 456666665555554 4554 57999994 66 35555555
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=27.80 E-value=15 Score=36.20 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=43.7
Q ss_pred CCCCCcEEeccCCC-CCCCCCCcccc-CCCCCcEEEccCCC-CC--CCChhccCCCCccEEEcCCcccc
Q 039899 6 GLCSLTKLDISDCN-LGEGAIPSDIG-NICSLKELYLSKNR-FF--SLPASINLLSKLWIIELEECQRL 69 (341)
Q Consensus 6 ~L~~L~~LdLs~~~-l~eg~iP~~i~-~L~~L~~L~Ls~N~-~~--~LP~si~~Ls~L~~L~Ls~c~~l 69 (341)
.++.|+.|+++++. +++-.+ ..+. ..++|+.|.+.++. ++ .+-.-...++.|+.|++++|...
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l-~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGL-SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhH-HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 45789999999998 553111 2222 36789999977776 44 34344556788999999999875
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.42 E-value=27 Score=31.60 Aligned_cols=60 Identities=13% Similarity=0.318 Sum_probs=45.3
Q ss_pred CCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccc-----cCCCCCccccccccccccccCcc
Q 039899 34 SLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQ-----SLPQLPSNIEQVQVNGCASLGTL 93 (341)
Q Consensus 34 ~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~-----~lP~lp~sL~~L~~~~c~sL~~l 93 (341)
.++.++-++..|...- +.+.++.+++.|.+.+|+... .|-.+.++|+.|++++|+..+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 3678888887766332 357788899999999998654 24457789999999999877654
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.50 E-value=52 Score=40.32 Aligned_cols=31 Identities=39% Similarity=0.605 Sum_probs=26.3
Q ss_pred eccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCC
Q 039899 14 DISDCNLGEGAIPSD-IGNICSLKELYLSKNRFF 46 (341)
Q Consensus 14 dLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~ 46 (341)
||++|+|.. ||.. |..|++|+.|+|++|.+.
T Consensus 1 DLSnN~Lst--Lp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIST--IEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCc--cChHHhccCCCceEEEeeCCccc
Confidence 689999964 7754 678999999999999887
No 88
>cd07467 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinase-like orphan receptor 1. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor 1 (Ror1), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=22.59 E-value=49 Score=28.04 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=32.7
Q ss_pred hhhceecceeeecccccCchhhhHHHhccCceehhhHhhhhhhhcHHH
Q 039899 290 QNQVKLNNVWYRLDDYLDENQVEDFYQTTNQWTWFIDRLSEFCTDAKE 337 (341)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (341)
.+.+.=++|||. -+.+...+|.-..++-.|.+-++-+|.+|..|.+
T Consensus 14 ~~~L~~~~Vf~~--~~~~~~~~E~~l~aa~~~i~~s~~vs~~Cr~~A~ 59 (142)
T cd07467 14 ARFIGNRTIYME--SLHMQGEIENQITAAFTMIGTSSHLSDKCSQFAI 59 (142)
T ss_pred HHHhCCCeEEEe--CCCCHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 455666789985 3446666777777766666667789999988764
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.09 E-value=66 Score=39.50 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=18.2
Q ss_pred EccCCCCCCCCh-hccCCCCccEEEcCCccc
Q 039899 39 YLSKNRFFSLPA-SINLLSKLWIIELEECQR 68 (341)
Q Consensus 39 ~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~ 68 (341)
||++|+|+.||. .|..|.+|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 456666666664 455566666666665543
Done!