Query 039899
Match_columns 341
No_of_seqs 268 out of 2214
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.3 7.8E-12 2.7E-16 118.3 8.2 107 7-116 182-291 (328)
2 4fcg_A Uncharacterized protein 99.2 5.9E-12 2E-16 119.1 6.9 108 3-116 99-220 (328)
3 3rgz_A Protein brassinosteroid 99.2 3.6E-11 1.2E-15 126.1 8.6 69 4-73 486-555 (768)
4 1ogq_A PGIP-2, polygalacturona 99.1 1.2E-11 4.3E-16 115.9 3.0 138 3-142 71-215 (313)
5 3rgz_A Protein brassinosteroid 99.1 1.3E-10 4.3E-15 122.0 9.1 98 3-123 627-725 (768)
6 1ogq_A PGIP-2, polygalacturona 99.1 7.5E-11 2.6E-15 110.6 6.4 83 3-86 96-183 (313)
7 4eco_A Uncharacterized protein 99.1 6.1E-11 2.1E-15 121.9 5.1 136 3-144 201-372 (636)
8 3rfs_A Internalin B, repeat mo 99.0 5.5E-10 1.9E-14 102.4 9.3 83 2-87 57-143 (272)
9 1wwl_A Monocyte differentiatio 99.0 3E-10 1E-14 106.2 6.7 112 5-119 118-245 (312)
10 3m19_A Variable lymphocyte rec 99.0 1.1E-09 3.7E-14 99.1 10.0 60 9-69 36-96 (251)
11 4eco_A Uncharacterized protein 99.0 4.7E-10 1.6E-14 115.3 7.8 115 25-141 198-347 (636)
12 2je0_A Acidic leucine-rich nuc 99.0 6.6E-10 2.3E-14 92.2 7.3 108 6-116 15-127 (149)
13 3e6j_A Variable lymphocyte rec 99.0 2.5E-09 8.5E-14 95.8 10.6 107 7-118 39-151 (229)
14 2o6s_A Variable lymphocyte rec 99.0 6E-10 2.1E-14 97.7 6.4 78 8-86 28-109 (208)
15 4b8c_D Glucose-repressible alc 98.9 5.6E-10 1.9E-14 116.8 6.3 64 4-69 220-283 (727)
16 4b8c_D Glucose-repressible alc 98.9 4.6E-10 1.6E-14 117.4 5.4 115 3-120 242-359 (727)
17 4ezg_A Putative uncharacterize 98.9 1.2E-09 4E-14 95.4 6.6 83 3-88 61-147 (197)
18 4ezg_A Putative uncharacterize 98.9 7E-10 2.4E-14 96.8 4.9 85 2-87 82-169 (197)
19 1p9a_G Platelet glycoprotein I 98.9 4.8E-09 1.6E-13 97.4 10.9 137 3-145 50-192 (290)
20 2v9t_B SLIT homolog 2 protein 98.9 4.5E-09 1.6E-13 93.5 10.1 107 8-119 32-145 (220)
21 2v70_A SLIT-2, SLIT homolog 2 98.9 4.1E-09 1.4E-13 93.8 9.8 109 9-120 33-147 (220)
22 3rfs_A Internalin B, repeat mo 98.9 4.4E-09 1.5E-13 96.3 10.2 115 2-119 79-198 (272)
23 1ozn_A Reticulon 4 receptor; N 98.9 5.5E-09 1.9E-13 95.9 10.7 59 8-67 32-91 (285)
24 1p9a_G Platelet glycoprotein I 98.9 3.3E-09 1.1E-13 98.5 9.2 108 8-120 31-142 (290)
25 2ell_A Acidic leucine-rich nuc 98.9 1.2E-09 3.9E-14 92.6 5.6 108 6-116 22-134 (168)
26 2z66_A Variable lymphocyte rec 98.9 2.7E-09 9.2E-14 98.9 8.4 66 4-70 122-189 (306)
27 1w8a_A SLIT protein; signaling 98.9 1.8E-09 6.2E-14 94.0 6.0 106 9-119 30-143 (192)
28 3zyi_A Leucine-rich repeat-con 98.9 3.7E-09 1.3E-13 103.7 8.9 90 3-94 94-188 (452)
29 4glp_A Monocyte differentiatio 98.9 5.2E-09 1.8E-13 97.5 9.3 114 5-120 114-242 (310)
30 4ecn_A Leucine-rich repeat pro 98.9 3.7E-09 1.3E-13 112.6 8.9 66 4-73 569-635 (876)
31 2z7x_B TOLL-like receptor 1, v 98.9 4.1E-09 1.4E-13 104.8 8.5 107 5-115 321-434 (520)
32 1dce_A Protein (RAB geranylger 98.9 3.6E-09 1.2E-13 107.6 8.3 105 9-119 442-550 (567)
33 3m19_A Variable lymphocyte rec 98.8 1.1E-08 3.9E-13 92.3 10.5 114 3-119 54-172 (251)
34 4ecn_A Leucine-rich repeat pro 98.8 1.7E-09 5.9E-14 115.2 5.9 43 25-67 481-526 (876)
35 2o6q_A Variable lymphocyte rec 98.8 1.2E-08 4.1E-13 93.2 10.4 60 9-69 38-98 (270)
36 1ozn_A Reticulon 4 receptor; N 98.8 6.5E-09 2.2E-13 95.4 8.4 115 3-120 75-195 (285)
37 2z7x_B TOLL-like receptor 1, v 98.8 4.6E-09 1.6E-13 104.4 7.8 108 3-115 343-457 (520)
38 3zyj_A Leucine-rich repeat-con 98.8 9.8E-09 3.3E-13 100.3 9.8 89 3-92 83-175 (440)
39 2o6s_A Variable lymphocyte rec 98.8 1.3E-08 4.4E-13 89.1 9.4 112 4-119 48-165 (208)
40 2z80_A TOLL-like receptor 2, v 98.8 3.9E-09 1.3E-13 100.0 5.9 112 4-119 72-191 (353)
41 3vq2_A TLR4, TOLL-like recepto 98.8 1.1E-08 3.7E-13 103.6 9.4 84 3-87 51-138 (606)
42 2ell_A Acidic leucine-rich nuc 98.8 9.3E-09 3.2E-13 87.0 7.4 107 4-115 45-160 (168)
43 2o6r_A Variable lymphocyte rec 98.8 1.5E-08 5.3E-13 86.4 8.8 108 7-119 27-141 (177)
44 1h6t_A Internalin B; cell adhe 98.8 9.3E-09 3.2E-13 95.4 8.0 110 2-119 62-173 (291)
45 1xeu_A Internalin C; cellular 98.8 5.2E-09 1.8E-13 95.8 6.0 106 3-116 36-142 (263)
46 2z66_A Variable lymphocyte rec 98.8 1.9E-09 6.3E-14 100.0 3.0 125 3-128 145-274 (306)
47 4g8a_A TOLL-like receptor 4; l 98.8 7.1E-09 2.4E-13 104.4 7.4 114 3-120 71-191 (635)
48 2z62_A TOLL-like receptor 4, v 98.8 2.7E-08 9.2E-13 90.8 10.7 113 3-118 47-165 (276)
49 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 8.5E-09 2.9E-13 103.9 7.9 133 5-143 350-491 (562)
50 2v70_A SLIT-2, SLIT homolog 2 98.8 9.6E-09 3.3E-13 91.4 7.3 121 4-128 53-179 (220)
51 1h6u_A Internalin H; cell adhe 98.8 1.3E-08 4.4E-13 95.1 8.3 81 2-87 57-139 (308)
52 3cvr_A Invasion plasmid antige 98.8 2.1E-08 7.3E-13 102.0 10.2 99 7-120 99-197 (571)
53 3zyi_A Leucine-rich repeat-con 98.8 2.3E-08 8E-13 98.0 10.1 84 3-87 118-206 (452)
54 2je0_A Acidic leucine-rich nuc 98.8 5.6E-09 1.9E-13 86.6 4.8 88 3-94 37-129 (149)
55 1m9s_A Internalin B; cell inva 98.8 9.4E-09 3.2E-13 105.3 7.5 81 2-87 59-141 (605)
56 3zyj_A Leucine-rich repeat-con 98.8 2.3E-08 8E-13 97.7 10.0 113 3-120 107-225 (440)
57 1w8a_A SLIT protein; signaling 98.7 3.3E-08 1.1E-12 85.9 9.7 107 9-121 9-121 (192)
58 2z81_A CD282 antigen, TOLL-lik 98.7 9.9E-09 3.4E-13 102.4 7.1 104 4-115 357-464 (549)
59 2o6q_A Variable lymphocyte rec 98.7 3.7E-08 1.3E-12 89.9 10.3 113 3-119 56-174 (270)
60 2ifg_A High affinity nerve gro 98.7 1.8E-08 6.1E-13 95.1 8.4 85 1-86 24-112 (347)
61 3v47_A TOLL-like receptor 5B a 98.7 1.6E-08 5.6E-13 98.4 8.4 79 8-87 275-357 (455)
62 2z81_A CD282 antigen, TOLL-lik 98.7 7.2E-09 2.4E-13 103.5 5.9 116 3-120 45-166 (549)
63 2ft3_A Biglycan; proteoglycan, 98.7 1.4E-08 4.6E-13 95.4 7.5 77 8-86 54-132 (332)
64 1jl5_A Outer protein YOPM; leu 98.7 3E-08 1E-12 97.9 10.3 106 1-116 146-251 (454)
65 3vq2_A TLR4, TOLL-like recepto 98.7 3.4E-08 1.1E-12 99.9 10.9 115 3-119 75-198 (606)
66 1xku_A Decorin; proteoglycan, 98.7 1.5E-08 5.1E-13 94.9 7.6 78 8-87 52-131 (330)
67 2wfh_A SLIT homolog 2 protein 98.7 4.6E-08 1.6E-12 85.3 10.2 62 8-71 31-93 (193)
68 3t6q_A CD180 antigen; protein- 98.7 2.8E-08 9.7E-13 100.4 10.0 136 4-142 274-418 (606)
69 2r9u_A Variable lymphocyte rec 98.7 4.7E-08 1.6E-12 83.9 9.8 61 8-69 33-94 (174)
70 3v47_A TOLL-like receptor 5B a 98.7 1.2E-08 4.3E-13 99.3 6.8 123 3-128 294-422 (455)
71 1h6u_A Internalin H; cell adhe 98.7 2.1E-08 7.2E-13 93.7 7.9 107 3-117 80-188 (308)
72 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 3.8E-08 1.3E-12 99.0 10.3 108 3-115 372-486 (562)
73 1xeu_A Internalin C; cellular 98.7 3.2E-08 1.1E-12 90.4 8.5 108 1-117 56-165 (263)
74 2o6r_A Variable lymphocyte rec 98.7 6.1E-08 2.1E-12 82.7 9.6 83 4-87 48-134 (177)
75 4glp_A Monocyte differentiatio 98.7 2.7E-09 9.1E-14 99.5 1.0 108 5-115 142-264 (310)
76 3oja_B Anopheles plasmodium-re 98.7 1.5E-08 5.2E-13 103.1 6.7 63 6-69 73-136 (597)
77 3e6j_A Variable lymphocyte rec 98.7 5.6E-08 1.9E-12 86.9 9.5 109 3-116 59-173 (229)
78 3g39_A Variable lymphocyte rec 98.7 7E-08 2.4E-12 82.3 9.6 61 8-69 30-91 (170)
79 4fmz_A Internalin; leucine ric 98.7 3.6E-08 1.2E-12 92.7 8.3 60 5-68 196-255 (347)
80 2z62_A TOLL-like receptor 4, v 98.7 2.2E-08 7.7E-13 91.3 6.6 115 3-120 71-195 (276)
81 4g8a_A TOLL-like receptor 4; l 98.7 3.7E-08 1.3E-12 99.2 8.7 111 4-115 465-580 (635)
82 2xot_A Amphoterin-induced prot 98.7 3.7E-08 1.3E-12 94.0 8.3 64 6-70 62-126 (361)
83 1a9n_A U2A', U2A'; complex (nu 98.7 2.8E-08 9.7E-13 84.9 6.7 108 2-115 13-126 (176)
84 2wfh_A SLIT homolog 2 protein 98.7 5.3E-08 1.8E-12 84.9 8.5 67 3-70 49-116 (193)
85 2z63_A TOLL-like receptor 4, v 98.7 1.6E-08 5.5E-13 101.1 5.8 66 5-71 418-485 (570)
86 1xku_A Decorin; proteoglycan, 98.7 6.5E-08 2.2E-12 90.5 9.4 63 4-69 72-134 (330)
87 2id5_A Lingo-1, leucine rich r 98.7 3.4E-08 1.2E-12 97.1 7.8 82 3-85 51-136 (477)
88 3j0a_A TOLL-like receptor 5; m 98.6 1.7E-08 5.9E-13 106.8 5.9 83 3-86 43-132 (844)
89 3t6q_A CD180 antigen; protein- 98.6 5.3E-08 1.8E-12 98.5 9.2 83 3-86 52-138 (606)
90 2xot_A Amphoterin-induced prot 98.6 5.7E-08 2E-12 92.6 8.8 110 3-115 83-202 (361)
91 3oja_B Anopheles plasmodium-re 98.6 6.1E-08 2.1E-12 98.6 9.5 84 3-87 94-181 (597)
92 4fmz_A Internalin; leucine ric 98.6 4.2E-08 1.4E-12 92.2 7.7 107 2-115 60-168 (347)
93 1jl5_A Outer protein YOPM; leu 98.6 7.4E-08 2.5E-12 95.1 9.7 103 2-116 189-291 (454)
94 2xwt_C Thyrotropin receptor; s 98.6 3E-08 1E-12 88.7 6.2 55 9-65 32-89 (239)
95 3o6n_A APL1; leucine-rich repe 98.6 2.8E-08 9.6E-13 95.2 6.3 81 5-87 66-151 (390)
96 1wwl_A Monocyte differentiatio 98.6 2.1E-08 7.3E-13 93.5 5.2 108 6-115 93-214 (312)
97 1a9n_A U2A', U2A'; complex (nu 98.6 3.9E-08 1.3E-12 84.0 6.4 109 2-115 35-153 (176)
98 2xwt_C Thyrotropin receptor; s 98.6 2.4E-08 8.2E-13 89.3 5.2 109 3-119 75-197 (239)
99 3cvr_A Invasion plasmid antige 98.6 4.5E-08 1.5E-12 99.7 7.8 119 9-145 121-242 (571)
100 1h6t_A Internalin B; cell adhe 98.6 5.2E-08 1.8E-12 90.3 7.5 106 3-116 85-192 (291)
101 3oja_A Leucine-rich immune mol 98.6 1.6E-08 5.6E-13 100.6 4.3 78 6-87 32-109 (487)
102 1ziw_A TOLL-like receptor 3; i 98.6 4.1E-08 1.4E-12 100.7 7.0 65 4-69 45-110 (680)
103 2z63_A TOLL-like receptor 4, v 98.6 1.2E-07 4.2E-12 94.7 10.2 83 3-87 47-134 (570)
104 1dce_A Protein (RAB geranylger 98.6 6.1E-08 2.1E-12 98.5 8.0 84 1-87 456-543 (567)
105 3oja_A Leucine-rich immune mol 98.6 5.5E-08 1.9E-12 96.8 7.5 41 32-72 119-160 (487)
106 3g39_A Variable lymphocyte rec 98.6 9.7E-08 3.3E-12 81.5 7.9 65 3-69 49-115 (170)
107 1m9s_A Internalin B; cell inva 98.6 7.2E-08 2.5E-12 98.8 8.4 105 4-116 83-189 (605)
108 1o6v_A Internalin A; bacterial 98.6 9.1E-08 3.1E-12 94.1 8.6 81 3-87 238-319 (466)
109 3g06_A SSPH2 (leucine-rich rep 98.6 1.2E-07 4.1E-12 97.5 9.2 70 6-84 99-168 (622)
110 2r9u_A Variable lymphocyte rec 98.6 1.3E-07 4.6E-12 81.0 8.0 65 3-69 52-118 (174)
111 2ft3_A Biglycan; proteoglycan, 98.6 1.6E-07 5.6E-12 87.9 9.3 81 3-87 97-182 (332)
112 3o6n_A APL1; leucine-rich repe 98.6 1.7E-07 5.9E-12 89.7 9.5 84 3-87 88-175 (390)
113 3bz5_A Internalin-J, INLJ; leu 98.5 1.6E-07 5.3E-12 92.8 9.2 62 2-69 58-119 (457)
114 3g06_A SSPH2 (leucine-rich rep 98.5 1.4E-07 5E-12 96.8 9.2 71 8-87 61-131 (622)
115 1ziw_A TOLL-like receptor 3; i 98.5 2.1E-07 7.1E-12 95.4 10.4 65 5-71 70-136 (680)
116 2z80_A TOLL-like receptor 2, v 98.5 3.2E-08 1.1E-12 93.6 3.7 108 3-115 95-211 (353)
117 3j0a_A TOLL-like receptor 5; m 98.5 1.3E-07 4.6E-12 100.0 8.8 84 3-87 68-158 (844)
118 3bz5_A Internalin-J, INLJ; leu 98.5 2.2E-07 7.5E-12 91.7 8.9 76 4-86 166-242 (457)
119 2id5_A Lingo-1, leucine rich r 98.5 1.9E-07 6.3E-12 91.8 8.3 84 3-87 123-210 (477)
120 3o53_A Protein LRIM1, AGAP0063 98.5 2E-08 6.8E-13 93.9 1.1 104 6-117 32-135 (317)
121 3o53_A Protein LRIM1, AGAP0063 98.5 1.5E-07 5.2E-12 87.9 7.1 60 8-68 120-181 (317)
122 2v9t_B SLIT homolog 2 protein 98.5 4E-07 1.4E-11 80.8 9.3 110 3-115 51-165 (220)
123 1ds9_A Outer arm dynein; leuci 98.4 1.8E-09 6.2E-14 94.2 -7.4 60 6-68 46-105 (198)
124 1o6v_A Internalin A; bacterial 98.4 3.2E-07 1.1E-11 90.2 6.9 80 4-87 217-297 (466)
125 2ast_B S-phase kinase-associat 98.4 6.6E-08 2.3E-12 90.3 0.8 87 4-91 89-182 (336)
126 2ifg_A High affinity nerve gro 98.3 5.1E-07 1.8E-11 85.0 6.6 66 3-69 51-116 (347)
127 2ast_B S-phase kinase-associat 98.3 2.8E-07 9.5E-12 86.0 4.3 84 5-88 165-258 (336)
128 4ay9_X Follicle-stimulating ho 98.3 5.6E-07 1.9E-11 85.2 5.0 51 8-60 30-83 (350)
129 1ds9_A Outer arm dynein; leuci 98.2 4.8E-08 1.7E-12 85.0 -3.1 104 6-115 16-128 (198)
130 3rw6_A Nuclear RNA export fact 98.1 1.5E-06 5.2E-11 80.1 4.9 66 6-73 168-237 (267)
131 2ca6_A RAN GTPase-activating p 98.1 9.6E-07 3.3E-11 84.4 3.1 66 4-69 56-135 (386)
132 2ca6_A RAN GTPase-activating p 98.1 3.6E-07 1.2E-11 87.4 -0.2 108 8-116 159-288 (386)
133 3goz_A Leucine-rich repeat-con 98.1 5.2E-07 1.8E-11 85.8 0.6 80 8-88 22-120 (362)
134 3goz_A Leucine-rich repeat-con 98.0 1.4E-06 4.7E-11 82.9 1.3 110 5-116 47-181 (362)
135 4ay9_X Follicle-stimulating ho 97.9 8.8E-06 3E-10 77.0 6.2 88 4-94 149-240 (350)
136 1z7x_W Ribonuclease inhibitor; 97.6 1.6E-05 5.4E-10 77.2 1.7 63 6-69 54-126 (461)
137 1z7x_W Ribonuclease inhibitor; 97.3 3.4E-05 1.2E-09 74.8 -0.4 80 7-87 312-408 (461)
138 3un9_A NLR family member X1; l 97.2 5.7E-05 2E-09 72.5 0.6 61 8-68 101-167 (372)
139 3e4g_A ATP synthase subunit S, 97.1 0.00033 1.1E-08 60.3 4.4 83 8-93 61-155 (176)
140 2p1m_B Transport inhibitor res 96.9 0.00023 7.9E-09 71.1 1.5 82 6-88 103-195 (594)
141 3ogk_B Coronatine-insensitive 96.9 0.00019 6.5E-09 71.8 0.7 82 6-88 434-524 (592)
142 3rfe_A Platelet glycoprotein I 96.9 0.002 7E-08 52.3 6.7 57 11-69 11-68 (130)
143 3un9_A NLR family member X1; l 96.8 0.00013 4.4E-09 70.0 -1.2 107 7-115 125-252 (372)
144 3ogk_B Coronatine-insensitive 96.8 0.00034 1.2E-08 69.9 1.6 63 6-69 162-233 (592)
145 3sb4_A Hypothetical leucine ri 96.3 0.0034 1.2E-07 58.3 5.2 56 7-65 225-283 (329)
146 3sb4_A Hypothetical leucine ri 96.3 0.0046 1.6E-07 57.5 5.9 79 3-93 245-326 (329)
147 2p1m_B Transport inhibitor res 96.1 0.00056 1.9E-08 68.3 -1.8 104 6-114 395-518 (594)
148 3rw6_A Nuclear RNA export fact 96.0 0.0048 1.6E-07 56.5 4.3 41 30-70 167-210 (267)
149 1io0_A Tropomodulin; LRR prote 95.8 0.0028 9.7E-08 54.3 1.8 111 4-115 32-164 (185)
150 1io0_A Tropomodulin; LRR prote 95.7 0.0031 1.1E-07 54.0 1.6 83 5-87 62-161 (185)
151 3e4g_A ATP synthase subunit S, 95.7 0.0014 4.9E-08 56.3 -0.6 66 3-70 80-153 (176)
152 2ra8_A Uncharacterized protein 95.3 0.0022 7.5E-08 61.3 -1.1 81 6-87 217-317 (362)
153 2ra8_A Uncharacterized protein 94.6 0.025 8.6E-07 53.9 4.5 14 103-116 280-293 (362)
154 4fdw_A Leucine rich hypothetic 93.7 0.099 3.4E-06 50.2 6.6 55 8-65 157-212 (401)
155 3rfe_A Platelet glycoprotein I 93.5 0.073 2.5E-06 42.9 4.4 36 9-46 32-68 (130)
156 4h09_A Hypothetical leucine ri 89.3 0.41 1.4E-05 44.8 5.4 59 4-65 259-319 (379)
157 4fdw_A Leucine rich hypothetic 88.8 0.7 2.4E-05 44.2 6.7 60 4-69 132-193 (401)
158 4gt6_A Cell surface protein; l 88.1 0.79 2.7E-05 43.2 6.5 58 4-65 261-320 (394)
159 4h09_A Hypothetical leucine ri 87.4 0.84 2.9E-05 42.6 6.2 61 4-68 236-298 (379)
160 1pgv_A TMD-1, tropomodulin TMD 86.2 0.34 1.2E-05 42.1 2.5 82 6-87 39-136 (197)
161 1pgv_A TMD-1, tropomodulin TMD 86.1 0.24 8.2E-06 43.1 1.5 61 7-67 69-137 (197)
162 4fs7_A Uncharacterized protein 79.2 2.7 9.4E-05 39.4 6.0 34 29-63 293-327 (394)
163 4fs7_A Uncharacterized protein 73.2 3.4 0.00012 38.7 4.8 78 3-93 292-371 (394)
164 4gt6_A Cell surface protein; l 70.9 6.9 0.00024 36.6 6.4 79 3-94 283-363 (394)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.26 E-value=7.8e-12 Score=118.27 Aligned_cols=107 Identities=21% Similarity=0.309 Sum_probs=59.9
Q ss_pred CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ 83 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~ 83 (341)
+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.++.+|..++.+++|+.|+|++|.+.+.+|.. .++|+.|+
T Consensus 182 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 555555555555554 2565566666666666666666666666666666666666666666655542 24555566
Q ss_pred cccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899 84 VNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI 116 (341)
Q Consensus 84 ~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~ 116 (341)
+.+|..+..++.....+ ..++.+++++|.+.+
T Consensus 260 L~~n~~~~~~p~~~~~l-~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRL-TQLEKLDLRGCVNLS 291 (328)
T ss_dssp CTTCTTCCBCCTTGGGC-TTCCEEECTTCTTCC
T ss_pred CCCCCchhhcchhhhcC-CCCCEEeCCCCCchh
Confidence 65555444443221111 225566666666554
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.25 E-value=5.9e-12 Score=119.12 Aligned_cols=108 Identities=22% Similarity=0.339 Sum_probs=86.1
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC-------
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL------- 75 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l------- 75 (341)
.+.++++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+|..++++++|+.|+|++|+.++.+|..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 4777899999999999996 4999999999999999999999999999999999999999999999988863
Q ss_pred -----CccccccccccccccCcchhhhHHHHh--hchhccCCCCcccc
Q 039899 76 -----PSNIEQVQVNGCASLGTLSHALKLCKS--IDVEVSKPIPHLSI 116 (341)
Q Consensus 76 -----p~sL~~L~~~~c~sL~~l~~~p~~l~~--~l~~l~l~~n~~~~ 116 (341)
.++|+.|+++++ .++.+ |..+.. .++.+++++|.+.+
T Consensus 177 ~~~~~l~~L~~L~L~~n-~l~~l---p~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWT-GIRSL---PASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp CCEEESTTCCEEEEEEE-CCCCC---CGGGGGCTTCCEEEEESSCCCC
T ss_pred hhhccCCCCCEEECcCC-CcCcc---hHhhcCCCCCCEEEccCCCCCc
Confidence 557777777665 33333 333322 36666777777664
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.17 E-value=3.6e-11 Score=126.10 Aligned_cols=69 Identities=29% Similarity=0.387 Sum_probs=36.0
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCC
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLP 73 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP 73 (341)
+.++++|+.|+|++|++. |.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|++.|.+|
T Consensus 486 l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp GGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred HhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 344445555555555554 445555555555555555555555 455555555555555555555555444
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.14 E-value=1.2e-11 Score=115.95 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=97.3
Q ss_pred CCCCCCCCcEEeccC-CCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCCC---Cc
Q 039899 3 SLLGLCSLTKLDISD-CNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQL---PS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~-~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~ 77 (341)
++.++++|++|+|++ |++. +.+|..++.+++|++|+|++|.++ .+|..+.++++|+.|+|++|++.+.+|.. .+
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hHhCCCCCCeeeCCCCCccc-ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 577889999999995 8887 789999999999999999999998 88989999999999999999988777753 35
Q ss_pred cccccccccccccCcchhhhHHHHhhchhccCCCCccccccCCC--CccccchhccCCCeEEEEcCC
Q 039899 78 NIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGS--EISKCFRYQKEDSAMAVTMPL 142 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg~--~iP~wf~~~~~g~si~~~Lp~ 142 (341)
+|+.|++.++.--..++.....+...++.+++++|.+.+.+|.. ..+ .-.....++.++..+|.
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~ 215 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH
Confidence 67777776653211222222222235778888888888766643 111 11223455666655443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.10 E-value=1.3e-10 Score=122.01 Aligned_cols=98 Identities=28% Similarity=0.279 Sum_probs=84.7
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCCCCccccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQ 81 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~ 81 (341)
.+..+++|+.|||++|+++ |.+|..++.+++|+.|+|++|.++ .+|.+|++|++|+.|+|++|++.|.+|.....+
T Consensus 627 ~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l-- 703 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL-- 703 (768)
T ss_dssp SCSSSBCCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC--
T ss_pred hhhccccccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC--
Confidence 5778899999999999999 999999999999999999999999 999999999999999999999999777533322
Q ss_pred cccccccccCcchhhhHHHHhhchhccCCCCccccccCCCCc
Q 039899 82 VQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSEI 123 (341)
Q Consensus 82 L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg~~i 123 (341)
++ ++.+++++|.++|.+|....
T Consensus 704 ------~~--------------L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 704 ------TM--------------LTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp ------CC--------------CSEEECCSSEEEEECCSSSS
T ss_pred ------CC--------------CCEEECcCCcccccCCCchh
Confidence 22 45678999999998886543
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.10 E-value=7.5e-11 Score=110.58 Aligned_cols=83 Identities=27% Similarity=0.366 Sum_probs=54.4
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCC----CCc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQ----LPS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~----lp~ 77 (341)
++.++++|++|+|++|++. +.+|..++.+++|++|+|++|.++ .+|..++.+++|+.|+|++|++.+.+|. +++
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 174 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174 (313)
T ss_dssp GGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred hHhcCCCCCEEECcCCeeC-CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhh
Confidence 3566677777777777776 566777777777777777777766 6666677777777777777776655553 233
Q ss_pred ccccccccc
Q 039899 78 NIEQVQVNG 86 (341)
Q Consensus 78 sL~~L~~~~ 86 (341)
.|+.|++++
T Consensus 175 ~L~~L~L~~ 183 (313)
T 1ogq_A 175 LFTSMTISR 183 (313)
T ss_dssp TCCEEECCS
T ss_pred cCcEEECcC
Confidence 555555543
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.07 E-value=6.1e-11 Score=121.91 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=102.2
Q ss_pred CCCCCCCCcEEeccCCCCCCCC-----------------CCcccc--CCCCCcEEEccCCCCC-CCChhccCCCCccEEE
Q 039899 3 SLLGLCSLTKLDISDCNLGEGA-----------------IPSDIG--NICSLKELYLSKNRFF-SLPASINLLSKLWIIE 62 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~-----------------iP~~i~--~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~ 62 (341)
+++++++|++|+|++|.+. |. +|..++ .+++|++|+|++|.+. .+|..++++++|+.|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGCTTCCEEEEESCCCC-GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHhcccCCCEEECcCCccc-cccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 4788999999999999997 75 999999 9999999999999987 8999999999999999
Q ss_pred cCCcc-ccc-cCCCC---------CccccccccccccccCcchhhhH--HHHh--hchhccCCCCccccccCCC-Ccccc
Q 039899 63 LEECQ-RLQ-SLPQL---------PSNIEQVQVNGCASLGTLSHALK--LCKS--IDVEVSKPIPHLSIVVPGS-EISKC 126 (341)
Q Consensus 63 Ls~c~-~l~-~lP~l---------p~sL~~L~~~~c~sL~~l~~~p~--~l~~--~l~~l~l~~n~~~~~lPg~-~iP~w 126 (341)
|++|+ +.+ .+|.- .++|+.|+++++ .++. +|. .+.. .++.+++++|.+.|.+|.- ..+..
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~---ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L 355 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT---FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS---CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc---cCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCC
Confidence 99998 776 67642 167888888776 3333 343 3332 4788889999988877721 23333
Q ss_pred chhccCCCeEEEEcCCCC
Q 039899 127 FRYQKEDSAMAVTMPLFL 144 (341)
Q Consensus 127 f~~~~~g~si~~~Lp~~~ 144 (341)
-.....++.++ .+|...
T Consensus 356 ~~L~L~~N~l~-~lp~~l 372 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANF 372 (636)
T ss_dssp SEEECCSSEEE-ECCTTS
T ss_pred CEEECCCCccc-cccHhh
Confidence 33345666666 666543
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.03 E-value=5.5e-10 Score=102.36 Aligned_cols=83 Identities=22% Similarity=0.223 Sum_probs=49.7
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Cc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PS 77 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~ 77 (341)
+.+..+++|+.|+|++|.+. + + +.++.+++|+.|+|++|.++.+|. .++.+++|+.|+|++|++.+..|.. .+
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~-~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLH-D-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCC-C-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccCCCCcEEECCCCCCC-C-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence 34556666777777777665 2 3 356666677777777776665554 3566666777777766665433322 24
Q ss_pred cccccccccc
Q 039899 78 NIEQVQVNGC 87 (341)
Q Consensus 78 sL~~L~~~~c 87 (341)
+|+.|++.++
T Consensus 134 ~L~~L~L~~n 143 (272)
T 3rfs_A 134 NLTYLNLAHN 143 (272)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 5566666554
No 9
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.01 E-value=3e-10 Score=106.23 Aligned_cols=112 Identities=10% Similarity=0.064 Sum_probs=62.6
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccCC-----CCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCC-----
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGNI-----CSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLP----- 73 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L-----~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP----- 73 (341)
..+++|+.|+|++|.+. + +|..++.+ ++|++|+|++|.+..+| ..++.+++|+.|+|++|++.+.++
T Consensus 118 ~~l~~L~~L~Ls~N~l~-~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWA-T-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCS-S-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCc-c-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 45556666666666664 3 25555544 56666666666666444 456666666666666666544311
Q ss_pred --CCCccccccccccccccCcchhhhHHHH---hhchhccCCCCccccccC
Q 039899 74 --QLPSNIEQVQVNGCASLGTLSHALKLCK---SIDVEVSKPIPHLSIVVP 119 (341)
Q Consensus 74 --~lp~sL~~L~~~~c~sL~~l~~~p~~l~---~~l~~l~l~~n~~~~~lP 119 (341)
.-.++|+.|+++++ .++.+..++..+. ..++.+++++|.+.+..|
T Consensus 196 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 22345556666554 3443334444432 347777888888776553
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.01 E-value=1.1e-09 Score=99.09 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=31.5
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccc
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRL 69 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l 69 (341)
+|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.
T Consensus 36 ~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 36 DTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp TCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence 4555555555554 3334445555555555555555554332 3455555555555555554
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.99 E-value=4.7e-10 Score=115.30 Aligned_cols=115 Identities=14% Similarity=0.218 Sum_probs=88.4
Q ss_pred CCccccCCCCCcEEEccCCCCCC------------------CChhcc--CCCCccEEEcCCccccccCCCC---Cccccc
Q 039899 25 IPSDIGNICSLKELYLSKNRFFS------------------LPASIN--LLSKLWIIELEECQRLQSLPQL---PSNIEQ 81 (341)
Q Consensus 25 iP~~i~~L~~L~~L~Ls~N~~~~------------------LP~si~--~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~ 81 (341)
||..++.+++|+.|+|++|.|+. +|..++ ++++|++|+|++|++.+.+|.. .++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 89999999999999999999997 999999 9999999999999999998864 357788
Q ss_pred cccccccccCcchhhhHHHH--------hhchhccCCCCccccccCC--C--CccccchhccCCCeEEEEcC
Q 039899 82 VQVNGCASLGTLSHALKLCK--------SIDVEVSKPIPHLSIVVPG--S--EISKCFRYQKEDSAMAVTMP 141 (341)
Q Consensus 82 L~~~~c~sL~~l~~~p~~l~--------~~l~~l~l~~n~~~~~lPg--~--~iP~wf~~~~~g~si~~~Lp 141 (341)
|+++++..++. ..+|..+. ..++.+++++|.++ .+|. . .++..-.....++.+++.+|
T Consensus 278 L~Ls~n~~l~~-~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 278 INVACNRGISG-EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp EECTTCTTSCH-HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred EECcCCCCCcc-ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 88877753432 02455543 45888999999998 5665 1 34443334456677777777
No 12
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.99 E-value=6.6e-10 Score=92.25 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=85.8
Q ss_pred CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Ccccccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQV 82 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L 82 (341)
..++|+.|++++|.+.+|.+|..++.+++|+.|+|++|.++.+ ..++.+++|+.|++++|++.+.+|.. .++|+.|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999997457999999999999999999999988 78999999999999999998767654 4578888
Q ss_pred ccccccccCcchhhhHHHH--hhchhccCCCCcccc
Q 039899 83 QVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSI 116 (341)
Q Consensus 83 ~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~ 116 (341)
+++++. ++.++. +..+. ..++.+++++|.+++
T Consensus 94 ~ls~N~-i~~~~~-~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 94 NLSGNK-IKDLST-IEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ECTTSC-CCSHHH-HGGGGGCTTCCEEECTTCGGGG
T ss_pred ECCCCc-CCChHH-HHHHhhCCCCCEEeCcCCcccc
Confidence 887763 444321 12232 247888999998875
No 13
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.97 E-value=2.5e-09 Score=95.76 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=82.6
Q ss_pred CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Ccccccc
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSNIEQV 82 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L 82 (341)
.++|+.|+|++|++. +..|..++.+++|+.|+|++|.|..+|. .+..+++|+.|+|++|++.+..+.. .++|+.|
T Consensus 39 ~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 378999999999998 6668889999999999999999998886 4689999999999999886544432 3577888
Q ss_pred ccccccccCcchhhhHHHH--hhchhccCCCCcccccc
Q 039899 83 QVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVV 118 (341)
Q Consensus 83 ~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~l 118 (341)
+++++ .++.+ |..+. ..++.+++++|.+....
T Consensus 118 ~Ls~N-~l~~l---p~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 118 FMCCN-KLTEL---PRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp ECCSS-CCCSC---CTTGGGCTTCSEEECCSSCCCCCC
T ss_pred eccCC-ccccc---CcccccCCCCCEEECCCCcCCccC
Confidence 88665 34444 33332 24788899999987533
No 14
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.96 E-value=6e-10 Score=97.70 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=42.7
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ 83 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~ 83 (341)
++|+.|+|++|++. +..+..++.+++|+.|+|++|.++.+|.. +..+++|++|+|++|++.+..+.. .++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 45666666666665 32233356666666666666666655543 456666666666666654322221 23455555
Q ss_pred ccc
Q 039899 84 VNG 86 (341)
Q Consensus 84 ~~~ 86 (341)
+++
T Consensus 107 L~~ 109 (208)
T 2o6s_A 107 LNT 109 (208)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 15
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.94 E-value=5.6e-10 Score=116.75 Aligned_cols=64 Identities=28% Similarity=0.318 Sum_probs=33.5
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCcccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRL 69 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l 69 (341)
+..++.|+.|+|++|.+.. +|..++.+++|+.|+|++|.|+.||.+|+.|++|+.|+|++|++.
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS
T ss_pred hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC
Confidence 4445555555555555532 555555555555555555555555555555555555555555543
No 16
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.94 E-value=4.6e-10 Score=117.37 Aligned_cols=115 Identities=23% Similarity=0.229 Sum_probs=85.9
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC---ccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP---SNI 79 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---~sL 79 (341)
.+.+|++|+.|+|++|.|. .+|..|+.|++|+.|+|++|.|+.||.+|+.|++|+.|+|++|.+ +.||.-. ++|
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L 318 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNL 318 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTC
T ss_pred hhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCc
Confidence 4567899999999999997 499999999999999999999999999999999999999999987 4676532 456
Q ss_pred cccccccccccCcchhhhHHHHhhchhccCCCCccccccCC
Q 039899 80 EQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPG 120 (341)
Q Consensus 80 ~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg 120 (341)
+.|+++++.--..++.....+......+++++|.+++.+|.
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 66666655322222222222222233466788888886665
No 17
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.92 E-value=1.2e-09 Score=95.37 Aligned_cols=83 Identities=10% Similarity=0.138 Sum_probs=40.4
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCC---CCcc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQ---LPSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~---lp~s 78 (341)
.+..+++|+.|++++|.+. .++.++.+++|+.|+|++|.++ ..|..++.+++|+.|++++|++.+..|. -.++
T Consensus 61 ~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 137 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137 (197)
T ss_dssp TGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSS
T ss_pred HHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCC
Confidence 3444555555555555443 2334555555555555555555 2444555555555555555555432221 1234
Q ss_pred cccccccccc
Q 039899 79 IEQVQVNGCA 88 (341)
Q Consensus 79 L~~L~~~~c~ 88 (341)
|+.|++++|.
T Consensus 138 L~~L~L~~n~ 147 (197)
T 4ezg_A 138 VNSIDLSYNG 147 (197)
T ss_dssp CCEEECCSCT
T ss_pred CCEEEccCCC
Confidence 4555555443
No 18
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.92 E-value=7e-10 Score=96.77 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=71.0
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCCC--Ccc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQL--PSN 78 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~s 78 (341)
|.+..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++ ..|..++.+++|+.|++++|+..+.+|.+ .++
T Consensus 82 ~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~ 160 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160 (197)
T ss_dssp GGGTTCTTCCEEEEECTTCB-GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSS
T ss_pred hhhhcCCCCCEEEeECCccC-cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCC
Confidence 45788999999999999998 667899999999999999999999 57889999999999999999866666532 235
Q ss_pred ccccccccc
Q 039899 79 IEQVQVNGC 87 (341)
Q Consensus 79 L~~L~~~~c 87 (341)
|+.|+++++
T Consensus 161 L~~L~l~~n 169 (197)
T 4ezg_A 161 LKSLNIQFD 169 (197)
T ss_dssp CCEEECTTB
T ss_pred CCEEECCCC
Confidence 566666554
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.92 E-value=4.8e-09 Score=97.39 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=77.9
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Cccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNI 79 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL 79 (341)
++.++++|+.|+|++|.+.. +|.. +.+++|+.|+|++|.++.+|..+..+++|+.|+|++|++.+..|.. .++|
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred HhhcCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence 35667778888888877752 5543 6777777777777777777777777777777777777765433332 2356
Q ss_pred cccccccccccCcch-hhhHHHHhhchhccCCCCccccccCCC--CccccchhccCCCeEEEEcCCCCC
Q 039899 80 EQVQVNGCASLGTLS-HALKLCKSIDVEVSKPIPHLSIVVPGS--EISKCFRYQKEDSAMAVTMPLFLR 145 (341)
Q Consensus 80 ~~L~~~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~~~lPg~--~iP~wf~~~~~g~si~~~Lp~~~~ 145 (341)
+.|+++++ .++.++ ..+.. ...++.+++++|.+....++. .++..-.....+|.++ .+|....
T Consensus 127 ~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~ 192 (290)
T 1p9a_G 127 QELYLKGN-ELKTLPPGLLTP-TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192 (290)
T ss_dssp CEEECTTS-CCCCCCTTTTTT-CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred CEEECCCC-CCCccChhhccc-ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence 66666554 233222 11111 123666677777776433321 2333333333445444 4554443
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.91 E-value=4.5e-09 Score=93.53 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=69.9
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCC-C---Ccccccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQ-L---PSNIEQV 82 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~-l---p~sL~~L 82 (341)
++|+.|+|++|++. +..|..+..+++|+.|+|++|.++.+ |..+.++++|+.|+|++|++. .+|. . .++|+.|
T Consensus 32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEE
Confidence 46888888888886 33334678888888888888888855 667888888888888888775 3442 2 2456666
Q ss_pred ccccccccCcchhhhHHHH--hhchhccCCCCccccccC
Q 039899 83 QVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVP 119 (341)
Q Consensus 83 ~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lP 119 (341)
+++++ .++.+. +..+. ..++.+++++|.+.+..|
T Consensus 110 ~L~~N-~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 110 LLNAN-KINCLR--VDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp ECCSS-CCCCCC--TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ECCCC-CCCEeC--HHHcCCCCCCCEEECCCCcCCEECH
Confidence 66554 223221 11121 236777888888875444
No 21
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.91 E-value=4.1e-09 Score=93.79 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=57.8
Q ss_pred CCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899 9 SLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ 83 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~ 83 (341)
.++.|+|++|++. +..| ..++.+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|++.+..|.. .++|+.|+
T Consensus 33 ~~~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCC-EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCC-ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 4566677777665 3223 235666667777777776665544 5666666777777766665433321 23455555
Q ss_pred cccccccCcch-hhhHHHHhhchhccCCCCccccccCC
Q 039899 84 VNGCASLGTLS-HALKLCKSIDVEVSKPIPHLSIVVPG 120 (341)
Q Consensus 84 ~~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~~~lPg 120 (341)
++++. ++.+. ..+..+ ..++.+++++|.+++..|+
T Consensus 112 Ls~N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 112 LRSNR-ITCVGNDSFIGL-SSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CTTSC-CCCBCTTSSTTC-TTCSEEECTTSCCCCBCTT
T ss_pred CCCCc-CCeECHhHcCCC-ccCCEEECCCCcCCEECHH
Confidence 54432 22221 111111 2256666777777654443
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.91 E-value=4.4e-09 Score=96.30 Aligned_cols=115 Identities=21% Similarity=0.206 Sum_probs=82.0
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Cc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PS 77 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~ 77 (341)
|++..+++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+|.. ++.+++|+.|++++|++.+..|.. .+
T Consensus 79 ~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 157 (272)
T 3rfs_A 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157 (272)
T ss_dssp GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc
Confidence 45778889999999999997 54455578899999999999999977754 788999999999999876544432 45
Q ss_pred cccccccccccccCcchh-hhHHHHhhchhccCCCCccccccC
Q 039899 78 NIEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVP 119 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lP 119 (341)
+|+.|+++++ .++.+.. .+.. ...++.+++++|.+.+..|
T Consensus 158 ~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 158 NLTELDLSYN-QLQSLPEGVFDK-LTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCCSCCCT
T ss_pred cCCEEECCCC-CcCccCHHHhcC-CccCCEEECCCCcCCccCH
Confidence 7788888776 3333321 1111 1347778888888876544
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.90 E-value=5.5e-09 Score=95.89 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=28.9
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCcc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQ 67 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~ 67 (341)
++|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+ |..+..+++|+.|++++|+
T Consensus 32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34555555555554 22223345555555555555555533 3445555555555555554
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.90 E-value=3.3e-09 Score=98.52 Aligned_cols=108 Identities=23% Similarity=0.172 Sum_probs=62.0
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC---cccccccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP---SNIEQVQV 84 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---~sL~~L~~ 84 (341)
+.|+.|+|++|.+. +..|..+..+++|+.|+|++|.++.+|.. +.+++|+.|+|++|++. .+|... ++|+.|++
T Consensus 31 ~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 45777777777775 44455677777777777777777766643 66777777777777663 455422 34555555
Q ss_pred ccccccCcch-hhhHHHHhhchhccCCCCccccccCC
Q 039899 85 NGCASLGTLS-HALKLCKSIDVEVSKPIPHLSIVVPG 120 (341)
Q Consensus 85 ~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~~~lPg 120 (341)
+++ .++.++ ..+..+ ..++.+++++|.+....|+
T Consensus 108 ~~N-~l~~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 108 SFN-RLTSLPLGALRGL-GELQELYLKGNELKTLPPG 142 (290)
T ss_dssp CSS-CCCCCCSSTTTTC-TTCCEEECTTSCCCCCCTT
T ss_pred CCC-cCcccCHHHHcCC-CCCCEEECCCCCCCccChh
Confidence 443 222222 111111 2366667777776654443
No 25
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.90 E-value=1.2e-09 Score=92.63 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=83.6
Q ss_pred CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Ccccccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQV 82 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L 82 (341)
..++|+.|+|++|++.+|.+|..++.+++|+.|+|++|.++.+ ..+..+++|+.|+|++|++.+.+|.. .++|+.|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3578999999999997457998889999999999999999988 78999999999999999987766653 4578888
Q ss_pred ccccccccCcchhhhHHHH--hhchhccCCCCcccc
Q 039899 83 QVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSI 116 (341)
Q Consensus 83 ~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~ 116 (341)
+++++ .++.++.+ ..+. ..++.+++++|.++.
T Consensus 101 ~Ls~N-~l~~~~~~-~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 101 NLSGN-KLKDISTL-EPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp ECBSS-SCCSSGGG-GGGSSCSCCCEEECCSSGGGT
T ss_pred eccCC-ccCcchhH-HHHhcCCCCCEEEeeCCcCcc
Confidence 88776 44544321 2222 237788888888874
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.90 E-value=2.7e-09 Score=98.87 Aligned_cols=66 Identities=32% Similarity=0.408 Sum_probs=32.9
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC--CChhccCCCCccEEEcCCccccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS--LPASINLLSKLWIIELEECQRLQ 70 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~--LP~si~~Ls~L~~L~Ls~c~~l~ 70 (341)
+.++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+.. +|..+..+++|+.|++++|++.+
T Consensus 122 ~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp TTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC
Confidence 344445555555555554 3344444555555555555555542 44455555555555555555443
No 27
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.87 E-value=1.8e-09 Score=94.03 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=73.9
Q ss_pred CCcEEeccCCCCCCCCCCcc--ccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Ccccccc
Q 039899 9 SLTKLDISDCNLGEGAIPSD--IGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PSNIEQV 82 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~--i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L 82 (341)
+|+.|+|++|++. + +|.. ++.+++|+.|+|++|.|+.+ |..++.+++|+.|+|++|++.+..|.. .++|+.|
T Consensus 30 ~l~~L~l~~n~i~-~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELG-R-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCC-S-BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCCcCC-c-cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 7889999999886 3 5543 88899999999999999865 678888999999999999887655542 3566666
Q ss_pred ccccccccCcchhhhHHHH--hhchhccCCCCccccccC
Q 039899 83 QVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVP 119 (341)
Q Consensus 83 ~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lP 119 (341)
++++.. +..+. |..+. ..++.+++++|.+.+..+
T Consensus 108 ~L~~N~-l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 108 NLYDNQ-ISCVM--PGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ECCSSC-CCEEC--TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCc-CCeeC--HHHhhcCCCCCEEEeCCCCccCcCc
Confidence 665542 22221 22221 236777888888875433
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.87 E-value=3.7e-09 Score=103.71 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=64.5
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCC-C---Cc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQ-L---PS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~-l---p~ 77 (341)
++.++++|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.. +|. . .+
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~ 171 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVP 171 (452)
T ss_dssp TTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCT
T ss_pred HcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCC
Confidence 4677888888888888886 5455678888888888888888887775 47778888888888887753 332 1 34
Q ss_pred cccccccccccccCcch
Q 039899 78 NIEQVQVNGCASLGTLS 94 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~ 94 (341)
+|+.|++.+|..++.++
T Consensus 172 ~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYIS 188 (452)
T ss_dssp TCCEEECCCCTTCCEEC
T ss_pred cccEEeCCCCCCccccC
Confidence 66777776665555443
No 29
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.87 E-value=5.2e-09 Score=97.54 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=83.8
Q ss_pred CCCCCCcEEeccCCCCCCCCCC----ccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCcccccc--CC----
Q 039899 5 LGLCSLTKLDISDCNLGEGAIP----SDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQS--LP---- 73 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP----~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~--lP---- 73 (341)
..+++|+.|+|++|.+. +..| ..+..+++|+.|+|++|.+..+| ..++.+++|+.|+|++|++.+. ++
T Consensus 114 ~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWA-TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCCBCCSSCEEESCCCS-STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred ccCCCCCEEEeeccccc-chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 67888888888888887 5555 34567889999999999998655 5788999999999999987542 11
Q ss_pred -CCCccccccccccccccCcchhhhHHHH---hhchhccCCCCccccccCC
Q 039899 74 -QLPSNIEQVQVNGCASLGTLSHALKLCK---SIDVEVSKPIPHLSIVVPG 120 (341)
Q Consensus 74 -~lp~sL~~L~~~~c~sL~~l~~~p~~l~---~~l~~l~l~~n~~~~~lPg 120 (341)
.-.++|+.|+++++ .++.++..+..+. ..++.+++++|.+.+..|.
T Consensus 193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 193 PHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp TTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred hhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 12347888888776 4565555544442 3488899999999887664
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=3.7e-09 Score=112.65 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=36.5
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCC-ccEEEcCCccccccCC
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSK-LWIIELEECQRLQSLP 73 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~-L~~L~Ls~c~~l~~lP 73 (341)
+.++++|+.|+|++|++. .+| .++.+++|+.|+|++|.+..+|..+..+++ |+.|+|++|++. .+|
T Consensus 569 l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp HTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred hhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCc
Confidence 455555555555555554 255 555555555555555555555555555555 555555555543 444
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.85 E-value=4.1e-09 Score=104.78 Aligned_cols=107 Identities=9% Similarity=0.111 Sum_probs=85.3
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC---CChhccCCCCccEEEcCCccccccCCC----CCc
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS---LPASINLLSKLWIIELEECQRLQSLPQ----LPS 77 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~---LP~si~~Ls~L~~L~Ls~c~~l~~lP~----lp~ 77 (341)
..+++|+.|+|++|.+. +.+|..++.+++|+.|+|++|.++. +|..++.+++|+.|++++|++.+.+|. ..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 67899999999999998 7889999999999999999999994 556799999999999999999875663 246
Q ss_pred cccccccccccccCcchhhhHHHHhhchhccCCCCccc
Q 039899 78 NIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLS 115 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~ 115 (341)
+|+.|+++++.--. .+|..+...++.+++++|.++
T Consensus 400 ~L~~L~Ls~N~l~~---~~~~~l~~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 400 SLLSLNMSSNILTD---TIFRCLPPRIKVLDLHSNKIK 434 (520)
T ss_dssp TCCEEECCSSCCCG---GGGGSCCTTCCEEECCSSCCC
T ss_pred cCCEEECcCCCCCc---chhhhhcccCCEEECCCCccc
Confidence 78888887764222 223333355788888888886
No 32
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=3.6e-09 Score=107.58 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=79.0
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Ccccccccccc
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIEQVQVNG 86 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~~L~~~~ 86 (341)
.|+.|+|++|.+.. +|. ++.+++|+.|+|++|.|+.+|..|++|++|+.|+|++|++.+ +|.+ .++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCC
Confidence 48889999999863 886 899999999999999999999999999999999999998864 6643 35677777766
Q ss_pred ccccCcchhhhHHHHh--hchhccCCCCccccccC
Q 039899 87 CASLGTLSHALKLCKS--IDVEVSKPIPHLSIVVP 119 (341)
Q Consensus 87 c~sL~~l~~~p~~l~~--~l~~l~l~~n~~~~~lP 119 (341)
+ .++.+. .|..+.. .|+.+++++|.+++..|
T Consensus 518 N-~l~~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 N-RLQQSA-AIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp S-CCCSSS-TTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred C-CCCCCC-CcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 4 333331 0333432 47889999999987554
No 33
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.85 E-value=1.1e-08 Score=92.34 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=82.2
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s 78 (341)
++.++++|++|+|++|.+. +..|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.+..+.. .++
T Consensus 54 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence 4778899999999999997 6556668999999999999999997774 5788999999999999886443332 456
Q ss_pred ccccccccccccCcchh-hhHHHHhhchhccCCCCccccccC
Q 039899 79 IEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVP 119 (341)
Q Consensus 79 L~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lP 119 (341)
|+.|+++++ .++.++. .+..+ ..++.+++++|.+.+..|
T Consensus 133 L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 133 LKELRLNTN-QLQSIPAGAFDKL-TNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCT
T ss_pred ccEEECcCC-cCCccCHHHcCcC-cCCCEEECCCCcCCccCH
Confidence 777777665 3443321 11111 237778888888875433
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=1.7e-09 Score=115.18 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=20.0
Q ss_pred CCcccc--CCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCcc
Q 039899 25 IPSDIG--NICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQ 67 (341)
Q Consensus 25 iP~~i~--~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~ 67 (341)
+|..++ .+++|+.|+|++|.+. .+|..+++|++|+.|+|++|+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 444444 4444444444444433 444444444444444444444
No 35
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.84 E-value=1.2e-08 Score=93.21 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=35.6
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCcccc
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRL 69 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l 69 (341)
+|+.|+|++|++. +..|..++.+++|++|+|++|.++.+|.. +..+++|+.|+|++|++.
T Consensus 38 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 38 DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98 (270)
T ss_dssp TCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC
T ss_pred CCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC
Confidence 4666666666665 22233566666666666666666666554 355666666666666654
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.83 E-value=6.5e-09 Score=95.40 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=80.1
Q ss_pred CCCCCCCCcEEeccCCC-CCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Cc
Q 039899 3 SLLGLCSLTKLDISDCN-LGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~-l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~ 77 (341)
++.++++|+.|+|++|. +. +..|..++.+++|+.|+|++|.++.+ |..+..+++|+.|++++|++.+..+.. .+
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 153 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC
Confidence 57788899999999997 64 33377788899999999999999866 567888999999999999886543332 35
Q ss_pred cccccccccccccCcchh-hhHHHHhhchhccCCCCccccccCC
Q 039899 78 NIEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVPG 120 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lPg 120 (341)
+|+.|+++++ .++.++. .+.. ...++.+++++|.+.+..|.
T Consensus 154 ~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 154 NLTHLFLHGN-RISSVPERAFRG-LHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp TCCEEECCSS-CCCEECTTTTTT-CTTCCEEECCSSCCCEECTT
T ss_pred CccEEECCCC-cccccCHHHhcC-ccccCEEECCCCcccccCHh
Confidence 6777777665 2333221 1111 12366777888877765443
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.83 E-value=4.6e-09 Score=104.42 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=69.2
Q ss_pred CCCCCCCCcEEeccCCCCCCC--CCCccccCCCCCcEEEccCCCCCC-CChh-ccCCCCccEEEcCCccccccCCC-CCc
Q 039899 3 SLLGLCSLTKLDISDCNLGEG--AIPSDIGNICSLKELYLSKNRFFS-LPAS-INLLSKLWIIELEECQRLQSLPQ-LPS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg--~iP~~i~~L~~L~~L~Ls~N~~~~-LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~-lp~ 77 (341)
.+..+++|+.|+|++|++. + .+|..++.+++|+.|+|++|.+.. +|.. +..+++|+.|++++|++.+.+|. +|+
T Consensus 343 ~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 421 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421 (520)
T ss_dssp TCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCT
T ss_pred hhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcc
Confidence 4566777777777777775 3 345567777777777777777775 7754 66677777777777777665554 446
Q ss_pred cccccccccccccCcchhhhHHHH--hhchhccCCCCccc
Q 039899 78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLS 115 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~ 115 (341)
+|+.|+++++ .++.+ |..+. ..++.+++++|.+.
T Consensus 422 ~L~~L~Ls~N-~l~~i---p~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 422 RIKVLDLHSN-KIKSI---PKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp TCCEEECCSS-CCCCC---CGGGGGCTTCCEEECCSSCCC
T ss_pred cCCEEECCCC-ccccc---chhhhcCCCCCEEECCCCcCC
Confidence 7777777665 33433 33222 23666677777766
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.82 E-value=9.8e-09 Score=100.35 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=62.8
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s 78 (341)
++.++++|+.|+|++|.+. +..|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++....+.. .++
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp TTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 4677888888888888886 4344667888888888888888887775 5788888888888888765322211 346
Q ss_pred ccccccccccccCc
Q 039899 79 IEQVQVNGCASLGT 92 (341)
Q Consensus 79 L~~L~~~~c~sL~~ 92 (341)
|+.|++.++..+..
T Consensus 162 L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 162 LRRLDLGELKRLSY 175 (440)
T ss_dssp CCEEECCCCTTCCE
T ss_pred cCEeCCCCCCCcce
Confidence 66676666544443
No 39
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.81 E-value=1.3e-08 Score=89.13 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=83.0
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSN 78 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~s 78 (341)
+.++++|++|+|++|++. + +|. .++.+++|++|+|++|.++.+|.. ++.+++|+.|+|++|++.+..+.. .++
T Consensus 48 ~~~l~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQ-S-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125 (208)
T ss_dssp TTTCTTCSEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCCccC-c-cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc
Confidence 678999999999999997 4 554 578999999999999999988864 689999999999999986544432 357
Q ss_pred ccccccccccccCcchh-hhHHHHhhchhccCCCCccccccC
Q 039899 79 IEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVP 119 (341)
Q Consensus 79 L~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lP 119 (341)
|+.|++.++ .++.+.. .+.. ...++.+++++|.+.+..|
T Consensus 126 L~~L~l~~N-~l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 126 LKDLRLYQN-QLKSVPDGVFDR-LTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCEEECCSS-CCSCCCTTTTTT-CTTCCEEECCSCCBCCCTT
T ss_pred CCEEECCCC-ccceeCHHHhcc-CCCccEEEecCCCeecCCC
Confidence 777777665 3333321 1111 1247788889888876444
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.80 E-value=3.9e-09 Score=99.99 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=61.5
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCC--C---Cc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQ--L---PS 77 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~--l---p~ 77 (341)
+.++++|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+|.. ++++++|+.|++++|++. .+|. . .+
T Consensus 72 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~ 149 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLT 149 (353)
T ss_dssp TTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCT
T ss_pred hccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCC
Confidence 556666666666666665 33345566666677777776666666654 666666777777666654 3433 1 23
Q ss_pred cccccccccccccCcchhhhHHHH--hhchhccCCCCccccccC
Q 039899 78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVP 119 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lP 119 (341)
+|+.|+++++..+..+. +..+. ..++.+++++|.+.+..|
T Consensus 150 ~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp TCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcEEECCCCccccccC--HHHccCCCCCCEEECCCCCcCccCH
Confidence 55555555543333321 11111 124555566665554333
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.79 E-value=1.1e-08 Score=103.55 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=54.5
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s 78 (341)
++.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+ |..|+++++|++|++++|++.+..|.. ..+
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred hccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 4667777777777777776 44456677777777777777777755 667777777777777777764322221 235
Q ss_pred ccccccccc
Q 039899 79 IEQVQVNGC 87 (341)
Q Consensus 79 L~~L~~~~c 87 (341)
|+.|+++++
T Consensus 130 L~~L~L~~n 138 (606)
T 3vq2_A 130 LKKLNVAHN 138 (606)
T ss_dssp CCEEECCSS
T ss_pred CCEEeCCCC
Confidence 555555544
No 42
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.79 E-value=9.3e-09 Score=86.97 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=79.4
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC-CChhccCCCCccEEEcCCccccccCC---C--CCc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS-LPASINLLSKLWIIELEECQRLQSLP---Q--LPS 77 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~-LP~si~~Ls~L~~L~Ls~c~~l~~lP---~--lp~ 77 (341)
+..+++|+.|+|++|.+. + + ..++.+++|+.|+|++|.++. +|..+..+++|+.|+|++|++.+ +| . -.+
T Consensus 45 ~~~l~~L~~L~l~~n~l~-~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~ 120 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLI-S-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLE 120 (168)
T ss_dssp CGGGGGCCEEEEESSCCC-C-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCS
T ss_pred HHhCCCCCEEeCcCCCCC-C-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCC
Confidence 477899999999999997 3 5 789999999999999999996 88888889999999999998754 33 1 134
Q ss_pred cccccccccccccCcchhhhH-HHH--hhchhccCCCCccc
Q 039899 78 NIEQVQVNGCASLGTLSHALK-LCK--SIDVEVSKPIPHLS 115 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~~p~-~l~--~~l~~l~l~~n~~~ 115 (341)
+|+.|+++++ .+..++.... .+. ..++.++++.|.+.
T Consensus 121 ~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 121 CLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6777777765 3333332111 221 23777788777765
No 43
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.79 E-value=1.5e-08 Score=86.44 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Ccccccc
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSNIEQV 82 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L 82 (341)
.++|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+|.. +..+++|+.|+|++|++.+..+.. .++|+.|
T Consensus 27 ~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 468999999999997 43444578899999999999999988764 688999999999999887544432 3567777
Q ss_pred ccccccccCcchhhhHHH---HhhchhccCCCCccccccC
Q 039899 83 QVNGCASLGTLSHALKLC---KSIDVEVSKPIPHLSIVVP 119 (341)
Q Consensus 83 ~~~~c~sL~~l~~~p~~l---~~~l~~l~l~~n~~~~~lP 119 (341)
+++++ .++.++ ... ...++.+++++|.+.+..|
T Consensus 106 ~l~~N-~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 106 ALDTN-QLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSS-CCSCCC---TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECcCC-cceEeC---HHHhcCCcccCEEEecCCCeeccCc
Confidence 77665 344332 222 1236777888888875444
No 44
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.79 E-value=9.3e-09 Score=95.38 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=69.1
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNI 79 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL 79 (341)
|.+..+++|+.|+|++|++.. +|. ++.+++|+.|+|++|.++.+|. +..+++|+.|++++|++.+ ++.+ .++|
T Consensus 62 ~~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L 136 (291)
T 1h6t_A 62 QGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISD-INGLVHLPQL 136 (291)
T ss_dssp TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCC-CGGGGGCTTC
T ss_pred hhHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCC-ChhhcCCCCC
Confidence 445667777788888887762 554 7777788888888887777664 7777788888888777643 3432 2456
Q ss_pred cccccccccccCcchhhhHHHHhhchhccCCCCccccccC
Q 039899 80 EQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVP 119 (341)
Q Consensus 80 ~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lP 119 (341)
+.|+++++ .++.+.. ... ...++.+++++|.+....|
T Consensus 137 ~~L~l~~n-~l~~~~~-l~~-l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 137 ESLYLGNN-KITDITV-LSR-LTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CEEECCSS-CCCCCGG-GGG-CTTCSEEECCSSCCCCCGG
T ss_pred CEEEccCC-cCCcchh-hcc-CCCCCEEEccCCccccchh
Confidence 66666554 2333311 111 1236677777777765433
No 45
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=5.2e-09 Score=95.77 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=81.3
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC-ccccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP-SNIEQ 81 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp-~sL~~ 81 (341)
++..+++|+.|++++|.+.+ +| .++.+++|+.|+|++|.++.+|. +..+++|+.|+|++|++.+ +|.++ .+|+.
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-LNGIPSACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-CTTCCCSSCCE
T ss_pred chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC-cCccccCcccE
Confidence 35567889999999999964 77 78999999999999999999887 9999999999999998854 55433 68888
Q ss_pred cccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899 82 VQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI 116 (341)
Q Consensus 82 L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~ 116 (341)
|+++++ .++.++.+ .. ...++.+++++|.+++
T Consensus 111 L~L~~N-~l~~~~~l-~~-l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 111 LFLDNN-ELRDTDSL-IH-LKNLEILSIRNNKLKS 142 (263)
T ss_dssp EECCSS-CCSBSGGG-TT-CTTCCEEECTTSCCCB
T ss_pred EEccCC-ccCCChhh-cC-cccccEEECCCCcCCC
Confidence 888776 44444311 11 1247778888888875
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.78 E-value=1.9e-09 Score=99.99 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=87.1
Q ss_pred CCCCCCCCcEEeccCCCCCCC-CCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Cc
Q 039899 3 SLLGLCSLTKLDISDCNLGEG-AIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg-~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~ 77 (341)
.+.++++|+.|+|++|.+. + .+|..++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|++.+..+.. .+
T Consensus 145 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTCTTCCEEECTTCEEG-GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hcccCcCCCEEECCCCccc-cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 3678899999999999997 4 5788999999999999999999966 678999999999999999986432211 25
Q ss_pred cccccccccccccCcchhhhHHHHhhchhccCCCCccccccCCCCccccch
Q 039899 78 NIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSEISKCFR 128 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg~~iP~wf~ 128 (341)
+|+.|+++++.--.........+...++.+++++|.+.+.-+-..++.|+.
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence 677777766532221111111111346777888888764333234556654
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.78 E-value=7.1e-09 Score=104.45 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=66.6
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC----Cc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL----PS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l----p~ 77 (341)
+|.++++|++|+|++|+|. +..|..|++|++|++|+|++|.++.+|. .+.+|++|+.|+|++|++.+ +|.. .+
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~ 148 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLK 148 (635)
T ss_dssp TTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCT
T ss_pred HHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCc
Confidence 4667777777777777775 3223456777777777777777776664 46777777777777776643 3321 23
Q ss_pred cccccccccccccCcchhhhHHHH--hhchhccCCCCccccccCC
Q 039899 78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVPG 120 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lPg 120 (341)
+|+.|+++++. ++.+ .+|..+. ..++.+++++|.+.+..|+
T Consensus 149 ~L~~L~Ls~N~-l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 149 TLKELNVAHNL-IQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp TCCEEECCSSC-CCCC-CCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred ccCeeccccCc-cccC-CCchhhccchhhhhhcccCccccccccc
Confidence 55556554431 2111 1122222 2366777777777655443
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.78 E-value=2.7e-08 Score=90.80 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=79.0
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCCC---CCcc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLPQ---LPSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP~---lp~s 78 (341)
++.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+| ..+.++++|+.|++++|++.+..+. -.++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 5778899999999999986 434457888999999999999998665 5788899999999999887643331 1246
Q ss_pred ccccccccccccCcchhhhHHHH--hhchhccCCCCcccccc
Q 039899 79 IEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVV 118 (341)
Q Consensus 79 L~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~l 118 (341)
|+.|+++++. ++.+ .+|..+. ..++.+++++|.+.+..
T Consensus 126 L~~L~l~~n~-l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 126 LKELNVAHNL-IQSF-KLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCEEECCSSC-CCCC-CCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCEEECcCCc-ccee-cCchhhccCCCCCEEECCCCCCCcCC
Confidence 7777776542 2221 1222332 23777788888776543
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.78 E-value=8.5e-09 Score=103.87 Aligned_cols=133 Identities=10% Similarity=0.063 Sum_probs=95.9
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC---hhccCCCCccEEEcCCccccccCCC----CCc
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP---ASINLLSKLWIIELEECQRLQSLPQ----LPS 77 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP---~si~~Ls~L~~L~Ls~c~~l~~lP~----lp~ 77 (341)
..+++|+.|+|++|.+. +.+|..++.+++|+.|+|++|.++.+| ..++.+++|+.|++++|++.+.+|. ..+
T Consensus 350 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCC-TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccc-cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 67889999999999998 788999999999999999999999665 5689999999999999999876664 246
Q ss_pred cccccccccccccCcchhhhHHHHhhchhccCCCCccccccCCC--CccccchhccCCCeEEEEcCCC
Q 039899 78 NIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGS--EISKCFRYQKEDSAMAVTMPLF 143 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg~--~iP~wf~~~~~g~si~~~Lp~~ 143 (341)
+|+.|+++++. +. ..+|..+...++.+++++|.++. +|.. ..|..-.....+|.++ .+|+.
T Consensus 429 ~L~~L~l~~n~-l~--~~~~~~l~~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 429 SILVLNLSSNM-LT--GSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDG 491 (562)
T ss_dssp TCCEEECCSSC-CC--GGGGSSCCTTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred cCCEEECCCCC-CC--cchhhhhcCcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence 77888887764 22 12333333457888888888872 3322 2333323334555555 45554
No 50
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.77 E-value=9.6e-09 Score=91.39 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=89.5
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Cccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSNI 79 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL 79 (341)
+.++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.+..|.. .++|
T Consensus 53 ~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp GGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred hccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 678999999999999997 5445589999999999999999997776 5899999999999999998765643 2567
Q ss_pred cccccccccccCcchhhhHHHH--hhchhccCCCCccccccCCCCccccch
Q 039899 80 EQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVPGSEISKCFR 128 (341)
Q Consensus 80 ~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lPg~~iP~wf~ 128 (341)
+.|+++++ .++.+. |..+. ..++.+++++|.+..-.+-..+..|+.
T Consensus 132 ~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 132 RLLSLYDN-QITTVA--PGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp SEEECTTS-CCCCBC--TTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred CEEECCCC-cCCEEC--HHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 77777664 333331 22222 237788999999875333223444554
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.77 E-value=1.3e-08 Score=95.14 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=49.6
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNI 79 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL 79 (341)
|.+..+++|+.|+|++|.+.. +|. ++.+++|+.|+|++|.++.+| .+..+++|+.|++++|++.+ +|.+ .++|
T Consensus 57 ~~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L 131 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITD-VTPLAGLSNL 131 (308)
T ss_dssp TTGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCC-CGGGTTCTTC
T ss_pred hhhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCC-chhhcCCCCC
Confidence 445566677777777777652 554 666777777777777776665 46666777777777766543 3322 2455
Q ss_pred cccccccc
Q 039899 80 EQVQVNGC 87 (341)
Q Consensus 80 ~~L~~~~c 87 (341)
+.|+++++
T Consensus 132 ~~L~l~~n 139 (308)
T 1h6u_A 132 QVLYLDLN 139 (308)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 55555443
No 52
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.76 E-value=2.1e-08 Score=102.04 Aligned_cols=99 Identities=28% Similarity=0.353 Sum_probs=59.7
Q ss_pred CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCcccccccccc
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNG 86 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~~ 86 (341)
+++|+.|+|++|++. + +|. ++. +|+.|+|++|.|+.+|. .+++|+.|+|++|++.+ +|..+++|+.|++++
T Consensus 99 l~~L~~L~Ls~N~l~-~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 99 PASLEYLDACDNRLS-T-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPELPTSLEVLSVRN 169 (571)
T ss_dssp CTTCCEEECCSSCCS-C-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred cCCCCEEEccCCCCC-C-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCCcCCCcCEEECCC
Confidence 455666666666664 2 555 443 66666666666666665 45667777777776643 666666677777765
Q ss_pred ccccCcchhhhHHHHhhchhccCCCCccccccCC
Q 039899 87 CASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPG 120 (341)
Q Consensus 87 c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg 120 (341)
+ .|+.++. +...++.+++++|.++ .+|.
T Consensus 170 N-~L~~lp~----l~~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 170 N-QLTFLPE----LPESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp S-CCSCCCC----CCTTCCEEECCSSCCS-SCCC
T ss_pred C-CCCCcch----hhCCCCEEECcCCCCC-chhh
Confidence 5 2343332 2255777888888876 3443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.76 E-value=2.3e-08 Score=97.98 Aligned_cols=84 Identities=25% Similarity=0.393 Sum_probs=68.3
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCC----CCc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQ----LPS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~----lp~ 77 (341)
++.++++|+.|+|++|++. +..+..++.+++|+.|+|++|.++.+|. .+..+++|+.|++++|..++.+|. -.+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 118 AFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 (452)
T ss_dssp TTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred hccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence 5788999999999999997 4334458999999999999999998775 788899999999999887777764 235
Q ss_pred cccccccccc
Q 039899 78 NIEQVQVNGC 87 (341)
Q Consensus 78 sL~~L~~~~c 87 (341)
+|+.|+++++
T Consensus 197 ~L~~L~L~~n 206 (452)
T 3zyi_A 197 NLKYLNLGMC 206 (452)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEECCCC
Confidence 6777777554
No 54
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=5.6e-09 Score=86.57 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=70.2
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC-CChhccCCCCccEEEcCCcccccc-CCC---CCc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS-LPASINLLSKLWIIELEECQRLQS-LPQ---LPS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~-LP~si~~Ls~L~~L~Ls~c~~l~~-lP~---lp~ 77 (341)
.+..+++|+.|+|++|.+. + + ..++.+++|+.|+|++|.++. +|..++.+++|+.|++++|++.+. .|. -.+
T Consensus 37 ~~~~l~~L~~L~l~~n~l~-~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~ 113 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLT-S-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE 113 (149)
T ss_dssp CCTTCTTCCEEECTTSCCC-C-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred HHhhcCCCcEEECcCCCCC-C-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC
Confidence 4578999999999999997 3 4 789999999999999999996 888888899999999999998642 111 134
Q ss_pred cccccccccccccCcch
Q 039899 78 NIEQVQVNGCASLGTLS 94 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~ 94 (341)
+|+.|+++++ .+..++
T Consensus 114 ~L~~L~l~~N-~l~~~~ 129 (149)
T 2je0_A 114 NLKSLDLFNC-EVTNLN 129 (149)
T ss_dssp TCCEEECTTC-GGGGST
T ss_pred CCCEEeCcCC-cccchH
Confidence 6778888776 344443
No 55
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.75 E-value=9.4e-09 Score=105.33 Aligned_cols=81 Identities=25% Similarity=0.283 Sum_probs=55.9
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNI 79 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL 79 (341)
|++..|++|+.|+|++|.+. + +|. ++.+++|+.|+|++|.+..+| .+..+++|+.|+|++|++.+ +|.+ .++|
T Consensus 59 ~~l~~l~~L~~L~Ls~N~l~-~-~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L 133 (605)
T 1m9s_A 59 QGIQYLPNVTKLFLNGNKLT-D-IKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQL 133 (605)
T ss_dssp TTGGGCTTCCEEECTTSCCC-C-CGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCC-CGGGGGCTTC
T ss_pred hHHccCCCCCEEEeeCCCCC-C-Chh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCC-CccccCCCcc
Confidence 55667778888888888876 3 554 777778888888888777766 57777777777777777643 4432 2456
Q ss_pred cccccccc
Q 039899 80 EQVQVNGC 87 (341)
Q Consensus 80 ~~L~~~~c 87 (341)
+.|+++++
T Consensus 134 ~~L~Ls~N 141 (605)
T 1m9s_A 134 ESLYLGNN 141 (605)
T ss_dssp SEEECCSS
T ss_pred CEEECCCC
Confidence 66666544
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.75 E-value=2.3e-08 Score=97.65 Aligned_cols=113 Identities=28% Similarity=0.406 Sum_probs=80.3
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC----C
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL----P 76 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l----p 76 (341)
++.++++|+.|+|++|++. + +|. .+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+.++.+|.- .
T Consensus 107 ~~~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLT-T-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184 (440)
T ss_dssp GGTTCSSCCEEECCSSCCS-S-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hccCCccCCEEECCCCcCC-e-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence 4778999999999999997 3 554 68999999999999999997775 7888999999999998877777641 3
Q ss_pred ccccccccccccccCcchhhhHHHHhhchhccCCCCccccccCC
Q 039899 77 SNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPG 120 (341)
Q Consensus 77 ~sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg 120 (341)
++|+.|+++++ .++.++.+. . ...++.+++++|.+....|+
T Consensus 185 ~~L~~L~L~~n-~l~~~~~~~-~-l~~L~~L~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 185 SNLRYLNLAMC-NLREIPNLT-P-LIKLDELDLSGNHLSAIRPG 225 (440)
T ss_dssp SSCCEEECTTS-CCSSCCCCT-T-CSSCCEEECTTSCCCEECTT
T ss_pred cccCeecCCCC-cCccccccC-C-CcccCEEECCCCccCccChh
Confidence 56777777665 333332100 0 11255556666665554443
No 57
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.74 E-value=3.3e-08 Score=85.91 Aligned_cols=107 Identities=24% Similarity=0.253 Sum_probs=79.5
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh--ccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS--INLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ 83 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s--i~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~ 83 (341)
.-+.|+++++++. .+|..+.. +|+.|+|++|.|..+|.. ++.+++|+.|+|++|++.+..|.. .++|+.|+
T Consensus 9 ~~~~l~~s~~~l~--~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 9 EGTTVDCTGRGLK--EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp ETTEEECTTSCCS--SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCEEEcCCCCcC--cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 3578999999995 49987764 899999999999988864 899999999999999998766653 35677777
Q ss_pred cccccccCcchh-hhHHHHhhchhccCCCCccccccCCC
Q 039899 84 VNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVPGS 121 (341)
Q Consensus 84 ~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lPg~ 121 (341)
+++. .++.+.. .+.. ...++.+++++|.+++..|+.
T Consensus 85 Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~ 121 (192)
T 1w8a_A 85 LGEN-KIKEISNKMFLG-LHQLKTLNLYDNQISCVMPGS 121 (192)
T ss_dssp CCSC-CCCEECSSSSTT-CTTCCEEECCSSCCCEECTTS
T ss_pred CCCC-cCCccCHHHhcC-CCCCCEEECCCCcCCeeCHHH
Confidence 7664 2333221 1111 134778889999998866653
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.74 E-value=9.9e-09 Score=102.44 Aligned_cols=104 Identities=20% Similarity=0.222 Sum_probs=52.4
Q ss_pred CCCCCCCcEEeccCCCCCCCCCC---ccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCC-CCCccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIP---SDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLP-QLPSNI 79 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP---~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP-~lp~sL 79 (341)
++.+++|+.|+|++|++.. +| ..++.+++|+.|+|++|.++.+|..++.+++|+.|++++|++. .+| .+|++|
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L 433 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTL 433 (549)
T ss_dssp TTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTC
T ss_pred hhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccchhcCCc
Confidence 3445555555555555542 33 2355556666666666666666655555666666666666543 233 234555
Q ss_pred cccccccccccCcchhhhHHHHhhchhccCCCCccc
Q 039899 80 EQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLS 115 (341)
Q Consensus 80 ~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~ 115 (341)
+.|+++++ .++.+. .. ...++.+++++|.++
T Consensus 434 ~~L~Ls~N-~l~~~~---~~-l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 434 EVLDVSNN-NLDSFS---LF-LPRLQELYISRNKLK 464 (549)
T ss_dssp SEEECCSS-CCSCCC---CC-CTTCCEEECCSSCCS
T ss_pred eEEECCCC-Chhhhc---cc-CChhcEEECCCCccC
Confidence 55555544 222211 00 112555556666554
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.74 E-value=3.7e-08 Score=89.87 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=80.7
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Cc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~ 77 (341)
++.++++|++|+|++|.+.+ +|.. +..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.+..|.. .+
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc
Confidence 47788999999999999963 6655 5789999999999999998875 5688999999999999886544432 45
Q ss_pred cccccccccccccCcchh-hhHHHHhhchhccCCCCccccccC
Q 039899 78 NIEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVP 119 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lP 119 (341)
+|+.|+++++ .++.++. .+.. ...++.+++++|.+....|
T Consensus 134 ~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 134 KLTYLSLGYN-ELQSLPKGVFDK-LTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCCSCCCT
T ss_pred CCCEEECCCC-cCCccCHhHccC-CcccceeEecCCcCcEeCh
Confidence 7777777665 2333321 1111 1236777788887775444
No 60
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=1.8e-08 Score=95.10 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=65.4
Q ss_pred CCCCCCCCCCcEEeccC-CCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCCCc-
Q 039899 1 LPSLLGLCSLTKLDISD-CNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQLPS- 77 (341)
Q Consensus 1 LPsl~~L~~L~~LdLs~-~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~lp~- 77 (341)
+|.+..+++|+.|+|++ |++. +..|..|+.|++|+.|+|++|.|+.+|+ .|.+|++|+.|+|++|++.+..|....
T Consensus 24 ip~l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCCCCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 46677888999999996 8886 4334679999999999999999996654 789999999999999998643333222
Q ss_pred -ccccccccc
Q 039899 78 -NIEQVQVNG 86 (341)
Q Consensus 78 -sL~~L~~~~ 86 (341)
.|+.|++.+
T Consensus 103 ~~L~~l~l~~ 112 (347)
T 2ifg_A 103 LSLQELVLSG 112 (347)
T ss_dssp CCCCEEECCS
T ss_pred CCceEEEeeC
Confidence 266666654
No 61
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.74 E-value=1.6e-08 Score=98.44 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=43.7
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ 83 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~ 83 (341)
++|+.|+|++|.+. +.+|..++.+++|+.|+|++|.+..+ |..++.+++|+.|+|++|++.+..|.. .++|+.|+
T Consensus 275 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 45666666666665 44555566666666666666666633 345666666666666666554333322 23455555
Q ss_pred cccc
Q 039899 84 VNGC 87 (341)
Q Consensus 84 ~~~c 87 (341)
++++
T Consensus 354 Ls~N 357 (455)
T 3v47_A 354 LSYN 357 (455)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5444
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.74 E-value=7.2e-09 Score=103.46 Aligned_cols=116 Identities=17% Similarity=0.145 Sum_probs=78.8
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccc-cCCCC---Cc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQ-SLPQL---PS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~-~lP~l---p~ 77 (341)
++.++++|++|+|++|++. +..|..++.+++|++|+|++|.++.+|.. ++++++|++|++++|++.+ .+|.. .+
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 4777888888888888887 55567788888888888888888877654 8888888888888888764 23322 34
Q ss_pred cccccccccccccCcch-hhhHHHHhhchhccCCCCccccccCC
Q 039899 78 NIEQVQVNGCASLGTLS-HALKLCKSIDVEVSKPIPHLSIVVPG 120 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~~~lPg 120 (341)
+|+.|+++++..+..++ ..+.. ...++.+++++|.+.+..|.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETTCCEECTT
T ss_pred CccEEECCCCccccccCHhhhhc-ccccCeeeccCCcccccChh
Confidence 66777776665343332 11111 12366677777777765554
No 63
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.74 E-value=1.4e-08 Score=95.44 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=44.0
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCC-CCCccccccccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLP-QLPSNIEQVQVN 85 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP-~lp~sL~~L~~~ 85 (341)
++|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+ |..++++++|+.|++++|++. .+| .++++|+.|+++
T Consensus 54 ~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECC
T ss_pred CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECC
Confidence 45666666666665 33344566666666666666666644 455666666666666666554 333 234455555554
Q ss_pred c
Q 039899 86 G 86 (341)
Q Consensus 86 ~ 86 (341)
+
T Consensus 132 ~ 132 (332)
T 2ft3_A 132 D 132 (332)
T ss_dssp S
T ss_pred C
Confidence 3
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.74 E-value=3e-08 Score=97.93 Aligned_cols=106 Identities=22% Similarity=0.235 Sum_probs=72.9
Q ss_pred CCCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCcccc
Q 039899 1 LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIE 80 (341)
Q Consensus 1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~ 80 (341)
+|+++++++|++|++++|++. + +|..+ .+|+.|+|++|.++.+| .++++++|+.|++++|++.+ +|..|++|+
T Consensus 146 lp~~~~l~~L~~L~l~~N~l~-~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~ 218 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNNSLK-K-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLE 218 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCS-C-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCC
T ss_pred CcccCCCCCCCEEECCCCcCc-c-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCcCccc
Confidence 356667777777777777775 2 66543 46777777777777777 58888899999999988754 788888899
Q ss_pred ccccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899 81 QVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI 116 (341)
Q Consensus 81 ~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~ 116 (341)
.|+++++ .++.++.+ .. ...++.+++++|.+.+
T Consensus 219 ~L~l~~n-~l~~lp~~-~~-l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 219 SIVAGNN-ILEELPEL-QN-LPFLTTIYADNNLLKT 251 (454)
T ss_dssp EEECCSS-CCSSCCCC-TT-CTTCCEEECCSSCCSS
T ss_pred EEECcCC-cCCccccc-CC-CCCCCEEECCCCcCCc
Confidence 8888776 44444321 01 1236667777777764
No 65
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.74 E-value=3.4e-08 Score=99.89 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=86.1
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccc-cCCCC---Cc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQ-SLPQL---PS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~-~lP~l---p~ 77 (341)
++.++++|++|+|++|.+. +..|..++.+++|++|+|++|.++.+| ..++++++|+.|++++|++.+ .+|.. .+
T Consensus 75 ~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 153 (606)
T 3vq2_A 75 AWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153 (606)
T ss_dssp TTTTCTTCCEEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred HhhchhhcCEeECCCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence 5789999999999999998 666899999999999999999999777 689999999999999999875 55653 34
Q ss_pred cccccccccccccCcc-hhhhHHHHhh---chhccCCCCccccccC
Q 039899 78 NIEQVQVNGCASLGTL-SHALKLCKSI---DVEVSKPIPHLSIVVP 119 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l-~~~p~~l~~~---l~~l~l~~n~~~~~lP 119 (341)
+|+.|+++++. ++.+ ...+..+.++ +..++++.|.+.+..+
T Consensus 154 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 154 NLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp TCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred CCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCc
Confidence 66777776652 3322 1222333322 3467788887765444
No 66
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.73 E-value=1.5e-08 Score=94.94 Aligned_cols=78 Identities=23% Similarity=0.352 Sum_probs=56.7
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCC-CCccccccccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQ-LPSNIEQVQVN 85 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~-lp~sL~~L~~~ 85 (341)
+.|+.|+|++|++. +..+..++.+++|++|+|++|.++.+ |..++.+++|+.|++++|++. .+|. ++++|+.|++.
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECC
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECC
Confidence 56788888888886 33344678888888888888888865 677888888888888888764 4543 45677777765
Q ss_pred cc
Q 039899 86 GC 87 (341)
Q Consensus 86 ~c 87 (341)
++
T Consensus 130 ~n 131 (330)
T 1xku_A 130 EN 131 (330)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 67
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.73 E-value=4.6e-08 Score=85.32 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=44.8
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQS 71 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~ 71 (341)
++|+.|+|++|++.. +|..++.+++|+.|+|++|.|+.+|. .+.++++|+.|+|++|++.+.
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence 467777777777753 77777777777777777777776653 577777777777777776543
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.73 E-value=2.8e-08 Score=100.45 Aligned_cols=136 Identities=17% Similarity=0.155 Sum_probs=83.8
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC----Ccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL----PSN 78 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l----p~s 78 (341)
+.++++|+.|+|++|.+.+ +|..++.+++|+.|+|++|.+..+ |..+..+++|+.|++++|...+.+|.- .++
T Consensus 274 ~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 6677788888888888753 787788888888888888888755 457778888888888888776665531 346
Q ss_pred ccccccccccccCcchhhhHHHH--hhchhccCCCCccccccCCC--CccccchhccCCCeEEEEcCC
Q 039899 79 IEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVPGS--EISKCFRYQKEDSAMAVTMPL 142 (341)
Q Consensus 79 L~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lPg~--~iP~wf~~~~~g~si~~~Lp~ 142 (341)
|+.|+++++. +..+...+..+. ..++.+++++|.+.+..|+. ..|..-.....++.++...|+
T Consensus 352 L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 352 LRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp CCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred CCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 6666665542 222211111221 23667777777776655543 334333334455555544443
No 69
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.72 E-value=4.7e-08 Score=83.91 Aligned_cols=61 Identities=16% Similarity=0.371 Sum_probs=36.4
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCcccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRL 69 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l 69 (341)
++|+.|+|++|++. +..|..++.+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|++.
T Consensus 33 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 33 TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 45666666666665 44455566666666666666666666554 355666666666666554
No 70
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.72 E-value=1.2e-08 Score=99.29 Aligned_cols=123 Identities=14% Similarity=0.116 Sum_probs=92.1
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s 78 (341)
.+..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+..+ |..++.+++|+.|+|++|++.+..|.. .++
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 3678899999999999997 66678899999999999999999965 568899999999999999997766643 357
Q ss_pred ccccccccccccCcchh-hhHHHHhhchhccCCCCccccccCCC-Cccccch
Q 039899 79 IEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVPGS-EISKCFR 128 (341)
Q Consensus 79 L~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lPg~-~iP~wf~ 128 (341)
|+.|+++++ .++.++. .+..+ ..++.+++++|.+.+..|.- .+..|+.
T Consensus 373 L~~L~L~~N-~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 422 (455)
T 3v47_A 373 LKELALDTN-QLKSVPDGIFDRL-TSLQKIWLHTNPWDCSCPRIDYLSRWLN 422 (455)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTC-TTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred ccEEECCCC-ccccCCHhHhccC-CcccEEEccCCCcccCCCcchHHHHHHH
Confidence 778888775 3444331 11111 34778889999998766632 3445654
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.71 E-value=2.1e-08 Score=93.65 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=73.4
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Ccccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIE 80 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~ 80 (341)
.+..+++|+.|+|++|.+.. +| .++.+++|+.|+|++|.++.+|. +..+++|+.|++++|++.+ +|.+ .++|+
T Consensus 80 ~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~ 154 (308)
T 1h6u_A 80 PLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQ 154 (308)
T ss_dssp GGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCC
T ss_pred hHccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCc-CccccCCCCcc
Confidence 36778888999999988863 54 68888888899998888888875 8888888888888887753 3322 25677
Q ss_pred ccccccccccCcchhhhHHHHhhchhccCCCCccccc
Q 039899 81 QVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIV 117 (341)
Q Consensus 81 ~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~ 117 (341)
.|+++++ .++.+.. ... ...++.+++++|.+...
T Consensus 155 ~L~l~~n-~l~~~~~-l~~-l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 155 YLSIGNA-QVSDLTP-LAN-LSKLTTLKADDNKISDI 188 (308)
T ss_dssp EEECCSS-CCCCCGG-GTT-CTTCCEEECCSSCCCCC
T ss_pred EEEccCC-cCCCChh-hcC-CCCCCEEECCCCccCcC
Confidence 7777665 3333322 111 12366667777776643
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.71 E-value=3.8e-08 Score=99.05 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=74.9
Q ss_pred CCCCCCCCcEEeccCCCCCCC--CCCccccCCCCCcEEEccCCCCCC-CChh-ccCCCCccEEEcCCccccccCCC-CCc
Q 039899 3 SLLGLCSLTKLDISDCNLGEG--AIPSDIGNICSLKELYLSKNRFFS-LPAS-INLLSKLWIIELEECQRLQSLPQ-LPS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg--~iP~~i~~L~~L~~L~Ls~N~~~~-LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~-lp~ 77 (341)
.+.++++|+.|+|++|++. + .+|..++.+++|+.|+|++|.++. +|.. +..+++|+.|++++|++.+.+|. +|+
T Consensus 372 ~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 450 (562)
T 3a79_B 372 GCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450 (562)
T ss_dssp TCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCT
T ss_pred hhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcC
Confidence 4667778888888888876 3 233567778888888888888875 7763 67778888888888887776664 446
Q ss_pred cccccccccccccCcchhhhHHHH--hhchhccCCCCccc
Q 039899 78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLS 115 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~ 115 (341)
+|+.|+++++ .++.+ |..+. ..++.+++++|.++
T Consensus 451 ~L~~L~L~~N-~l~~i---p~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 451 KVKVLDLHNN-RIMSI---PKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp TCSEEECCSS-CCCCC---CTTTTSSCCCSEEECCSSCCC
T ss_pred cCCEEECCCC-cCccc---ChhhcCCCCCCEEECCCCCCC
Confidence 7888887766 45543 33332 23677778888776
No 73
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.70 E-value=3.2e-08 Score=90.44 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=82.6
Q ss_pred CCCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Ccc
Q 039899 1 LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSN 78 (341)
Q Consensus 1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~s 78 (341)
+|.+..+++|+.|+|++|++.. +|. ++.+++|+.|+|++|.++.+|.... ++|+.|+|++|++.+ +|.+ .++
T Consensus 56 l~~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~-~~~l~~l~~ 129 (263)
T 1xeu_A 56 LAGMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRD-TDSLIHLKN 129 (263)
T ss_dssp CTTGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSB-SGGGTTCTT
T ss_pred chHHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCC-ChhhcCccc
Confidence 3567788999999999999973 766 9999999999999999999986444 999999999998854 5543 357
Q ss_pred ccccccccccccCcchhhhHHHHhhchhccCCCCccccc
Q 039899 79 IEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIV 117 (341)
Q Consensus 79 L~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~ 117 (341)
|+.|+++++ .++.++. ... ...++.+++++|.+.+.
T Consensus 130 L~~L~Ls~N-~i~~~~~-l~~-l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 130 LEILSIRNN-KLKSIVM-LGF-LSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCEEECTTS-CCCBCGG-GGG-CTTCCEEECTTSCCCBC
T ss_pred ccEEECCCC-cCCCChH-Hcc-CCCCCEEECCCCcCcch
Confidence 888888765 3444431 111 23478889999998864
No 74
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=6.1e-08 Score=82.68 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=66.9
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Cccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSNI 79 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL 79 (341)
+.++++|++|+|++|++. +..|..++.+++|+.|+|++|.++.+|.. +..+++|+.|+|++|++.+..+.. .++|
T Consensus 48 ~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126 (177)
T ss_dssp TTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence 678999999999999997 43344579999999999999999988864 689999999999999886433332 3567
Q ss_pred cccccccc
Q 039899 80 EQVQVNGC 87 (341)
Q Consensus 80 ~~L~~~~c 87 (341)
+.|++++.
T Consensus 127 ~~L~l~~N 134 (177)
T 2o6r_A 127 QKIWLHTN 134 (177)
T ss_dssp CEEECCSS
T ss_pred CEEEecCC
Confidence 77777665
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.69 E-value=2.7e-09 Score=99.55 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=68.4
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC---CCh--hccCCCCccEEEcCCccccccCCCC----
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS---LPA--SINLLSKLWIIELEECQRLQSLPQL---- 75 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~---LP~--si~~Ls~L~~L~Ls~c~~l~~lP~l---- 75 (341)
..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+.. +|. .++.+++|+.|+|++|++. .+|..
T Consensus 142 ~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l 219 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL 219 (310)
T ss_dssp TBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH
Confidence 35778888888888886 5566778888888888888888752 332 3467778888888888763 33321
Q ss_pred ---CccccccccccccccCcc-hhhhHHHH--hhchhccCCCCccc
Q 039899 76 ---PSNIEQVQVNGCASLGTL-SHALKLCK--SIDVEVSKPIPHLS 115 (341)
Q Consensus 76 ---p~sL~~L~~~~c~sL~~l-~~~p~~l~--~~l~~l~l~~n~~~ 115 (341)
.++|+.|+++++. ++.+ +.....+. ..++.+++++|.++
T Consensus 220 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred HhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 2466677766543 2222 11111111 34667777777776
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.69 E-value=1.5e-08 Score=103.07 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=34.7
Q ss_pred CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRL 69 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l 69 (341)
++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|+ .++.+++|+.|+|++|.+.
T Consensus 73 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 73 SFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp HCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence 4455566666666554 3333455556666666666665554443 3455566666666655554
No 77
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.69 E-value=5.6e-08 Score=86.85 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=82.3
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Cc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~ 77 (341)
.+.++++|+.|+|++|++. .+|. .++.+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|++. .+|.- .+
T Consensus 59 ~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 135 (229)
T 3e6j_A 59 VFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135 (229)
T ss_dssp TTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT
T ss_pred HhhCccCCcEEECCCCCCC--CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC
Confidence 4778999999999999996 3664 468999999999999999988864 689999999999999986 66642 35
Q ss_pred cccccccccccccCcchh-hhHHHHhhchhccCCCCcccc
Q 039899 78 NIEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSI 116 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~ 116 (341)
+|+.|++++. .++.++. .+.. ...++.+++++|.+..
T Consensus 136 ~L~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 136 HLTHLALDQN-QLKSIPHGAFDR-LSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TCSEEECCSS-CCCCCCTTTTTT-CTTCCEEECTTSCBCT
T ss_pred CCCEEECCCC-cCCccCHHHHhC-CCCCCEEEeeCCCccC
Confidence 6777777664 3444331 1111 1247788899998874
No 78
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=7e-08 Score=82.34 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=30.6
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCcccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRL 69 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l 69 (341)
++|+.|+|++|++. +..|..++.+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|++.
T Consensus 30 ~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 30 TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence 34555555555554 33344455555555555555555544443 345555555555555443
No 79
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.67 E-value=3.6e-08 Score=92.68 Aligned_cols=60 Identities=23% Similarity=0.302 Sum_probs=30.5
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR 68 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~ 68 (341)
..+++|+.|++++|.+.. ++. ++.+++|+.|+|++|.++.+|. +..+++|+.|++++|++
T Consensus 196 ~~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITD--ITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp GGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred cCCCccceeecccCCCCC--Cch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCcc
Confidence 344555555555555541 222 4555555555555555555444 55555555555555544
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.67 E-value=2.2e-08 Score=91.34 Aligned_cols=115 Identities=16% Similarity=0.264 Sum_probs=83.0
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccc-cCCCC---Cc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQ-SLPQL---PS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~-~lP~l---p~ 77 (341)
++.++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+..++. .++.+++|+.|++++|++.+ .+|.. .+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~ 149 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (276)
T ss_dssp TTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred HccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC
Confidence 4788999999999999997 5555779999999999999999997776 79999999999999998865 34542 25
Q ss_pred cccccccccccccCcch-hhhHHHHhhch----hccCCCCccccccCC
Q 039899 78 NIEQVQVNGCASLGTLS-HALKLCKSIDV----EVSKPIPHLSIVVPG 120 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~-~~p~~l~~~l~----~l~l~~n~~~~~lPg 120 (341)
+|+.|+++++. ++.+. ..+..+.+ ++ .+++++|.+.+..|+
T Consensus 150 ~L~~L~Ls~N~-l~~~~~~~~~~l~~-L~~l~l~L~ls~n~l~~~~~~ 195 (276)
T 2z62_A 150 NLEHLDLSSNK-IQSIYCTDLRVLHQ-MPLLNLSLDLSLNPMNFIQPG 195 (276)
T ss_dssp TCCEEECCSSC-CCEECGGGGHHHHT-CTTCCEEEECCSSCCCEECTT
T ss_pred CCCEEECCCCC-CCcCCHHHhhhhhh-ccccceeeecCCCcccccCcc
Confidence 67777777653 33322 22222222 33 567778877754443
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.67 E-value=3.7e-08 Score=99.17 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=57.7
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Cccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PSNI 79 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL 79 (341)
+..+++|+.|+|++|++.++.+|..++.+++|+.|+|++|.++.+ |..|+++++|+.|+|++|++.+..|.. .++|
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 345566666666666544233455566666666666666666643 445666666666666666654333321 1345
Q ss_pred cccccccccccCcch-hhhHHHHhhchhccCCCCccc
Q 039899 80 EQVQVNGCASLGTLS-HALKLCKSIDVEVSKPIPHLS 115 (341)
Q Consensus 80 ~~L~~~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~ 115 (341)
+.|++++.. +..+. .....+...++.+++++|.+.
T Consensus 545 ~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 545 QVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 555554432 22221 111111233556667777664
No 82
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.67 E-value=3.7e-08 Score=93.97 Aligned_cols=64 Identities=22% Similarity=0.164 Sum_probs=35.1
Q ss_pred CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQ 70 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~ 70 (341)
++++|+.|+|++|++. +..|..++.+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|++.+
T Consensus 62 ~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp CCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred cccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence 4555566666666554 2223345555666666666666554443 35555666666666655543
No 83
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.66 E-value=2.8e-08 Score=84.88 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=76.4
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCccccCCC-CCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Cc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNIC-SLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PS 77 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~-~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~ 77 (341)
|++..+++|+.|+|++|++.. +|. +..+. +|+.|+|++|.++.+ ..++.+++|+.|+|++|++.+..|.+ .+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 345677889999999999963 665 55544 999999999999987 57889999999999999886432232 35
Q ss_pred cccccccccccccCcchhhhHHHH--hhchhccCCCCccc
Q 039899 78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLS 115 (341)
Q Consensus 78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~ 115 (341)
+|+.|+++++ .+..++.+ ..+. ..++.+++++|.+.
T Consensus 89 ~L~~L~L~~N-~i~~~~~~-~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 89 DLTELILTNN-SLVELGDL-DPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp TCCEEECCSC-CCCCGGGG-GGGGGCTTCCEEECCSSGGG
T ss_pred CCCEEECCCC-cCCcchhh-HhhhcCCCCCEEEecCCCCC
Confidence 7777777665 33443321 0222 23777888888876
No 84
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.66 E-value=5.3e-08 Score=84.94 Aligned_cols=67 Identities=24% Similarity=0.301 Sum_probs=59.7
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQ 70 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~ 70 (341)
++.++++|+.|+|++|.+. +..|..+..+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|++..
T Consensus 49 ~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 49 ELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp GGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred HhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 5678899999999999998 5555679999999999999999997775 79999999999999999863
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.66 E-value=1.6e-08 Score=101.13 Aligned_cols=66 Identities=32% Similarity=0.373 Sum_probs=30.7
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC--CCChhccCCCCccEEEcCCcccccc
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF--SLPASINLLSKLWIIELEECQRLQS 71 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~--~LP~si~~Ls~L~~L~Ls~c~~l~~ 71 (341)
.++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+. .+|..+..+++|+.|++++|++.+.
T Consensus 418 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp TTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred hcCCCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 34444444444444444 334444444444444444444443 3444444444444444444444433
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.65 E-value=6.5e-08 Score=90.55 Aligned_cols=63 Identities=24% Similarity=0.359 Sum_probs=36.3
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCcccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRL 69 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l 69 (341)
+.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+|..+. ++|+.|++++|++.
T Consensus 72 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 72 FKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEIT 134 (330)
T ss_dssp TTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCC
T ss_pred hccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCccc
Confidence 455556666666666664 3335556666666666666666665555443 45666666666554
No 87
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.65 E-value=3.4e-08 Score=97.08 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=58.3
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s 78 (341)
++.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+|. .+.++++|+.|+|++|++.+..|.. .++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 51 EFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred HccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 4667778888888888876 5557778888888888888888887775 3677888888888888776554432 235
Q ss_pred ccccccc
Q 039899 79 IEQVQVN 85 (341)
Q Consensus 79 L~~L~~~ 85 (341)
|+.|++.
T Consensus 130 L~~L~l~ 136 (477)
T 2id5_A 130 LKSLEVG 136 (477)
T ss_dssp CCEEEEC
T ss_pred CCEEECC
Confidence 5555553
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.65 E-value=1.7e-08 Score=106.82 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=55.7
Q ss_pred CCCCCCCCcEEeccCCCCCCCCC-CccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC-----
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAI-PSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL----- 75 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~i-P~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l----- 75 (341)
++.++++|++|+|++|... +.+ |..++++++|+.|+|++|.+..+ |..++++++|+.|+|++|.+.+.+|.-
T Consensus 43 ~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SCSSCCSCSEEEECTTCCC-CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred HCcccccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 4667777777777777655 556 56677777777777777777744 667777777777777777776644431
Q ss_pred Ccccccccccc
Q 039899 76 PSNIEQVQVNG 86 (341)
Q Consensus 76 p~sL~~L~~~~ 86 (341)
.++|+.|++++
T Consensus 122 L~~L~~L~Ls~ 132 (844)
T 3j0a_A 122 LKALTRLDLSK 132 (844)
T ss_dssp CSSCCEEEEES
T ss_pred cCCCCEEECCC
Confidence 24556665544
No 89
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.65 E-value=5.3e-08 Score=98.45 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=56.5
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCC---CCcc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQ---LPSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~---lp~s 78 (341)
++.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.+..+ |..++++++|+.|++++|++.+..|. -.++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred HhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 4677788888888888876 55577778888888888888877743 56777777777777777776542121 1235
Q ss_pred cccccccc
Q 039899 79 IEQVQVNG 86 (341)
Q Consensus 79 L~~L~~~~ 86 (341)
|+.|++++
T Consensus 131 L~~L~L~~ 138 (606)
T 3t6q_A 131 LESLYLGS 138 (606)
T ss_dssp CCEEECCS
T ss_pred ccEEECCC
Confidence 55555543
No 90
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.64 E-value=5.7e-08 Score=92.62 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=82.1
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCC-C-----
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQ-L----- 75 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~-l----- 75 (341)
++.++++|+.|+|++|++. +..|..+..+++|+.|+|++|.|+.+ |..+..+++|+.|+|++|++.+ +|. .
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~ 160 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGN 160 (361)
T ss_dssp TTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC---
T ss_pred hccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcc
Confidence 4788999999999999997 43345689999999999999999966 5689999999999999998864 543 2
Q ss_pred -CccccccccccccccCcch-hhhHHHHh-hchhccCCCCccc
Q 039899 76 -PSNIEQVQVNGCASLGTLS-HALKLCKS-IDVEVSKPIPHLS 115 (341)
Q Consensus 76 -p~sL~~L~~~~c~sL~~l~-~~p~~l~~-~l~~l~l~~n~~~ 115 (341)
.++|+.|++++. .++.++ .....+.. .++.+++++|.+.
T Consensus 161 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 161 KLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 457777887664 344443 11222222 1467788888875
No 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.64 E-value=6.1e-08 Score=98.61 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=68.5
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~s 78 (341)
++..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|.. ++.+++|+.|+|++|.+.+..|.. .++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172 (597)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred HhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence 6788999999999999997 65566689999999999999999988876 488999999999999887766542 356
Q ss_pred ccccccccc
Q 039899 79 IEQVQVNGC 87 (341)
Q Consensus 79 L~~L~~~~c 87 (341)
|+.|+++++
T Consensus 173 L~~L~L~~N 181 (597)
T 3oja_B 173 LQNLQLSSN 181 (597)
T ss_dssp CCEEECTTS
T ss_pred CcEEECcCC
Confidence 777777654
No 92
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.64 E-value=4.2e-08 Score=92.18 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=69.2
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNI 79 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL 79 (341)
|.+..+++|++|+|++|.+.+ +|. ++.+++|+.|+|++|.++.+| .+..+++|+.|++++|++.+ +|.+ .++|
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~-~~~~~~l~~L 134 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISD-ISPLANLTKM 134 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCC-CGGGTTCTTC
T ss_pred hhhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccC-chhhccCCce
Confidence 456677788888888888763 655 778888888888888888776 57788888888888887643 3322 3466
Q ss_pred cccccccccccCcchhhhHHHHhhchhccCCCCccc
Q 039899 80 EQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLS 115 (341)
Q Consensus 80 ~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~ 115 (341)
+.|++++|..+..+..+ .. ...++.++++++.+.
T Consensus 135 ~~L~l~~n~~~~~~~~~-~~-l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSPL-SN-MTGLNYLTVTESKVK 168 (347)
T ss_dssp CEEECTTCTTCCCCGGG-TT-CTTCCEEECCSSCCC
T ss_pred eEEECCCCCCcccccch-hh-CCCCcEEEecCCCcC
Confidence 77777666555444321 00 112455555555554
No 93
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.64 E-value=7.4e-08 Score=95.08 Aligned_cols=103 Identities=23% Similarity=0.208 Sum_probs=67.9
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccccc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQ 81 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~ 81 (341)
|++.++++|+.|++++|.+. + +|... ++|+.|+|++|.++.+| .++.+++|+.|++++|++. .+|..+++|+.
T Consensus 189 ~~~~~l~~L~~L~l~~N~l~-~-l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~ 261 (454)
T 1jl5_A 189 PELQNLPFLTAIYADNNSLK-K-LPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEA 261 (454)
T ss_dssp CCCTTCTTCCEEECCSSCCS-S-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCSCCTTCCE
T ss_pred ccccCCCCCCEEECCCCcCC-c-CCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCC-cccccccccCE
Confidence 55666667777777777765 2 55432 46777777777777777 4777888888888888774 47777778888
Q ss_pred cccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899 82 VQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI 116 (341)
Q Consensus 82 L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~ 116 (341)
|+++++. ++.++..+ ..++.+++++|.+++
T Consensus 262 L~l~~N~-l~~l~~~~----~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 262 LNVRDNY-LTDLPELP----QSLTFLDVSENIFSG 291 (454)
T ss_dssp EECCSSC-CSCCCCCC----TTCCEEECCSSCCSE
T ss_pred EECCCCc-ccccCccc----CcCCEEECcCCccCc
Confidence 8776653 44433222 346666777777665
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.63 E-value=3e-08 Score=88.65 Aligned_cols=55 Identities=29% Similarity=0.409 Sum_probs=30.5
Q ss_pred CCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCC-CCCCCh-hccCCCCccEEEcCC
Q 039899 9 SLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNR-FFSLPA-SINLLSKLWIIELEE 65 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~-~~~LP~-si~~Ls~L~~L~Ls~ 65 (341)
+|+.|+|++|++. + +|. .++.+++|+.|+|++|. ++.+|. .+.++++|+.|++++
T Consensus 32 ~l~~L~l~~n~l~-~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 32 STQTLKLIETHLR-T-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TCCEEEEESCCCS-E-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred cccEEEEeCCcce-E-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 4556666666654 2 333 45555666666666664 555543 455556666666655
No 95
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.63 E-value=2.8e-08 Score=95.25 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=45.7
Q ss_pred CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCCC-C---Cccc
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLPQ-L---PSNI 79 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP~-l---p~sL 79 (341)
.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.+..+| ..++.+++|+.|+|++|++. .+|. . .++|
T Consensus 66 ~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 143 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 143 (390)
T ss_dssp HHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred cccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCC
Confidence 44566666666666665 323345666666666666666666544 34566666666666666554 3332 1 3455
Q ss_pred cccccccc
Q 039899 80 EQVQVNGC 87 (341)
Q Consensus 80 ~~L~~~~c 87 (341)
+.|+++++
T Consensus 144 ~~L~L~~n 151 (390)
T 3o6n_A 144 TTLSMSNN 151 (390)
T ss_dssp CEEECCSS
T ss_pred cEEECCCC
Confidence 55555544
No 96
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.63 E-value=2.1e-08 Score=93.52 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=85.2
Q ss_pred CCCCCcEEeccCCCCCCCCCCccc--cCCCCCcEEEccCCCCCCCChhccCC-----CCccEEEcCCccccccCCCC---
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDI--GNICSLKELYLSKNRFFSLPASINLL-----SKLWIIELEECQRLQSLPQL--- 75 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i--~~L~~L~~L~Ls~N~~~~LP~si~~L-----s~L~~L~Ls~c~~l~~lP~l--- 75 (341)
++++|++|+|++|.+. |.+|..+ +.+++|+.|+|++|.++.+|..++.+ ++|+.|+|++|++.+..|..
T Consensus 93 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 5889999999999998 8899987 99999999999999999889888888 99999999999987655442
Q ss_pred CccccccccccccccCcchhhhHHH----HhhchhccCCCCccc
Q 039899 76 PSNIEQVQVNGCASLGTLSHALKLC----KSIDVEVSKPIPHLS 115 (341)
Q Consensus 76 p~sL~~L~~~~c~sL~~l~~~p~~l----~~~l~~l~l~~n~~~ 115 (341)
.++|+.|+++++.-...+ .++..+ ...++.+++++|.+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~-~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGER-GLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp CSSCCEEECCSCTTCHHH-HHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCcCcch-HHHHHHHhccCCCCCEEECCCCcCc
Confidence 457788888776422211 122222 134788899999887
No 97
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.63 E-value=3.9e-08 Score=84.02 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=77.3
Q ss_pred CCCCCCC-CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhc-cCCCCccEEEcCCccccccCCCC----
Q 039899 2 PSLLGLC-SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI-NLLSKLWIIELEECQRLQSLPQL---- 75 (341)
Q Consensus 2 Psl~~L~-~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si-~~Ls~L~~L~Ls~c~~l~~lP~l---- 75 (341)
|.+..+. +|+.|+|++|.+. + + ..++.+++|+.|+|++|.++.+|+.+ ..+++|+.|++++|++ +.+|.+
T Consensus 35 ~~~~~~~~~L~~L~Ls~N~l~-~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~ 110 (176)
T 1a9n_A 35 ENLGATLDQFDAIDFSDNEIR-K-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLA 110 (176)
T ss_dssp CCGGGGTTCCSEEECCSSCCC-E-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGG
T ss_pred HHhhhcCCCCCEEECCCCCCC-c-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhh
Confidence 4455555 8999999999997 3 5 68899999999999999999888765 8999999999999988 555541
Q ss_pred -CccccccccccccccCcchhhhH-HHH--hhchhccCCCCccc
Q 039899 76 -PSNIEQVQVNGCASLGTLSHALK-LCK--SIDVEVSKPIPHLS 115 (341)
Q Consensus 76 -p~sL~~L~~~~c~sL~~l~~~p~-~l~--~~l~~l~l~~n~~~ 115 (341)
.++|+.|+++++. +..++.... .+. ..++.++++.|...
T Consensus 111 ~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 111 SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 2466777776653 222222100 122 23677777776654
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.62 E-value=2.4e-08 Score=89.31 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=77.0
Q ss_pred CCCCCCCCcEEeccC-CCCCCCCCC-ccccCCCCCcEEEccCCCCCCCChhccCCCCcc---EEEcCCc-cccccCCC-C
Q 039899 3 SLLGLCSLTKLDISD-CNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPASINLLSKLW---IIELEEC-QRLQSLPQ-L 75 (341)
Q Consensus 3 sl~~L~~L~~LdLs~-~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~---~L~Ls~c-~~l~~lP~-l 75 (341)
++.++++|+.|+|++ |++. + +| ..++.+++|+.|+|++|.++.+|. ++.+++|+ .|++++| ++ ..+|. .
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~-~-i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l-~~i~~~~ 150 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLT-Y-IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYM-TSIPVNA 150 (239)
T ss_dssp TEESCTTCCEEEEEEETTCC-E-ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTC-CEECTTT
T ss_pred HcCCCcCCcEEECCCCCCee-E-cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcch-hhcCccc
Confidence 467889999999998 8886 3 55 568899999999999999999987 88888888 9999999 55 44443 1
Q ss_pred ---Ccccc-ccccccccccCcchhhhHHHH--hhchhccCCCCc-cccccC
Q 039899 76 ---PSNIE-QVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPH-LSIVVP 119 (341)
Q Consensus 76 ---p~sL~-~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~-~~~~lP 119 (341)
.++|+ .|+++++ .++.++ .... ..++.+++++|. +....|
T Consensus 151 ~~~l~~L~~~L~l~~n-~l~~i~---~~~~~~~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNN-GFTSVQ---GYAFNGTKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp TTTTBSSEEEEECCSC-CCCEEC---TTTTTTCEEEEEECTTCTTCCEECT
T ss_pred ccchhcceeEEEcCCC-CCcccC---HhhcCCCCCCEEEcCCCCCcccCCH
Confidence 24566 6766554 233332 2211 347788888884 764333
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.62 E-value=4.5e-08 Score=99.66 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=82.2
Q ss_pred CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCcccccccccccc
Q 039899 9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCA 88 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~~c~ 88 (341)
+|+.|+|++|++. + +|. .+++|+.|+|++|.|+.+|. .+++|+.|+|++|++.+ +|.++++|+.|+++++
T Consensus 121 ~L~~L~Ls~N~l~-~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~l~~~L~~L~Ls~N- 190 (571)
T 3cvr_A 121 SLKHLDVDNNQLT-M-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPELPESLEALDVSTN- 190 (571)
T ss_dssp TCCEEECCSSCCS-C-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS-
T ss_pred CCCEEECCCCcCC-C-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cchhhCCCCEEECcCC-
Confidence 8899999999997 4 887 68889999999999998886 57889999999998755 7777788888888776
Q ss_pred ccCcchhhhHHHH---hhchhccCCCCccccccCCCCccccchhccCCCeEEEEcCCCCC
Q 039899 89 SLGTLSHALKLCK---SIDVEVSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLR 145 (341)
Q Consensus 89 sL~~l~~~p~~l~---~~l~~l~l~~n~~~~~lPg~~iP~wf~~~~~g~si~~~Lp~~~~ 145 (341)
.++.++.++.++. ..++.+++++|.++ .||.++.. ..+...+.|..|..
T Consensus 191 ~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~------~lp~~l~~--l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 191 LLESLPAVPVRNHHSEETEIFFRCRENRIT------HIPENILS--LDPTCTIILEDNPL 242 (571)
T ss_dssp CCSSCCCCC--------CCEEEECCSSCCC------CCCGGGGG--SCTTEEEECCSSSC
T ss_pred CCCchhhHHHhhhcccccceEEecCCCcce------ecCHHHhc--CCCCCEEEeeCCcC
Confidence 4555544322110 01277888888887 45554432 22344455554443
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.62 E-value=5.2e-08 Score=90.29 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=82.4
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Ccccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIE 80 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~ 80 (341)
.+.++++|+.|+|++|.+.. +| .++.+++|+.|+|++|.++.+| .+..+++|+.|++++|++.+ ++.+ .++|+
T Consensus 85 ~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~ 159 (291)
T 1h6t_A 85 PLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLD 159 (291)
T ss_dssp GGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCS
T ss_pred ccccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-chhhccCCCCC
Confidence 36789999999999999973 55 4999999999999999999885 68999999999999998854 3432 35788
Q ss_pred ccccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899 81 QVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI 116 (341)
Q Consensus 81 ~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~ 116 (341)
.|+++++ .+..+.. ... ...++.+++++|.++.
T Consensus 160 ~L~L~~N-~l~~~~~-l~~-l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 160 TLSLEDN-QISDIVP-LAG-LTKLQNLYLSKNHISD 192 (291)
T ss_dssp EEECCSS-CCCCCGG-GTT-CTTCCEEECCSSCCCB
T ss_pred EEEccCC-ccccchh-hcC-CCccCEEECCCCcCCC
Confidence 8888776 3444432 111 2347888999998874
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.61 E-value=1.6e-08 Score=100.61 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=63.8
Q ss_pred CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccccccccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVN 85 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~ 85 (341)
.+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+++ ++.+++|+.|+|++|.+.+ +|.. ++|+.|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~~-~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LLVG-PSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EEEC-TTCCEEECC
T ss_pred cCCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CCCC-CCcCEEECc
Confidence 3458999999999998 6566789999999999999999996665 9999999999999998754 4432 577777776
Q ss_pred cc
Q 039899 86 GC 87 (341)
Q Consensus 86 ~c 87 (341)
++
T Consensus 108 ~N 109 (487)
T 3oja_A 108 NN 109 (487)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 102
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.60 E-value=4.1e-08 Score=100.70 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=40.6
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRL 69 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l 69 (341)
+.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+|. .++++++|++|++++|++.
T Consensus 45 ~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 110 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110 (680)
T ss_dssp GGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred HhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC
Confidence 455666666666666665 4445556666666666666666666664 4666666666666666654
No 103
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.60 E-value=1.2e-07 Score=94.69 Aligned_cols=83 Identities=22% Similarity=0.272 Sum_probs=56.1
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCCCC----Cc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLPQL----PS 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP~l----p~ 77 (341)
++.++++|++|+|++|++. +..|..++.+++|++|+|++|.++.+| ..++++++|+.|++++|++.+ +|.. ..
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-CCCccccccc
Confidence 4677788888888888876 433556777888888888888877555 567777777777777776542 3321 23
Q ss_pred cccccccccc
Q 039899 78 NIEQVQVNGC 87 (341)
Q Consensus 78 sL~~L~~~~c 87 (341)
+|+.|+++++
T Consensus 125 ~L~~L~L~~n 134 (570)
T 2z63_A 125 TLKELNVAHN 134 (570)
T ss_dssp TCCEEECCSS
T ss_pred cccEEecCCC
Confidence 5555555443
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.60 E-value=6.1e-08 Score=98.54 Aligned_cols=84 Identities=25% Similarity=0.243 Sum_probs=72.4
Q ss_pred CCCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccC-CCC---C
Q 039899 1 LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSL-PQL---P 76 (341)
Q Consensus 1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~l-P~l---p 76 (341)
+|.++.|++|+.|+|++|++. .+|..++.+++|+.|+|++|.|+.+| .++.|++|+.|+|++|++.+.+ |.. .
T Consensus 456 lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l 532 (567)
T 1dce_A 456 LCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSC 532 (567)
T ss_dssp CCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred CcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcC
Confidence 577889999999999999996 49999999999999999999999999 8999999999999999987654 542 3
Q ss_pred ccccccccccc
Q 039899 77 SNIEQVQVNGC 87 (341)
Q Consensus 77 ~sL~~L~~~~c 87 (341)
++|+.|+++++
T Consensus 533 ~~L~~L~L~~N 543 (567)
T 1dce_A 533 PRLVLLNLQGN 543 (567)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEEecCC
Confidence 46667777654
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.60 E-value=5.5e-08 Score=96.79 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=21.2
Q ss_pred CCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccC
Q 039899 32 ICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSL 72 (341)
Q Consensus 32 L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~l 72 (341)
+++|+.|+|++|.++.+ |..++.+++|+.|+|++|.+.+.+
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 44555555555555533 334555555555555555554433
No 106
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.59 E-value=9.7e-08 Score=81.45 Aligned_cols=65 Identities=26% Similarity=0.319 Sum_probs=58.2
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRL 69 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l 69 (341)
++.++++|+.|+|++|++. + +|. .++.+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|.+.
T Consensus 49 ~~~~l~~L~~L~Ls~N~l~-~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 49 VFDRLTQLTRLDLDNNQLT-V-LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTTTCTTCSEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhcCcccCCEEECCCCCcC-c-cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4788999999999999997 4 555 46899999999999999998887 5899999999999999875
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.59 E-value=7.2e-08 Score=98.79 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIEQ 81 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~~ 81 (341)
+..|++|+.|+|++|.+.. +| .++.+++|+.|+|++|.+..+| .+..|++|+.|+|++|++.+ ++.+ .++|+.
T Consensus 83 l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~ 157 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLDT 157 (605)
T ss_dssp GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-CGGGGSCTTCSE
T ss_pred hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-chhhcccCCCCE
Confidence 5667777888888887752 44 6777777788888777777765 47777777777777777643 3322 346666
Q ss_pred cccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899 82 VQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI 116 (341)
Q Consensus 82 L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~ 116 (341)
|+++++ .+..+.. ... ...|+.|++++|.++.
T Consensus 158 L~Ls~N-~l~~~~~-l~~-l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 158 LSLEDN-QISDIVP-LAG-LTKLQNLYLSKNHISD 189 (605)
T ss_dssp EECCSS-CCCCCGG-GTT-CTTCCEEECCSSCCCB
T ss_pred EECcCC-cCCCchh-hcc-CCCCCEEECcCCCCCC
Confidence 666555 2332221 000 1235566666666654
No 108
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.59 E-value=9.1e-08 Score=94.12 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=49.5
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCC-CCCccccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLP-QLPSNIEQ 81 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP-~lp~sL~~ 81 (341)
.+..+++|+.|++++|.+. + ++. ++.+++|+.|+|++|.+..+|. +..+++|+.|++++|++.+..| .-.++|+.
T Consensus 238 ~l~~l~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 313 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQIS-N-LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTY 313 (466)
T ss_dssp GGGGCTTCSEEECCSSCCC-C-CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSE
T ss_pred hhhcCCCCCEEECCCCccc-c-chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCE
Confidence 4556667777777777775 3 333 6667777777777777776665 6666777777777766543221 11245555
Q ss_pred cccccc
Q 039899 82 VQVNGC 87 (341)
Q Consensus 82 L~~~~c 87 (341)
|+++++
T Consensus 314 L~L~~n 319 (466)
T 1o6v_A 314 LTLYFN 319 (466)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 555554
No 109
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.57 E-value=1.2e-07 Score=97.45 Aligned_cols=70 Identities=27% Similarity=0.304 Sum_probs=37.7
Q ss_pred CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCcccccccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQV 84 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~ 84 (341)
.+++|++|+|++|++.. +|. .+++|+.|+|++|.++.+|.. +++|+.|+|++|++. .+|..|++|+.|++
T Consensus 99 ~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L 168 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTH--LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWA 168 (622)
T ss_dssp CCTTCCEEEECSCCCCC--CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEEC
T ss_pred CCCCCCEEECcCCcCCC--CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-CcCCccCCCCEEEC
Confidence 45566666666666642 554 345566666666666655543 255555555555443 34444444444433
No 110
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.56 E-value=1.3e-07 Score=81.04 Aligned_cols=65 Identities=25% Similarity=0.289 Sum_probs=58.7
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCcccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRL 69 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l 69 (341)
.+.++++|+.|+|++|++. + +|.. ++.+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|.+.
T Consensus 52 ~~~~l~~L~~L~Ls~N~l~-~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 52 VFDHLVNLQQLYFNSNKLT-A-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTTCTTCCEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred HhcCCcCCCEEECCCCCCC-c-cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 4788999999999999997 3 7665 68999999999999999999875 999999999999999875
No 111
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.56 E-value=1.6e-07 Score=87.95 Aligned_cols=81 Identities=26% Similarity=0.299 Sum_probs=63.2
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccc--cCCCCCc--
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQ--SLPQLPS-- 77 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~--~lP~lp~-- 77 (341)
++.++++|++|+|++|.+.+ +|..+. ++|+.|+|++|.+..+|. .+..+++|+.|++++|.+.. ..|....
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVE--IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCS--CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred HhhCcCCCCEEECCCCcCCc--cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 47889999999999999964 888776 899999999999998876 58899999999999998842 3332211
Q ss_pred cccccccccc
Q 039899 78 NIEQVQVNGC 87 (341)
Q Consensus 78 sL~~L~~~~c 87 (341)
+|+.|++.++
T Consensus 173 ~L~~L~l~~n 182 (332)
T 2ft3_A 173 KLNYLRISEA 182 (332)
T ss_dssp CCSCCBCCSS
T ss_pred ccCEEECcCC
Confidence 5666666554
No 112
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.56 E-value=1.7e-07 Score=89.68 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=68.9
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~s 78 (341)
++.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+|.. ++++++|+.|++++|++.+..|.. .++
T Consensus 88 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166 (390)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred hccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence 5788999999999999997 55566789999999999999999999976 488999999999999887655542 356
Q ss_pred ccccccccc
Q 039899 79 IEQVQVNGC 87 (341)
Q Consensus 79 L~~L~~~~c 87 (341)
|+.|++.++
T Consensus 167 L~~L~l~~n 175 (390)
T 3o6n_A 167 LQNLQLSSN 175 (390)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 777777654
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.55 E-value=1.6e-07 Score=92.84 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=39.2
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCcccc
Q 039899 2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRL 69 (341)
Q Consensus 2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l 69 (341)
|++..+++|++|+|++|++. + +| ++.+++|+.|+|++|.++.+| ++++++|+.|++++|++.
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~-~-~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNIT-T-LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLT 119 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCS-C-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCS
T ss_pred hhhcccCCCCEEEccCCcCC-e-Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCC
Confidence 45566666777777777665 2 44 666666666666666666654 566666666666666554
No 114
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.55 E-value=1.4e-07 Score=96.84 Aligned_cols=71 Identities=31% Similarity=0.389 Sum_probs=44.5
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccccccccccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGC 87 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~~c 87 (341)
++|+.|+|++|++.. +|. .+++|+.|+|++|.|+.+|. .+++|+.|+|++|++. .+|..+++|+.|++.++
T Consensus 61 ~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT-HLPALPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSC--CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC-CCCCCCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCC--CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC-CCCCCCCCcCEEECCCC
Confidence 567777777777653 665 45667777777777776665 5566666666666553 35555556666655444
No 115
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.55 E-value=2.1e-07 Score=95.45 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=33.5
Q ss_pred CCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCcccccc
Q 039899 5 LGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQS 71 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~ 71 (341)
.++++|++|+|++|.+.. +|. .++.+++|++|+|++|.++.+| ..++++++|+.|++++|++.+.
T Consensus 70 ~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 136 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136 (680)
T ss_dssp HHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC
T ss_pred hcccCcCEEECCCCccCc--cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc
Confidence 344555555555555542 443 3555555555555555555444 3455555555555555554443
No 116
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.54 E-value=3.2e-08 Score=93.61 Aligned_cols=108 Identities=21% Similarity=0.230 Sum_probs=79.4
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCCh--hccCCCCccEEEcCCccccccCC-CC---
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFFSLPA--SINLLSKLWIIELEECQRLQSLP-QL--- 75 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~~LP~--si~~Ls~L~~L~Ls~c~~l~~lP-~l--- 75 (341)
++.++++|++|+|++|.+.. +|.. ++.+++|+.|+|++|.++.+|. .+..+++|+.|++++|...+.++ ..
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 47889999999999999973 7766 8999999999999999999987 78999999999999996555553 22
Q ss_pred CccccccccccccccCcchhhhHHHH--hhchhccCCCCccc
Q 039899 76 PSNIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLS 115 (341)
Q Consensus 76 p~sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~ 115 (341)
.++|+.|++.++. +..+ .|..+. ..++.+++++|.+.
T Consensus 173 l~~L~~L~l~~n~-l~~~--~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 173 LTFLEELEIDASD-LQSY--EPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp CCEEEEEEEEETT-CCEE--CTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCEEECCCCC-cCcc--CHHHHhccccCCeecCCCCccc
Confidence 3467777776553 2221 122221 23666677777664
No 117
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.53 E-value=1.3e-07 Score=99.99 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=65.4
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChh--ccCCCCccEEEcCCccccccCCC----C
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPAS--INLLSKLWIIELEECQRLQSLPQ----L 75 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~s--i~~Ls~L~~L~Ls~c~~l~~lP~----l 75 (341)
++.++++|++|+|++|++. +..|..++.+++|+.|+|++|.+. .+|.. ++++++|+.|+|++|.+.+..|. -
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp TTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred HhcCCCCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 4788889999999999987 666888999999999999999888 46655 88899999999999888664331 1
Q ss_pred Cccccccccccc
Q 039899 76 PSNIEQVQVNGC 87 (341)
Q Consensus 76 p~sL~~L~~~~c 87 (341)
.++|+.|+++++
T Consensus 147 L~~L~~L~Ls~N 158 (844)
T 3j0a_A 147 LNSLKSIDFSSN 158 (844)
T ss_dssp CSSCCEEEEESS
T ss_pred CCCCCEEECCCC
Confidence 346677776554
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.51 E-value=2.2e-07 Score=91.74 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=45.3
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC-CCcccccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ-LPSNIEQV 82 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~-lp~sL~~L 82 (341)
+..+++|+.|++++|++. + +| ++.+++|+.|+|++|.++.++ ++.+++|+.|++++|++.+ +|- -.++|+.|
T Consensus 166 ~~~l~~L~~L~ls~n~l~-~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L 238 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKIT-E-LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYF 238 (457)
T ss_dssp CTTCTTCCEEECCSSCCC-C-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CCCTTCTTCSEE
T ss_pred cccCCcCCEEECCCCccc-e-ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cCccccCCCCEE
Confidence 456677777777777775 2 55 666666666666666666553 5666666666666666544 441 12344555
Q ss_pred cccc
Q 039899 83 QVNG 86 (341)
Q Consensus 83 ~~~~ 86 (341)
++++
T Consensus 239 ~l~~ 242 (457)
T 3bz5_A 239 DCSV 242 (457)
T ss_dssp ECCS
T ss_pred EeeC
Confidence 4443
No 119
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.50 E-value=1.9e-07 Score=91.81 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=58.9
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s 78 (341)
.+.++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|. .+..+++|+.|+|++|.+.+..+.. .++
T Consensus 123 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201 (477)
T ss_dssp TTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred HccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence 4677888888888888886 5556678888888888888888887774 5777777777777777765433321 234
Q ss_pred ccccccccc
Q 039899 79 IEQVQVNGC 87 (341)
Q Consensus 79 L~~L~~~~c 87 (341)
|+.|++.++
T Consensus 202 L~~L~l~~~ 210 (477)
T 2id5_A 202 LKVLEISHW 210 (477)
T ss_dssp CCEEEEECC
T ss_pred cceeeCCCC
Confidence 555555444
No 120
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.50 E-value=2e-08 Score=93.94 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=76.4
Q ss_pred CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccccccccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVN 85 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~ 85 (341)
.+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+++ +..+++|+.|++++|++.+ +|. +++|+.|++.
T Consensus 32 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~-l~~-~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LLV-GPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE-EEE-CTTCCEEECC
T ss_pred cCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc-ccC-CCCcCEEECC
Confidence 4568999999999997 5556789999999999999999997765 9999999999999998753 443 2678888876
Q ss_pred cccccCcchhhhHHHHhhchhccCCCCccccc
Q 039899 86 GCASLGTLSHALKLCKSIDVEVSKPIPHLSIV 117 (341)
Q Consensus 86 ~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~ 117 (341)
++. +..+. ......++.+++++|.+.+.
T Consensus 108 ~n~-l~~~~---~~~~~~L~~L~l~~N~l~~~ 135 (317)
T 3o53_A 108 NNN-ISRVS---CSRGQGKKNIYLANNKITML 135 (317)
T ss_dssp SSC-CSEEE---ECCCSSCEEEECCSSCCCSG
T ss_pred CCc-cCCcC---ccccCCCCEEECCCCCCCCc
Confidence 652 22221 11112356666777766643
No 121
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.49 E-value=1.5e-07 Score=87.88 Aligned_cols=60 Identities=13% Similarity=0.008 Sum_probs=27.6
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-Chhc-cCCCCccEEEcCCccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASI-NLLSKLWIIELEECQR 68 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si-~~Ls~L~~L~Ls~c~~ 68 (341)
++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+..+ |..+ ..+++|+.|+|++|++
T Consensus 120 ~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 120 QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp SSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 34444444444444 22233444455555555555555532 2223 2445555555555544
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.49 E-value=4e-07 Score=80.80 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=85.8
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSN 78 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~s 78 (341)
++..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|++.+..|.. .++
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 129 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129 (220)
T ss_dssp SSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC
Confidence 5788999999999999998 66688999999999999999999999975 688999999999999987655543 357
Q ss_pred ccccccccccccCcchh-hhHHHHhhchhccCCCCccc
Q 039899 79 IEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLS 115 (341)
Q Consensus 79 L~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~ 115 (341)
|+.|+++++ .++.+.. .+.. ...++.+++++|.+.
T Consensus 130 L~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 130 LNLLSLYDN-KLQTIAKGTFSP-LRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCEEECCSS-CCSCCCTTTTTT-CTTCCEEECCSSCEE
T ss_pred CCEEECCCC-cCCEECHHHHhC-CCCCCEEEeCCCCcC
Confidence 777887665 3333321 1111 123778889999885
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.43 E-value=1.8e-09 Score=94.21 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=28.6
Q ss_pred CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR 68 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~ 68 (341)
.+++|+.|+|++|.+.. +| .++.+++|+.|+|++|.++.+|..+..+++|+.|++++|++
T Consensus 46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC
T ss_pred cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC
Confidence 34444555555544431 44 44444455555555554444444444444455555554444
No 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.40 E-value=3.2e-07 Score=90.17 Aligned_cols=80 Identities=23% Similarity=0.286 Sum_probs=46.7
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCC-CCCcccccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLP-QLPSNIEQV 82 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP-~lp~sL~~L 82 (341)
++.+++|+.|++++|.+.+ ++ .++.+++|+.|+|++|.+..++. +..+++|+.|++++|++.+..| .-.++|+.|
T Consensus 217 ~~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 292 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKD--IG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNL 292 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred ccccCCCCEEECCCCCccc--ch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeE
Confidence 3455666677777766652 33 46666667777777776666554 6666667777777666543211 112455555
Q ss_pred ccccc
Q 039899 83 QVNGC 87 (341)
Q Consensus 83 ~~~~c 87 (341)
++.++
T Consensus 293 ~L~~n 297 (466)
T 1o6v_A 293 ELNEN 297 (466)
T ss_dssp ECCSS
T ss_pred EcCCC
Confidence 55443
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.36 E-value=6.6e-08 Score=90.28 Aligned_cols=87 Identities=16% Similarity=0.271 Sum_probs=48.1
Q ss_pred CCCCCCCcEEeccCCCCCCCC-CCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCcc-ccc-cCCCC---C
Q 039899 4 LLGLCSLTKLDISDCNLGEGA-IPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQ-RLQ-SLPQL---P 76 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~-iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~-~l~-~lP~l---p 76 (341)
+.++++|+.|+|++|.+. +. +|..++.+++|+.|+|++|.+. ..|..++.+++|+.|+|++|. +.+ .+|.. .
T Consensus 89 ~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIE-VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CCCCBCCCEEECTTCEEC-HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred hccCCCCCEEEccCCCcC-HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 445566666666666654 33 5555666666666666666665 455566666666666666663 322 12221 2
Q ss_pred ccccccccccccccC
Q 039899 77 SNIEQVQVNGCASLG 91 (341)
Q Consensus 77 ~sL~~L~~~~c~sL~ 91 (341)
++|+.|++.+|..+.
T Consensus 168 ~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 168 SRLDELNLSWCFDFT 182 (336)
T ss_dssp TTCCEEECCCCTTCC
T ss_pred CCCCEEcCCCCCCcC
Confidence 355566665554443
No 126
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=5.1e-07 Score=84.98 Aligned_cols=66 Identities=26% Similarity=0.111 Sum_probs=58.3
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCcccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRL 69 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l 69 (341)
+|.+|++|+.|+|++|+|. +..|..|+.|++|+.|+|++|.|+.+|..+.....|+.|+|.+|++.
T Consensus 51 ~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 51 DLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp GSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred HhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 4889999999999999998 76677899999999999999999999986655555999999999875
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.33 E-value=2.8e-07 Score=86.02 Aligned_cols=84 Identities=14% Similarity=0.288 Sum_probs=50.1
Q ss_pred CCCCCCcEEeccCC-CCCCCCCCccccCCC-CCcEEEccCC--CCC--CCChhccCCCCccEEEcCCccc-cccCC-CC-
Q 039899 5 LGLCSLTKLDISDC-NLGEGAIPSDIGNIC-SLKELYLSKN--RFF--SLPASINLLSKLWIIELEECQR-LQSLP-QL- 75 (341)
Q Consensus 5 ~~L~~L~~LdLs~~-~l~eg~iP~~i~~L~-~L~~L~Ls~N--~~~--~LP~si~~Ls~L~~L~Ls~c~~-l~~lP-~l- 75 (341)
.++++|+.|+|++| .+....+|..++.++ +|+.|+|++| .++ .+|..+..+++|+.|++++|.. ....+ .+
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 34667777777777 665212555566677 7777777777 343 5666666677777777777763 22222 11
Q ss_pred -Ccccccccccccc
Q 039899 76 -PSNIEQVQVNGCA 88 (341)
Q Consensus 76 -p~sL~~L~~~~c~ 88 (341)
.++|+.|++++|.
T Consensus 245 ~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 245 QLNYLQHLSLSRCY 258 (336)
T ss_dssp GCTTCCEEECTTCT
T ss_pred CCCCCCEeeCCCCC
Confidence 2456666666654
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.26 E-value=5.6e-07 Score=85.25 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=26.3
Q ss_pred CCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCC-CCCh-hccCCCCccE
Q 039899 8 CSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFF-SLPA-SINLLSKLWI 60 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~-~LP~-si~~Ls~L~~ 60 (341)
++++.|+|++|+|.. ||. .+.++++|+.|+|++|.+. .+|. .+.+|++|..
T Consensus 30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 345566666666542 543 3555666666666665543 3443 3444544443
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.23 E-value=4.8e-08 Score=85.04 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=79.4
Q ss_pred CCCCCcEEeccCCCCCCCCCCc------cccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC---
Q 039899 6 GLCSLTKLDISDCNLGEGAIPS------DIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP--- 76 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~------~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp--- 76 (341)
....++.++++.+.+. |.+|. .++.+++|+.|+|++|.++.+| .+..+++|+.|++++|++. .+|...
T Consensus 16 ~~~~l~~l~l~~~~l~-~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECC-BCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEec-cccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 3456777888888887 77776 8999999999999999999999 9999999999999999885 677542
Q ss_pred ccccccccccccccCcchhhhHHHHhhchhccCCCCccc
Q 039899 77 SNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLS 115 (341)
Q Consensus 77 ~sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~ 115 (341)
++|+.|+++++ .+..++. ... ...++.+++++|.+.
T Consensus 93 ~~L~~L~L~~N-~l~~l~~-~~~-l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 93 DTLEELWISYN-QIASLSG-IEK-LVNLRVLYMSNNKIT 128 (198)
T ss_dssp HHCSEEEEEEE-ECCCHHH-HHH-HHHSSEEEESEEECC
T ss_pred CcCCEEECcCC-cCCcCCc-ccc-CCCCCEEECCCCcCC
Confidence 57888888776 4454431 111 234677777777765
No 130
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=1.5e-06 Score=80.08 Aligned_cols=66 Identities=23% Similarity=0.190 Sum_probs=55.0
Q ss_pred CCCCCcEEeccCCCCCCC--CCCccccCCCCCcEEEccCCCCCCCChhccCCC--CccEEEcCCccccccCC
Q 039899 6 GLCSLTKLDISDCNLGEG--AIPSDIGNICSLKELYLSKNRFFSLPASINLLS--KLWIIELEECQRLQSLP 73 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg--~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls--~L~~L~Ls~c~~l~~lP 73 (341)
++++|+.|+|++|++. + .+|..++.+++|+.|+|++|.|..+. .+..+. +|+.|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~-~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCC-CCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCC-CCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 4788999999999997 5 45677788999999999999999773 455555 89999999999887665
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.12 E-value=9.6e-07 Score=84.44 Aligned_cols=66 Identities=21% Similarity=0.133 Sum_probs=40.5
Q ss_pred CCCCCCCcEEeccCCCCCC--CCCCccc-------cCCCCCcEEEccCCCCCC-----CChhccCCCCccEEEcCCcccc
Q 039899 4 LLGLCSLTKLDISDCNLGE--GAIPSDI-------GNICSLKELYLSKNRFFS-----LPASINLLSKLWIIELEECQRL 69 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~e--g~iP~~i-------~~L~~L~~L~Ls~N~~~~-----LP~si~~Ls~L~~L~Ls~c~~l 69 (341)
+..+++|+.|+|++|.+.. +.+|..+ ..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.+.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 4456667777776653320 3344443 566677777777776664 5666666777777777777653
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.10 E-value=3.6e-07 Score=87.41 Aligned_cols=108 Identities=12% Similarity=0.143 Sum_probs=74.8
Q ss_pred CCCcEEeccCCCCCCCCCC---ccccCCCCCcEEEccCCCCC------CCChhccCCCCccEEEcCCcccc----ccCCC
Q 039899 8 CSLTKLDISDCNLGEGAIP---SDIGNICSLKELYLSKNRFF------SLPASINLLSKLWIIELEECQRL----QSLPQ 74 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP---~~i~~L~~L~~L~Ls~N~~~------~LP~si~~Ls~L~~L~Ls~c~~l----~~lP~ 74 (341)
++|+.|+|++|.+..+.+| ..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.+. +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 7888999999988644455 46777888999999999888 34447888888999999988874 44442
Q ss_pred ---CCccccccccccccccCcch--hhhHHH----HhhchhccCCCCcccc
Q 039899 75 ---LPSNIEQVQVNGCASLGTLS--HALKLC----KSIDVEVSKPIPHLSI 116 (341)
Q Consensus 75 ---lp~sL~~L~~~~c~sL~~l~--~~p~~l----~~~l~~l~l~~n~~~~ 116 (341)
-.++|+.|++++|. +.... .++..+ ...++.+++++|.+..
T Consensus 239 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 12467778877764 33221 234444 2337778888888764
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.09 E-value=5.2e-07 Score=85.81 Aligned_cols=80 Identities=19% Similarity=0.114 Sum_probs=53.7
Q ss_pred CCCcEEeccCCCCCCCCCC----ccccCCC-CCcEEEccCCCCCCC-ChhccCC-----CCccEEEcCCccccccCC---
Q 039899 8 CSLTKLDISDCNLGEGAIP----SDIGNIC-SLKELYLSKNRFFSL-PASINLL-----SKLWIIELEECQRLQSLP--- 73 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP----~~i~~L~-~L~~L~Ls~N~~~~L-P~si~~L-----s~L~~L~Ls~c~~l~~lP--- 73 (341)
++|+.|+|++|.+. +.-+ ..+..++ +|+.|+|++|.+... +..+..+ ++|+.|+|++|++.+..+
T Consensus 22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 44888888888876 3223 5567777 788888888888743 4556554 788888888887654332
Q ss_pred -----CCCcccccccccccc
Q 039899 74 -----QLPSNIEQVQVNGCA 88 (341)
Q Consensus 74 -----~lp~sL~~L~~~~c~ 88 (341)
..|++|+.|+++++.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHhCCCCccEEECcCCc
Confidence 223677777776653
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.98 E-value=1.4e-06 Score=82.86 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCCC-CCcEEeccCCCCCCCCCCccccCC-----CCCcEEEccCCCCCCCC-hh----ccCC-CCccEEEcCCccccccC
Q 039899 5 LGLC-SLTKLDISDCNLGEGAIPSDIGNI-----CSLKELYLSKNRFFSLP-AS----INLL-SKLWIIELEECQRLQSL 72 (341)
Q Consensus 5 ~~L~-~L~~LdLs~~~l~eg~iP~~i~~L-----~~L~~L~Ls~N~~~~LP-~s----i~~L-s~L~~L~Ls~c~~l~~l 72 (341)
.+++ +|+.|+|++|.+. +..+..+..+ ++|+.|+|++|.++..+ .. +..+ ++|+.|+|++|++....
T Consensus 47 ~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 3556 7888889888886 5556566554 88888999888888444 33 4444 78888888888875432
Q ss_pred CC--------CCccccccccccccccCc--chhhhHHHH---hhchhccCCCCcccc
Q 039899 73 PQ--------LPSNIEQVQVNGCASLGT--LSHALKLCK---SIDVEVSKPIPHLSI 116 (341)
Q Consensus 73 P~--------lp~sL~~L~~~~c~sL~~--l~~~p~~l~---~~l~~l~l~~n~~~~ 116 (341)
+. +|.+|+.|+++++. +.. ...++..+. ..++.+++++|.++.
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 21 15688888887762 221 112333333 257788888888764
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.95 E-value=8.8e-06 Score=76.96 Aligned_cols=88 Identities=25% Similarity=0.281 Sum_probs=64.6
Q ss_pred CCCCC-CCcEEeccCCCCCCCCCCccccCCCCCcEEEccC-CCCCCCCh-hccCCCCccEEEcCCccccccCCC-CCccc
Q 039899 4 LLGLC-SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSK-NRFFSLPA-SINLLSKLWIIELEECQRLQSLPQ-LPSNI 79 (341)
Q Consensus 4 l~~L~-~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~-N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~-lp~sL 79 (341)
+..+. .++.|+|++|++.+ +|..+...++|+.|++++ |.++.||. .+..+++|+.|+|++|++. .+|. ...+|
T Consensus 149 f~~~~~~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L 225 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENL 225 (350)
T ss_dssp STTSBSSCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTC
T ss_pred hhhcchhhhhhccccccccC--CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccc
Confidence 34443 57788888888864 887777778888888874 67778886 4688888888888888764 5553 56677
Q ss_pred cccccccccccCcch
Q 039899 80 EQVQVNGCASLGTLS 94 (341)
Q Consensus 80 ~~L~~~~c~sL~~l~ 94 (341)
+.|.+.++..|+.++
T Consensus 226 ~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 226 KKLRARSTYNLKKLP 240 (350)
T ss_dssp CEEECTTCTTCCCCC
T ss_pred hHhhhccCCCcCcCC
Confidence 777777777666665
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.59 E-value=1.6e-05 Score=77.17 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=32.8
Q ss_pred CCCCCcEEeccCCCCCCCCCCccc-cCCC----CCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccc
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDI-GNIC----SLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRL 69 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i-~~L~----~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l 69 (341)
.+++|++|+|++|.+. +..+..+ ..++ +|+.|+|++|.+. .+|..+..+++|+.|+|++|++.
T Consensus 54 ~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 54 VNPALAELNLRSNELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp TCTTCCEEECTTCCCH-HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred hCCCcCEEeCCCCcCC-hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 3455666666665554 2112121 2233 4666666666655 34555666666666666666543
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.27 E-value=3.4e-05 Score=74.82 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=59.9
Q ss_pred CCCCcEEeccCCCCCCCC----CCccccCCCCCcEEEccCCCCCCC-ChhccC-----CCCccEEEcCCccccc----cC
Q 039899 7 LCSLTKLDISDCNLGEGA----IPSDIGNICSLKELYLSKNRFFSL-PASINL-----LSKLWIIELEECQRLQ----SL 72 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~----iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~-----Ls~L~~L~Ls~c~~l~----~l 72 (341)
.++|+.|+|++|.+. +. +|..+..+++|+.|+|++|.+... +..+.. .++|+.|+|++|++.. .+
T Consensus 312 ~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 390 (461)
T 1z7x_W 312 GCQLESLWVKSCSFT-AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390 (461)
T ss_dssp TCCCCEEECTTSCCB-GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CccceeeEcCCCCCc-hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHH
Confidence 368999999999987 43 566777889999999999988833 333332 6799999999998864 44
Q ss_pred CCC---Cccccccccccc
Q 039899 73 PQL---PSNIEQVQVNGC 87 (341)
Q Consensus 73 P~l---p~sL~~L~~~~c 87 (341)
|.. .++|+.|+++++
T Consensus 391 ~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 391 AATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHCCCCCEEECCSS
T ss_pred HHHHHhCCCccEEECCCC
Confidence 432 357788888776
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.23 E-value=5.7e-05 Score=72.50 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=32.9
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-----hhc-cCCCCccEEEcCCccc
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-----ASI-NLLSKLWIIELEECQR 68 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-----~si-~~Ls~L~~L~Ls~c~~ 68 (341)
++|+.|+|++|.+.+..+..-...+++|+.|+|++|.+...+ ..+ ...++|+.|+|++|.+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l 167 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL 167 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCC
Confidence 567777777777652111111223456677777777665221 112 2345666777776665
No 139
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.13 E-value=0.00033 Score=60.34 Aligned_cols=83 Identities=12% Similarity=0.244 Sum_probs=58.5
Q ss_pred CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCC-CC--CCChhccCC----CCccEEEcCCcccccc-----CCCC
Q 039899 8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNR-FF--SLPASINLL----SKLWIIELEECQRLQS-----LPQL 75 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~-~~--~LP~si~~L----s~L~~L~Ls~c~~l~~-----lP~l 75 (341)
..|+.|||++|.+++..+ ..+..+++|+.|+|++|. ++ .+ ..|..+ ++|+.|+|++|..... |-.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 468999999999874333 456889999999999985 65 12 234443 3699999999974331 2223
Q ss_pred CccccccccccccccCcc
Q 039899 76 PSNIEQVQVNGCASLGTL 93 (341)
Q Consensus 76 p~sL~~L~~~~c~sL~~l 93 (341)
++|+.|++++|+.++..
T Consensus 139 -~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 139 -RNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -TTCCEEEEESCTTCCCH
T ss_pred -CCCCEEECCCCCCCCch
Confidence 67888888888877654
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.91 E-value=0.00023 Score=71.13 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=55.8
Q ss_pred CCCCCcEEeccCCCCCCCCCCcccc-CCCCCcEEEccCC-CCCC--CChhccCCCCccEEEcCCccccc-------cCCC
Q 039899 6 GLCSLTKLDISDCNLGEGAIPSDIG-NICSLKELYLSKN-RFFS--LPASINLLSKLWIIELEECQRLQ-------SLPQ 74 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~iP~~i~-~L~~L~~L~Ls~N-~~~~--LP~si~~Ls~L~~L~Ls~c~~l~-------~lP~ 74 (341)
.+++|+.|+|++|.+. +..+..+. .+++|+.|+|++| .+.. ++..+.++++|+.|+|++|.+.. .++.
T Consensus 103 ~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVT-DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCC-HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEc-HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3567888888888876 55555554 5788888888888 5553 66556678888888888887433 1222
Q ss_pred CCcccccccccccc
Q 039899 75 LPSNIEQVQVNGCA 88 (341)
Q Consensus 75 lp~sL~~L~~~~c~ 88 (341)
..++|+.|++.+|.
T Consensus 182 ~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 182 TYTSLVSLNISCLA 195 (594)
T ss_dssp TCCCCCEEECTTCC
T ss_pred cCCcCcEEEecccC
Confidence 23467777776664
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.89 E-value=0.00019 Score=71.81 Aligned_cols=82 Identities=16% Similarity=0.069 Sum_probs=60.4
Q ss_pred CCCCCcEEeccCCC--CCCCCCCcccc-CCCCCcEEEccCCCCC--CCChhccCCCCccEEEcCCcccccc-CCCC---C
Q 039899 6 GLCSLTKLDISDCN--LGEGAIPSDIG-NICSLKELYLSKNRFF--SLPASINLLSKLWIIELEECQRLQS-LPQL---P 76 (341)
Q Consensus 6 ~L~~L~~LdLs~~~--l~eg~iP~~i~-~L~~L~~L~Ls~N~~~--~LP~si~~Ls~L~~L~Ls~c~~l~~-lP~l---p 76 (341)
++++|+.|+|++|+ ++ +..+..++ .+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+... ++.+ .
T Consensus 434 ~~~~L~~L~L~~~~~~l~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 512 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLT-DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512 (592)
T ss_dssp HCTTCCEEEEECCGGGCC-HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred hCCCCCEEEEecCCCCcc-HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence 47889999998765 55 33444443 4788999999999987 5676778889999999999985432 2322 3
Q ss_pred cccccccccccc
Q 039899 77 SNIEQVQVNGCA 88 (341)
Q Consensus 77 ~sL~~L~~~~c~ 88 (341)
++|+.|++++|.
T Consensus 513 ~~L~~L~ls~n~ 524 (592)
T 3ogk_B 513 PSLRYLWVQGYR 524 (592)
T ss_dssp SSCCEEEEESCB
T ss_pred CccCeeECcCCc
Confidence 578888888886
No 142
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.87 E-value=0.002 Score=52.32 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=46.7
Q ss_pred cEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccc
Q 039899 11 TKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRL 69 (341)
Q Consensus 11 ~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l 69 (341)
..++.++++++...+|..+. ++|+.|+|++|.|+.||. .+..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 57889999986124897543 579999999999999987 4688999999999999763
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.81 E-value=0.00013 Score=70.01 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=73.6
Q ss_pred CCCCcEEeccCCCCCCCCCCccc-----cCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccccc----C
Q 039899 7 LCSLTKLDISDCNLGEGAIPSDI-----GNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRLQS----L 72 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~~i-----~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l~~----l 72 (341)
+++|+.|+|++|.+.+ .-...+ ...++|+.|+|++|.|+ .++..+..+++|+.|+|++|.+... +
T Consensus 125 L~~L~~L~Ls~n~l~~-~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 125 FLRARKLGLQLNSLGP-EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp HHTEEEEECCSSCCCH-HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred HHhccHhhcCCCCCCH-HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence 5679999999999962 222222 34678999999999987 3666778899999999999987531 1
Q ss_pred C---CCCccccccccccccccCcch--hhhHHHH--hhchhccCCCCccc
Q 039899 73 P---QLPSNIEQVQVNGCASLGTLS--HALKLCK--SIDVEVSKPIPHLS 115 (341)
Q Consensus 73 P---~lp~sL~~L~~~~c~sL~~l~--~~p~~l~--~~l~~l~l~~n~~~ 115 (341)
+ .-+++|+.|++++|. +.... .+...+. ..++.+++++|.++
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1 123578889988763 33221 2233332 23788999999876
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.77 E-value=0.00034 Score=69.91 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=43.3
Q ss_pred CCCCCcEEeccCCCCCCCC----CCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccc
Q 039899 6 GLCSLTKLDISDCNLGEGA----IPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRL 69 (341)
Q Consensus 6 ~L~~L~~LdLs~~~l~eg~----iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l 69 (341)
++++|++|+|++|.+. +. ++..+..+++|+.|+|++|.+. .++..+.++++|+.|++++|...
T Consensus 162 ~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFS-EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HCTTCSEEECTTCEEE-CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred hCCCCCEEECcccccc-CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 4678888888888875 33 3334556777888888877775 34445566777788887777654
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.33 E-value=0.0034 Score=58.31 Aligned_cols=56 Identities=25% Similarity=0.308 Sum_probs=43.2
Q ss_pred CCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCcc-EEEcCC
Q 039899 7 LCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLW-IIELEE 65 (341)
Q Consensus 7 L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~-~L~Ls~ 65 (341)
+++|+.|+|++|++.. ||. .+.++++|+.|+|.+| ++.||. .+.++++|+ .|.+.+
T Consensus 225 ~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 5778888888888753 765 4777888888888877 777765 678888888 888876
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.30 E-value=0.0046 Score=57.45 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=61.5
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCc-EEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCCCCCccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLK-ELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLPQLPSNI 79 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~-~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL 79 (341)
+|.++.+|+.|+|++| +. .|+. .|.++++|+ .|+|.. +++.|+ ..+.++++|+.|++++|++. . ++...
T Consensus 245 aF~~~~~L~~l~l~~n-i~--~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~---I~~~a 316 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LK--TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-T---LGDEL 316 (329)
T ss_dssp TTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-E---ECTTT
T ss_pred hhhCCCCCCEEECCcc-cc--eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-c---cchhh
Confidence 4788999999999997 64 3764 588999999 999998 788776 58999999999999888764 2 33322
Q ss_pred cccccccccccCcc
Q 039899 80 EQVQVNGCASLGTL 93 (341)
Q Consensus 80 ~~L~~~~c~sL~~l 93 (341)
- .+|++|+.+
T Consensus 317 F----~~~~~L~~l 326 (329)
T 3sb4_A 317 F----GNGVPSKLI 326 (329)
T ss_dssp T----CTTCCCCEE
T ss_pred h----cCCcchhhh
Confidence 1 567777654
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.07 E-value=0.00056 Score=68.27 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=63.9
Q ss_pred CCCCCcEEecc--C----CCCCCCCCCc------cccCCCCCcEEEccCCCCC-CCChhccC-CCCccEEEcCCcccccc
Q 039899 6 GLCSLTKLDIS--D----CNLGEGAIPS------DIGNICSLKELYLSKNRFF-SLPASINL-LSKLWIIELEECQRLQS 71 (341)
Q Consensus 6 ~L~~L~~LdLs--~----~~l~eg~iP~------~i~~L~~L~~L~Ls~N~~~-~LP~si~~-Ls~L~~L~Ls~c~~l~~ 71 (341)
.+++|+.|+|+ + ++++ ..|. -+..+++|+.|+|++ .++ ..+..+.. +++|+.|+|++|.+...
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~--~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLT--LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTT--CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred hCCCcceeEeecccCCCccccc--CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence 47889999998 3 4443 2332 256778899999977 555 33345554 78899999998886432
Q ss_pred CC-CC---CccccccccccccccCcchhhhHHH--HhhchhccCCCCcc
Q 039899 72 LP-QL---PSNIEQVQVNGCASLGTLSHALKLC--KSIDVEVSKPIPHL 114 (341)
Q Consensus 72 lP-~l---p~sL~~L~~~~c~sL~~l~~~p~~l--~~~l~~l~l~~n~~ 114 (341)
.+ .+ .++|+.|++++|.- .. ..+.... ...++.+++++|.+
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~-~~-~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPF-GD-KALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSC-CH-HHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhcCCCcCEEECcCCCC-cH-HHHHHHHHhCCCCCEEeeeCCCC
Confidence 11 11 35788888887753 11 1111111 13467777777765
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.00 E-value=0.0048 Score=56.54 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=35.4
Q ss_pred cCCCCCcEEEccCCCCCCCC---hhccCCCCccEEEcCCccccc
Q 039899 30 GNICSLKELYLSKNRFFSLP---ASINLLSKLWIIELEECQRLQ 70 (341)
Q Consensus 30 ~~L~~L~~L~Ls~N~~~~LP---~si~~Ls~L~~L~Ls~c~~l~ 70 (341)
.++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|++.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 46889999999999999654 667899999999999999853
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.82 E-value=0.0028 Score=54.25 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=70.1
Q ss_pred CCCCCCCcEEeccCC-CCCCC---CCCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccccc---
Q 039899 4 LLGLCSLTKLDISDC-NLGEG---AIPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRLQS--- 71 (341)
Q Consensus 4 l~~L~~L~~LdLs~~-~l~eg---~iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l~~--- 71 (341)
+...++|+.|+|++| .+.+. .+...+...++|+.|+|++|.|. .+...+...+.|+.|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345678999999999 88521 13445677789999999999987 3556677778999999999987531
Q ss_pred -CCC-C--Ccccccccc--ccccccCcch--hhhHHHH--hhchhccCCCCccc
Q 039899 72 -LPQ-L--PSNIEQVQV--NGCASLGTLS--HALKLCK--SIDVEVSKPIPHLS 115 (341)
Q Consensus 72 -lP~-l--p~sL~~L~~--~~c~sL~~l~--~~p~~l~--~~l~~l~l~~n~~~ 115 (341)
|.. + -.+|+.|++ .++ .+..-. .+...+. ..++.++++.|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 111 1 235677776 322 222111 1222222 23667777777664
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.72 E-value=0.0031 Score=54.03 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=59.3
Q ss_pred CCCCCCcEEeccCCCCCCC---CCCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEc--CCcccccc---
Q 039899 5 LGLCSLTKLDISDCNLGEG---AIPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIEL--EECQRLQS--- 71 (341)
Q Consensus 5 ~~L~~L~~LdLs~~~l~eg---~iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~L--s~c~~l~~--- 71 (341)
...++|++|+|++|.+.+. .+...+...++|+.|+|++|.|. .+...+...+.|+.|+| ++|.+...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 4467899999999999621 13445666788999999999998 36677888899999999 77877431
Q ss_pred -CCCC---Cccccccccccc
Q 039899 72 -LPQL---PSNIEQVQVNGC 87 (341)
Q Consensus 72 -lP~l---p~sL~~L~~~~c 87 (341)
+.+. -++|+.|+++++
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCcCEEeccCC
Confidence 1110 145666666554
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.70 E-value=0.0014 Score=56.34 Aligned_cols=66 Identities=12% Similarity=0.266 Sum_probs=49.3
Q ss_pred CCCCCCCCcEEeccCCC-CCCCCCCccccCC----CCCcEEEccCCC-CC--CCChhccCCCCccEEEcCCccccc
Q 039899 3 SLLGLCSLTKLDISDCN-LGEGAIPSDIGNI----CSLKELYLSKNR-FF--SLPASINLLSKLWIIELEECQRLQ 70 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~-l~eg~iP~~i~~L----~~L~~L~Ls~N~-~~--~LP~si~~Ls~L~~L~Ls~c~~l~ 70 (341)
.+.++++|+.|+|++|. +++ .--..++.+ ++|+.|+|++|. ++ .+ ..+.++++|+.|+|++|...+
T Consensus 80 ~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCC
Confidence 46789999999999996 552 112235554 369999999984 77 34 357789999999999997543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.26 E-value=0.0022 Score=61.30 Aligned_cols=81 Identities=14% Similarity=0.068 Sum_probs=52.7
Q ss_pred CCCCCcEEeccC--CCCCCCC-----CCccc--cCCCCCcEEEccCCCCC-CCChhc---cCCCCccEEEcCCcccccc-
Q 039899 6 GLCSLTKLDISD--CNLGEGA-----IPSDI--GNICSLKELYLSKNRFF-SLPASI---NLLSKLWIIELEECQRLQS- 71 (341)
Q Consensus 6 ~L~~L~~LdLs~--~~l~eg~-----iP~~i--~~L~~L~~L~Ls~N~~~-~LP~si---~~Ls~L~~L~Ls~c~~l~~- 71 (341)
.+++|+.|+|+. ++.. |. +...+ +.+++|+.|+|.+|.+. ..+..+ ..+++|+.|+|+.|.+...
T Consensus 217 ~lp~L~~L~L~~~~~~~~-~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYG-FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp BCTTCCEEEEECBCGGGT-CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred cCCCCcEEEEeccccccc-cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 689999999864 2211 11 11222 35789999999999887 233333 3578999999999987542
Q ss_pred ---CCCC---Cccccccccccc
Q 039899 72 ---LPQL---PSNIEQVQVNGC 87 (341)
Q Consensus 72 ---lP~l---p~sL~~L~~~~c 87 (341)
++.- .++|+.|++++|
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHhhcccCCcceEEECCCC
Confidence 2221 246777777665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.65 E-value=0.025 Score=53.87 Aligned_cols=14 Identities=7% Similarity=-0.239 Sum_probs=9.5
Q ss_pred hchhccCCCCcccc
Q 039899 103 IDVEVSKPIPHLSI 116 (341)
Q Consensus 103 ~l~~l~l~~n~~~~ 116 (341)
.++.|+++.|.+..
T Consensus 280 ~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 280 QLETMDISAGVLTD 293 (362)
T ss_dssp GCSEEECCSSCCBH
T ss_pred CCCEEECCCCCCCh
Confidence 46777787777653
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.70 E-value=0.099 Score=50.24 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=36.2
Q ss_pred CCCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCC
Q 039899 8 CSLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEE 65 (341)
Q Consensus 8 ~~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~ 65 (341)
++|+.+.|.. ++. .|+ ..+.++++|+.++|++|+++.||...-..++|+.+.|..
T Consensus 157 ~~L~~i~lp~-~l~--~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 157 STVQEIVFPS-TLE--QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCCCEEECCT-TCC--EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CCceEEEeCC-Ccc--EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 3577777765 443 244 456777778888887777777776544467777777753
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.46 E-value=0.073 Score=42.90 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCC
Q 039899 9 SLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFF 46 (341)
Q Consensus 9 ~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~ 46 (341)
+|+.|+|++|+|+. +|.. +..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTA--LPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSS--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCc--cChhhhhhccccCEEEecCCCee
Confidence 69999999999974 7754 688999999999999876
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.30 E-value=0.41 Score=44.77 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=44.0
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCC
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEE 65 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~ 65 (341)
+.+..+|+.+.+..+ +. .++. .+..+++|+.+.+.++.++.|+. .+.++.+|+.+.|..
T Consensus 259 F~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred cceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 456677888888654 32 2554 46778899999999888888875 688888999888753
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=88.78 E-value=0.7 Score=44.24 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=45.3
Q ss_pred CCCCCCCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCcccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRL 69 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l 69 (341)
|.+ ++|+.+.|..+ +. .|+.. +.+ .+|+.+.|.. +++.|+ ..+.++.+|+.++|.+|++.
T Consensus 132 F~~-~~L~~i~l~~~-i~--~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 132 FRN-SQIAKVVLNEG-LK--SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT 193 (401)
T ss_dssp TTT-CCCSEEECCTT-CC--EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS
T ss_pred ccc-CCccEEEeCCC-cc--EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce
Confidence 445 47999998776 53 36543 444 5799999986 788777 47899999999999988663
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.10 E-value=0.79 Score=43.24 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=36.8
Q ss_pred CCCCCCCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCC
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEE 65 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~ 65 (341)
|.+..+|+.+.+...... ++ ..+.+.++|+.+.+. +.++.|+. .+.++.+|+.+.|..
T Consensus 261 F~~c~~L~~i~lp~~~~~---I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS---IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTTCSSCCEEECCTTCCE---ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred eeecccccEEecccccce---ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence 455666777776554432 33 345667778888875 45666664 567777888777653
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.41 E-value=0.84 Score=42.56 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=45.0
Q ss_pred CCCCCCCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccc
Q 039899 4 LLGLCSLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQR 68 (341)
Q Consensus 4 l~~L~~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~ 68 (341)
+.+...|+.+.+..+ +. .|+ ..+.+..+|+.+.+.. ++..++. .+.++++|+.+.+.++..
T Consensus 236 f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i 298 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAI 298 (379)
T ss_dssp TTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTC
T ss_pred ccCCccceEEEcCCC-cc--EeCccccceeehhccccccc-cceecccccccccccccccccccccc
Confidence 556778888888765 43 254 3467788999999965 4777765 678899999999987654
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.18 E-value=0.34 Score=42.09 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCCCCcEEeccCC-CCCCC---CCCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccccc----C
Q 039899 6 GLCSLTKLDISDC-NLGEG---AIPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRLQS----L 72 (341)
Q Consensus 6 ~L~~L~~LdLs~~-~l~eg---~iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l~~----l 72 (341)
+-+.|+.|+|+++ .+.+. .+-..+..=+.|+.|+|++|.|. .|-..+..=+.|+.|+|++|.+... |
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3467999999986 66310 12344666678999999999988 4555666678899999999987431 0
Q ss_pred ---CCCCccccccccccc
Q 039899 73 ---PQLPSNIEQVQVNGC 87 (341)
Q Consensus 73 ---P~lp~sL~~L~~~~c 87 (341)
-.....|+.|+++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 012345777777654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.13 E-value=0.24 Score=43.07 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=45.6
Q ss_pred CCCCcEEeccCCCCCC---CCCCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcc
Q 039899 7 LCSLTKLDISDCNLGE---GAIPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQ 67 (341)
Q Consensus 7 L~~L~~LdLs~~~l~e---g~iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~ 67 (341)
=+.|+.|+|++|.+.+ ..|-..+..=+.|+.|+|++|.|. .|-..+..=+.|+.|+|++|.
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 3679999999999962 123344555678999999999998 344456666779999998764
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=79.23 E-value=2.7 Score=39.42 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=16.5
Q ss_pred ccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEc
Q 039899 29 IGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIEL 63 (341)
Q Consensus 29 i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~L 63 (341)
+...++|+.+.+..+ ++.|+. .+.++++|+.+.|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~l 327 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDL 327 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEe
Confidence 344555555555432 444432 3445555555544
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=73.16 E-value=3.4 Score=38.74 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=52.2
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCCCcccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQLPSNIE 80 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~ 80 (341)
++..+.+|+.+.+..+ +. .|+ ..+.+.++|+.++|.. +++.|+. .+.++++|+.+.+..+ +..|+. .-
T Consensus 292 ~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~---~a- 361 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGA---NA- 361 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECT---TT-
T ss_pred cccccccccccccccc-cc--eechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehH---HH-
Confidence 3567788999988764 43 254 3577889999999964 4777764 7888888988877644 222321 11
Q ss_pred ccccccccccCcc
Q 039899 81 QVQVNGCASLGTL 93 (341)
Q Consensus 81 ~L~~~~c~sL~~l 93 (341)
..+|++|+.+
T Consensus 362 ---F~~C~~L~~i 371 (394)
T 4fs7_A 362 ---FQGCINLKKV 371 (394)
T ss_dssp ---BTTCTTCCEE
T ss_pred ---hhCCCCCCEE
Confidence 2577777766
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=70.94 E-value=6.9 Score=36.57 Aligned_cols=79 Identities=15% Similarity=0.340 Sum_probs=52.7
Q ss_pred CCCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCCCcccc
Q 039899 3 SLLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQLPSNIE 80 (341)
Q Consensus 3 sl~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~ 80 (341)
++.++.+|+.+.+.. .+.. |+. .+.+.++|+.+.|..+ ++.|+. .+.++++|+.+.+..+ ...|+ ..
T Consensus 283 aF~~c~~L~~i~l~~-~i~~--I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~---~~-- 351 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITE--LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIP---ES-- 351 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCC---GG--
T ss_pred ccccccccccccCCC-cccc--cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEh---Hh--
Confidence 356778899999863 4432 654 4777899999999754 777764 6888899998877543 22222 11
Q ss_pred ccccccccccCcch
Q 039899 81 QVQVNGCASLGTLS 94 (341)
Q Consensus 81 ~L~~~~c~sL~~l~ 94 (341)
-..+|++|+.+.
T Consensus 352 --aF~~C~~L~~i~ 363 (394)
T 4gt6_A 352 --AFSNCTALNNIE 363 (394)
T ss_dssp --GGTTCTTCCEEE
T ss_pred --HhhCCCCCCEEE
Confidence 125788887764
Done!