Query 039903
Match_columns 233
No_of_seqs 137 out of 1160
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 04:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 3.3E-44 1.1E-48 311.4 16.2 223 2-233 14-251 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 1.8E-41 6.2E-46 295.3 20.0 232 1-233 25-266 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 2.6E-41 9E-46 294.7 19.3 233 1-233 26-268 (368)
4 3i53_A O-methyltransferase; CO 100.0 2.3E-39 7.9E-44 278.4 15.9 219 1-233 10-242 (332)
5 3lst_A CALO1 methyltransferase 100.0 3.5E-39 1.2E-43 279.1 16.5 217 2-233 28-254 (348)
6 3gwz_A MMCR; methyltransferase 100.0 5.4E-39 1.9E-43 280.1 13.7 218 2-233 44-275 (369)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 6.6E-38 2.3E-42 272.0 17.5 227 2-233 16-258 (358)
8 2ip2_A Probable phenazine-spec 100.0 7.3E-38 2.5E-42 269.0 16.0 215 2-233 14-240 (334)
9 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.3E-37 4.4E-42 271.6 17.1 230 2-233 30-274 (372)
10 1fp2_A Isoflavone O-methyltran 100.0 1.6E-37 5.5E-42 269.0 17.1 225 2-233 22-253 (352)
11 3dp7_A SAM-dependent methyltra 100.0 8.5E-36 2.9E-40 259.4 14.5 214 2-233 21-255 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 2E-35 6.8E-40 257.4 16.7 217 2-232 22-254 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 7.9E-35 2.7E-39 252.5 16.6 217 2-232 25-255 (360)
14 1x19_A CRTF-related protein; m 100.0 1.3E-33 4.3E-38 245.1 17.3 204 5-232 40-262 (359)
15 2r3s_A Uncharacterized protein 100.0 2E-33 6.9E-38 241.1 16.5 210 2-232 12-238 (335)
16 3mcz_A O-methyltransferase; ad 100.0 7E-33 2.4E-37 239.6 15.7 209 2-233 30-255 (352)
17 2qm3_A Predicted methyltransfe 99.5 6.6E-13 2.3E-17 115.4 13.0 178 20-232 47-247 (373)
18 1ve3_A Hypothetical protein PH 98.7 1.1E-08 3.8E-13 81.7 5.5 64 167-232 37-109 (227)
19 4gek_A TRNA (CMO5U34)-methyltr 98.7 5E-08 1.7E-12 80.6 8.9 66 167-232 69-145 (261)
20 3dtn_A Putative methyltransfer 98.6 1.3E-07 4.6E-12 75.9 9.2 75 158-232 34-115 (234)
21 1yb2_A Hypothetical protein TA 98.6 8.7E-08 3E-12 79.4 6.9 74 158-232 101-185 (275)
22 3mb5_A SAM-dependent methyltra 98.6 4.4E-08 1.5E-12 79.9 4.8 75 157-232 83-168 (255)
23 3vc1_A Geranyl diphosphate 2-C 98.6 2.4E-07 8.2E-12 78.0 9.3 84 148-232 97-191 (312)
24 3kr9_A SAM-dependent methyltra 98.6 6.7E-08 2.3E-12 78.0 5.5 66 167-232 14-90 (225)
25 3e05_A Precorrin-6Y C5,15-meth 98.5 2.3E-07 7.7E-12 73.1 8.4 74 158-232 31-114 (204)
26 3dlc_A Putative S-adenosyl-L-m 98.5 8.9E-08 3E-12 75.7 6.0 73 157-232 34-117 (219)
27 1yzh_A TRNA (guanine-N(7)-)-me 98.5 1.9E-07 6.6E-12 74.2 7.8 65 168-232 41-117 (214)
28 3ege_A Putative methyltransfer 98.5 4.1E-07 1.4E-11 74.6 9.3 73 157-232 24-100 (261)
29 3dh0_A SAM dependent methyltra 98.5 2.1E-07 7.1E-12 73.9 6.7 75 157-232 27-112 (219)
30 3mq2_A 16S rRNA methyltransfer 98.5 4.7E-07 1.6E-11 72.0 8.6 71 160-231 20-103 (218)
31 1vl5_A Unknown conserved prote 98.5 2.6E-07 8.9E-12 75.5 7.1 76 154-232 24-109 (260)
32 3lec_A NADB-rossmann superfami 98.5 1.6E-07 5.5E-12 76.0 5.5 66 167-232 20-96 (230)
33 3bus_A REBM, methyltransferase 98.5 4.8E-07 1.7E-11 74.3 8.4 74 157-232 51-135 (273)
34 3f4k_A Putative methyltransfer 98.5 4.2E-07 1.4E-11 73.9 8.0 73 159-232 37-120 (257)
35 1jsx_A Glucose-inhibited divis 98.5 1.4E-07 4.9E-12 74.3 5.0 64 169-232 66-138 (207)
36 3ou2_A SAM-dependent methyltra 98.5 9.8E-07 3.4E-11 69.7 9.8 74 157-232 35-113 (218)
37 3ujc_A Phosphoethanolamine N-m 98.4 4.3E-07 1.5E-11 74.0 7.7 74 157-232 45-126 (266)
38 2fca_A TRNA (guanine-N(7)-)-me 98.4 3.2E-07 1.1E-11 73.2 6.6 65 168-232 38-114 (213)
39 3g5l_A Putative S-adenosylmeth 98.4 4.8E-07 1.7E-11 73.5 7.8 73 158-232 35-114 (253)
40 2o57_A Putative sarcosine dime 98.4 4.9E-07 1.7E-11 75.3 7.9 74 157-232 68-156 (297)
41 2qe6_A Uncharacterized protein 98.4 6.3E-07 2.2E-11 74.4 8.5 56 167-222 76-139 (274)
42 2p35_A Trans-aconitate 2-methy 98.4 4.2E-07 1.4E-11 73.9 7.3 73 158-232 24-101 (259)
43 3gnl_A Uncharacterized protein 98.4 2.1E-07 7.1E-12 75.9 5.3 66 167-232 20-96 (244)
44 3mgg_A Methyltransferase; NYSG 98.4 4.2E-07 1.4E-11 74.9 7.2 67 166-232 35-111 (276)
45 3kkz_A Uncharacterized protein 98.4 4.5E-07 1.6E-11 74.4 7.4 73 159-232 37-120 (267)
46 2pwy_A TRNA (adenine-N(1)-)-me 98.4 2.4E-07 8.3E-12 75.4 5.3 74 158-232 87-172 (258)
47 1nv8_A HEMK protein; class I a 98.4 3.9E-07 1.3E-11 76.0 6.5 64 168-232 123-198 (284)
48 1nkv_A Hypothetical protein YJ 98.4 8E-07 2.7E-11 72.2 8.2 74 157-232 26-109 (256)
49 3uwp_A Histone-lysine N-methyl 98.4 4.5E-07 1.5E-11 79.2 7.0 75 157-232 163-258 (438)
50 3g07_A 7SK snRNA methylphospha 98.4 7E-07 2.4E-11 74.6 7.9 43 167-209 45-88 (292)
51 3jwg_A HEN1, methyltransferase 98.4 4.5E-07 1.5E-11 72.1 6.4 66 167-232 28-108 (219)
52 3jwh_A HEN1; methyltransferase 98.4 5.4E-07 1.9E-11 71.6 6.8 73 159-232 21-108 (217)
53 2b3t_A Protein methyltransfera 98.4 6E-07 2.1E-11 74.3 7.3 66 167-232 108-182 (276)
54 3hm2_A Precorrin-6Y C5,15-meth 98.4 4E-07 1.4E-11 69.7 5.8 72 159-232 17-100 (178)
55 3g5t_A Trans-aconitate 3-methy 98.4 1.2E-06 4E-11 73.2 8.7 66 167-232 35-119 (299)
56 3gu3_A Methyltransferase; alph 98.4 5.9E-07 2E-11 74.6 6.7 67 166-232 20-95 (284)
57 4dzr_A Protein-(glutamine-N5) 98.4 1.2E-07 4.2E-12 74.6 2.3 75 158-232 20-107 (215)
58 3pfg_A N-methyltransferase; N, 98.4 9.4E-07 3.2E-11 72.3 7.7 64 167-232 49-116 (263)
59 3dxy_A TRNA (guanine-N(7)-)-me 98.4 5.1E-07 1.7E-11 72.4 5.9 65 168-232 34-111 (218)
60 4dcm_A Ribosomal RNA large sub 98.4 8.1E-07 2.8E-11 77.1 7.6 74 158-232 213-298 (375)
61 2yxd_A Probable cobalt-precorr 98.4 4.8E-07 1.6E-11 69.3 5.5 72 158-232 26-106 (183)
62 3b3j_A Histone-arginine methyl 98.4 1.9E-06 6.5E-11 77.1 10.1 74 157-232 148-230 (480)
63 3bkw_A MLL3908 protein, S-aden 98.3 1.3E-06 4.5E-11 70.2 8.2 73 158-232 34-113 (243)
64 3ntv_A MW1564 protein; rossman 98.3 4E-07 1.4E-11 73.5 5.2 67 166-232 69-148 (232)
65 4hg2_A Methyltransferase type 98.3 7.6E-07 2.6E-11 73.2 6.9 63 168-232 39-105 (257)
66 3q87_B N6 adenine specific DNA 98.3 1.2E-06 4.2E-11 67.2 7.2 59 168-232 23-84 (170)
67 1xxl_A YCGJ protein; structura 98.3 1.1E-06 3.8E-11 71.0 7.1 74 156-232 10-93 (239)
68 3ckk_A TRNA (guanine-N(7)-)-me 98.3 1.1E-06 3.6E-11 71.3 7.0 66 167-232 45-129 (235)
69 3gjy_A Spermidine synthase; AP 98.3 6.1E-07 2.1E-11 75.9 5.6 63 170-232 91-165 (317)
70 1xtp_A LMAJ004091AAA; SGPP, st 98.3 3.8E-07 1.3E-11 74.0 3.9 74 157-232 83-164 (254)
71 3dli_A Methyltransferase; PSI- 98.3 2.2E-06 7.7E-11 69.1 8.5 70 159-232 32-107 (240)
72 1o54_A SAM-dependent O-methylt 98.3 1.3E-06 4.3E-11 72.3 6.9 75 157-232 102-187 (277)
73 3hem_A Cyclopropane-fatty-acyl 98.3 1.7E-06 5.8E-11 72.3 7.8 73 157-232 62-143 (302)
74 1i9g_A Hypothetical protein RV 98.3 1.4E-06 4.7E-11 71.9 7.1 75 157-232 89-177 (280)
75 3ccf_A Cyclopropane-fatty-acyl 98.3 1.3E-06 4.4E-11 72.2 6.7 74 156-232 46-123 (279)
76 3cgg_A SAM-dependent methyltra 98.3 1.8E-06 6.3E-11 66.6 7.1 71 158-232 38-113 (195)
77 3njr_A Precorrin-6Y methylase; 98.3 2.5E-06 8.6E-11 67.5 7.9 71 159-232 47-128 (204)
78 3bxo_A N,N-dimethyltransferase 98.3 2.9E-06 1E-10 67.9 8.3 63 167-231 39-105 (239)
79 3q7e_A Protein arginine N-meth 98.3 1.5E-06 5.2E-11 74.5 7.0 65 167-232 65-139 (349)
80 1pjz_A Thiopurine S-methyltran 98.2 1.1E-06 3.6E-11 69.5 5.5 68 161-231 16-106 (203)
81 3hnr_A Probable methyltransfer 98.2 2E-06 6.7E-11 68.2 6.8 72 158-232 36-112 (220)
82 3bkx_A SAM-dependent methyltra 98.2 1.7E-06 5.8E-11 71.1 6.6 74 158-232 34-128 (275)
83 3ocj_A Putative exported prote 98.2 4.7E-07 1.6E-11 76.0 3.2 67 166-232 116-193 (305)
84 3g2m_A PCZA361.24; SAM-depende 98.2 1.5E-06 5E-11 72.6 6.1 73 156-232 72-156 (299)
85 2h00_A Methyltransferase 10 do 98.2 1.6E-06 5.4E-11 70.7 6.0 65 168-232 65-146 (254)
86 2yqz_A Hypothetical protein TT 98.2 3.6E-06 1.2E-10 68.4 8.1 65 166-232 37-110 (263)
87 2plw_A Ribosomal RNA methyltra 98.2 3.6E-06 1.2E-10 65.8 7.8 61 158-222 12-74 (201)
88 1jg1_A PIMT;, protein-L-isoasp 98.2 2.2E-06 7.6E-11 69.0 6.6 74 157-232 81-164 (235)
89 2vdv_E TRNA (guanine-N(7)-)-me 98.2 4E-06 1.4E-10 68.1 8.1 57 167-223 48-119 (246)
90 1wzn_A SAM-dependent methyltra 98.2 6.9E-06 2.4E-10 66.5 9.5 64 167-232 40-111 (252)
91 2fyt_A Protein arginine N-meth 98.2 3.4E-06 1.2E-10 72.1 7.9 72 159-232 56-137 (340)
92 3adn_A Spermidine synthase; am 98.2 1.9E-06 6.3E-11 72.3 6.1 66 167-232 82-163 (294)
93 1dus_A MJ0882; hypothetical pr 98.2 3.5E-06 1.2E-10 64.9 7.3 73 157-232 42-125 (194)
94 3fzg_A 16S rRNA methylase; met 98.2 8.8E-07 3E-11 69.4 3.7 64 167-232 48-121 (200)
95 3fpf_A Mtnas, putative unchara 98.2 2.3E-06 7.9E-11 71.6 6.5 66 166-232 120-194 (298)
96 4fsd_A Arsenic methyltransfera 98.2 3.1E-06 1E-10 73.5 7.5 66 167-232 82-172 (383)
97 2xvm_A Tellurite resistance pr 98.2 3.8E-06 1.3E-10 65.3 7.3 73 157-232 22-103 (199)
98 2ozv_A Hypothetical protein AT 98.2 2.7E-06 9.2E-11 69.9 6.7 67 166-232 34-121 (260)
99 3duw_A OMT, O-methyltransferas 98.2 7.3E-07 2.5E-11 71.1 3.2 67 166-232 56-139 (223)
100 1xdz_A Methyltransferase GIDB; 98.2 1.4E-06 4.9E-11 70.5 4.8 67 166-232 68-147 (240)
101 2gpy_A O-methyltransferase; st 98.2 4.4E-06 1.5E-10 67.1 7.7 67 166-232 52-132 (233)
102 3l8d_A Methyltransferase; stru 98.2 7.7E-06 2.6E-10 65.6 9.1 64 167-232 52-122 (242)
103 4htf_A S-adenosylmethionine-de 98.2 2.5E-06 8.6E-11 70.6 6.3 71 158-232 60-142 (285)
104 3tfw_A Putative O-methyltransf 98.2 9.9E-07 3.4E-11 71.9 3.7 67 166-232 61-142 (248)
105 3h2b_A SAM-dependent methyltra 98.2 1.8E-06 6.3E-11 67.6 5.1 62 169-232 42-108 (203)
106 2yxe_A Protein-L-isoaspartate 98.2 4.1E-06 1.4E-10 66.3 7.1 74 158-232 68-152 (215)
107 2esr_A Methyltransferase; stru 98.2 1.2E-06 4.2E-11 67.2 3.9 74 158-232 21-106 (177)
108 3orh_A Guanidinoacetate N-meth 98.2 7.9E-07 2.7E-11 72.0 2.9 64 167-231 59-133 (236)
109 3tma_A Methyltransferase; thum 98.2 3.7E-06 1.3E-10 72.1 7.2 75 157-232 193-278 (354)
110 2pxx_A Uncharacterized protein 98.1 3E-06 1E-10 66.6 6.2 65 167-232 41-113 (215)
111 1kpg_A CFA synthase;, cyclopro 98.1 4.8E-06 1.6E-10 68.9 7.6 73 157-232 54-135 (287)
112 2pjd_A Ribosomal RNA small sub 98.1 3E-06 1E-10 72.4 6.4 75 157-232 186-267 (343)
113 3grz_A L11 mtase, ribosomal pr 98.1 4.8E-06 1.7E-10 65.4 7.0 65 167-232 59-131 (205)
114 1fbn_A MJ fibrillarin homologu 98.1 3.8E-06 1.3E-10 67.4 6.5 66 166-231 72-148 (230)
115 2p7i_A Hypothetical protein; p 98.1 3.6E-06 1.2E-10 67.6 6.2 64 167-232 41-109 (250)
116 3lpm_A Putative methyltransfer 98.1 3.4E-06 1.2E-10 69.1 6.1 66 166-232 46-125 (259)
117 3tr6_A O-methyltransferase; ce 98.1 2.5E-06 8.6E-11 68.0 5.1 67 166-232 62-146 (225)
118 3eey_A Putative rRNA methylase 98.1 3.8E-06 1.3E-10 65.5 6.0 67 166-232 20-99 (197)
119 3lbf_A Protein-L-isoaspartate 98.1 5.8E-06 2E-10 65.1 7.1 71 159-232 69-149 (210)
120 3i9f_A Putative type 11 methyl 98.1 1.5E-06 5.2E-11 66.1 3.5 69 159-232 9-81 (170)
121 2ipx_A RRNA 2'-O-methyltransfe 98.1 2.9E-06 9.7E-11 68.3 5.2 67 166-232 75-153 (233)
122 2fhp_A Methylase, putative; al 98.1 2E-06 6.8E-11 66.3 4.1 66 166-232 42-122 (187)
123 1zq9_A Probable dimethyladenos 98.1 5.2E-06 1.8E-10 69.2 6.8 73 157-232 18-99 (285)
124 3u81_A Catechol O-methyltransf 98.1 2.1E-06 7.3E-11 68.5 4.2 67 166-232 56-140 (221)
125 3d2l_A SAM-dependent methyltra 98.1 5.3E-06 1.8E-10 66.6 6.6 63 167-232 32-102 (243)
126 3g89_A Ribosomal RNA small sub 98.1 2.8E-06 9.6E-11 69.5 4.8 66 167-232 79-157 (249)
127 2avd_A Catechol-O-methyltransf 98.1 1.3E-06 4.3E-11 69.9 2.7 67 166-232 67-151 (229)
128 2bm8_A Cephalosporin hydroxyla 98.1 6.9E-06 2.4E-10 66.5 7.1 65 168-232 81-158 (236)
129 2fk8_A Methoxy mycolic acid sy 98.1 7.6E-06 2.6E-10 68.8 7.6 73 157-232 80-161 (318)
130 1qam_A ERMC' methyltransferase 98.1 6.8E-06 2.3E-10 66.9 7.1 67 157-226 20-92 (244)
131 2y1w_A Histone-arginine methyl 98.1 6.8E-06 2.3E-10 70.4 7.3 73 158-232 41-122 (348)
132 3p2e_A 16S rRNA methylase; met 98.1 6.3E-06 2.2E-10 66.3 6.7 56 167-222 23-89 (225)
133 3m33_A Uncharacterized protein 98.1 5.1E-06 1.8E-10 66.5 6.1 64 167-232 47-117 (226)
134 3gru_A Dimethyladenosine trans 98.1 8.2E-06 2.8E-10 68.4 7.5 72 157-231 40-119 (295)
135 1m6y_A S-adenosyl-methyltransf 98.1 5.4E-06 1.9E-10 69.7 6.4 66 156-222 15-86 (301)
136 1g6q_1 HnRNP arginine N-methyl 98.1 5.4E-06 1.9E-10 70.4 6.5 66 166-232 36-111 (328)
137 1iy9_A Spermidine synthase; ro 98.1 3.5E-06 1.2E-10 69.9 5.1 66 167-232 74-154 (275)
138 1nt2_A Fibrillarin-like PRE-rR 98.1 9.2E-06 3.2E-10 64.6 7.4 67 166-232 55-132 (210)
139 1p91_A Ribosomal RNA large sub 98.0 4.9E-06 1.7E-10 68.2 5.7 66 167-232 84-154 (269)
140 1ej0_A FTSJ; methyltransferase 98.0 8.9E-06 3E-10 61.5 6.7 71 158-232 12-94 (180)
141 3ofk_A Nodulation protein S; N 98.0 6.8E-06 2.3E-10 64.9 6.3 65 166-232 49-120 (216)
142 1ne2_A Hypothetical protein TA 98.0 6.2E-06 2.1E-10 64.6 5.9 64 167-232 50-116 (200)
143 3ggd_A SAM-dependent methyltra 98.0 6E-06 2E-10 66.6 6.0 55 166-222 54-112 (245)
144 2b25_A Hypothetical protein; s 98.0 9.9E-06 3.4E-10 68.8 7.6 75 157-232 95-193 (336)
145 3mti_A RRNA methylase; SAM-dep 98.0 6.2E-06 2.1E-10 63.6 5.8 65 166-232 20-95 (185)
146 3sm3_A SAM-dependent methyltra 98.0 8.4E-06 2.9E-10 64.9 6.7 64 167-232 29-107 (235)
147 3c3p_A Methyltransferase; NP_9 98.0 3.9E-06 1.3E-10 66.3 4.6 66 167-232 55-132 (210)
148 2frn_A Hypothetical protein PH 98.0 5.4E-06 1.9E-10 68.8 5.5 65 167-232 124-198 (278)
149 2yvl_A TRMI protein, hypotheti 98.0 1.5E-05 5E-10 64.3 7.9 72 158-232 82-164 (248)
150 1g8a_A Fibrillarin-like PRE-rR 98.0 1.3E-05 4.5E-10 63.9 7.5 67 166-232 71-149 (227)
151 3a27_A TYW2, uncharacterized p 98.0 6E-06 2E-10 68.3 5.6 67 166-232 117-192 (272)
152 3e23_A Uncharacterized protein 98.0 8.8E-06 3E-10 64.1 6.4 64 166-232 41-108 (211)
153 3frh_A 16S rRNA methylase; met 98.0 8.4E-06 2.9E-10 66.2 6.1 63 167-232 104-174 (253)
154 3uzu_A Ribosomal RNA small sub 98.0 3.9E-06 1.3E-10 69.8 4.2 68 158-226 33-106 (279)
155 3p9n_A Possible methyltransfer 98.0 8.3E-06 2.8E-10 63.3 5.8 64 168-232 44-119 (189)
156 1l3i_A Precorrin-6Y methyltran 98.0 6.1E-06 2.1E-10 63.5 4.9 71 159-232 25-106 (192)
157 3lcc_A Putative methyl chlorid 98.0 5.8E-06 2E-10 66.3 4.9 61 170-232 68-138 (235)
158 3thr_A Glycine N-methyltransfe 98.0 5E-06 1.7E-10 68.9 4.6 71 159-232 49-136 (293)
159 3cc8_A Putative methyltransfer 98.0 1.9E-05 6.5E-10 62.5 7.9 73 155-232 21-99 (230)
160 1dl5_A Protein-L-isoaspartate 98.0 1.4E-05 4.6E-10 67.5 7.2 74 158-232 66-150 (317)
161 1y8c_A S-adenosylmethionine-de 98.0 1.1E-05 3.7E-10 64.7 6.3 63 168-232 37-107 (246)
162 3r0q_C Probable protein argini 98.0 1E-05 3.5E-10 70.0 6.5 66 166-232 61-135 (376)
163 1zx0_A Guanidinoacetate N-meth 98.0 3.6E-06 1.2E-10 67.8 3.4 65 167-232 59-134 (236)
164 2hnk_A SAM-dependent O-methylt 98.0 8.2E-06 2.8E-10 65.8 5.5 57 166-222 58-123 (239)
165 3r3h_A O-methyltransferase, SA 98.0 2.2E-06 7.5E-11 69.7 2.0 67 166-232 58-142 (242)
166 1sui_A Caffeoyl-COA O-methyltr 98.0 4.2E-06 1.4E-10 68.3 3.7 67 166-232 77-162 (247)
167 4hc4_A Protein arginine N-meth 98.0 8.4E-06 2.9E-10 70.6 5.8 62 169-231 84-154 (376)
168 3m70_A Tellurite resistance pr 98.0 1.3E-05 4.5E-10 66.2 6.8 73 157-232 110-190 (286)
169 1xj5_A Spermidine synthase 1; 98.0 5.4E-06 1.9E-10 70.7 4.5 66 167-232 119-200 (334)
170 3ftd_A Dimethyladenosine trans 98.0 1E-05 3.5E-10 66.1 6.0 68 157-226 21-92 (249)
171 3c3y_A Pfomt, O-methyltransfer 98.0 9.4E-06 3.2E-10 65.7 5.7 67 166-232 68-153 (237)
172 2gb4_A Thiopurine S-methyltran 98.0 7.6E-06 2.6E-10 67.0 5.2 64 167-232 67-158 (252)
173 3dr5_A Putative O-methyltransf 97.9 7.3E-06 2.5E-10 65.7 4.8 63 170-232 58-135 (221)
174 3gdh_A Trimethylguanosine synt 97.9 6.6E-06 2.3E-10 66.3 4.6 63 168-232 78-150 (241)
175 2o07_A Spermidine synthase; st 97.9 6.7E-06 2.3E-10 69.2 4.7 66 167-232 94-174 (304)
176 1vbf_A 231AA long hypothetical 97.9 1.9E-05 6.6E-10 63.0 7.2 72 158-232 61-140 (231)
177 2h1r_A Dimethyladenosine trans 97.9 7.7E-06 2.6E-10 68.6 5.0 73 157-232 32-112 (299)
178 3tm4_A TRNA (guanine N2-)-meth 97.9 8E-06 2.8E-10 70.6 5.2 67 166-232 215-292 (373)
179 2nxc_A L11 mtase, ribosomal pr 97.9 4.9E-06 1.7E-10 68.1 3.6 64 167-232 119-190 (254)
180 2fpo_A Methylase YHHF; structu 97.9 8.6E-06 3E-10 64.2 4.9 64 168-232 54-128 (202)
181 1o9g_A RRNA methyltransferase; 97.9 1.1E-05 3.7E-10 65.6 5.6 42 168-209 51-95 (250)
182 3fut_A Dimethyladenosine trans 97.9 1.4E-05 4.9E-10 66.1 6.3 65 158-226 38-107 (271)
183 1inl_A Spermidine synthase; be 97.9 8.2E-06 2.8E-10 68.4 4.9 65 168-232 90-169 (296)
184 3evz_A Methyltransferase; NYSG 97.9 2E-05 6.7E-10 62.9 6.9 66 166-232 53-129 (230)
185 2ex4_A Adrenal gland protein A 97.9 7.2E-06 2.5E-10 66.1 4.2 64 168-232 79-152 (241)
186 3bwc_A Spermidine synthase; SA 97.9 6.2E-06 2.1E-10 69.4 3.9 66 167-232 94-175 (304)
187 2pt6_A Spermidine synthase; tr 97.9 6.7E-06 2.3E-10 69.7 4.1 66 167-232 115-195 (321)
188 3e8s_A Putative SAM dependent 97.9 1.2E-05 4.2E-10 63.5 5.4 72 158-232 43-122 (227)
189 3htx_A HEN1; HEN1, small RNA m 97.9 1.7E-05 5.7E-10 74.6 6.8 66 167-232 720-802 (950)
190 2kw5_A SLR1183 protein; struct 97.9 1.5E-05 5.2E-10 62.2 5.6 60 171-232 32-100 (202)
191 1u2z_A Histone-lysine N-methyl 97.9 3.6E-05 1.2E-09 67.8 8.4 74 158-232 233-329 (433)
192 2p8j_A S-adenosylmethionine-de 97.9 1.7E-05 5.8E-10 62.2 5.7 66 166-232 21-95 (209)
193 1ws6_A Methyltransferase; stru 97.9 4.7E-06 1.6E-10 63.1 2.4 63 168-232 41-116 (171)
194 2ih2_A Modification methylase 97.9 2.9E-05 1E-09 67.7 7.8 71 158-232 30-104 (421)
195 1uir_A Polyamine aminopropyltr 97.9 8.4E-06 2.9E-10 68.9 4.1 66 167-232 76-157 (314)
196 1wy7_A Hypothetical protein PH 97.9 2.6E-05 8.9E-10 61.2 6.5 64 167-232 48-118 (207)
197 3dou_A Ribosomal RNA large sub 97.9 2.7E-05 9.4E-10 60.9 6.6 59 158-222 15-73 (191)
198 3tqs_A Ribosomal RNA small sub 97.9 1.1E-05 3.9E-10 66.1 4.5 66 157-225 19-90 (255)
199 2cmg_A Spermidine synthase; tr 97.9 2.3E-05 7.9E-10 64.5 6.4 63 167-232 71-145 (262)
200 2i7c_A Spermidine synthase; tr 97.8 9.4E-06 3.2E-10 67.6 4.0 66 167-232 77-157 (283)
201 2b2c_A Spermidine synthase; be 97.8 9.4E-06 3.2E-10 68.6 3.8 66 167-232 107-187 (314)
202 3k0b_A Predicted N6-adenine-sp 97.8 3.5E-05 1.2E-09 67.2 7.5 75 157-232 191-313 (393)
203 1r18_A Protein-L-isoaspartate( 97.8 2.3E-05 7.8E-10 62.6 5.8 67 166-232 82-169 (227)
204 1mjf_A Spermidine synthase; sp 97.8 1.4E-05 4.8E-10 66.4 4.5 65 167-232 74-158 (281)
205 3ldu_A Putative methylase; str 97.8 2.8E-05 9.7E-10 67.5 6.6 75 157-232 185-307 (385)
206 1ri5_A MRNA capping enzyme; me 97.8 2.3E-05 7.8E-10 64.8 5.7 65 167-232 63-139 (298)
207 2ift_A Putative methylase HI07 97.8 1.2E-05 4.2E-10 63.2 3.7 64 168-232 53-131 (201)
208 2pbf_A Protein-L-isoaspartate 97.8 4E-05 1.4E-09 61.0 6.7 67 166-232 78-168 (227)
209 2zfu_A Nucleomethylin, cerebra 97.8 5E-05 1.7E-09 59.9 7.0 62 158-232 57-121 (215)
210 3cbg_A O-methyltransferase; cy 97.8 9.8E-06 3.3E-10 65.3 2.7 66 167-232 71-154 (232)
211 3ldg_A Putative uncharacterize 97.8 5.3E-05 1.8E-09 65.8 7.4 76 156-232 183-306 (384)
212 1qyr_A KSGA, high level kasuga 97.8 2.2E-05 7.4E-10 64.3 4.6 66 157-225 11-82 (252)
213 1yub_A Ermam, rRNA methyltrans 97.7 1.6E-05 5.3E-10 64.6 3.6 67 157-226 19-91 (245)
214 1uwv_A 23S rRNA (uracil-5-)-me 97.7 4.4E-05 1.5E-09 67.3 6.6 71 159-232 278-362 (433)
215 2gs9_A Hypothetical protein TT 97.7 3.5E-05 1.2E-09 60.5 5.3 60 168-232 36-101 (211)
216 3bgv_A MRNA CAP guanine-N7 met 97.7 0.00012 4.1E-09 61.3 8.9 87 142-232 10-120 (313)
217 3b73_A PHIH1 repressor-like pr 97.7 6.4E-05 2.2E-09 53.6 6.0 64 17-91 14-79 (111)
218 1vlm_A SAM-dependent methyltra 97.7 5.8E-05 2E-09 59.8 6.3 57 169-232 48-108 (219)
219 1i1n_A Protein-L-isoaspartate 97.7 6.9E-05 2.4E-09 59.6 6.5 67 166-232 75-157 (226)
220 2nyu_A Putative ribosomal RNA 97.7 9.3E-05 3.2E-09 57.3 7.1 60 159-222 13-82 (196)
221 1af7_A Chemotaxis receptor met 97.7 6.5E-05 2.2E-09 62.2 6.5 64 169-232 106-219 (274)
222 3lcv_B Sisomicin-gentamicin re 97.7 1.4E-05 4.8E-10 65.5 2.4 66 167-232 131-204 (281)
223 2avn_A Ubiquinone/menaquinone 97.7 5.8E-05 2E-09 61.5 6.0 63 168-232 54-120 (260)
224 3k6r_A Putative transferase PH 97.6 4.8E-05 1.7E-09 63.1 5.0 66 166-232 123-198 (278)
225 2oxt_A Nucleoside-2'-O-methylt 97.6 9E-05 3.1E-09 61.1 6.3 63 166-232 72-146 (265)
226 1ixk_A Methyltransferase; open 97.6 7.6E-05 2.6E-09 63.0 6.0 71 161-232 112-193 (315)
227 2heo_A Z-DNA binding protein 1 97.6 4.6E-05 1.6E-09 49.3 3.6 56 17-82 11-66 (67)
228 3iv6_A Putative Zn-dependent a 97.6 7E-05 2.4E-09 61.6 5.5 51 157-210 35-86 (261)
229 2wa2_A Non-structural protein 97.6 8.3E-05 2.8E-09 61.6 5.9 63 166-232 80-154 (276)
230 3o4f_A Spermidine synthase; am 97.6 0.0001 3.4E-09 61.6 6.3 66 167-232 82-163 (294)
231 2r6z_A UPF0341 protein in RSP 97.5 6.4E-05 2.2E-09 61.7 4.5 65 166-232 81-167 (258)
232 3ajd_A Putative methyltransfer 97.5 6E-05 2.1E-09 62.2 4.3 67 166-232 81-162 (274)
233 1y0u_A Arsenical resistance op 97.5 9.7E-05 3.3E-09 51.0 4.5 61 12-86 27-87 (96)
234 3sso_A Methyltransferase; macr 97.5 9.2E-05 3.2E-09 64.4 5.2 63 168-232 216-294 (419)
235 3dmg_A Probable ribosomal RNA 97.5 0.00011 3.9E-09 63.6 5.7 63 168-232 233-304 (381)
236 2p41_A Type II methyltransfera 97.4 0.00014 4.9E-09 61.1 5.3 64 166-232 80-154 (305)
237 4df3_A Fibrillarin-like rRNA/T 97.4 0.00044 1.5E-08 55.8 7.6 57 166-222 75-137 (233)
238 2qfm_A Spermine synthase; sper 97.4 0.0001 3.5E-09 63.3 3.9 65 167-232 187-273 (364)
239 3id6_C Fibrillarin-like rRNA/T 97.4 0.00071 2.4E-08 54.6 8.6 67 166-232 74-152 (232)
240 4gqb_A Protein arginine N-meth 97.3 0.00035 1.2E-08 64.2 7.0 95 130-231 323-433 (637)
241 2igt_A SAM dependent methyltra 97.3 9.1E-05 3.1E-09 63.0 3.0 63 168-232 153-231 (332)
242 2f8l_A Hypothetical protein LM 97.3 0.00017 5.8E-09 61.4 4.7 66 167-232 129-207 (344)
243 2yx1_A Hypothetical protein MJ 97.3 0.00019 6.4E-09 61.1 4.8 63 167-232 194-264 (336)
244 2jjq_A Uncharacterized RNA met 97.3 0.00036 1.2E-08 61.3 6.7 63 167-232 289-359 (425)
245 3bzb_A Uncharacterized protein 97.3 0.00046 1.6E-08 57.1 7.0 65 167-232 78-169 (281)
246 3giw_A Protein of unknown func 97.3 0.00037 1.3E-08 57.6 6.2 56 167-222 77-142 (277)
247 2i62_A Nicotinamide N-methyltr 97.3 8E-05 2.7E-09 60.4 2.0 42 167-209 55-97 (265)
248 2yxl_A PH0851 protein, 450AA l 97.3 0.00038 1.3E-08 61.6 6.5 71 161-232 253-336 (450)
249 3mq0_A Transcriptional repress 97.3 0.00018 6.3E-09 59.5 4.1 61 18-88 32-92 (275)
250 4azs_A Methyltransferase WBDD; 97.3 0.00017 5.7E-09 65.8 4.1 63 167-231 65-139 (569)
251 1wg8_A Predicted S-adenosylmet 97.3 0.00051 1.7E-08 56.8 6.5 64 156-222 11-77 (285)
252 1xmk_A Double-stranded RNA-spe 97.2 0.00038 1.3E-08 46.4 4.6 62 17-87 12-74 (79)
253 1qbj_A Protein (double-strande 97.2 0.00057 1.9E-08 45.8 5.3 70 14-89 8-77 (81)
254 2b78_A Hypothetical protein SM 97.2 0.00016 5.5E-09 62.7 2.6 65 167-232 211-291 (385)
255 2oyr_A UPF0341 protein YHIQ; a 97.1 0.00056 1.9E-08 56.1 5.2 73 157-232 76-170 (258)
256 1ub9_A Hypothetical protein PH 97.1 0.00068 2.3E-08 46.6 4.7 72 11-89 11-84 (100)
257 3v97_A Ribosomal RNA large sub 97.1 0.00085 2.9E-08 62.7 6.8 75 157-232 180-309 (703)
258 2oqg_A Possible transcriptiona 97.1 0.00059 2E-08 48.2 4.5 66 13-87 18-83 (114)
259 3pqk_A Biofilm growth-associat 97.1 0.00069 2.4E-08 47.1 4.7 65 11-84 18-82 (102)
260 3ll7_A Putative methyltransfer 97.0 0.00033 1.1E-08 61.2 3.5 65 166-232 91-169 (410)
261 1qgp_A Protein (double strande 97.0 0.00064 2.2E-08 45.1 4.1 63 15-83 13-75 (77)
262 1sqg_A SUN protein, FMU protei 97.0 0.00092 3.1E-08 58.7 6.3 67 166-232 244-321 (429)
263 2as0_A Hypothetical protein PH 97.0 0.00026 8.7E-09 61.5 2.6 64 168-232 217-295 (396)
264 1mkm_A ICLR transcriptional re 97.0 0.00098 3.3E-08 54.2 5.9 61 18-88 10-70 (249)
265 1wxx_A TT1595, hypothetical pr 97.0 0.00026 8.8E-09 61.3 2.4 63 168-232 209-285 (382)
266 2xrn_A HTH-type transcriptiona 97.0 0.00065 2.2E-08 55.0 4.3 62 19-89 9-70 (241)
267 2vdw_A Vaccinia virus capping 96.9 0.00076 2.6E-08 56.5 4.8 52 168-220 48-112 (302)
268 1r7j_A Conserved hypothetical 96.9 0.0014 4.8E-08 45.2 5.2 49 34-91 21-69 (95)
269 3jth_A Transcription activator 96.9 0.00054 1.9E-08 47.2 3.1 65 12-85 19-83 (98)
270 1u2w_A CADC repressor, cadmium 96.9 0.00086 2.9E-08 48.4 4.2 68 10-85 36-103 (122)
271 3f6o_A Probable transcriptiona 96.9 0.00091 3.1E-08 47.9 4.3 68 10-86 12-79 (118)
272 2okc_A Type I restriction enzy 96.9 0.001 3.5E-08 58.7 5.4 73 159-232 163-259 (445)
273 3bt7_A TRNA (uracil-5-)-methyl 96.9 0.00062 2.1E-08 58.6 3.8 51 170-222 215-272 (369)
274 3cuo_A Uncharacterized HTH-typ 96.9 0.00076 2.6E-08 46.3 3.6 66 12-85 20-85 (99)
275 4auk_A Ribosomal RNA large sub 96.9 0.0015 5.3E-08 56.0 6.0 64 166-231 209-275 (375)
276 1on2_A Transcriptional regulat 96.9 0.0019 6.7E-08 47.4 5.9 51 32-90 21-71 (142)
277 3ua3_A Protein arginine N-meth 96.8 0.0015 5.3E-08 60.4 6.1 95 130-231 378-500 (745)
278 3df8_A Possible HXLR family tr 96.8 0.0017 5.7E-08 46.1 5.0 69 12-90 23-94 (111)
279 4e2x_A TCAB9; kijanose, tetron 96.8 0.0011 3.8E-08 57.7 4.7 52 156-210 96-148 (416)
280 3c0k_A UPF0064 protein YCCW; P 96.8 0.00049 1.7E-08 59.8 2.5 65 167-232 219-299 (396)
281 2y75_A HTH-type transcriptiona 96.8 0.0018 6.2E-08 47.0 5.1 57 21-83 14-70 (129)
282 3r4k_A Transcriptional regulat 96.8 0.00034 1.2E-08 57.3 1.3 61 19-88 9-69 (260)
283 1tbx_A ORF F-93, hypothetical 96.8 0.0018 6E-08 44.7 4.8 66 18-91 10-79 (99)
284 2aot_A HMT, histamine N-methyl 96.7 0.0017 5.8E-08 53.7 5.2 41 168-208 52-99 (292)
285 3m6w_A RRNA methylase; rRNA me 96.7 0.00096 3.3E-08 59.2 3.8 66 166-232 99-176 (464)
286 2b9e_A NOL1/NOP2/SUN domain fa 96.7 0.0029 9.9E-08 53.2 6.6 67 166-232 100-180 (309)
287 2wte_A CSA3; antiviral protein 96.7 0.002 7E-08 52.2 5.4 65 17-91 153-217 (244)
288 3v97_A Ribosomal RNA large sub 96.7 0.0011 3.7E-08 61.9 4.2 64 168-232 539-615 (703)
289 3tka_A Ribosomal RNA small sub 96.7 0.004 1.4E-07 52.7 7.3 66 156-222 46-115 (347)
290 3f6v_A Possible transcriptiona 96.7 0.0015 5E-08 49.1 4.2 70 9-87 51-120 (151)
291 2g72_A Phenylethanolamine N-me 96.7 0.00061 2.1E-08 56.3 2.2 41 168-209 71-112 (289)
292 2a14_A Indolethylamine N-methy 96.7 0.00032 1.1E-08 57.3 0.4 41 167-208 54-95 (263)
293 2jsc_A Transcriptional regulat 96.7 0.0013 4.5E-08 47.1 3.7 67 10-85 15-81 (118)
294 1xn7_A Hypothetical protein YH 96.7 0.0024 8.2E-08 42.4 4.5 44 20-70 6-49 (78)
295 2k02_A Ferrous iron transport 96.6 0.0022 7.6E-08 43.4 4.4 45 20-71 6-50 (87)
296 2o0y_A Transcriptional regulat 96.6 0.00097 3.3E-08 54.6 3.0 60 19-88 26-85 (260)
297 1r1u_A CZRA, repressor protein 96.6 0.0014 4.8E-08 45.9 3.5 66 11-85 21-86 (106)
298 2jt1_A PEFI protein; solution 96.6 0.0022 7.6E-08 42.4 4.1 45 20-70 8-57 (77)
299 2hzt_A Putative HTH-type trans 96.6 0.0026 8.8E-08 44.7 4.7 64 18-89 16-82 (107)
300 2g7u_A Transcriptional regulat 96.6 0.0013 4.3E-08 53.8 3.4 62 19-91 17-78 (257)
301 4dmg_A Putative uncharacterize 96.6 0.0019 6.4E-08 56.2 4.6 62 169-232 215-286 (393)
302 3hp7_A Hemolysin, putative; st 96.6 0.003 1E-07 52.6 5.5 57 158-216 75-134 (291)
303 3opn_A Putative hemolysin; str 96.5 0.0034 1.2E-07 50.4 5.7 49 158-208 27-77 (232)
304 3m4x_A NOL1/NOP2/SUN family pr 96.5 0.0013 4.5E-08 58.2 3.5 71 161-232 99-181 (456)
305 2kko_A Possible transcriptiona 96.5 0.00066 2.3E-08 47.9 1.2 61 16-85 25-85 (108)
306 2k4m_A TR8_protein, UPF0146 pr 96.5 0.0026 9E-08 47.3 4.5 55 166-230 33-93 (153)
307 2frx_A Hypothetical protein YE 96.5 0.0042 1.4E-07 55.4 6.5 65 168-232 117-193 (479)
308 2fu4_A Ferric uptake regulatio 96.5 0.0015 5.3E-08 43.5 2.8 59 18-81 19-82 (83)
309 1z7u_A Hypothetical protein EF 96.5 0.0031 1.1E-07 44.6 4.4 63 20-90 26-91 (112)
310 2htj_A P fimbrial regulatory p 96.5 0.0038 1.3E-07 41.4 4.6 45 19-70 3-47 (81)
311 4a5n_A Uncharacterized HTH-typ 96.4 0.0035 1.2E-07 45.9 4.7 63 20-90 30-95 (131)
312 2pg4_A Uncharacterized protein 96.4 0.0037 1.3E-07 42.7 4.5 66 19-90 18-84 (95)
313 3bja_A Transcriptional regulat 96.3 0.0059 2E-07 44.1 5.5 67 18-91 35-103 (139)
314 3t8r_A Staphylococcus aureus C 96.3 0.0039 1.3E-07 46.3 4.5 46 32-83 27-72 (143)
315 3fm5_A Transcriptional regulat 96.3 0.0043 1.5E-07 45.8 4.6 68 18-91 41-110 (150)
316 1jgs_A Multiple antibiotic res 96.3 0.0063 2.2E-07 44.0 5.5 67 18-91 36-104 (138)
317 2dul_A N(2),N(2)-dimethylguano 96.3 0.0049 1.7E-07 53.2 5.6 65 168-232 47-137 (378)
318 2nnn_A Probable transcriptiona 96.3 0.0065 2.2E-07 44.0 5.5 67 18-91 40-108 (140)
319 3lwf_A LIN1550 protein, putati 96.3 0.0049 1.7E-07 46.6 4.9 46 32-83 43-88 (159)
320 2fsw_A PG_0823 protein; alpha- 96.3 0.0049 1.7E-07 43.2 4.6 62 20-89 29-93 (107)
321 1yyv_A Putative transcriptiona 96.3 0.0036 1.2E-07 45.7 4.0 66 17-90 36-104 (131)
322 2f2e_A PA1607; transcription f 96.3 0.0055 1.9E-07 45.6 5.0 63 19-89 27-90 (146)
323 2ia2_A Putative transcriptiona 96.3 0.0012 4.2E-08 54.1 1.5 57 19-86 24-80 (265)
324 2hr3_A Probable transcriptiona 96.3 0.0098 3.4E-07 43.5 6.4 68 17-91 36-106 (147)
325 1r1t_A Transcriptional repress 96.3 0.0032 1.1E-07 45.4 3.6 62 15-85 45-106 (122)
326 3g3z_A NMB1585, transcriptiona 96.2 0.0065 2.2E-07 44.5 5.3 67 18-91 33-101 (145)
327 2xyq_A Putative 2'-O-methyl tr 96.2 0.0063 2.2E-07 50.6 5.6 59 166-232 61-129 (290)
328 2x4h_A Hypothetical protein SS 96.2 0.007 2.4E-07 44.1 5.3 49 32-89 30-78 (139)
329 2h09_A Transcriptional regulat 96.2 0.01 3.4E-07 44.2 6.2 56 24-90 48-103 (155)
330 2rdp_A Putative transcriptiona 96.2 0.0069 2.3E-07 44.5 5.2 67 18-91 44-112 (150)
331 2gxg_A 146AA long hypothetical 96.2 0.0099 3.4E-07 43.3 6.1 66 18-91 39-106 (146)
332 3nrv_A Putative transcriptiona 96.1 0.0064 2.2E-07 44.6 4.8 67 18-91 42-110 (148)
333 2eth_A Transcriptional regulat 96.1 0.012 3.9E-07 43.6 6.2 68 17-91 45-114 (154)
334 3bpv_A Transcriptional regulat 96.1 0.006 2.1E-07 44.1 4.5 67 18-91 31-99 (138)
335 3k0l_A Repressor protein; heli 96.1 0.011 3.6E-07 44.3 5.9 67 18-91 48-116 (162)
336 3bdd_A Regulatory protein MARR 96.1 0.0098 3.4E-07 43.1 5.5 67 18-91 33-102 (142)
337 3oop_A LIN2960 protein; protei 96.1 0.0061 2.1E-07 44.5 4.4 67 18-91 39-107 (143)
338 2obp_A Putative DNA-binding pr 96.1 0.01 3.6E-07 40.9 5.2 55 32-90 35-89 (96)
339 1sfx_A Conserved hypothetical 96.1 0.0055 1.9E-07 42.3 3.9 48 17-71 21-68 (109)
340 3ech_A MEXR, multidrug resista 96.0 0.0067 2.3E-07 44.3 4.5 68 17-91 38-107 (142)
341 3bj6_A Transcriptional regulat 96.0 0.0072 2.5E-07 44.5 4.7 67 18-91 42-110 (152)
342 3axs_A Probable N(2),N(2)-dime 96.0 0.0044 1.5E-07 53.8 3.9 65 168-232 52-131 (392)
343 3cdh_A Transcriptional regulat 96.0 0.0095 3.2E-07 44.1 5.3 67 18-91 45-113 (155)
344 2fbi_A Probable transcriptiona 96.0 0.0068 2.3E-07 44.0 4.4 67 18-91 38-106 (142)
345 2fa5_A Transcriptional regulat 96.0 0.0084 2.9E-07 44.7 5.0 67 18-91 51-119 (162)
346 1lj9_A Transcriptional regulat 96.0 0.0087 3E-07 43.6 4.9 66 19-91 32-99 (144)
347 2qvo_A Uncharacterized protein 96.0 0.0042 1.4E-07 42.5 2.8 53 33-90 30-82 (95)
348 2a61_A Transcriptional regulat 96.0 0.007 2.4E-07 44.1 4.3 67 18-91 35-103 (145)
349 2nyx_A Probable transcriptiona 96.0 0.0081 2.8E-07 45.3 4.7 67 18-91 47-115 (168)
350 2fbh_A Transcriptional regulat 95.9 0.01 3.6E-07 43.2 5.0 65 19-90 40-107 (146)
351 1bja_A Transcription regulator 95.9 0.018 6.2E-07 39.5 5.7 62 18-91 18-80 (95)
352 3u1d_A Uncharacterized protein 95.9 0.016 5.6E-07 43.3 5.9 88 16-115 29-124 (151)
353 3kp7_A Transcriptional regulat 95.9 0.0085 2.9E-07 44.2 4.4 66 18-91 40-109 (151)
354 1ylf_A RRF2 family protein; st 95.8 0.0079 2.7E-07 44.8 4.1 60 10-83 14-73 (149)
355 2qww_A Transcriptional regulat 95.8 0.011 3.6E-07 43.7 4.8 67 18-91 43-113 (154)
356 2pex_A Transcriptional regulat 95.8 0.01 3.5E-07 43.8 4.7 67 18-91 49-117 (153)
357 1oyi_A Double-stranded RNA-bin 95.8 0.0073 2.5E-07 40.3 3.3 59 16-84 17-75 (82)
358 3e6m_A MARR family transcripti 95.7 0.01 3.6E-07 44.3 4.5 67 18-91 55-123 (161)
359 3eco_A MEPR; mutlidrug efflux 95.7 0.013 4.3E-07 42.5 4.8 69 18-91 33-103 (139)
360 2bv6_A MGRA, HTH-type transcri 95.7 0.011 3.7E-07 43.0 4.4 67 18-91 39-107 (142)
361 1s3j_A YUSO protein; structura 95.7 0.0072 2.4E-07 44.7 3.4 67 18-91 39-107 (155)
362 3s2w_A Transcriptional regulat 95.7 0.011 3.8E-07 44.0 4.4 66 19-91 53-120 (159)
363 3cjn_A Transcriptional regulat 95.6 0.01 3.5E-07 44.3 4.1 67 18-91 54-122 (162)
364 3r0a_A Putative transcriptiona 95.6 0.0078 2.7E-07 43.3 3.3 47 18-70 28-75 (123)
365 2lkp_A Transcriptional regulat 95.6 0.0085 2.9E-07 42.6 3.4 51 12-70 28-78 (119)
366 1z91_A Organic hydroperoxide r 95.6 0.0095 3.3E-07 43.5 3.8 67 18-91 42-110 (147)
367 3p8z_A Mtase, non-structural p 95.6 0.023 7.8E-07 45.7 6.0 74 157-231 68-149 (267)
368 3hsr_A HTH-type transcriptiona 95.6 0.0062 2.1E-07 44.4 2.6 65 20-91 40-106 (140)
369 3k69_A Putative transcription 95.6 0.012 4.3E-07 44.5 4.3 46 32-83 27-72 (162)
370 3tgn_A ADC operon repressor AD 95.6 0.015 5.1E-07 42.4 4.7 67 17-91 39-107 (146)
371 3boq_A Transcriptional regulat 95.5 0.011 3.9E-07 43.9 4.0 68 18-91 49-118 (160)
372 2zkz_A Transcriptional repress 95.5 0.0078 2.7E-07 41.5 2.8 67 10-85 21-87 (99)
373 3c6k_A Spermine synthase; sper 95.5 0.014 4.9E-07 50.2 5.0 54 168-222 205-273 (381)
374 2frh_A SARA, staphylococcal ac 95.5 0.011 3.9E-07 42.5 3.7 68 19-91 40-109 (127)
375 3deu_A Transcriptional regulat 95.5 0.014 4.7E-07 44.1 4.3 68 18-91 55-124 (166)
376 3f3x_A Transcriptional regulat 95.5 0.011 3.8E-07 43.1 3.6 65 18-91 39-106 (144)
377 3bro_A Transcriptional regulat 95.5 0.016 5.5E-07 41.9 4.5 68 18-90 36-105 (141)
378 3jw4_A Transcriptional regulat 95.4 0.016 5.5E-07 42.5 4.5 69 18-91 43-113 (148)
379 1xd7_A YWNA; structural genomi 95.4 0.014 4.7E-07 43.3 4.1 60 8-83 7-66 (145)
380 4aik_A Transcriptional regulat 95.4 0.028 9.6E-07 41.7 5.8 66 20-91 35-102 (151)
381 3b5i_A S-adenosyl-L-methionine 95.4 0.041 1.4E-06 47.3 7.4 63 169-231 53-155 (374)
382 3hrs_A Metalloregulator SCAR; 95.4 0.016 5.6E-07 45.8 4.6 52 32-91 19-70 (214)
383 2fe3_A Peroxide operon regulat 95.4 0.026 9E-07 41.7 5.4 59 18-82 24-87 (145)
384 4hbl_A Transcriptional regulat 95.3 0.0096 3.3E-07 43.9 3.0 66 18-90 43-110 (149)
385 2o03_A Probable zinc uptake re 95.1 0.029 9.8E-07 40.8 4.9 61 15-81 10-75 (131)
386 2fxa_A Protease production reg 95.1 0.021 7E-07 44.9 4.3 66 19-91 51-118 (207)
387 2p4w_A Transcriptional regulat 95.0 0.026 8.9E-07 44.3 4.8 69 10-86 9-81 (202)
388 2px2_A Genome polyprotein [con 95.0 0.018 6E-07 46.9 3.7 72 158-231 64-144 (269)
389 3u2r_A Regulatory protein MARR 95.0 0.02 6.7E-07 43.1 3.8 68 18-91 48-118 (168)
390 1rjd_A PPM1P, carboxy methyl t 94.9 0.039 1.3E-06 46.7 5.7 56 167-222 96-178 (334)
391 3nqo_A MARR-family transcripti 94.8 0.037 1.3E-06 42.6 5.0 70 17-91 42-113 (189)
392 1q1h_A TFE, transcription fact 94.7 0.03 1E-06 39.1 4.0 47 18-70 20-66 (110)
393 2lnb_A Z-DNA-binding protein 1 94.7 0.034 1.2E-06 36.3 3.8 56 17-82 20-75 (80)
394 1ku9_A Hypothetical protein MJ 94.7 0.034 1.2E-06 40.4 4.4 57 21-83 31-87 (152)
395 2ar0_A M.ecoki, type I restric 94.7 0.02 6.9E-07 51.7 3.6 73 159-232 161-267 (541)
396 1okr_A MECI, methicillin resis 94.7 0.013 4.3E-07 41.8 1.8 65 18-90 12-81 (123)
397 1i4w_A Mitochondrial replicati 94.6 0.089 3E-06 44.9 7.3 54 169-222 59-116 (353)
398 2vn2_A DNAD, chromosome replic 94.5 0.056 1.9E-06 39.1 5.2 51 33-87 51-105 (128)
399 2k4b_A Transcriptional regulat 94.5 0.023 7.9E-07 39.3 2.9 51 18-71 37-87 (99)
400 2fbk_A Transcriptional regulat 94.5 0.022 7.6E-07 43.4 3.1 70 18-91 71-142 (181)
401 2qlz_A Transcription factor PF 94.5 0.012 4E-07 47.4 1.5 70 9-86 5-79 (232)
402 2cfx_A HTH-type transcriptiona 94.4 0.045 1.6E-06 40.2 4.4 47 17-70 6-52 (144)
403 2efj_A 3,7-dimethylxanthine me 94.3 0.083 2.8E-06 45.6 6.5 63 169-231 53-154 (384)
404 3khk_A Type I restriction-modi 94.3 0.023 8E-07 51.3 3.2 63 170-232 246-335 (544)
405 3mwm_A ZUR, putative metal upt 94.3 0.052 1.8E-06 39.8 4.5 66 15-82 13-79 (139)
406 2w25_A Probable transcriptiona 94.3 0.048 1.6E-06 40.3 4.3 47 17-70 8-54 (150)
407 4b8x_A SCO5413, possible MARR- 94.2 0.031 1.1E-06 41.2 3.1 56 32-91 50-107 (147)
408 4esf_A PADR-like transcription 94.1 0.15 5E-06 36.2 6.4 74 10-91 5-88 (117)
409 3cta_A Riboflavin kinase; stru 94.0 0.044 1.5E-06 43.6 4.0 69 18-91 9-80 (230)
410 2p5v_A Transcriptional regulat 94.0 0.056 1.9E-06 40.5 4.3 47 17-70 11-57 (162)
411 2pn6_A ST1022, 150AA long hypo 94.0 0.041 1.4E-06 40.6 3.5 47 17-70 4-50 (150)
412 2esh_A Conserved hypothetical 94.0 0.12 4.1E-06 36.7 5.8 72 12-91 9-92 (118)
413 2xig_A Ferric uptake regulatio 93.9 0.072 2.5E-06 39.6 4.8 60 16-81 27-91 (150)
414 1p6r_A Penicillinase repressor 93.9 0.024 8.4E-07 37.4 1.9 52 17-71 10-61 (82)
415 3lkd_A Type I restriction-modi 93.9 0.045 1.5E-06 49.5 4.2 65 168-232 221-303 (542)
416 2dbb_A Putative HTH-type trans 93.8 0.064 2.2E-06 39.6 4.3 47 17-70 10-56 (151)
417 4fx0_A Probable transcriptiona 93.8 0.053 1.8E-06 40.0 3.7 67 21-91 38-107 (148)
418 1m6e_X S-adenosyl-L-methionnin 93.7 0.073 2.5E-06 45.5 5.0 65 167-231 50-144 (359)
419 3s1s_A Restriction endonucleas 93.7 0.088 3E-06 49.7 5.8 67 166-232 319-405 (878)
420 3elk_A Putative transcriptiona 93.5 0.057 2E-06 38.4 3.4 76 8-91 6-91 (117)
421 1uly_A Hypothetical protein PH 93.5 0.078 2.7E-06 41.2 4.4 54 9-70 13-66 (192)
422 2ia0_A Putative HTH-type trans 93.5 0.078 2.7E-06 40.3 4.3 47 17-70 18-64 (171)
423 3f8b_A Transcriptional regulat 93.5 0.17 5.7E-06 35.8 5.8 75 9-91 5-91 (116)
424 2cyy_A Putative HTH-type trans 93.3 0.055 1.9E-06 40.0 3.2 47 17-70 8-54 (151)
425 2cg4_A Regulatory protein ASNC 93.3 0.065 2.2E-06 39.7 3.6 47 17-70 9-55 (152)
426 3gcz_A Polyprotein; flavivirus 93.3 0.063 2.1E-06 44.2 3.7 43 158-201 81-123 (282)
427 1fx7_A Iron-dependent represso 93.3 0.081 2.8E-06 42.1 4.3 48 35-90 26-73 (230)
428 2e1c_A Putative HTH-type trans 93.3 0.074 2.5E-06 40.4 3.9 47 17-70 28-74 (171)
429 2d1h_A ST1889, 109AA long hypo 93.2 0.075 2.6E-06 36.4 3.6 35 32-70 35-69 (109)
430 3hhh_A Transcriptional regulat 93.2 0.16 5.6E-06 36.0 5.4 75 9-91 6-90 (116)
431 2qy6_A UPF0209 protein YFCK; s 93.1 0.038 1.3E-06 45.0 2.1 33 168-200 60-104 (257)
432 2dk5_A DNA-directed RNA polyme 93.1 0.094 3.2E-06 35.6 3.7 48 18-70 22-69 (91)
433 1i1g_A Transcriptional regulat 92.9 0.069 2.4E-06 38.8 3.2 46 18-70 6-51 (141)
434 3l7w_A Putative uncharacterize 92.9 0.058 2E-06 37.7 2.6 70 14-91 7-83 (108)
435 3i4p_A Transcriptional regulat 92.8 0.083 2.9E-06 39.7 3.6 47 17-70 4-50 (162)
436 2p8t_A Hypothetical protein PH 92.8 0.12 4.1E-06 40.4 4.4 49 32-89 29-77 (200)
437 2qq9_A Diphtheria toxin repres 92.7 0.17 5.7E-06 40.2 5.4 51 33-91 24-74 (226)
438 2v79_A DNA replication protein 92.7 0.14 4.8E-06 37.4 4.6 52 33-88 51-106 (135)
439 3k2z_A LEXA repressor; winged 92.6 0.12 4E-06 40.1 4.3 41 24-70 17-57 (196)
440 1p4x_A Staphylococcal accessor 92.6 0.13 4.4E-06 41.7 4.6 68 19-91 161-230 (250)
441 1j5y_A Transcriptional regulat 92.6 0.15 5E-06 39.3 4.8 58 15-83 20-78 (187)
442 2xvc_A ESCRT-III, SSO0910; cel 92.3 0.12 4.2E-06 31.5 3.1 46 18-69 12-57 (59)
443 3lkz_A Non-structural protein 92.3 0.18 6.2E-06 41.8 5.1 73 158-231 85-165 (321)
444 1xma_A Predicted transcription 92.1 0.12 4.1E-06 38.2 3.6 70 14-91 39-120 (145)
445 1mzb_A Ferric uptake regulatio 92.0 0.15 5E-06 37.2 3.9 60 17-81 19-83 (136)
446 1sfu_A 34L protein; protein/Z- 91.7 0.3 1E-05 31.7 4.7 35 32-70 28-62 (75)
447 3i71_A Ethanolamine utilizatio 91.6 0.43 1.5E-05 29.1 4.9 50 23-83 10-59 (68)
448 3evf_A RNA-directed RNA polyme 91.6 0.15 5.1E-06 41.8 3.9 35 166-200 72-106 (277)
449 2zig_A TTHA0409, putative modi 91.4 0.23 7.7E-06 41.1 4.9 40 168-209 235-275 (297)
450 2wk1_A NOVP; transferase, O-me 91.3 0.15 5.2E-06 42.0 3.7 66 167-232 105-215 (282)
451 1yg2_A Gene activator APHA; vi 91.2 0.31 1.1E-05 37.1 5.2 65 17-89 3-79 (179)
452 2g9w_A Conserved hypothetical 91.0 0.17 5.9E-06 36.7 3.4 53 17-71 10-62 (138)
453 1hsj_A Fusion protein consisti 90.8 0.18 6.3E-06 44.3 4.0 67 19-90 407-475 (487)
454 2hoe_A N-acetylglucosamine kin 90.8 0.14 4.8E-06 43.8 3.1 72 8-87 12-88 (380)
455 2uyo_A Hypothetical protein ML 90.4 0.36 1.2E-05 40.3 5.2 54 167-222 101-164 (310)
456 1jhg_A Trp operon repressor; c 90.3 0.31 1.1E-05 33.7 3.9 41 15-63 44-84 (101)
457 4g6q_A Putative uncharacterize 90.2 0.11 3.6E-06 40.0 1.7 70 10-87 17-91 (182)
458 1v4r_A Transcriptional repress 90.2 0.15 5.3E-06 34.9 2.4 54 10-70 13-68 (102)
459 1zkd_A DUF185; NESG, RPR58, st 90.2 0.89 3.1E-05 39.1 7.6 63 138-205 55-124 (387)
460 4esb_A Transcriptional regulat 90.2 0.3 1E-05 34.5 3.9 67 17-91 10-86 (115)
461 1sd4_A Penicillinase repressor 89.6 0.18 6.1E-06 35.7 2.4 52 17-71 11-62 (126)
462 3eyy_A Putative iron uptake re 89.4 0.24 8.2E-06 36.5 3.0 62 17-81 20-82 (145)
463 1z6r_A MLC protein; transcript 89.3 0.33 1.1E-05 41.8 4.2 51 13-70 13-63 (406)
464 4ets_A Ferric uptake regulatio 89.2 0.44 1.5E-05 35.8 4.4 63 18-82 35-100 (162)
465 1cf7_A Protein (transcription 89.0 0.29 9.8E-06 32.0 2.8 46 21-70 19-64 (76)
466 2o0m_A Transcriptional regulat 88.9 0.078 2.7E-06 45.0 0.0 61 18-90 22-82 (345)
467 2w57_A Ferric uptake regulatio 88.7 0.23 7.8E-06 36.8 2.5 60 17-81 18-82 (150)
468 2p5k_A Arginine repressor; DNA 88.5 0.5 1.7E-05 29.0 3.7 39 21-70 10-53 (64)
469 1bia_A BIRA bifunctional prote 87.9 0.47 1.6E-05 39.7 4.2 56 18-83 7-62 (321)
470 2vxz_A Pyrsv_GP04; viral prote 87.8 0.55 1.9E-05 34.6 3.9 47 18-72 13-59 (165)
471 2pjp_A Selenocysteine-specific 87.8 0.57 2E-05 33.2 4.0 43 33-83 20-62 (121)
472 3eld_A Methyltransferase; flav 87.4 0.35 1.2E-05 40.1 3.0 36 166-201 79-114 (300)
473 3lmm_A Uncharacterized protein 87.1 0.6 2.1E-05 42.5 4.7 62 18-91 432-498 (583)
474 1p4x_A Staphylococcal accessor 87.0 0.68 2.3E-05 37.3 4.5 67 20-91 38-106 (250)
475 1z05_A Transcriptional regulat 86.9 0.64 2.2E-05 40.3 4.6 51 13-70 36-86 (429)
476 2w48_A Sorbitol operon regulat 86.5 0.9 3.1E-05 37.7 5.2 35 32-70 20-55 (315)
477 2qlz_A Transcription factor PF 85.4 0.69 2.4E-05 36.9 3.7 51 21-83 170-220 (232)
478 2yu3_A DNA-directed RNA polyme 85.3 0.52 1.8E-05 32.1 2.5 49 17-70 38-86 (95)
479 2ld4_A Anamorsin; methyltransf 85.1 0.31 1.1E-05 36.4 1.5 51 166-232 10-69 (176)
480 3ri2_A Transcriptional regulat 84.9 1.4 4.7E-05 31.4 4.8 75 8-91 13-95 (123)
481 3eyi_A Z-DNA-binding protein 1 84.4 1.3 4.6E-05 28.0 3.9 46 18-70 12-58 (72)
482 3iht_A S-adenosyl-L-methionine 83.8 1.8 6E-05 32.4 4.9 81 141-224 16-96 (174)
483 2py6_A Methyltransferase FKBM; 83.7 1.2 4.1E-05 38.5 4.8 39 167-205 225-266 (409)
484 2dql_A PEX protein; circadian 83.1 2.3 8E-05 29.7 5.3 63 21-91 27-101 (115)
485 3cvo_A Methyltransferase-like 82.7 3.2 0.00011 32.3 6.4 53 166-221 28-90 (202)
486 3maj_A DNA processing chain A; 82.4 0.63 2.2E-05 40.0 2.4 52 19-82 331-382 (382)
487 2co5_A Viral protein F93; vira 81.8 2.6 8.8E-05 28.8 5.0 53 33-90 28-82 (99)
488 2b0l_A GTP-sensing transcripti 81.8 1.1 3.8E-05 30.8 3.1 34 33-70 42-76 (102)
489 3eqx_A FIC domain containing t 81.7 2.5 8.5E-05 36.1 5.9 65 21-93 302-366 (373)
490 2ek5_A Predicted transcription 81.5 2.7 9.1E-05 30.1 5.2 34 33-70 27-61 (129)
491 3tqn_A Transcriptional regulat 81.4 1.9 6.4E-05 30.0 4.3 34 33-70 32-66 (113)
492 1lva_A Selenocysteine-specific 80.4 3.7 0.00013 33.0 6.3 59 16-83 141-199 (258)
493 3rkx_A Biotin-[acetyl-COA-carb 80.1 1.8 6.1E-05 36.3 4.4 57 18-83 5-62 (323)
494 3lsg_A Two-component response 79.7 3.3 0.00011 27.9 5.0 50 32-91 18-67 (103)
495 2qc0_A Uncharacterized protein 79.5 2.7 9.3E-05 35.8 5.4 65 20-92 301-365 (373)
496 3oou_A LIN2118 protein; protei 79.0 2.4 8.2E-05 28.9 4.1 60 21-91 10-69 (108)
497 1tc3_C Protein (TC3 transposas 79.0 1.4 5E-05 24.8 2.6 26 33-62 21-46 (51)
498 1g60_A Adenine-specific methyl 78.7 2.7 9.2E-05 33.7 4.9 40 167-208 211-251 (260)
499 3cuq_B Vacuolar protein-sortin 78.6 3.1 0.0001 32.8 5.1 44 21-71 159-202 (218)
500 3neu_A LIN1836 protein; struct 78.6 2 6.7E-05 30.5 3.7 34 33-70 36-70 (125)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=3.3e-44 Score=311.37 Aligned_cols=223 Identities=19% Similarity=0.293 Sum_probs=198.2
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
+++.||+.|++|++|++|||||+|.+.+ +|+|++|||+++++ +++.++||||+|+++|+|++...+ ..++|++
T Consensus 14 ~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~-~~~~y~~ 86 (353)
T 4a6d_A 14 DYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRG-GKAFYRN 86 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccC-ccceeeC
Confidence 6789999999999999999999999865 69999999999999 999999999999999999875322 3568999
Q ss_pred cHhhhHhh-cCCCCCCccchhccccC----chhhHHHHHHcCCcchhhhhC---CccccccccCchHHHHHHHHHHhcch
Q 039903 82 AHVAKYFV-LNRDGVSLCPSRPWLET----KPYEIYDAVLEGGISFNKVHG---TGFYEYAGNDFRFNGVFNKAMLNHTS 153 (233)
Q Consensus 82 t~~s~~l~-~~~~~~~~~~~~~~~~~----~~~~L~~~l~~g~~~~~~~~g---~~~~~~~~~~~~~~~~f~~am~~~~~ 153 (233)
|+.++.|+ .+++ .++.+++.+... .|.+|++++++|+++|...+| .++|+++.++|+....|+++|...+.
T Consensus 87 t~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~ 165 (353)
T 4a6d_A 87 TELSSDYLTTVSP-TSQCSMLKYMGRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWS 165 (353)
T ss_dssp CHHHHHHHSTTST-TCCHHHHHHHHHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHhhcCCc-hHHHHHHHHhCHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99998755 4444 578888776543 789999999999999999888 36789999999999999999999998
Q ss_pred hcHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC------CCceEEecCcCC-CCCC
Q 039903 154 IVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY------SGVKHIGGIMLE-RIPK 226 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~------~ri~~~~gD~f~-~~P~ 226 (233)
...+.+++.++ |++..+|||||||+|.++.+++++||+++++++|+|+|++.+++. +||++++||||+ +.|.
T Consensus 166 ~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~ 244 (353)
T 4a6d_A 166 VNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPE 244 (353)
T ss_dssp HHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCC
T ss_pred HHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCC
Confidence 88889999998 999999999999999999999999999999999999999988652 799999999998 5666
Q ss_pred CCEEEeC
Q 039903 227 GDAILIK 233 (233)
Q Consensus 227 ~D~~~lk 233 (233)
+|+|+++
T Consensus 245 ~D~~~~~ 251 (353)
T 4a6d_A 245 ADLYILA 251 (353)
T ss_dssp CSEEEEE
T ss_pred ceEEEee
Confidence 8999985
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=1.8e-41 Score=295.32 Aligned_cols=232 Identities=46% Similarity=0.781 Sum_probs=202.1
Q ss_pred CcccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCC-CCCCChhhHHHHHHHHhcCCceeeeccCC--C--
Q 039903 1 MQPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPS-SNPNAAVMLDRILRLLVTHRVLRCTSAGD--D-- 75 (233)
Q Consensus 1 ~~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~-~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~-- 75 (233)
+++++|++.+++|++|++|||||+|.+.| ++|+|++|||+++++ .+|.++..++||||+|++.|+|++...++ +
T Consensus 25 ~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~ 103 (364)
T 3p9c_A 25 LQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRL 103 (364)
T ss_dssp HHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCE
T ss_pred HHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCc
Confidence 36889999999999999999999999853 148999999999995 22223349999999999999999862100 1
Q ss_pred CCceeccHhhhHhhcCCCCCCccchhccccC-----chhhHHHHHHcCCcchhhhhCCccccccccCchHHHHHHHHHHh
Q 039903 76 QRLYGLAHVAKYFVLNRDGVSLCPSRPWLET-----KPYEIYDAVLEGGISFNKVHGTGFYEYAGNDFRFNGVFNKAMLN 150 (233)
Q Consensus 76 ~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~-----~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~ 150 (233)
+++|++|+.++.|+.+.++.++++++.+..+ .|.+|++++++|+++|+..+|.++|+|+.++|+..+.|+++|..
T Consensus 104 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 183 (364)
T 3p9c_A 104 SRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKN 183 (364)
T ss_dssp EEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHHH
Confidence 4789999999998876543578888765433 89999999999999999999999999999999999999999999
Q ss_pred cchhcHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCCCCceEEecCcCCCCCCCCEE
Q 039903 151 HTSIVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSYSGVKHIGGIMLERIPKGDAI 230 (233)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~f~~~P~~D~~ 230 (233)
.+....+.+++.+++|++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|||+++|.+|+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v 263 (364)
T 3p9c_A 184 HSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTI 263 (364)
T ss_dssp HHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEE
T ss_pred hhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEE
Confidence 88887788888887688889999999999999999999999999999999999999998899999999999999988999
Q ss_pred EeC
Q 039903 231 LIK 233 (233)
Q Consensus 231 ~lk 233 (233)
+++
T Consensus 264 ~~~ 266 (364)
T 3p9c_A 264 LMK 266 (364)
T ss_dssp EEE
T ss_pred Eeh
Confidence 874
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=2.6e-41 Score=294.68 Aligned_cols=233 Identities=49% Similarity=0.801 Sum_probs=202.4
Q ss_pred CcccccchHHHHHHHHHhhChhHHHHhc-CCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC-C---
Q 039903 1 MQPAMSIVLPAAMQAASELGVFEIIAKA-GPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD-D--- 75 (233)
Q Consensus 1 ~~~~~~~~~s~~L~~a~~lglfd~L~~~-~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~-~--- 75 (233)
++++.|++.+++|++|++|||||+|++. |+++|+|++|||++++..+|.+++.++||||+|++.|+|++...++ .
T Consensus 26 ~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~ 105 (368)
T 3reo_A 26 MQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKV 105 (368)
T ss_dssp HHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCcc
Confidence 3678999999999999999999999986 5446899999999998322223459999999999999999852100 1
Q ss_pred CCceeccHhhhHhhcCCCCCCccchhccccC-----chhhHHHHHHcCCcchhhhhCCccccccccCchHHHHHHHHHHh
Q 039903 76 QRLYGLAHVAKYFVLNRDGVSLCPSRPWLET-----KPYEIYDAVLEGGISFNKVHGTGFYEYAGNDFRFNGVFNKAMLN 150 (233)
Q Consensus 76 ~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~-----~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~ 150 (233)
+++|++|+.++.|+.+..+.++++++.+..+ .|.+|++++++|+++|+..+|.++|+|+.++|+..+.|+++|..
T Consensus 106 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 185 (368)
T 3reo_A 106 ERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSS 185 (368)
T ss_dssp EEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHHH
T ss_pred cceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHHh
Confidence 3789999999999876543578888765433 89999999999999999999999999999999999999999999
Q ss_pred cchhcHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCCCCceEEecCcCCCCCCCCEE
Q 039903 151 HTSIVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSYSGVKHIGGIMLERIPKGDAI 230 (233)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~f~~~P~~D~~ 230 (233)
.+....+.+++.+++|++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|||+++|.+|+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v 265 (368)
T 3reo_A 186 NSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAI 265 (368)
T ss_dssp HHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEE
T ss_pred hhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEE
Confidence 88887788888887688889999999999999999999999999999999999999998899999999999999988999
Q ss_pred EeC
Q 039903 231 LIK 233 (233)
Q Consensus 231 ~lk 233 (233)
+++
T Consensus 266 ~~~ 268 (368)
T 3reo_A 266 FIK 268 (368)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 4
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=2.3e-39 Score=278.37 Aligned_cols=219 Identities=21% Similarity=0.310 Sum_probs=197.8
Q ss_pred CcccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCcee
Q 039903 1 MQPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYG 80 (233)
Q Consensus 1 ~~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~ 80 (233)
++++.||+.+++|++|++|||||.|.+ ||+|++|||+++++ +++.++||||+|++.|+++++ ++++|+
T Consensus 10 ~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~----~~~~y~ 77 (332)
T 3i53_A 10 LRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD----GQGVYG 77 (332)
T ss_dssp HHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----TTSBEE
T ss_pred HHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec----CCCeEE
Confidence 367899999999999999999999986 69999999999999 999999999999999999997 579999
Q ss_pred ccHhhhHhhcCCCCCCccchhcccc------CchhhHHHHHHcCCcchhhhhCCccccccccCchHHHHHHHHHHhcchh
Q 039903 81 LAHVAKYFVLNRDGVSLCPSRPWLE------TKPYEIYDAVLEGGISFNKVHGTGFYEYAGNDFRFNGVFNKAMLNHTSI 154 (233)
Q Consensus 81 lt~~s~~l~~~~~~~~~~~~~~~~~------~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~ 154 (233)
+|+.++.|..+++ .++..++.+.. ..|.+|++++++|+++|+..+|.++|+|+.++|+..+.|+++|...+..
T Consensus 78 ~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~ 156 (332)
T 3i53_A 78 LTEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLEL 156 (332)
T ss_dssp ECTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cCHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHh
Confidence 9999999977655 47777776543 3689999999999999999999899999999999999999999998877
Q ss_pred cHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCCCCCC-
Q 039903 155 VTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLERIPK- 226 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~~~P~- 226 (233)
..+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|++++.+++. +||+++.+|+++++|.
T Consensus 157 ~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~ 235 (332)
T 3i53_A 157 DYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAG 235 (332)
T ss_dssp HHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCS
T ss_pred hHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCC
Confidence 7777788887 888899999999999999999999999999999999999888752 7899999999998995
Q ss_pred CCEEEeC
Q 039903 227 GDAILIK 233 (233)
Q Consensus 227 ~D~~~lk 233 (233)
.|+|+++
T Consensus 236 ~D~v~~~ 242 (332)
T 3i53_A 236 AGGYVLS 242 (332)
T ss_dssp CSEEEEE
T ss_pred CcEEEEe
Confidence 5999873
No 5
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=3.5e-39 Score=279.14 Aligned_cols=217 Identities=21% Similarity=0.296 Sum_probs=196.1
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
+++.|++.+++|++|++|||||.|.+ +|+|++|||+++++ +++.++||||+|++.|+|++. +++|++
T Consensus 28 ~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~-----~~~y~~ 94 (348)
T 3lst_A 28 EEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRES-----DGRFAL 94 (348)
T ss_dssp HHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec-----CCEEec
Confidence 57899999999999999999999986 69999999999999 999999999999999999993 789999
Q ss_pred cHhhhHhhcCCCCCCccchhccccC-----chhhHHHHHHcCCcchhhhhCCccccccccCchHHHHHHHHHHhcchhcH
Q 039903 82 AHVAKYFVLNRDGVSLCPSRPWLET-----KPYEIYDAVLEGGISFNKVHGTGFYEYAGNDFRFNGVFNKAMLNHTSIVT 156 (233)
Q Consensus 82 t~~s~~l~~~~~~~~~~~~~~~~~~-----~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~ 156 (233)
|+.|+.|.++++ .++.+++.+..+ .|.+|++++++|+++|+..+|.++|+|+.++|+..+.|+++|...+....
T Consensus 95 t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 173 (348)
T 3lst_A 95 TDKGAALRSDSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEH 173 (348)
T ss_dssp CTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTH
T ss_pred CHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhH
Confidence 999999977665 478887765433 78999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccC-----CCCceEEecCcCCCCCCCCEEE
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSS-----YSGVKHIGGIMLERIPKGDAIL 231 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~-----~~ri~~~~gD~f~~~P~~D~~~ 231 (233)
+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|+++..++. .+||+++.+|+++++|..|+|+
T Consensus 174 ~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~ 252 (348)
T 3lst_A 174 LILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHV 252 (348)
T ss_dssp HHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEE
T ss_pred HHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEE
Confidence 88999998 99999999999999999999999999999999999998873321 2689999999999899559998
Q ss_pred eC
Q 039903 232 IK 233 (233)
Q Consensus 232 lk 233 (233)
++
T Consensus 253 ~~ 254 (348)
T 3lst_A 253 LK 254 (348)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 6
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=5.4e-39 Score=280.10 Aligned_cols=218 Identities=21% Similarity=0.325 Sum_probs=198.5
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCc-ee
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRL-YG 80 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~-y~ 80 (233)
+++.|++.+++|++|++|||||.|.+ +|+|++|||+++++ +++.++||||+|++.|+|+++ ++++ |+
T Consensus 44 ~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~----~~~~~y~ 111 (369)
T 3gwz_A 44 DILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL----GHDDLFA 111 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC----SSTTEEE
T ss_pred HHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe----CCCceEe
Confidence 57889999999999999999999996 69999999999999 999999999999999999997 5788 99
Q ss_pred ccHhhhHhhcCCCCCCccchhccccC-----chhhHHHHHHcCCcchhhhhCCccccccccCchHHHHHHHHHHhcchhc
Q 039903 81 LAHVAKYFVLNRDGVSLCPSRPWLET-----KPYEIYDAVLEGGISFNKVHGTGFYEYAGNDFRFNGVFNKAMLNHTSIV 155 (233)
Q Consensus 81 lt~~s~~l~~~~~~~~~~~~~~~~~~-----~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~ 155 (233)
+|+.++.|.++.+ .++..++.+..+ .|.+|++++++|+++|...+|.++|+|+.++|+..+.|+++|...+...
T Consensus 112 ~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 190 (369)
T 3gwz_A 112 QNALSAVLLPDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTE 190 (369)
T ss_dssp CCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhh
Confidence 9999999877665 467777765432 7899999999999999999998999999999999999999999998887
Q ss_pred HHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccC-------CCCceEEecCcCCCCCC-C
Q 039903 156 TNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSS-------YSGVKHIGGIMLERIPK-G 227 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~-------~~ri~~~~gD~f~~~P~-~ 227 (233)
.+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.+|+++++|. .
T Consensus 191 ~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~ 269 (369)
T 3gwz_A 191 AGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGA 269 (369)
T ss_dssp HHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSC
T ss_pred HHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCc
Confidence 888999988 99999999999999999999999999999999999999988875 27899999999998996 5
Q ss_pred CEEEeC
Q 039903 228 DAILIK 233 (233)
Q Consensus 228 D~~~lk 233 (233)
|+|+++
T Consensus 270 D~v~~~ 275 (369)
T 3gwz_A 270 DVYLIK 275 (369)
T ss_dssp SEEEEE
T ss_pred eEEEhh
Confidence 999873
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=6.6e-38 Score=272.03 Aligned_cols=227 Identities=25% Similarity=0.404 Sum_probs=197.8
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeec----c-CCC-
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTS----A-GDD- 75 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~----~-~~~- 75 (233)
+++.+++.+++|++|++|||||.|+..+ +|.|++|||+++++ +|.+++.++||||+|++.|+|++.. . ++.
T Consensus 16 ~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~ 92 (358)
T 1zg3_A 16 KHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEE 92 (358)
T ss_dssp HHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEecccccccCCCC
Confidence 4677999999999999999999999853 48999999999999 3334889999999999999999851 0 000
Q ss_pred CCceeccHhhhHhhcCCCCCCccchhccccC-----chhhHHHHHHcC--CcchhhhhCCccccccccCchHHH--HHHH
Q 039903 76 QRLYGLAHVAKYFVLNRDGVSLCPSRPWLET-----KPYEIYDAVLEG--GISFNKVHGTGFYEYAGNDFRFNG--VFNK 146 (233)
Q Consensus 76 ~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~-----~~~~L~~~l~~g--~~~~~~~~g~~~~~~~~~~~~~~~--~f~~ 146 (233)
+++|++|+.++.|+++++ .++++++.+..+ .|.+|++++++| .++|+..+|.++|+|+.++|+..+ .|++
T Consensus 93 ~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~ 171 (358)
T 1zg3_A 93 EIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQD 171 (358)
T ss_dssp EEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHH
T ss_pred CCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHH
Confidence 479999999998887765 478888776542 789999999998 788998899999999999999999 9999
Q ss_pred HHHhcchhcHHHHHHhcc-cccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCCCCceEEecCcCCCCC
Q 039903 147 AMLNHTSIVTNRIIDSSK-GFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSYSGVKHIGGIMLERIP 225 (233)
Q Consensus 147 am~~~~~~~~~~~~~~~~-~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~f~~~P 225 (233)
+|...+.... .+++.++ +|++..+|||||||+|.++..+++++|+++++++|+|++++.+++.++|+++.+|+++++|
T Consensus 172 ~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~ 250 (358)
T 1zg3_A 172 AMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIP 250 (358)
T ss_dssp HHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCC
T ss_pred HHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCC
Confidence 9999887766 7888883 3888899999999999999999999999999999999999999887789999999999888
Q ss_pred CCCEEEeC
Q 039903 226 KGDAILIK 233 (233)
Q Consensus 226 ~~D~~~lk 233 (233)
.+|+|+++
T Consensus 251 ~~D~v~~~ 258 (358)
T 1zg3_A 251 SADAVLLK 258 (358)
T ss_dssp CCSEEEEE
T ss_pred CceEEEEc
Confidence 78999873
No 8
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=7.3e-38 Score=269.01 Aligned_cols=215 Identities=23% Similarity=0.301 Sum_probs=194.5
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
+++.|++.+++|+++++||||+.|.+ +|.|++|||+++++ +++.++||||+|++.|+|++. +++.|++
T Consensus 14 ~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~----~~~~y~~ 81 (334)
T 2ip2_A 14 QVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD----TRDGYAN 81 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec----CCCeEec
Confidence 56789999999999999999999986 69999999999999 999999999999999999997 5689999
Q ss_pred cHhhhHhhcCCCCCCccchhccccC----chhhHHHHHHcCCcchhhhhCCccccccccCchHHHHHHHHHHhcchhcHH
Q 039903 82 AHVAKYFVLNRDGVSLCPSRPWLET----KPYEIYDAVLEGGISFNKVHGTGFYEYAGNDFRFNGVFNKAMLNHTSIVTN 157 (233)
Q Consensus 82 t~~s~~l~~~~~~~~~~~~~~~~~~----~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~~ 157 (233)
|+.++.|. +++ .++..++.+..+ .|.+|++++++++++|+..+|.++|+|+.++|+..+.|+++| ..+....+
T Consensus 82 t~~s~~l~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~ 158 (334)
T 2ip2_A 82 TPTSHLLR-DVE-GSFRDMVLFYGEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFH 158 (334)
T ss_dssp CHHHHTTS-SST-TCSHHHHHHHTTHHHHHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHH
T ss_pred CHHHHHHh-CCC-ccHHHHHHHhcCchhhHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHH
Confidence 99999888 654 478888766543 799999999999999998899999999999999999999999 88777778
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCCCCCCC-CE
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLERIPKG-DA 229 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~~~P~~-D~ 229 (233)
.+++.++ |++ .+|+|||||+|.++..+++++|+++++++|+|++++.+++. +||+++.+|+++++|.. |+
T Consensus 159 ~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~ 236 (334)
T 2ip2_A 159 EIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDI 236 (334)
T ss_dssp HHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSE
T ss_pred HHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCE
Confidence 8888887 888 99999999999999999999999999999998888887652 68999999999988874 99
Q ss_pred EEeC
Q 039903 230 ILIK 233 (233)
Q Consensus 230 ~~lk 233 (233)
|+++
T Consensus 237 v~~~ 240 (334)
T 2ip2_A 237 YLLS 240 (334)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9863
No 9
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=1.3e-37 Score=271.59 Aligned_cols=230 Identities=40% Similarity=0.670 Sum_probs=186.8
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCC---CCHHHHHHhCCCC--CCCChhhHHHHHHHHhcCCceeeecc--CC
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAK---ISAVEIAAQMPSS--NPNAAVMLDRILRLLVTHRVLRCTSA--GD 74 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~---~t~~elA~~~~~~--~~~~~~~l~rlL~~L~~~gll~~~~~--~~ 74 (233)
+++.|++.+++|++|++|||||.|++.| +| +|++|||++++++ +|.+++.++||||+|++.|+|++... ++
T Consensus 30 ~l~~~~~~~~~l~~a~~lgif~~L~~~g--~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~ 107 (372)
T 1fp1_D 30 VLTTNLVYPAVLNAAIDLNLFEIIAKAT--PPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIED 107 (372)
T ss_dssp HHHHTTHHHHHHHHHHHTTHHHHHHTCS--STTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHCChHHHHHhcC--CCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCC
Confidence 6788999999999999999999999852 15 9999999999982 44468899999999999999998510 00
Q ss_pred C--CCceeccHhhhHhhcCCCCCCccchhccccC-----chhhHHHHHHcC-CcchhhhhCCccccccccCchHHHHHHH
Q 039903 75 D--QRLYGLAHVAKYFVLNRDGVSLCPSRPWLET-----KPYEIYDAVLEG-GISFNKVHGTGFYEYAGNDFRFNGVFNK 146 (233)
Q Consensus 75 ~--~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~-----~~~~L~~~l~~g-~~~~~~~~g~~~~~~~~~~~~~~~~f~~ 146 (233)
+ .+.|++|+.++.|+.+++..++++++.+..+ .|.+|+++++++ +++|+..+|.++|+|+.++|+..+.|++
T Consensus 108 g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~ 187 (372)
T 1fp1_D 108 GGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNK 187 (372)
T ss_dssp SCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHH
T ss_pred CCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHH
Confidence 1 3699999999988877542368888776543 789999999999 8899998999999999999999999999
Q ss_pred HHHhcchhcHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCCCCceEEecCcCCCCCC
Q 039903 147 AMLNHTSIVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSYSGVKHIGGIMLERIPK 226 (233)
Q Consensus 147 am~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~f~~~P~ 226 (233)
+|...+....+.+++.+++|++..+|||||||+|.++..+++++|+++++++|+|++++.+++.++|+++.+|+++++|.
T Consensus 188 ~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~ 267 (372)
T 1fp1_D 188 SMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQ 267 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCC
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCC
Confidence 99998887778888888658888999999999999999999999999999999999999998888999999999998887
Q ss_pred CCEEEeC
Q 039903 227 GDAILIK 233 (233)
Q Consensus 227 ~D~~~lk 233 (233)
+|+|+++
T Consensus 268 ~D~v~~~ 274 (372)
T 1fp1_D 268 GDAMILK 274 (372)
T ss_dssp EEEEEEE
T ss_pred CCEEEEe
Confidence 8999863
No 10
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1.6e-37 Score=269.04 Aligned_cols=225 Identities=23% Similarity=0.421 Sum_probs=197.3
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
+++.+++.+++|+++++||||+.|...+ +|.|++|||+++++ +|.+++.++||||+|++.|+|++.. + +++.|++
T Consensus 22 ~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~-~-~~~~y~~ 96 (352)
T 1fp2_A 22 KHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT-K-EEESYAL 96 (352)
T ss_dssp HHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE-S-SSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEec-C-CCCeEeC
Confidence 4567999999999999999999999853 58999999999999 2223779999999999999999851 0 1589999
Q ss_pred cHhhhHhhcCCCCCCccchhccccC-----chhhHHHHHH-cCCcchhhhhCCccccccccCchHHHHHHHHHHhcchhc
Q 039903 82 AHVAKYFVLNRDGVSLCPSRPWLET-----KPYEIYDAVL-EGGISFNKVHGTGFYEYAGNDFRFNGVFNKAMLNHTSIV 155 (233)
Q Consensus 82 t~~s~~l~~~~~~~~~~~~~~~~~~-----~~~~L~~~l~-~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~ 155 (233)
|+.|+.|+.+++ .++++++.+..+ .|.+|+++++ +|+++|+..+|.++|+|+.++|+..+.|+++|...+...
T Consensus 97 t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 175 (352)
T 1fp2_A 97 TVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI 175 (352)
T ss_dssp CHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhh
Confidence 999998887765 478888766432 7899999999 888999999999999999999999999999999988776
Q ss_pred HHHHHHhcc-cccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCCCCceEEecCcCCCCCCCCEEEeC
Q 039903 156 TNRIIDSSK-GFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSYSGVKHIGGIMLERIPKGDAILIK 233 (233)
Q Consensus 156 ~~~~~~~~~-~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~f~~~P~~D~~~lk 233 (233)
.+. ++.++ +|++..+|||||||+|.++..+++++|+++++++|+|++++.+++.++|+++.+|+++++|..|+|+++
T Consensus 176 ~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~ 253 (352)
T 1fp2_A 176 NLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLK 253 (352)
T ss_dssp HHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEE
T ss_pred hhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEee
Confidence 666 77782 288889999999999999999999999999999999999999988778999999999988878999863
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=8.5e-36 Score=259.38 Aligned_cols=214 Identities=16% Similarity=0.194 Sum_probs=179.5
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
+++.|++.+++|+++++|||||.|++.+ +|+|++|||+++++ +++.++||||+|++.|+|++. +++|++
T Consensus 21 ~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~-----~~~y~~ 89 (363)
T 3dp7_A 21 EIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE-----EDRYVL 89 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE-----TTEEEE
T ss_pred HHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec-----CCEEec
Confidence 5788999999999999999999999843 69999999999999 999999999999999999884 689999
Q ss_pred cHhhhHhhcCCCCCCccchhcccc----CchhhHHHHHHcCCcchhhhhC--CccccccccCchHHH----HHHHHHHhc
Q 039903 82 AHVAKYFVLNRDGVSLCPSRPWLE----TKPYEIYDAVLEGGISFNKVHG--TGFYEYAGNDFRFNG----VFNKAMLNH 151 (233)
Q Consensus 82 t~~s~~l~~~~~~~~~~~~~~~~~----~~~~~L~~~l~~g~~~~~~~~g--~~~~~~~~~~~~~~~----~f~~am~~~ 151 (233)
|+.|+.|+++++ ...++.+.. ..|.+|++++++|++++...+| .++|+++.++|+..+ .|+++|...
T Consensus 90 t~~s~~L~~~~~---~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 166 (363)
T 3dp7_A 90 AKAGWFLLNDKM---ARVNMEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQ 166 (363)
T ss_dssp CHHHHHHHHCHH---HHHHHHHHHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCC
T ss_pred ccchHHhhCCCc---ccchheeecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhh
Confidence 999998887653 222222221 1889999999999999888888 689999999999776 366666654
Q ss_pred chhcHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCCC-
Q 039903 152 TSIVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLER- 223 (233)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~~- 223 (233)
. ...+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|++++.+++. +||+++.+|++++
T Consensus 167 ~---~~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 242 (363)
T 3dp7_A 167 S---FGKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRD 242 (363)
T ss_dssp C---CHHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSS
T ss_pred h---HHHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccC
Confidence 3 234555544 467799999999999999999999999999999999999888753 5899999999984
Q ss_pred --CCC-CCEEEeC
Q 039903 224 --IPK-GDAILIK 233 (233)
Q Consensus 224 --~P~-~D~~~lk 233 (233)
+|. .|+|+++
T Consensus 243 ~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 243 VPFPTGFDAVWMS 255 (363)
T ss_dssp CCCCCCCSEEEEE
T ss_pred CCCCCCcCEEEEe
Confidence 675 4999873
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=2e-35 Score=257.38 Aligned_cols=217 Identities=17% Similarity=0.241 Sum_probs=194.9
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCC--ce
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQR--LY 79 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~--~y 79 (233)
+++.+++.+++|++++++|||+.|.. +|.|++|||+++++ +++.++||||+|++.|+|++. +++ .|
T Consensus 22 ~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~----~~~~~~y 89 (374)
T 1qzz_A 22 KNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG----EKQGRPL 89 (374)
T ss_dssp HTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC----CC-CCCC
T ss_pred HHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe----CCCCeEE
Confidence 57899999999999999999999965 69999999999999 999999999999999999986 456 99
Q ss_pred eccHhhhHhhcCCCCCCccchhcccc------CchhhHHHHHHcCCcchhhhhCCccccccccCchHHHHHHHHHHhcch
Q 039903 80 GLAHVAKYFVLNRDGVSLCPSRPWLE------TKPYEIYDAVLEGGISFNKVHGTGFYEYAGNDFRFNGVFNKAMLNHTS 153 (233)
Q Consensus 80 ~lt~~s~~l~~~~~~~~~~~~~~~~~------~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~ 153 (233)
++|+.+..|..+++ .++..++.+.. ..|.+|++++++|+++|+..+|.++|+++..+|+..+.|+++|.....
T Consensus 90 ~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~ 168 (374)
T 1qzz_A 90 RPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDED 168 (374)
T ss_dssp EECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGST
T ss_pred EEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhH
Confidence 99999998887765 47777776553 468999999999999999999999999999999999999999998887
Q ss_pred hcHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCCCCCC
Q 039903 154 IVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLERIPK 226 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~~~P~ 226 (233)
...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++. +||+++.+|+++++|.
T Consensus 169 ~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 247 (374)
T 1qzz_A 169 LAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPV 247 (374)
T ss_dssp TTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred hHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC
Confidence 77788888888 888899999999999999999999999999999998899887652 4899999999998888
Q ss_pred C-CEEEe
Q 039903 227 G-DAILI 232 (233)
Q Consensus 227 ~-D~~~l 232 (233)
. |+|++
T Consensus 248 ~~D~v~~ 254 (374)
T 1qzz_A 248 TADVVLL 254 (374)
T ss_dssp CEEEEEE
T ss_pred CCCEEEE
Confidence 5 99986
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=7.9e-35 Score=252.49 Aligned_cols=217 Identities=18% Similarity=0.286 Sum_probs=195.4
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
+++.|++.+++|++++++|||+.|.+ +|.|++|||+++++ +++.+.|+|++|++.|+|++. ++++|++
T Consensus 25 ~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~----~~g~y~~ 92 (360)
T 1tw3_A 25 IRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED----APGEFVP 92 (360)
T ss_dssp HHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----ETTEEEE
T ss_pred HHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec----CCCeEEe
Confidence 57789999999999999999999975 69999999999999 999999999999999999996 4789999
Q ss_pred cHhhhHhhcCCCCCCccchhcccc------CchhhHHHHHHcCCcchhhhhCCccccccccCchHHHHHHHHHHhcchhc
Q 039903 82 AHVAKYFVLNRDGVSLCPSRPWLE------TKPYEIYDAVLEGGISFNKVHGTGFYEYAGNDFRFNGVFNKAMLNHTSIV 155 (233)
Q Consensus 82 t~~s~~l~~~~~~~~~~~~~~~~~------~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~ 155 (233)
|+.+..|..+++ .++..++.+.. ..|.+|.+++++|+++|+..+|.++|+++..+|+....|+.+|...+...
T Consensus 93 t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~ 171 (360)
T 1tw3_A 93 TEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVA 171 (360)
T ss_dssp CTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTT
T ss_pred CHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 999998887765 47777765543 27899999999999999988999999999999999999999999888877
Q ss_pred HHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCCCCCCC-
Q 039903 156 TNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLERIPKG- 227 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~~~P~~- 227 (233)
.+.+++.++ +++..+|||||||+|.++..+++++|+++++.+|+|++++.++++ +||+++.+|+++++|..
T Consensus 172 ~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 250 (360)
T 1tw3_A 172 FDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKA 250 (360)
T ss_dssp THHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCE
T ss_pred HHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCc
Confidence 788889888 888899999999999999999999999999999998898887652 48999999999988885
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+|++
T Consensus 251 D~v~~ 255 (360)
T 1tw3_A 251 DAIIL 255 (360)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 99886
No 14
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=1.3e-33 Score=245.13 Aligned_cols=204 Identities=18% Similarity=0.263 Sum_probs=177.9
Q ss_pred ccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHh
Q 039903 5 MSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHV 84 (233)
Q Consensus 5 ~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~ 84 (233)
.|++.+++|+++++|||||.|.+ +|.|++|||+++++ +++.++||||+|++.|+|++. ++.|++|+.
T Consensus 40 ~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~-----~~~y~~t~~ 106 (359)
T 1x19_A 40 KGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-----DGKWSLTEF 106 (359)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee-----CCeEecCHH
Confidence 38999999999999999999987 59999999999999 999999999999999999996 569999997
Q ss_pred hh-HhhcCCCC--CCccchhccccC----chhhHHHHHHcCCcchhhhhCCccccccccCch---HHHHHHHHHHhcch-
Q 039903 85 AK-YFVLNRDG--VSLCPSRPWLET----KPYEIYDAVLEGGISFNKVHGTGFYEYAGNDFR---FNGVFNKAMLNHTS- 153 (233)
Q Consensus 85 s~-~l~~~~~~--~~~~~~~~~~~~----~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~---~~~~f~~am~~~~~- 153 (233)
+. .|.++++. .++++++.+... .|.+|+++++++.+ |+++.++|+ ..+.|.++|...+.
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~ 176 (359)
T 1x19_A 107 ADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVTREDNLYFEEIHRSNAK 176 (359)
T ss_dssp HHHHSSSSCSBTTBCCHHHHHHHHHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCSHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CcccccCchhhHHHHHHHHHHHHhccc
Confidence 55 55555430 367777765422 89999999998764 788888999 99999999999988
Q ss_pred hcHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCC-CCC
Q 039903 154 IVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLE-RIP 225 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~P 225 (233)
...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++ +||+++.+|+++ ++|
T Consensus 177 ~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 255 (359)
T 1x19_A 177 FAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 255 (359)
T ss_dssp HHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred hhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC
Confidence 77788889888 888899999999999999999999999999999999899888642 579999999998 677
Q ss_pred CCCEEEe
Q 039903 226 KGDAILI 232 (233)
Q Consensus 226 ~~D~~~l 232 (233)
.+|+|++
T Consensus 256 ~~D~v~~ 262 (359)
T 1x19_A 256 EADAVLF 262 (359)
T ss_dssp CCSEEEE
T ss_pred CCCEEEE
Confidence 7799986
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=2e-33 Score=241.07 Aligned_cols=210 Identities=17% Similarity=0.162 Sum_probs=185.7
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
+++.|++.+++|+++++||||+.|.+ +|.|++|||+++++ +++.++||||+|++.|+|++. +++|++
T Consensus 12 ~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~-----~~~y~~ 78 (335)
T 2r3s_A 12 NTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ-----AEGYRL 78 (335)
T ss_dssp HHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec-----CCEEec
Confidence 56789999999999999999999997 59999999999999 999999999999999999984 789999
Q ss_pred cHhh-hHhhcCCCCCCccchhccccC-----chhhHHHHHHcCCcchhhhhCCccccccccCchHHHHHHHHHHhcchhc
Q 039903 82 AHVA-KYFVLNRDGVSLCPSRPWLET-----KPYEIYDAVLEGGISFNKVHGTGFYEYAGNDFRFNGVFNKAMLNHTSIV 155 (233)
Q Consensus 82 t~~s-~~l~~~~~~~~~~~~~~~~~~-----~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~ 155 (233)
|+.+ ..|.++++ .++..++.+..+ .|.+|++++++++++|+ + |+++.++|+....|.+.|.......
T Consensus 79 t~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (335)
T 2r3s_A 79 TSDSAMFLDRQSK-FYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANP 151 (335)
T ss_dssp CHHHHHHTCTTST-TCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHH
T ss_pred CHHHHHHhccCCc-HHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHHHhhh
Confidence 9999 56766655 478888766532 78999999999988764 3 8888899999999999999988877
Q ss_pred HHHHHHhcccc--cCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCC-CCC
Q 039903 156 TNRIIDSSKGF--EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLE-RIP 225 (233)
Q Consensus 156 ~~~~~~~~~~~--~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~P 225 (233)
...+++.++ + ++..+|+|||||+|.++..+++++|+.+++++|++.+++.+++. +||+++.+|+++ ++|
T Consensus 152 ~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 230 (335)
T 2r3s_A 152 AQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYG 230 (335)
T ss_dssp HHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCC
Confidence 778888887 7 78899999999999999999999999999999999888877653 579999999998 777
Q ss_pred CC-CEEEe
Q 039903 226 KG-DAILI 232 (233)
Q Consensus 226 ~~-D~~~l 232 (233)
.+ |+|++
T Consensus 231 ~~~D~v~~ 238 (335)
T 2r3s_A 231 NDYDLVLL 238 (335)
T ss_dssp SCEEEEEE
T ss_pred CCCcEEEE
Confidence 75 99986
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=7e-33 Score=239.57 Aligned_cols=209 Identities=13% Similarity=0.154 Sum_probs=174.8
Q ss_pred cccccchHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 2 QPAMSIVLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 2 ~~~~~~~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
+++.|++.+++|++|++|||||.|.. |+|++|||+++++ +++.++||||+|++.|+|++. ++.|++
T Consensus 30 ~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~-----~~~y~~ 95 (352)
T 3mcz_A 30 KLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKE-----GDAFRN 95 (352)
T ss_dssp HHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEec-----CCeeec
Confidence 57889999999999999999999964 8999999999999 999999999999999999996 578999
Q ss_pred cHhhhHhh-cCCCCCCccchhcccc---CchhhHHHHHHcCCcc-hhhhhCCccccccccCchHHHHHHHHHHhcchhcH
Q 039903 82 AHVAKYFV-LNRDGVSLCPSRPWLE---TKPYEIYDAVLEGGIS-FNKVHGTGFYEYAGNDFRFNGVFNKAMLNHTSIVT 156 (233)
Q Consensus 82 t~~s~~l~-~~~~~~~~~~~~~~~~---~~~~~L~~~l~~g~~~-~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~ 156 (233)
|+.++.++ ++.+ .+++.++.+.. ..|.+|++++++|.+. |+.. .++..+|+..+.|+++|...... .
T Consensus 96 t~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~ 167 (352)
T 3mcz_A 96 TALTERYLTTTSA-DYIGPIVEHQYLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQP-M 167 (352)
T ss_dssp CHHHHHHHSTTCT-TCCHHHHHHHHTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-H
T ss_pred CHHHHhhccCCCh-hhHHHHHHHhHHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhhh-H
Confidence 99998655 4444 56777765432 2899999999998754 3322 12357899999999999984433 2
Q ss_pred HHHHHhcccccC-cceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCCC---CC
Q 039903 157 NRIIDSSKGFEQ-IKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLER---IP 225 (233)
Q Consensus 157 ~~~~~~~~~~~~-~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~~---~P 225 (233)
..+++.++ +++ ..+|||||||+|.++..+++++|+++++++|+|++++.+++. +||+++.+|+++. .|
T Consensus 168 ~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 246 (352)
T 3mcz_A 168 VDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG 246 (352)
T ss_dssp HHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT
T ss_pred HHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC
Confidence 47888888 877 899999999999999999999999999999999988877652 5899999999994 56
Q ss_pred CC-CEEEeC
Q 039903 226 KG-DAILIK 233 (233)
Q Consensus 226 ~~-D~~~lk 233 (233)
.+ |+|+++
T Consensus 247 ~~~D~v~~~ 255 (352)
T 3mcz_A 247 GAADVVMLN 255 (352)
T ss_dssp CCEEEEEEE
T ss_pred CCccEEEEe
Confidence 64 999863
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.45 E-value=6.6e-13 Score=115.42 Aligned_cols=178 Identities=10% Similarity=0.005 Sum_probs=114.4
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcCCCCCCccc
Q 039903 20 GVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLNRDGVSLCP 99 (233)
Q Consensus 20 glfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~ 99 (233)
++|..| . +|.|+.|||..+++ +++.+++||+.|++.|+++.. ++ |++|+.+..++..........
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~-----~~-~~lt~~~~~~l~~~~~~~~~~ 111 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE-----DG-VKLTEKGEELVAEYGIGKRYD 111 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS-----SS-SEECHHHHHHHHHHTCCCCCC
T ss_pred HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC-----CC-EEECHHHHHHHHhcCcccccc
Confidence 789999 4 48999999999999 999999999999999999874 35 999998776543211111111
Q ss_pred hh-cccc----------CchhhHHHHHHcCCcchhhhhCCccccccccCchHHHHHHHHHHhcchhcHHHHHHhcccccC
Q 039903 100 SR-PWLE----------TKPYEIYDAVLEGGISFNKVHGTGFYEYAGNDFRFNGVFNKAMLNHTSIVTNRIIDSSKGFEQ 168 (233)
Q Consensus 100 ~~-~~~~----------~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~ 168 (233)
.+ .... ..|..+.+.++....+ ...|+.....++. .....+ ..... . ...
T Consensus 112 ~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~l---------~~~~~-~-~~~ 172 (373)
T 2qm3_A 112 FTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP------LHEFDQAYVTPET--TVARVI---------LMHTR-G-DLE 172 (373)
T ss_dssp ------------CGGGHHHHHHHHHHHTTCCCC------CGGGTCCCBCHHH--HHHHHH---------HHHHT-T-CST
T ss_pred ccchhhcCCCcchhhhHHHHHHHHHHHhcCCcc------chhcCCeecCHHH--HHHHHH---------HHhhc-C-CCC
Confidence 11 0001 0233444444432211 1111110011111 111111 00111 1 123
Q ss_pred cceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCCC----C-CEEEe
Q 039903 169 IKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIPK----G-DAILI 232 (233)
Q Consensus 169 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P~----~-D~~~l 232 (233)
..+|+||| |+|.++..+++..|..+++.+|+ |.+++.++++ +||+++.+|+++++|. . |+|++
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence 57999999 99999999999999899999999 7788887763 4899999999986653 3 99986
No 18
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.72 E-value=1.1e-08 Score=81.70 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=53.3
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCcCC-CCCCC--CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
+...+|+|||||+|.++..+++++| +++.+|+ |++++.+++. ++|+++.+|+.+ ++|.+ |+++.
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 109 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIF 109 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEE
Confidence 3467999999999999999999988 7999998 6677777653 789999999998 66653 98874
No 19
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=98.70 E-value=5e-08 Score=80.56 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=55.1
Q ss_pred cCcceEEEecCCccHHHHHHHHHc--CCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-CCCCCCEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNY--LHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKGDAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~--P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~D~~~l 232 (233)
+...+|+|||||+|.++..+++++ |+++++.+|+ |..++.|++. .+|+++.+|+.+ +++..|++++
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~ 145 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVL 145 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccccccccee
Confidence 556899999999999999999985 6789999998 5678877642 589999999998 7776788764
No 20
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.63 E-value=1.3e-07 Score=75.88 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=58.9
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----CCceEEecCcCC-CCCCC-CEE
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----SGVKHIGGIMLE-RIPKG-DAI 230 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~P~~-D~~ 230 (233)
.++..+....+..+|||||||+|.++..+++++|..+++.+|+ |..++.+++. .+|+++.+|+.+ +.+.. |++
T Consensus 34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v 113 (234)
T 3dtn_A 34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMV 113 (234)
T ss_dssp HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEE
T ss_pred HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEE
Confidence 3444433124558999999999999999999999999999999 6677776542 489999999998 55543 988
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
+.
T Consensus 114 ~~ 115 (234)
T 3dtn_A 114 VS 115 (234)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 21
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.58 E-value=8.7e-08 Score=79.42 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=57.5
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHH-cCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCCC-
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISN-YLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPKG- 227 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~~- 227 (233)
.++..++ .....+|+|+|||+|.++..+++. +|..+++.+|+ |..++.++++ ++++++.+|+.+++|.+
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4555555 667789999999999999999998 79999999999 6677666532 58999999999977753
Q ss_pred -CEEEe
Q 039903 228 -DAILI 232 (233)
Q Consensus 228 -D~~~l 232 (233)
|+|++
T Consensus 180 fD~Vi~ 185 (275)
T 1yb2_A 180 YDAVIA 185 (275)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 98875
No 22
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.56 E-value=4.4e-08 Score=79.92 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=61.9
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHH-cCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISN-YLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPKG 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~~ 227 (233)
..++..++ .....+|+|+|||+|.++..+++. .|..+++.+|+ |+.++.|+++ +||+++.+|+.+.+|..
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555555 667789999999999999999999 89999999999 5677777653 56999999999987763
Q ss_pred --CEEEe
Q 039903 228 --DAILI 232 (233)
Q Consensus 228 --D~~~l 232 (233)
|++++
T Consensus 162 ~~D~v~~ 168 (255)
T 3mb5_A 162 NVDHVIL 168 (255)
T ss_dssp SEEEEEE
T ss_pred CcCEEEE
Confidence 98875
No 23
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.56 E-value=2.4e-07 Score=78.05 Aligned_cols=84 Identities=18% Similarity=0.122 Sum_probs=62.6
Q ss_pred HHhcchhcHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecC
Q 039903 148 MLNHTSIVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGI 219 (233)
Q Consensus 148 m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD 219 (233)
+..........+++.++......+|||||||.|.++..+++++ ..+++.+|+ |..++.++++ ++|+++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 3333333334555555435567899999999999999999986 678999998 5677777642 589999999
Q ss_pred cCC-CCCCC--CEEEe
Q 039903 220 MLE-RIPKG--DAILI 232 (233)
Q Consensus 220 ~f~-~~P~~--D~~~l 232 (233)
+.+ ++|.+ |+|+.
T Consensus 176 ~~~~~~~~~~fD~V~~ 191 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWN 191 (312)
T ss_dssp TTSCCCCTTCEEEEEE
T ss_pred hhcCCCCCCCEeEEEE
Confidence 998 77753 99874
No 24
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.56 E-value=6.7e-08 Score=77.99 Aligned_cols=66 Identities=14% Similarity=-0.003 Sum_probs=55.8
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC-------CCceEEecCcCCCCCC---CCEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY-------SGVKHIGGIMLERIPK---GDAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~-------~ri~~~~gD~f~~~P~---~D~~~l 232 (233)
++..+|+|||||+|.+++.+++.+|..+++..|.. ..++.|+++ +||+++.+|.++++|. .|++++
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Ivi 90 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITI 90 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEE
Confidence 34579999999999999999999999999999984 577777653 5899999999998773 488764
No 25
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=98.55 E-value=2.3e-07 Score=73.15 Aligned_cols=74 Identities=9% Similarity=0.062 Sum_probs=60.3
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCC---CC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIP---KG 227 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P---~~ 227 (233)
.++..++ .....+|+|||||+|.++..+++.+|..+++.+|+ |+.++.++++ ++++++.+|+.+.++ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 3455555 66778999999999999999999999999999998 6677777653 689999999987544 24
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|++++
T Consensus 110 D~i~~ 114 (204)
T 3e05_A 110 DRVFI 114 (204)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98875
No 26
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.55 E-value=8.9e-08 Score=75.68 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=57.8
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-CCCCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKG 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~ 227 (233)
..+++.++ .++. +|||||||+|.++..++++ |..+++.+|+ |..++.+++. ++++++.+|+.+ ++|.+
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 33444444 3443 9999999999999999998 8899999998 6677776653 589999999998 77753
Q ss_pred --CEEEe
Q 039903 228 --DAILI 232 (233)
Q Consensus 228 --D~~~l 232 (233)
|+|+.
T Consensus 111 ~~D~v~~ 117 (219)
T 3dlc_A 111 YADLIVS 117 (219)
T ss_dssp CEEEEEE
T ss_pred cccEEEE
Confidence 98875
No 27
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.54 E-value=1.9e-07 Score=74.22 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=54.5
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC-C--CCCC--CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE-R--IPKG--DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~--~P~~--D~~~l 232 (233)
...+++|||||+|.++..+++++|+.+++.+|+ +..++.++++ ++|+++.+|+.+ + +|.+ |++++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL 117 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence 457899999999999999999999999999998 5677776542 689999999987 4 5553 88874
No 28
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.51 E-value=4.1e-07 Score=74.58 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=59.8
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCCCCceEEecCcCC-CCCCC--CEEEe
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSYSGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
..+++.++ .....+|||||||+|.++..+++ |..+++.+|+ |..++.++...+++++.+|+.+ ++|.+ |+|+.
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 34555555 56778999999999999999998 7889999998 4578888777799999999988 77653 99875
No 29
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.49 E-value=2.1e-07 Score=73.94 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=61.7
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeec-hHHHhhccCC------CCceEEecCcCC-CCCCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE-RIPKG 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~P~~ 227 (233)
..+++.++ .....+|||||||+|.++..+++.. |..+++.+|. +..++.+++. ++|+++.+|+.+ +++.+
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 45666666 6777899999999999999999997 8899999998 5677777653 589999999988 67664
Q ss_pred --CEEEe
Q 039903 228 --DAILI 232 (233)
Q Consensus 228 --D~~~l 232 (233)
|+|+.
T Consensus 106 ~fD~v~~ 112 (219)
T 3dh0_A 106 TVDFIFM 112 (219)
T ss_dssp CEEEEEE
T ss_pred CeeEEEe
Confidence 99875
No 30
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.48 E-value=4.7e-07 Score=71.97 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=54.1
Q ss_pred HHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechH-HHhh----ccC------CCCceEEecCcCC-CCCCC
Q 039903 160 IDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSH-VIQD----SSS------YSGVKHIGGIMLE-RIPKG 227 (233)
Q Consensus 160 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~~~----a~~------~~ri~~~~gD~f~-~~P~~ 227 (233)
+..++ .....+|||||||+|.++..+++++|..+++.+|+.+ .++. +++ .++|+++.+|+.+ +++.+
T Consensus 20 ~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 98 (218)
T 3mq2_A 20 FEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSG 98 (218)
T ss_dssp HHHHH-TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCC
T ss_pred HHHhh-ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCC
Confidence 34444 4566899999999999999999999999999999854 3432 322 2589999999998 65543
Q ss_pred -CEEE
Q 039903 228 -DAIL 231 (233)
Q Consensus 228 -D~~~ 231 (233)
|.+.
T Consensus 99 ~d~v~ 103 (218)
T 3mq2_A 99 VGELH 103 (218)
T ss_dssp EEEEE
T ss_pred CCEEE
Confidence 5554
No 31
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.47 E-value=2.6e-07 Score=75.49 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=59.7
Q ss_pred hcHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC-CCC
Q 039903 154 IVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE-RIP 225 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~P 225 (233)
.....+++.++ .....+|||||||+|.++..++++.+ +++.+|+ |..++.+++. ++|+++.+|+.+ ++|
T Consensus 24 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 24 SDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp CCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence 33456666666 66778999999999999999999986 7999998 5677766542 679999999988 777
Q ss_pred CC--CEEEe
Q 039903 226 KG--DAILI 232 (233)
Q Consensus 226 ~~--D~~~l 232 (233)
.+ |+|+.
T Consensus 101 ~~~fD~V~~ 109 (260)
T 1vl5_A 101 DERFHIVTC 109 (260)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 53 99874
No 32
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.46 E-value=1.6e-07 Score=75.95 Aligned_cols=66 Identities=15% Similarity=0.014 Sum_probs=55.3
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC-------CCceEEecCcCCCCCC---CCEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY-------SGVKHIGGIMLERIPK---GDAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~-------~ri~~~~gD~f~~~P~---~D~~~l 232 (233)
++..+|+|||||+|.+++.+++..|..+++..|+. ..++.|+++ +||+++.+|.++.++. .|++++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivi 96 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITI 96 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEE
Confidence 44589999999999999999999999999999984 577777653 6899999999996553 498764
No 33
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.46 E-value=4.8e-07 Score=74.30 Aligned_cols=74 Identities=12% Similarity=0.223 Sum_probs=59.5
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-CCCCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKG 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~ 227 (233)
..+++.++ .....+|||||||.|.++..+++++ ..+++.+|+ +..++.+++. ++|+++.+|+.+ ++|.+
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 45666666 6677899999999999999999987 689999998 5566666542 589999999998 77753
Q ss_pred --CEEEe
Q 039903 228 --DAILI 232 (233)
Q Consensus 228 --D~~~l 232 (233)
|+|+.
T Consensus 129 ~fD~v~~ 135 (273)
T 3bus_A 129 SFDAVWA 135 (273)
T ss_dssp CEEEEEE
T ss_pred CccEEEE
Confidence 98874
No 34
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=98.46 E-value=4.2e-07 Score=73.90 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=57.2
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-CCCCC--
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKG-- 227 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~-- 227 (233)
++..+...+...+|||||||+|.++..+++++|. +++.+|+ |..++.+++. +||+++.+|+.+ ++|.+
T Consensus 37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 115 (257)
T 3f4k_A 37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEEL 115 (257)
T ss_dssp HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCE
T ss_pred HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCE
Confidence 4444433556679999999999999999999987 9999998 5577766542 579999999977 66653
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+|+.
T Consensus 116 D~v~~ 120 (257)
T 3f4k_A 116 DLIWS 120 (257)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99874
No 35
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.46 E-value=1.4e-07 Score=74.26 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=53.0
Q ss_pred cceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCCC-C-CEEEe
Q 039903 169 IKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIPK-G-DAILI 232 (233)
Q Consensus 169 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P~-~-D~~~l 232 (233)
..+|+|||||+|.++..+++.+|..+++.+|. |..++.++++ ++|+++.+|+.+..|. . |+++.
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~ 138 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVIS 138 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEEC
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEE
Confidence 57999999999999999999999999999998 5577766542 4599999999984444 3 98874
No 36
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.45 E-value=9.8e-07 Score=69.69 Aligned_cols=74 Identities=11% Similarity=0.166 Sum_probs=57.5
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC--CCceEEecCcCCCCCCC--CEEE
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY--SGVKHIGGIMLERIPKG--DAIL 231 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~--~ri~~~~gD~f~~~P~~--D~~~ 231 (233)
..+++.+.......+|||||||+|.++..++++ ..+++.+|+ |..++.+++. ++++++.+|+.+..|.+ |+++
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 344554443455679999999999999999998 568999998 5677777653 68999999999865543 9887
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
.
T Consensus 113 ~ 113 (218)
T 3ou2_A 113 F 113 (218)
T ss_dssp E
T ss_pred E
Confidence 5
No 37
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.44 E-value=4.3e-07 Score=74.02 Aligned_cols=74 Identities=19% Similarity=0.378 Sum_probs=59.7
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----CCceEEecCcCC-CCCCC--C
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----SGVKHIGGIMLE-RIPKG--D 228 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~P~~--D 228 (233)
..+++.++ .....+|||||||+|.++..+++++ ..+++.+|+ |..++.+++. ++|+++.+|+.+ ++|.+ |
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 34455555 6667899999999999999999998 789999998 5577776653 689999999998 77653 9
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
+|+.
T Consensus 123 ~v~~ 126 (266)
T 3ujc_A 123 LIYS 126 (266)
T ss_dssp EEEE
T ss_pred EEeH
Confidence 9875
No 38
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.44 E-value=3.2e-07 Score=73.20 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=53.0
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccC------CCCceEEecCcCC-C--CCCC--CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSS------YSGVKHIGGIMLE-R--IPKG--DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~------~~ri~~~~gD~f~-~--~P~~--D~~~l 232 (233)
...+|||||||+|.++..+++.+|+.+++.+|+. ..++.|++ .++|+++.+|+.+ + +|.+ |.+++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence 4578999999999999999999999999999984 57766654 2689999999987 3 5553 77653
No 39
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.44 E-value=4.8e-07 Score=73.52 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=57.7
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC---CCceEEecCcCC-CCCCC--CEE
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY---SGVKHIGGIMLE-RIPKG--DAI 230 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~P~~--D~~ 230 (233)
.+.+.++ .....+|||||||+|.++..++++.+. +++.+|+ |..++.+++. .+|+++.+|+.+ ++|.+ |+|
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 3444444 345689999999999999999999775 8999998 5677777653 689999999987 66653 998
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
+.
T Consensus 113 ~~ 114 (253)
T 3g5l_A 113 LS 114 (253)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 40
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.43 E-value=4.9e-07 Score=75.30 Aligned_cols=74 Identities=14% Similarity=0.238 Sum_probs=58.8
Q ss_pred HHHHHhc----ccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-C
Q 039903 157 NRIIDSS----KGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-R 223 (233)
Q Consensus 157 ~~~~~~~----~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~ 223 (233)
..+++.+ . +....+|||||||.|.++..+++++ ..+++.+|+ |..++.+++. ++|+++.+|+.+ +
T Consensus 68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 4455555 4 6677899999999999999999987 458999998 4567766542 689999999998 7
Q ss_pred CCCC--CEEEe
Q 039903 224 IPKG--DAILI 232 (233)
Q Consensus 224 ~P~~--D~~~l 232 (233)
+|.+ |+|+.
T Consensus 146 ~~~~~fD~v~~ 156 (297)
T 2o57_A 146 CEDNSYDFIWS 156 (297)
T ss_dssp SCTTCEEEEEE
T ss_pred CCCCCEeEEEe
Confidence 7764 98875
No 41
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.43 E-value=6.3e-07 Score=74.38 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=49.2
Q ss_pred cCcceEEEecCCc---cHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----CCceEEecCcCC
Q 039903 167 EQIKQLVDVGGGL---GVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----SGVKHIGGIMLE 222 (233)
Q Consensus 167 ~~~~~vvDvGGG~---G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----~ri~~~~gD~f~ 222 (233)
.+..+|||||||+ |.++..+.+.+|+.+++.+|+ |.+++.+++. ++++++.+|+++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~ 139 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRD 139 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCC
Confidence 3568999999999 999888888999999999999 7788887652 789999999986
No 42
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.43 E-value=4.2e-07 Score=73.92 Aligned_cols=73 Identities=12% Similarity=0.227 Sum_probs=59.7
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC-CCCceEEecCcCC-CCCCC--CEEEe
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS-YSGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
.+++.++ .....+|||||||+|.++..+++++|..+++.+|+ |..++.+++ .++++++.+|+.+ + |.+ |+|+.
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 4555555 56668999999999999999999999999999998 567777765 3789999999987 5 543 98875
No 43
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.43 E-value=2.1e-07 Score=75.93 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=55.2
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC-------CCceEEecCcCCCCCC---CCEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY-------SGVKHIGGIMLERIPK---GDAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~-------~ri~~~~gD~f~~~P~---~D~~~l 232 (233)
++..+|+|||||+|.+++.+++..|..+++..|+. ..++.|+++ +||++..+|.++.++. .|++++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivi 96 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVI 96 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEE
Confidence 44589999999999999999999999999999984 577777653 6899999999996553 488764
No 44
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.43 E-value=4.2e-07 Score=74.85 Aligned_cols=67 Identities=15% Similarity=0.338 Sum_probs=56.9
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC-CCCCC--CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
+....+|||||||+|.++..+++++|..+++.+|+ |..++.+++. ++++++.+|+.+ ++|.+ |+|+.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV 111 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEE
Confidence 56678999999999999999999999999999998 5677766542 689999999998 66653 99875
No 45
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=98.43 E-value=4.5e-07 Score=74.40 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=57.6
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-CCCCC--
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKG-- 227 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~-- 227 (233)
++..++......+|||||||+|.++..+++. |..+++.+|+ |..++.+++. ++|+++.+|+.+ ++|.+
T Consensus 37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (267)
T 3kkz_A 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEEL 115 (267)
T ss_dssp HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCE
Confidence 3333332456789999999999999999998 8899999998 5677766542 679999999987 66653
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+|+.
T Consensus 116 D~i~~ 120 (267)
T 3kkz_A 116 DLIWS 120 (267)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99875
No 46
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.40 E-value=2.4e-07 Score=75.39 Aligned_cols=74 Identities=11% Similarity=0.157 Sum_probs=60.4
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHH-cCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-CCCCC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISN-YLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKG 227 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~ 227 (233)
.++..++ .....+|||+|||+|.++..+++. .|..+++.+|. |..++.++++ ++|+++.+|+.+ ++|.+
T Consensus 87 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 87 AMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred HHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence 4556555 677789999999999999999999 78899999998 6677766542 689999999998 47753
Q ss_pred --CEEEe
Q 039903 228 --DAILI 232 (233)
Q Consensus 228 --D~~~l 232 (233)
|++++
T Consensus 166 ~~D~v~~ 172 (258)
T 2pwy_A 166 AYDGVAL 172 (258)
T ss_dssp CEEEEEE
T ss_pred CcCEEEE
Confidence 98875
No 47
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.40 E-value=3.9e-07 Score=76.04 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=53.8
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCC-C---CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPK-G---DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~-~---D~~~l 232 (233)
...+|+|||||+|.++..+++. |+.+++.+|+ +..++.|+++ +||+++.+|++++++. - |+|+.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivs 198 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILS 198 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEE
Confidence 4568999999999999999999 9999999998 6688877653 4799999999986543 4 88864
No 48
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.40 E-value=8e-07 Score=72.20 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=57.8
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-CCCCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKG 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~ 227 (233)
..+++.++ .....+|||||||+|.++..+++++ ..+++.+|+ |..++.+++. ++|+++.+|+.+ +.+..
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 34555555 6677899999999999999999988 678999998 5677766542 589999999988 44333
Q ss_pred -CEEEe
Q 039903 228 -DAILI 232 (233)
Q Consensus 228 -D~~~l 232 (233)
|+|+.
T Consensus 104 fD~V~~ 109 (256)
T 1nkv_A 104 CDVAAC 109 (256)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 98874
No 49
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.40 E-value=4.5e-07 Score=79.16 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=58.5
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccC---------------CCCceEEecCc
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSS---------------YSGVKHIGGIM 220 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~---------------~~ri~~~~gD~ 220 (233)
..+++.+. .....+|+|||||+|..+..++..++.-+++.+|+. ..++.|++ .++|+++.||+
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 34555555 667789999999999999999999887789999995 45555432 26899999999
Q ss_pred CC-CCC----CCCEEEe
Q 039903 221 LE-RIP----KGDAILI 232 (233)
Q Consensus 221 f~-~~P----~~D~~~l 232 (233)
++ +++ .+|+|++
T Consensus 242 ~~lp~~d~~~~aDVVf~ 258 (438)
T 3uwp_A 242 LSEEWRERIANTSVIFV 258 (438)
T ss_dssp TSHHHHHHHHTCSEEEE
T ss_pred cCCccccccCCccEEEE
Confidence 98 553 4699875
No 50
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.39 E-value=7e-07 Score=74.60 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=37.2
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS 209 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~ 209 (233)
....+|||||||+|.++..+++++|..+++.+|+ +..++.|++
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~ 88 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQ 88 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHH
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3568999999999999999999999999999999 456766654
No 51
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.39 E-value=4.5e-07 Score=72.09 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=54.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----------CCceEEecCcCC-CCCC--CCEEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----------SGVKHIGGIMLE-RIPK--GDAIL 231 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~-~~P~--~D~~~ 231 (233)
.+..+|||||||+|.++..+++++|..+++.+|+ |..++.+++. ++|+++.+|+.. +.+. .|+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4567999999999999999999999999999998 5677777642 289999999965 4433 39987
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
.
T Consensus 108 ~ 108 (219)
T 3jwg_A 108 V 108 (219)
T ss_dssp E
T ss_pred E
Confidence 4
No 52
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.39 E-value=5.4e-07 Score=71.57 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=56.3
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----------CCceEEecCcCC-CCC
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----------SGVKHIGGIMLE-RIP 225 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~-~~P 225 (233)
+++.++ ..+..+|||||||+|.++..+++++|..+++.+|+ |..++.+++. ++|+++.+|+.. +.+
T Consensus 21 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (217)
T 3jwh_A 21 VVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR 99 (217)
T ss_dssp HHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG
T ss_pred HHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc
Confidence 333333 34567999999999999999999999999999998 5577766542 289999999865 444
Q ss_pred C--CCEEEe
Q 039903 226 K--GDAILI 232 (233)
Q Consensus 226 ~--~D~~~l 232 (233)
. .|+++.
T Consensus 100 ~~~fD~v~~ 108 (217)
T 3jwh_A 100 FHGYDAATV 108 (217)
T ss_dssp GCSCSEEEE
T ss_pred CCCcCEEee
Confidence 3 399874
No 53
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.39 E-value=6e-07 Score=74.29 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=55.5
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCCC-C-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIPK-G-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P~-~-D~~~l 232 (233)
....+|+|||||+|.++..+++.+|+.+++.+|. |..++.++++ ++|+++.+|+++++|. . |+|+.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~ 182 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVS 182 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEE
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEE
Confidence 3457899999999999999999999999999998 5677777653 5799999999997654 3 98875
No 54
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.38 E-value=4e-07 Score=69.71 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=56.6
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC-------CCceEEecCcCCCCCC----
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY-------SGVKHIGGIMLERIPK---- 226 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~-------~ri~~~~gD~f~~~P~---- 226 (233)
+++.++ .....+|+|||||+|.++..+++++|..+++.+|+. ..++.++++ +++ ++.+|..+.+|.
T Consensus 17 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~ 94 (178)
T 3hm2_A 17 AISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDN 94 (178)
T ss_dssp HHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSC
T ss_pred HHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCC
Confidence 444455 566689999999999999999999999999999984 577766542 378 888998875543
Q ss_pred CCEEEe
Q 039903 227 GDAILI 232 (233)
Q Consensus 227 ~D~~~l 232 (233)
.|++++
T Consensus 95 ~D~i~~ 100 (178)
T 3hm2_A 95 PDVIFI 100 (178)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 398875
No 55
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.2e-06 Score=73.24 Aligned_cols=66 Identities=23% Similarity=0.226 Sum_probs=55.2
Q ss_pred cCcceEEEecCCccHHHHHHHHHc-CCCcEEEeec-hHHHhhccC--------CCCceEEecCcCC-CCCC------C--
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDL-SHVIQDSSS--------YSGVKHIGGIMLE-RIPK------G-- 227 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~a~~--------~~ri~~~~gD~f~-~~P~------~-- 227 (233)
....+|||||||+|.++..+++++ |..+++.+|+ |..++.+++ .++|+++.+|+.+ +++. +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 466899999999999999999997 8999999998 557777754 3689999999998 6554 3
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+|+.
T Consensus 115 D~V~~ 119 (299)
T 3g5t_A 115 DMITA 119 (299)
T ss_dssp EEEEE
T ss_pred eEEeH
Confidence 88874
No 56
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.36 E-value=5.9e-07 Score=74.59 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=55.4
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCC-CcEEEeec-hHHHhhccCC-----CCceEEecCcCC-CCCCC-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLH-IKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~P~~-D~~~l 232 (233)
..+..+|||||||+|.++..+++.+|. .+++.+|+ |..++.+++. .+|+++.+|+.+ +.+.. |+|+.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~ 95 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAIC 95 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEE
Confidence 566789999999999999999999995 89999998 5567666542 389999999998 55554 98875
No 57
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=98.36 E-value=1.2e-07 Score=74.63 Aligned_cols=75 Identities=19% Similarity=0.126 Sum_probs=49.3
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCcCCCCCC-----
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLERIPK----- 226 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~P~----- 226 (233)
.+++.+....+..+|+|||||+|.++..+++.+|+.+++.+|+ |..++.++++ .+++++.+|++++++.
T Consensus 20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 99 (215)
T 4dzr_A 20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERG 99 (215)
T ss_dssp HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhcc
Confidence 3444443125678999999999999999999999999999999 5688877764 1789999999985552
Q ss_pred --CCEEEe
Q 039903 227 --GDAILI 232 (233)
Q Consensus 227 --~D~~~l 232 (233)
.|+++.
T Consensus 100 ~~fD~i~~ 107 (215)
T 4dzr_A 100 RPWHAIVS 107 (215)
T ss_dssp CCBSEEEE
T ss_pred CcccEEEE
Confidence 398875
No 58
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.36 E-value=9.4e-07 Score=72.27 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=53.2
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC-CCCceEEecCcCC-CCCCC-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS-YSGVKHIGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~gD~f~-~~P~~-D~~~l 232 (233)
++..+|||||||+|.++..++++.+ +++.+|+ |..++.+++ ..+|+++.+|+.+ +.+.. |+|+.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 116 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTC 116 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEE
Confidence 4568999999999999999999865 6899998 668887766 3689999999998 55544 99875
No 59
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.36 E-value=5.1e-07 Score=72.41 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=52.4
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCC----CCCC--CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLER----IPKG--DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~----~P~~--D~~~l 232 (233)
...+|||||||+|.++..+++++|+.+++.+|. +..++.++++ ++|+++.+|..+. +|.+ |.+++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 457999999999999999999999999999998 4566665432 5799999998762 5654 77654
No 60
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.35 E-value=8.1e-07 Score=77.05 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=59.6
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC---------CCceEEecCcCCCCCCC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY---------SGVKHIGGIMLERIPKG 227 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~---------~ri~~~~gD~f~~~P~~ 227 (233)
.+++.++ .....+|+|+|||+|.++..+++++|..+++.+|. +..++.++++ .+++++.+|+++++|.+
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 3455555 33448999999999999999999999999999998 5577777653 25888999999987763
Q ss_pred --CEEEe
Q 039903 228 --DAILI 232 (233)
Q Consensus 228 --D~~~l 232 (233)
|+|+.
T Consensus 292 ~fD~Ii~ 298 (375)
T 4dcm_A 292 RFNAVLC 298 (375)
T ss_dssp CEEEEEE
T ss_pred CeeEEEE
Confidence 99875
No 61
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=98.35 E-value=4.8e-07 Score=69.35 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=57.2
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCCC--CC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIPK--GD 228 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P~--~D 228 (233)
.+++.++ ..+..+|+|||||+|.++..+++ +..+++.+|. |..++.++++ ++++++.+|+.+++|. .|
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3444444 55667999999999999999999 8889999998 5577776653 6899999999986664 39
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
+++.
T Consensus 103 ~i~~ 106 (183)
T 2yxd_A 103 KAFI 106 (183)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 62
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.35 E-value=1.9e-06 Score=77.09 Aligned_cols=74 Identities=22% Similarity=0.202 Sum_probs=59.2
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCC-CCCCC-
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLE-RIPKG- 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~P~~- 227 (233)
..+++.+. ..+..+|+|||||+|.++..+++ .|..+++.+|+.+.++.|++. ++|+++.+|+++ ++|..
T Consensus 148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~f 225 (480)
T 3b3j_A 148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 225 (480)
T ss_dssp HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCe
Confidence 45556555 45568999999999999998887 688899999998776666542 689999999998 77764
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+|+.
T Consensus 226 D~Ivs 230 (480)
T 3b3j_A 226 DIIIS 230 (480)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99874
No 63
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.35 E-value=1.3e-06 Score=70.21 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=56.1
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC---CCceEEecCcCC-CCCCC--CEE
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY---SGVKHIGGIMLE-RIPKG--DAI 230 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~P~~--D~~ 230 (233)
.+...++ .....+|||||||+|.++..++++.+ .+++.+|+ +..++.+++. .+|+++.+|+.+ ++|.+ |++
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 4555554 45568999999999999999998733 38999998 5677777653 479999999988 66553 988
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
+.
T Consensus 112 ~~ 113 (243)
T 3bkw_A 112 YS 113 (243)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 64
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.35 E-value=4e-07 Score=73.46 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=55.9
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCC---C-C-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIP---K-G-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P---~-~-D~~~l 232 (233)
..+..+|||||||+|..+..+++.+|..+++.+|+ |+.++.|+++ ++|+++.+|+.+.+| . . |++++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 45668999999999999999999999999999998 5677777652 589999999998555 2 3 98875
No 65
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.34 E-value=7.6e-07 Score=73.24 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=54.2
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCCCCceEEecCcCC-CCCCC--CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSYSGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
...++||||||+|.++..|++++. +++.+|.. ..++.|++.++|+++.+|+-+ ++|.+ |+|+.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~ 105 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIA 105 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEE
Confidence 346899999999999999999874 68999984 588989888999999999988 78875 98874
No 66
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.32 E-value=1.2e-06 Score=67.19 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=49.6
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCCCCceEEecCcCCCCCCC--CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSYSGVKHIGGIMLERIPKG--DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~~ri~~~~gD~f~~~P~~--D~~~l 232 (233)
+..+|+|||||+|.++..++++. +++.+|+. ..++. .++++++.+|++++++.+ |+++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~ 84 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVF 84 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEE
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEE
Confidence 34699999999999999999987 89999985 46665 578999999999977743 98875
No 67
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.31 E-value=1.1e-06 Score=70.98 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=58.8
Q ss_pred HHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC-CCCCC
Q 039903 156 TNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE-RIPKG 227 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~P~~ 227 (233)
...+++.++ .....+|||||||+|.++..+++..+ +++.+|+ |..++.+++. ++|+++.+|+.+ ++|.+
T Consensus 10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 345666666 77789999999999999999999886 7899998 5577766542 689999999987 66653
Q ss_pred --CEEEe
Q 039903 228 --DAILI 232 (233)
Q Consensus 228 --D~~~l 232 (233)
|+++.
T Consensus 87 ~fD~v~~ 93 (239)
T 1xxl_A 87 SFDIITC 93 (239)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 98874
No 68
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.31 E-value=1.1e-06 Score=71.34 Aligned_cols=66 Identities=11% Similarity=0.229 Sum_probs=52.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhcc------------CCCCceEEecCcCCC----CCCC--
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSS------------SYSGVKHIGGIMLER----IPKG-- 227 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~------------~~~ri~~~~gD~f~~----~P~~-- 227 (233)
.+..+|||||||+|.++..+++.+|+.+++.+|+. .+++.|+ ..++|+++.+|+.+. +|.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 44578999999999999999999999999999984 4665442 136899999999863 4554
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|.+++
T Consensus 125 D~v~~ 129 (235)
T 3ckk_A 125 TKMFF 129 (235)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77654
No 69
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.31 E-value=6.1e-07 Score=75.93 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=53.6
Q ss_pred ceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC---CCCC-C-CEEEe
Q 039903 170 KQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE---RIPK-G-DAILI 232 (233)
Q Consensus 170 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~---~~P~-~-D~~~l 232 (233)
.+|||||||.|.+++.+++.+|+.+++++|+ |.+++.++++ +||+++.+|.++ ..+. . |+|++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIR 165 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence 4999999999999999999999999999999 5688887652 689999999886 3443 3 98875
No 70
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.29 E-value=3.8e-07 Score=73.99 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=57.9
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----CCceEEecCcCC-CCCCC--C
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----SGVKHIGGIMLE-RIPKG--D 228 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~P~~--D 228 (233)
..+++.++ .....+|||||||+|.++..++++. ..+++.+|. |..++.+++. ++++++.+|+.+ ++|.+ |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 34555555 5567899999999999999999987 557999998 5677776653 579999999988 66653 9
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
+|+.
T Consensus 161 ~v~~ 164 (254)
T 1xtp_A 161 LIVI 164 (254)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 71
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.29 E-value=2.2e-06 Score=69.07 Aligned_cols=70 Identities=17% Similarity=0.347 Sum_probs=54.0
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCCCCceEEecCcCC---CCCCC--CEEEe
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSYSGVKHIGGIMLE---RIPKG--DAILI 232 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~gD~f~---~~P~~--D~~~l 232 (233)
+...++.+++..+|||||||+|.++..++++ ..+++.+|+ +..++.+++. ++++.+|+.+ ++|.+ |+|+.
T Consensus 32 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~ 107 (240)
T 3dli_A 32 LRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMI 107 (240)
T ss_dssp HGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred HHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEE
Confidence 3333332456689999999999999999998 456899998 5678877764 9999999887 66653 99874
No 72
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.29 E-value=1.3e-06 Score=72.34 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=61.1
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHH-cCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCC-
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISN-YLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPK- 226 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~- 226 (233)
..++..++ .....+|||+|||+|.++..++++ .|..+++.+|. |..++.++++ ++++++.+|+.+.+|.
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 34556555 667789999999999999999999 78999999998 6677777653 5899999999987765
Q ss_pred C-CEEEe
Q 039903 227 G-DAILI 232 (233)
Q Consensus 227 ~-D~~~l 232 (233)
. |++++
T Consensus 181 ~~D~V~~ 187 (277)
T 1o54_A 181 DVDALFL 187 (277)
T ss_dssp SEEEEEE
T ss_pred ccCEEEE
Confidence 3 99875
No 73
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.28 E-value=1.7e-06 Score=72.34 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=58.2
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCCC-
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPKG- 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~~- 227 (233)
..+++.++ .....+|||||||+|.++..+++++| .+++.+|+ |..++.+++. ++|+++.+|+.+- +..
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~f 138 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPV 138 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCc
Confidence 34556665 67778999999999999999999988 89999998 5677777542 4899999999765 443
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+|+.
T Consensus 139 D~v~~ 143 (302)
T 3hem_A 139 DRIVS 143 (302)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88874
No 74
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.28 E-value=1.4e-06 Score=71.95 Aligned_cols=75 Identities=8% Similarity=0.179 Sum_probs=59.0
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHH-cCCCcEEEeec-hHHHhhccC---------CCCceEEecCcCC-CC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISN-YLHIKGVNFDL-SHVIQDSSS---------YSGVKHIGGIMLE-RI 224 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~v~~~a~~---------~~ri~~~~gD~f~-~~ 224 (233)
..++..++ .....+|+|||||+|.++..++++ .|..+++.+|+ |+.++.+++ .++|+++.+|+.+ ++
T Consensus 89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 34555555 667789999999999999999996 58899999998 667766653 2589999999998 55
Q ss_pred CC-C-CEEEe
Q 039903 225 PK-G-DAILI 232 (233)
Q Consensus 225 P~-~-D~~~l 232 (233)
+. . |++++
T Consensus 168 ~~~~~D~v~~ 177 (280)
T 1i9g_A 168 PDGSVDRAVL 177 (280)
T ss_dssp CTTCEEEEEE
T ss_pred CCCceeEEEE
Confidence 54 3 98875
No 75
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.27 E-value=1.3e-06 Score=72.16 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=59.2
Q ss_pred HHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-CCceEEecCcCC-CCCCC-CEEE
Q 039903 156 TNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-SGVKHIGGIMLE-RIPKG-DAIL 231 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~P~~-D~~~ 231 (233)
...+++.++ .....+|||||||+|.++..+++ |..+++.+|+ |..++.+++. ++++++.+|+.+ +++.. |+|+
T Consensus 46 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 122 (279)
T 3ccf_A 46 GEDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF 122 (279)
T ss_dssp CCHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence 445666665 56678999999999999999998 8889999998 5677777653 789999999988 55544 9887
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
.
T Consensus 123 ~ 123 (279)
T 3ccf_A 123 S 123 (279)
T ss_dssp E
T ss_pred E
Confidence 4
No 76
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.26 E-value=1.8e-06 Score=66.63 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=56.1
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-CCceEEecCcCC-CCCC-C-CEEEe
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-SGVKHIGGIMLE-RIPK-G-DAILI 232 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~P~-~-D~~~l 232 (233)
.++..+ .+...+|+|||||.|.++..+++. ..+++.+|. |..++.+++. ++++++.+|+.+ ++|. . |+++.
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 344544 356689999999999999999987 568999998 5677777654 689999999998 6664 3 98875
No 77
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=98.26 E-value=2.5e-06 Score=67.47 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=55.8
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------C-CceEEecCcCCCCC---CC
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------S-GVKHIGGIMLERIP---KG 227 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~-ri~~~~gD~f~~~P---~~ 227 (233)
++..++ .....+|+|||||+|.++..++++ ..+++.+|+ |+.++.|+++ + +|+++.+|+.+.++ ..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 344455 566689999999999999999998 788999998 5677776642 4 89999999998433 34
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|++++
T Consensus 124 D~v~~ 128 (204)
T 3njr_A 124 EAVFI 128 (204)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98875
No 78
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.25 E-value=2.9e-06 Score=67.94 Aligned_cols=63 Identities=16% Similarity=0.322 Sum_probs=53.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-CCceEEecCcCC-CCCCC-CEEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-SGVKHIGGIMLE-RIPKG-DAIL 231 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~P~~-D~~~ 231 (233)
.+..+|||||||+|.++..++++++ +++.+|+ |..++.+++. ++++++.+|+.+ +.+.. |+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~ 105 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVV 105 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEE
Confidence 4568999999999999999999987 7899998 6688877654 789999999998 55444 9887
No 79
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.25 E-value=1.5e-06 Score=74.51 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=54.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCC-CCCC-C-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLE-RIPK-G-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~P~-~-D~~~l 232 (233)
.+..+|||||||+|.++..++++ +..+++.+|..+.++.|++. ++|+++.+|+.+ ++|. . |+|+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis 139 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS 139 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEE
Confidence 44589999999999999999997 77799999998777766542 579999999998 7885 3 99874
No 80
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.25 E-value=1.1e-06 Score=69.53 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=52.7
Q ss_pred HhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccC------------------CCCceEEecCcC
Q 039903 161 DSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSS------------------YSGVKHIGGIML 221 (233)
Q Consensus 161 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~------------------~~ri~~~~gD~f 221 (233)
..+. .....+|+|||||+|.++..++++ ..+++.+|+. ..++.|++ ..+|+++.+|++
T Consensus 16 ~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 92 (203)
T 1pjz_A 16 SSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF 92 (203)
T ss_dssp HHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred Hhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence 3343 556689999999999999999997 5689999985 57776643 258999999999
Q ss_pred C-CCC--CC-CEEE
Q 039903 222 E-RIP--KG-DAIL 231 (233)
Q Consensus 222 ~-~~P--~~-D~~~ 231 (233)
+ +.+ .. |+++
T Consensus 93 ~l~~~~~~~fD~v~ 106 (203)
T 1pjz_A 93 ALTARDIGHCAAFY 106 (203)
T ss_dssp SSTHHHHHSEEEEE
T ss_pred cCCcccCCCEEEEE
Confidence 8 544 23 8886
No 81
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.24 E-value=2e-06 Score=68.25 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=56.7
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC--CCceEEecCcCC-CCCCC-CEEEe
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY--SGVKHIGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~P~~-D~~~l 232 (233)
.+++.+. .....+|||||||+|.++..++++ ..+++.+|. |..++.+++. ++++++.+|+.+ +.+.. |+++.
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 4455544 456689999999999999999997 568999998 5577777653 489999999998 66643 99875
No 82
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.23 E-value=1.7e-06 Score=71.08 Aligned_cols=74 Identities=9% Similarity=0.173 Sum_probs=57.2
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeechH-------HHhhccCC-------CCceEEecC-cC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDLSH-------VIQDSSSY-------SGVKHIGGI-ML 221 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-------v~~~a~~~-------~ri~~~~gD-~f 221 (233)
.+++.++ .....+|||||||+|.++..+++++ |+.+++.+|+.+ .++.+++. ++|+++.+| ++
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 4556665 6677899999999999999999997 889999999854 56666542 589999998 65
Q ss_pred C---CCCCC--CEEEe
Q 039903 222 E---RIPKG--DAILI 232 (233)
Q Consensus 222 ~---~~P~~--D~~~l 232 (233)
. ++|.+ |+|+.
T Consensus 113 ~~~~~~~~~~fD~v~~ 128 (275)
T 3bkx_A 113 DDLGPIADQHFDRVVL 128 (275)
T ss_dssp TCCGGGTTCCCSEEEE
T ss_pred hccCCCCCCCEEEEEE
Confidence 4 34443 99874
No 83
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.23 E-value=4.7e-07 Score=75.98 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=55.6
Q ss_pred ccCcceEEEecCCccHHHHHHH-HHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-CCCCC-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIII-SNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l 232 (233)
.....+|+|||||+|.++..++ ..+|+.+++.+|+ |..++.++++ +||+++.+|+.+ +++.. |+|+.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~ 193 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTS 193 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEEC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEE
Confidence 4667899999999999999996 6799999999999 6677777642 469999999998 66644 98875
No 84
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.23 E-value=1.5e-06 Score=72.64 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=56.1
Q ss_pred HHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC---------CCceEEecCcCC-CC
Q 039903 156 TNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY---------SGVKHIGGIMLE-RI 224 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~---------~ri~~~~gD~f~-~~ 224 (233)
...+++.++ ....+|||||||+|.++..++++ ..+++.+|+ |..++.+++. ++|+++.+|+.+ +.
T Consensus 72 ~~~~~~~~~--~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 72 AREFATRTG--PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHC--CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHhhC--CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 445555554 23349999999999999999998 568999998 5677777652 579999999998 66
Q ss_pred CCC-CEEEe
Q 039903 225 PKG-DAILI 232 (233)
Q Consensus 225 P~~-D~~~l 232 (233)
+.. |+|++
T Consensus 148 ~~~fD~v~~ 156 (299)
T 3g2m_A 148 DKRFGTVVI 156 (299)
T ss_dssp SCCEEEEEE
T ss_pred CCCcCEEEE
Confidence 554 97764
No 85
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.22 E-value=1.6e-06 Score=70.66 Aligned_cols=65 Identities=8% Similarity=0.054 Sum_probs=52.6
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCc----CCCCC----CC-CEE
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIM----LERIP----KG-DAI 230 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~----f~~~P----~~-D~~ 230 (233)
+..+|+|||||+|.++..+++++|+.+++.+|+ |..++.|+++ +||+++.+|. +++++ .. |++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 457999999999999999999999999999998 5677777652 4799999994 44555 23 888
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
+.
T Consensus 145 ~~ 146 (254)
T 2h00_A 145 MC 146 (254)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 86
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.21 E-value=3.6e-06 Score=68.38 Aligned_cols=65 Identities=11% Similarity=0.174 Sum_probs=52.4
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC-----CCCceEEecCcCC-CCCCC--CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS-----YSGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
.....+|+|||||+|.++..++++ ..+++.+|. |..++.+++ .++++++.+|+.+ ++|.+ |+++.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 110 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIV 110 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEE
Confidence 566789999999999999999987 568999998 456666654 2689999999987 66653 98875
No 87
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.21 E-value=3.6e-06 Score=65.79 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=48.7
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcC--CCcEEEeechHHHhhccCCCCceEEecCcCC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYL--HIKGVNFDLSHVIQDSSSYSGVKHIGGIMLE 222 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P--~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~f~ 222 (233)
.+.+.+..+....+|+|||||+|.++..+++++| ..+++.+|+.+.. ..++++++.+|+.+
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~ 74 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGK 74 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTT
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccc
Confidence 3445554235668999999999999999999998 6899999987631 23689999999987
No 88
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.20 E-value=2.2e-06 Score=69.03 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=58.5
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCCC-C-
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIPK-G- 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P~-~- 227 (233)
..+++.++ .....+|||||||+|.++..+++..| .+++.+|+ |..++.++++ ++|+++.+|+..++|. +
T Consensus 81 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (235)
T 1jg1_A 81 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 158 (235)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCC
Confidence 34555555 66678999999999999999999998 89999996 5677776652 5799999999666664 2
Q ss_pred -CEEEe
Q 039903 228 -DAILI 232 (233)
Q Consensus 228 -D~~~l 232 (233)
|+|++
T Consensus 159 fD~Ii~ 164 (235)
T 1jg1_A 159 YDVIIV 164 (235)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 88875
No 89
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.20 E-value=4e-06 Score=68.10 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=47.5
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhcc--------------CCCCceEEecCcCCC
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSS--------------SYSGVKHIGGIMLER 223 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~--------------~~~ri~~~~gD~f~~ 223 (233)
++..+|||||||+|.++..+++.+|+.+++.+|+ +.+++.++ ..++|+++.+|.++.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~ 119 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 119 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH
Confidence 4567999999999999999999999999999997 45665543 226899999999873
No 90
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.20 E-value=6.9e-06 Score=66.48 Aligned_cols=64 Identities=17% Similarity=0.352 Sum_probs=51.8
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCcCC-CCCCC-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~P~~-D~~~l 232 (233)
.+..+|||||||+|.++..++++ ..+++.+|+ |..++.+++. .+|+++.+|+.+ +.+.. |++++
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~ 111 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTM 111 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEE
Confidence 45679999999999999999987 568999998 5677776542 479999999998 55554 98874
No 91
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.19 E-value=3.4e-06 Score=72.06 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=56.4
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCC-CCCC-C-C
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLE-RIPK-G-D 228 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~P~-~-D 228 (233)
+.+... ..+..+|+|||||+|.++..++++ +..+++.+|..+.++.+++. ++|+++.+|+.+ ++|. . |
T Consensus 56 i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 133 (340)
T 2fyt_A 56 IYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD 133 (340)
T ss_dssp HHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred HHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEE
Confidence 334334 455689999999999999999987 55689999997777766542 689999999998 7774 3 9
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
+++.
T Consensus 134 ~Ivs 137 (340)
T 2fyt_A 134 VIIS 137 (340)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9873
No 92
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.19 E-value=1.9e-06 Score=72.33 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=53.2
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC-----------CCCceEEecCcCCCC--CC-C-CEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS-----------YSGVKHIGGIMLERI--PK-G-DAI 230 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~--P~-~-D~~ 230 (233)
.+..+|||||||+|..++.+++..|..+++++|+ |.+++.+++ .+|++++.+|.++.+ +. . |+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4568999999999999999999878889999998 558877654 258999999998743 33 3 988
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
+.
T Consensus 162 i~ 163 (294)
T 3adn_A 162 IS 163 (294)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 93
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.19 E-value=3.5e-06 Score=64.93 Aligned_cols=73 Identities=12% Similarity=0.241 Sum_probs=57.0
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------C--CceEEecCcCCCCCC-
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------S--GVKHIGGIMLERIPK- 226 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~--ri~~~~gD~f~~~P~- 226 (233)
..+++.+. .....+|+|||||+|.++..+++. ..+++.+|+ |..++.++++ + |++++.+|+.+..+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34555555 566789999999999999999998 778999998 5677766542 3 599999999986655
Q ss_pred C-CEEEe
Q 039903 227 G-DAILI 232 (233)
Q Consensus 227 ~-D~~~l 232 (233)
. |+++.
T Consensus 119 ~~D~v~~ 125 (194)
T 1dus_A 119 KYNKIIT 125 (194)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 3 98875
No 94
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.19 E-value=8.8e-07 Score=69.45 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=51.1
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC-------CCceEEecCcCCCCCC-C-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY-------SGVKHIGGIMLERIPK-G-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l 232 (233)
....+|+|+|||.|-++..++...|+.+.+..|.. ..++.++++ .++++ .|..+..|. . |++++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa 121 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFL 121 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhH
Confidence 45789999999999999999999999999999995 477777653 25655 788774444 3 99874
No 95
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=98.19 E-value=2.3e-06 Score=71.62 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=54.6
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCCC--CCEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIPK--GDAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P~--~D~~~l 232 (233)
.+...+|+|||||+|.++..++.+.|+.+++.+|+ |+.++.|+++ ++|+++.+|..+ +|. .|++++
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~ 194 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMV 194 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEE
Confidence 67789999999999988877777789999999998 6688887753 799999999987 233 399875
No 96
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=98.19 E-value=3.1e-06 Score=73.46 Aligned_cols=66 Identities=21% Similarity=0.387 Sum_probs=55.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHc-CCCcEEEeec-hHHHhhccCC--------------CCceEEecCcCC-------C
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDL-SHVIQDSSSY--------------SGVKHIGGIMLE-------R 223 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~a~~~--------------~ri~~~~gD~f~-------~ 223 (233)
....+|||||||+|.++..+++.+ |..+++.+|+ |..++.++++ ++|+++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 345799999999999999999997 8999999998 5677777653 689999999987 5
Q ss_pred CCCC--CEEEe
Q 039903 224 IPKG--DAILI 232 (233)
Q Consensus 224 ~P~~--D~~~l 232 (233)
+|.+ |+|+.
T Consensus 162 ~~~~~fD~V~~ 172 (383)
T 4fsd_A 162 VPDSSVDIVIS 172 (383)
T ss_dssp CCTTCEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 6653 98874
No 97
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.18 E-value=3.8e-06 Score=65.26 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=56.5
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC-CCCCC-
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE-RIPKG- 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~P~~- 227 (233)
+.+++.++ ..+..+|+|||||+|.++..++++ ..+++.+|. |..++.+++. ++++++.+|+.+ +++..
T Consensus 22 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (199)
T 2xvm_A 22 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY 98 (199)
T ss_dssp HHHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred HHHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence 34555555 555679999999999999999987 568999998 5677776542 479999999998 55444
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+++.
T Consensus 99 D~v~~ 103 (199)
T 2xvm_A 99 DFILS 103 (199)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88874
No 98
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=98.18 E-value=2.7e-06 Score=69.91 Aligned_cols=67 Identities=9% Similarity=0.196 Sum_probs=54.2
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----------CCceEEecCcCCC--------CCC
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----------SGVKHIGGIMLER--------IPK 226 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----------~ri~~~~gD~f~~--------~P~ 226 (233)
.....+|||+|||+|.++..+++++|..+++.+|+ |..++.++++ +||+++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45567999999999999999999999999999998 5566665432 3699999999874 344
Q ss_pred -C-CEEEe
Q 039903 227 -G-DAILI 232 (233)
Q Consensus 227 -~-D~~~l 232 (233)
. |+|+.
T Consensus 114 ~~fD~Vv~ 121 (260)
T 2ozv_A 114 EHFHHVIM 121 (260)
T ss_dssp TCEEEEEE
T ss_pred CCcCEEEE
Confidence 3 98875
No 99
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=98.18 E-value=7.3e-07 Score=71.13 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=54.3
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCC-------C-CC
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIP-------K-GD 228 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P-------~-~D 228 (233)
..+..+|||||||+|..+..+++++| +.+++.+|+ |+.++.++++ ++|+++.+|+.+.+| . -|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 45668999999999999999999999 889999998 6677766542 579999999986322 2 38
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
++++
T Consensus 136 ~v~~ 139 (223)
T 3duw_A 136 FIFI 139 (223)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 100
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=98.17 E-value=1.4e-06 Score=70.47 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=53.9
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC-CCC----CC-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE-RIP----KG-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~P----~~-D~~~l 232 (233)
+++..+|+|||||+|.++..+++.+|+.+++.+|. +..++.++++ ++|+++.+|+.+ +.+ .. |+|+.
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 35668999999999999999999999999999998 4567666542 579999999977 442 23 88874
No 101
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=98.17 E-value=4.4e-06 Score=67.07 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=54.5
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCC-----CC-CEEE
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIP-----KG-DAIL 231 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P-----~~-D~~~ 231 (233)
..+..+|||||||+|..+..+++.+|..+++.+|. |..++.++++ ++|+++.+|+.+.+| .. |+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34567999999999999999999999999999998 5677776653 579999999987322 33 8887
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
+
T Consensus 132 ~ 132 (233)
T 2gpy_A 132 I 132 (233)
T ss_dssp E
T ss_pred E
Confidence 4
No 102
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=98.17 E-value=7.7e-06 Score=65.64 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=53.4
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC---CCceEEecCcCC-CCCCC--CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY---SGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
+...+|||||||+|.++..++++ ..+++.+|+ |..++.+++. .+++++.+|+.+ ++|.+ |+++.
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 122 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMA 122 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEE
Confidence 45679999999999999999998 568999998 5677777664 789999999998 77653 98874
No 103
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=98.17 E-value=2.5e-06 Score=70.59 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=54.7
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-C-CCCC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-R-IPKG 227 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~-~P~~ 227 (233)
.++..++ .+..+|||||||+|.++..++++ ..+++.+|+ |..++.+++. ++|+++.+|+.+ + ++.+
T Consensus 60 ~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 60 RVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 3444444 23579999999999999999998 668999998 5677777652 689999999998 3 4543
Q ss_pred --CEEEe
Q 039903 228 --DAILI 232 (233)
Q Consensus 228 --D~~~l 232 (233)
|+|+.
T Consensus 136 ~fD~v~~ 142 (285)
T 4htf_A 136 PVDLILF 142 (285)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 98875
No 104
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=98.17 E-value=9.9e-07 Score=71.94 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=54.7
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC-------CCceEEecCcCCC---CCC---CCEE
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLER---IPK---GDAI 230 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~P~---~D~~ 230 (233)
..+..+|||||||+|..+..+++.+| +.+++.+|+ |+.++.|+++ ++|+++.+|+.+. ++. .|++
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45668999999999999999999998 899999999 6677776652 5899999998762 322 3998
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
++
T Consensus 141 ~~ 142 (248)
T 3tfw_A 141 FI 142 (248)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 105
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.16 E-value=1.8e-06 Score=67.60 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=52.1
Q ss_pred cceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC-CCCceEEecCcCC-CCCCC--CEEEe
Q 039903 169 IKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS-YSGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 169 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
..+|||||||+|.++..++++ ..+++.+|+ +..++.+++ .++++++.+|+.+ ++|.+ |+++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 108 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLA 108 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEe
Confidence 578999999999999999998 558999998 567777766 4789999999998 66653 98875
No 106
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.16 E-value=4.1e-06 Score=66.26 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=57.6
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCC-C-C
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIP-K-G 227 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P-~-~ 227 (233)
.+++.+. .....+|+|||||+|.++..+++.. |+.+++.+|. |..++.+++. ++++++.+|+..++| . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 3444444 5566899999999999999999998 7789999998 5577766542 579999999977665 2 2
Q ss_pred -CEEEe
Q 039903 228 -DAILI 232 (233)
Q Consensus 228 -D~~~l 232 (233)
|+++.
T Consensus 147 fD~v~~ 152 (215)
T 2yxe_A 147 YDRIYT 152 (215)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 88875
No 107
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.16 E-value=1.2e-06 Score=67.19 Aligned_cols=74 Identities=9% Similarity=-0.015 Sum_probs=54.9
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCC---CCC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLER---IPK 226 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~P~ 226 (233)
.+++.+....+..+|+|||||+|.++..++++ +..+++.+|+ +..++.++++ ++++++.+|+.+. .+.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 34444332345579999999999999999987 7789999999 5677776542 4799999999873 223
Q ss_pred C-CEEEe
Q 039903 227 G-DAILI 232 (233)
Q Consensus 227 ~-D~~~l 232 (233)
. |++++
T Consensus 100 ~fD~i~~ 106 (177)
T 2esr_A 100 RFDLVFL 106 (177)
T ss_dssp CEEEEEE
T ss_pred CCCEEEE
Confidence 3 88875
No 108
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.15 E-value=7.9e-07 Score=72.02 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=50.1
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCcCC---CCCCC--CEEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLE---RIPKG--DAIL 231 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~---~~P~~--D~~~ 231 (233)
....+|||||||.|..+..+++..|. +.+++|+ |.+++.|++. .+++++.+|... ++|.+ |.++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~ 133 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEE
Confidence 44579999999999999999998885 7889998 6688887652 568888888754 45653 7665
No 109
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.15 E-value=3.7e-06 Score=72.08 Aligned_cols=75 Identities=13% Similarity=-0.034 Sum_probs=60.4
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeec-hHHHhhccCC------CCceEEecCcCC-CCCC-
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE-RIPK- 226 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~P~- 226 (233)
..++.... +....+++|+|||+|.+++.++... |+.+++.+|+ |.+++.|+++ ++|+++.+|+.+ +.|.
T Consensus 193 ~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~ 271 (354)
T 3tma_A 193 QALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFP 271 (354)
T ss_dssp HHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCC
T ss_pred HHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccC
Confidence 34445445 7777899999999999999999998 9999999998 5678777653 489999999998 5443
Q ss_pred C-CEEEe
Q 039903 227 G-DAILI 232 (233)
Q Consensus 227 ~-D~~~l 232 (233)
. |+++.
T Consensus 272 ~~D~Ii~ 278 (354)
T 3tma_A 272 EVDRILA 278 (354)
T ss_dssp CCSEEEE
T ss_pred CCCEEEE
Confidence 3 88875
No 110
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.15 E-value=3e-06 Score=66.59 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=53.3
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----CCceEEecCcCC-CCCCC--CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----SGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
....+|+|||||+|.++..++++.+. +++.+|+ |..++.+++. ++|+++.+|+.+ ++|.+ |+|+.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~ 113 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLE 113 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEE
Confidence 45579999999999999999998776 8999998 5577766542 689999999998 67653 99874
No 111
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.15 E-value=4.8e-06 Score=68.88 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=56.3
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCC-C
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPK-G 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~-~ 227 (233)
..+++.++ .....+|||||||.|.++..++++++. +++.+|+ |+.++.+++. ++|+++.+|+.+ +|. .
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV 130 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCe
Confidence 34555555 666789999999999999999988765 9999998 5577666542 589999999964 444 3
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+|+.
T Consensus 131 D~v~~ 135 (287)
T 1kpg_A 131 DRIVS 135 (287)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 98874
No 112
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.14 E-value=3e-06 Score=72.41 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=57.8
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC-----CCceEEecCcCCCCCCC-CE
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY-----SGVKHIGGIMLERIPKG-DA 229 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~-----~ri~~~~gD~f~~~P~~-D~ 229 (233)
..+++.++ .....+|+|||||+|.++..+++++|+.+++.+|.. ..++.++++ .+++++.+|+++..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34555554 334568999999999999999999999999999994 567776653 34788999999854444 98
Q ss_pred EEe
Q 039903 230 ILI 232 (233)
Q Consensus 230 ~~l 232 (233)
|+.
T Consensus 265 Iv~ 267 (343)
T 2pjd_A 265 IIS 267 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 113
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=98.13 E-value=4.8e-06 Score=65.39 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=52.2
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCCCC-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIPKG-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P~~-D~~~l 232 (233)
....+|||||||+|.++..+++ +|..+++.+|+ |..++.++++ ++|+++.+|+++..+.. |+++.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~ 131 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVA 131 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEE
Confidence 4567999999999999999776 67789999998 5677777652 34999999998855554 98874
No 114
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.13 E-value=3.8e-06 Score=67.45 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=51.8
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhc----cCCCCceEEecCcCCC-----CCCC-CEEE
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDS----SSYSGVKHIGGIMLER-----IPKG-DAIL 231 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a----~~~~ri~~~~gD~f~~-----~P~~-D~~~ 231 (233)
..+..+|+|||||+|.++..+++.+|..+++.+|.. ..++.+ +..++|+++.+|+.++ ++.. |+++
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE
Confidence 556689999999999999999999998899999984 456544 3347899999999862 2223 8875
No 115
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.12 E-value=3.6e-06 Score=67.58 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=51.2
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC--CCceEEecCcCCCCCCC--CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY--SGVKHIGGIMLERIPKG--DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~--~ri~~~~gD~f~~~P~~--D~~~l 232 (233)
....+|||||||+|.++..++++++ +++.+|+ +..++.+++. .+|+++.+|+.+..|.+ |+|++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~ 109 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVL 109 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEE
Confidence 3457899999999999999999887 5888998 4577777653 28999999998854443 98875
No 116
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.12 E-value=3.4e-06 Score=69.07 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=54.0
Q ss_pred cc-CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCC---CCC-C-CEEE
Q 039903 166 FE-QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLER---IPK-G-DAIL 231 (233)
Q Consensus 166 ~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~P~-~-D~~~ 231 (233)
.+ +..+|+|||||+|.++..++++.+. +++.+|+ |..++.|+++ +||+++.+|+.+. +|. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999876 8999998 5577777653 5899999999982 444 3 9887
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
.
T Consensus 125 ~ 125 (259)
T 3lpm_A 125 C 125 (259)
T ss_dssp E
T ss_pred E
Confidence 5
No 117
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.12 E-value=2.5e-06 Score=67.98 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=53.5
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCC--------CC-
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIP--------KG- 227 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P--------~~- 227 (233)
..+..+|||||||+|..+..+++++| +.+++.+|. |+.++.++++ ++|+++.+|..+.+| ..
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 34567999999999999999999998 899999998 5577766542 579999999976322 33
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|++++
T Consensus 142 D~v~~ 146 (225)
T 3tr6_A 142 DLIYI 146 (225)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88875
No 118
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.11 E-value=3.8e-06 Score=65.50 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=53.4
Q ss_pred ccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-C-CCC-C-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-R-IPK-G-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~-~P~-~-D~~~l 232 (233)
.+...+|+|+|||+|.++..+++++ |..+++.+|+ |..++.++++ ++++++.+|+.+ + .+. . |++++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4556799999999999999999986 7789999998 5577777653 589999999876 2 333 3 88874
No 119
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.11 E-value=5.8e-06 Score=65.11 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=55.7
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCCC--C-C
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIPK--G-D 228 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P~--~-D 228 (233)
+++.++ ..+..+|+|||||+|.++..+++. ..+++.+|. |..++.++++ ++++++.+|+++..+. . |
T Consensus 69 ~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (210)
T 3lbf_A 69 MTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFD 145 (210)
T ss_dssp HHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred HHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCcc
Confidence 444555 567789999999999999999998 678999998 5677766542 5799999999985442 2 9
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
++++
T Consensus 146 ~i~~ 149 (210)
T 3lbf_A 146 AIIV 149 (210)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 120
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=98.11 E-value=1.5e-06 Score=66.13 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=54.9
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC-CCCceEEecCcCCCCCCC--CEEEe
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS-YSGVKHIGGIMLERIPKG--DAILI 232 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~gD~f~~~P~~--D~~~l 232 (233)
+++.++ ..+..+|||||||+|.++..+++++. +++.+|+ +..++.+++ .++|+++.+| .++|.+ |+++.
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~ 81 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILF 81 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEE
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEE
Confidence 444555 66778999999999999999999984 8999998 567777765 4899999999 555553 98874
No 121
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.11 E-value=2.9e-06 Score=68.26 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=53.5
Q ss_pred ccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeechH-----HHhhccCCCCceEEecCcCCC--CC--C-C-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDLSH-----VIQDSSSYSGVKHIGGIMLER--IP--K-G-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-----v~~~a~~~~ri~~~~gD~f~~--~P--~-~-D~~~l 232 (233)
.....+|+|||||+|.++..+++++ |..+++.+|+.+ .++.++.+++++++.+|+.++ +| . . |+++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~ 153 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFA 153 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence 5566899999999999999999997 788999999853 355555558999999999873 33 2 3 88875
No 122
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.10 E-value=2e-06 Score=66.31 Aligned_cols=66 Identities=11% Similarity=-0.051 Sum_probs=51.8
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCC------CCC-CEE
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERI------PKG-DAI 230 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~------P~~-D~~ 230 (233)
.....+|+|+|||+|.++..+++ .+..+++.+|+ |..++.++++ ++++++.+|+.+.. +.. |++
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 120 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence 34557999999999999999888 56788999998 5677777653 57999999998732 233 888
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
++
T Consensus 121 ~~ 122 (187)
T 2fhp_A 121 LL 122 (187)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 123
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.09 E-value=5.2e-06 Score=69.21 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=56.6
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-CCCCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKG 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~ 227 (233)
..+++.++ .....+|+|||||+|.++..++++.. +++.+|+ +..++.+++. ++++++.+|+.+ ++|..
T Consensus 18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~f 94 (285)
T 1zq9_A 18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF 94 (285)
T ss_dssp HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhh
Confidence 34556665 66678999999999999999999854 7899998 4566655432 579999999998 77766
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+++.
T Consensus 95 D~vv~ 99 (285)
T 1zq9_A 95 DTCVA 99 (285)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87763
No 124
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=98.09 E-value=2.1e-06 Score=68.48 Aligned_cols=67 Identities=7% Similarity=0.113 Sum_probs=53.5
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC-------CCceEEecCcCC---CCC-----C-C
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE---RIP-----K-G 227 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~---~~P-----~-~ 227 (233)
..+..+|||||||+|..+..++++.| +.+++.+|+ |+.++.|+++ +||+++.+|+.+ .++ . -
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34568999999999999999999875 889999998 5677777653 579999999865 233 2 3
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|++++
T Consensus 136 D~V~~ 140 (221)
T 3u81_A 136 DMVFL 140 (221)
T ss_dssp SEEEE
T ss_pred EEEEE
Confidence 99875
No 125
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.09 E-value=5.3e-06 Score=66.61 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=51.4
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCcCC-CCCCC-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~P~~-D~~~l 232 (233)
+...+|||||||+|.++..++++ .+++.+|+ |..++.+++. .+++++.+|+.+ +.|.. |++++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 102 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITI 102 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEE
Confidence 34489999999999999999987 78999998 5677777653 579999999988 56654 98874
No 126
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=98.08 E-value=2.8e-06 Score=69.45 Aligned_cols=66 Identities=12% Similarity=0.051 Sum_probs=53.1
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC-CCC----CC-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE-RIP----KG-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~P----~~-D~~~l 232 (233)
....+|+|||||+|..+..++..+|+.+++.+|. +..++.++++ .+|+++.+|+.+ +.. .. |+++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 4568999999999999999999999999999997 4566666542 569999999887 321 23 88874
No 127
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.08 E-value=1.3e-06 Score=69.94 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=53.6
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC-------CCceEEecCcCCC---CC-----CC-
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLER---IP-----KG- 227 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~P-----~~- 227 (233)
..+..+|+|||||+|..+..+++..| ..+++.+|. |..++.++++ ++|+++.+|+++. ++ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45568999999999999999999988 789999998 6677766542 6899999998763 21 33
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|++++
T Consensus 147 D~v~~ 151 (229)
T 2avd_A 147 DVAVV 151 (229)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88875
No 128
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.08 E-value=6.9e-06 Score=66.49 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=52.4
Q ss_pred CcceEEEecCCccHHHHHHHHH----cCCCcEEEeec-hHHHhhccC-CCCceEEecCcCCC--CC---C--CCEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISN----YLHIKGVNFDL-SHVIQDSSS-YSGVKHIGGIMLER--IP---K--GDAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~gD~f~~--~P---~--~D~~~l 232 (233)
+..+|||||||+|..+..+++. +|+.+++.+|+ |+.++.|+. .++|+++.+|..+. +| . -|++++
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 3479999999999999999998 79999999998 556776654 37899999999873 22 2 288874
No 129
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.08 E-value=7.6e-06 Score=68.80 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=56.6
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCC-C
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPK-G 227 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~-~ 227 (233)
..+++.++ .....+|||||||.|.++..+++++ ..+++.+|+ |..++.+++. ++|+++.+|+.+ +|. .
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPV 156 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCC
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCc
Confidence 34555555 6667899999999999999999987 569999998 5677766542 579999999865 344 3
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+|+.
T Consensus 157 D~v~~ 161 (318)
T 2fk8_A 157 DRIVS 161 (318)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98874
No 130
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.08 E-value=6.8e-06 Score=66.91 Aligned_cols=67 Identities=10% Similarity=0.300 Sum_probs=53.1
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC----CCCceEEecCcCC-CCCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS----YSGVKHIGGIMLE-RIPK 226 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~P~ 226 (233)
..+++.++ .....+|+|||||+|.++..++++. .+++.+|+ +..++.+++ .++++++.+|+.+ ++|.
T Consensus 20 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 20 DKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCccc
Confidence 44555555 5666899999999999999999986 67999998 456666654 2689999999998 6764
No 131
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.08 E-value=6.8e-06 Score=70.39 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=56.6
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCC-CCCCC-C
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLE-RIPKG-D 228 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~P~~-D 228 (233)
.+++.+. ..+..+|||||||+|.++..++++ +..+++.+|..+.++.+++. ++|+++.+|+.+ +.|.. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4455554 445689999999999999998885 66789999997766655431 689999999998 66654 9
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
+|+.
T Consensus 119 ~Ivs 122 (348)
T 2y1w_A 119 IIIS 122 (348)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 132
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.07 E-value=6.3e-06 Score=66.27 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=46.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHH-hhc---cCC------CCceEEecCcCC
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVI-QDS---SSY------SGVKHIGGIMLE 222 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~-~~a---~~~------~ri~~~~gD~f~ 222 (233)
....+|||||||+|.++..+++++|..+++.+|+. +.+ +.| ++. ++|+++.+|..+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES 89 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence 45579999999999999999999999999999996 543 433 442 579999999876
No 133
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.07 E-value=5.1e-06 Score=66.48 Aligned_cols=64 Identities=8% Similarity=0.057 Sum_probs=52.1
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC-CCCceEEecCcCC--CCC-CC--CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS-YSGVKHIGGIMLE--RIP-KG--DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~gD~f~--~~P-~~--D~~~l 232 (233)
....+|||||||+|.++..++++ ..+++.+|+ |..++.+++ .++++++.+|+.+ +++ .+ |+|+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~ 117 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVS 117 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEe
Confidence 45579999999999999999998 568999998 567877765 3789999999987 444 32 88874
No 134
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.07 E-value=8.2e-06 Score=68.40 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=56.5
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccC----CCCceEEecCcCC-CCCC--CC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSS----YSGVKHIGGIMLE-RIPK--GD 228 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~----~~ri~~~~gD~f~-~~P~--~D 228 (233)
..+++..+ .....+|+|||||+|.++..++++ ..+++.+|+. ..++.+++ .++++++.+|+.+ ++|. .|
T Consensus 40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD 116 (295)
T 3gru_A 40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFN 116 (295)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCS
T ss_pred HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCcc
Confidence 34555555 566689999999999999999998 4678999984 46666654 3799999999998 7776 38
Q ss_pred EEE
Q 039903 229 AIL 231 (233)
Q Consensus 229 ~~~ 231 (233)
+++
T Consensus 117 ~Iv 119 (295)
T 3gru_A 117 KVV 119 (295)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 135
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.07 E-value=5.4e-06 Score=69.69 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=53.9
Q ss_pred HHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCcCC
Q 039903 156 TNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLE 222 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~ 222 (233)
...+++.+. .....++||+|||+|.++..+++++|+.+++.+|. |..++.|+++ +|++++.+||.+
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~ 86 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE 86 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 345556555 55668999999999999999999999999999998 5577776542 689999999865
No 136
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.07 E-value=5.4e-06 Score=70.42 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=53.0
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCC-CCCC-C-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLE-RIPK-G-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~P~-~-D~~~l 232 (233)
..+..+|+|||||+|.++..++++ +..+++.+|..+.++.+++. ++|+++.+|+.+ ++|. . |+++.
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs 111 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEE
Confidence 344579999999999999998886 66689999998777666542 689999999998 6774 3 98874
No 137
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.06 E-value=3.5e-06 Score=69.93 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=53.3
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC----------CCCceEEecCcCCCC---CCC-CEEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS----------YSGVKHIGGIMLERI---PKG-DAIL 231 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~~---P~~-D~~~ 231 (233)
.+..+|+|||||+|..++.+++.+|..+++++|+ |.+++.+++ .+|++++.+|.++.+ +.. |+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3568999999999999999999878889999998 567777653 268999999988732 233 9887
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
+
T Consensus 154 ~ 154 (275)
T 1iy9_A 154 V 154 (275)
T ss_dssp E
T ss_pred E
Confidence 5
No 138
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.06 E-value=9.2e-06 Score=64.57 Aligned_cols=67 Identities=10% Similarity=0.002 Sum_probs=51.9
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechH-----HHhhccCCCCceEEecCcCCC-----CCCC-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSH-----VIQDSSSYSGVKHIGGIMLER-----IPKG-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-----v~~~a~~~~ri~~~~gD~f~~-----~P~~-D~~~l 232 (233)
.++..+|||||||+|.++..+++..|.-+++.+|+.+ .++.++...+|.++.+|..++ ++.. |+++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 132 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ 132 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEE
Confidence 4566799999999999999999999877899999864 344455456899999998763 2333 88874
No 139
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=98.05 E-value=4.9e-06 Score=68.15 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=54.8
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-CCceEEecCcCC-CCCCC--CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-SGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
....+|+|||||.|.++..+++++|..+++.+|. +..++.+++. +++.++.+|+.+ +++.+ |+++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 154 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR 154 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEE
Confidence 4557999999999999999999999999999998 4577777653 789999999987 66653 88863
No 140
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.05 E-value=8.9e-06 Score=61.51 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=54.4
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeechHHHhhccCCCCceEEecCcCC-C--------CCC-
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDLSHVIQDSSSYSGVKHIGGIMLE-R--------IPK- 226 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~f~-~--------~P~- 226 (233)
.+++.+.......+|+|||||+|.++..+++.+ |+.+++.+|+.+.+ ..++++++.+|+.+ + +|.
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----PIVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----CCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccc----ccCcEEEEEcccccchhhhhhhccCCCC
Confidence 344444323456799999999999999999995 78999999997722 22789999999998 4 664
Q ss_pred C-CEEEe
Q 039903 227 G-DAILI 232 (233)
Q Consensus 227 ~-D~~~l 232 (233)
. |+++.
T Consensus 88 ~~D~i~~ 94 (180)
T 1ej0_A 88 KVQVVMS 94 (180)
T ss_dssp CEEEEEE
T ss_pred ceeEEEE
Confidence 3 88875
No 141
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.04 E-value=6.8e-06 Score=64.93 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=51.9
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC----CCCceEEecCcCCCCCC-C-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS----YSGVKHIGGIMLERIPK-G-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----~~ri~~~~gD~f~~~P~-~-D~~~l 232 (233)
.....+|||||||+|.++..++++. .+++.+|+ +..++.+++ .++|+++.+|+.+..|. . |+++.
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 120 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVV 120 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEE
Confidence 4566899999999999999999986 37899998 557776654 26899999999983354 3 98875
No 142
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.04 E-value=6.2e-06 Score=64.57 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=52.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-CCceEEecCcCCCCCCC-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-SGVKHIGGIMLERIPKG-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-~ri~~~~gD~f~~~P~~-D~~~l 232 (233)
....+|+|+|||+|.++..+++. +..+++.+|+ |..++.++++ .+++++.+|+++ +|.. |++++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~ 116 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIM 116 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEE
Confidence 45579999999999999999987 6567999998 6688877664 489999999987 4443 88875
No 143
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.04 E-value=6e-06 Score=66.63 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=46.6
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC---CCceEEecCcCC
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY---SGVKHIGGIMLE 222 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~---~ri~~~~gD~f~ 222 (233)
.....+|||||||+|.++..+++..+ +++.+|. |..++.+++. .+|+++.+|+.+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~ 112 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLV 112 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccc
Confidence 34557899999999999999999998 7899998 4577776542 589999999998
No 144
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.04 E-value=9.9e-06 Score=68.84 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=56.5
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHH-cCCCcEEEeec-hHHHhhccCC-----------------CCceEEe
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISN-YLHIKGVNFDL-SHVIQDSSSY-----------------SGVKHIG 217 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~v~~~a~~~-----------------~ri~~~~ 217 (233)
..++..++ .....+|||||||+|.++..+++. .|+.+++.+|+ |..++.|+++ ++|+++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34555555 666789999999999999999998 58899999998 5566666541 5899999
Q ss_pred cCcCCC---CCCC--CEEEe
Q 039903 218 GIMLER---IPKG--DAILI 232 (233)
Q Consensus 218 gD~f~~---~P~~--D~~~l 232 (233)
+|+.+. ++.+ |+|++
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~ 193 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVAL 193 (336)
T ss_dssp SCTTCCC-------EEEEEE
T ss_pred CChHHcccccCCCCeeEEEE
Confidence 999873 4442 98875
No 145
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=98.04 E-value=6.2e-06 Score=63.63 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=50.5
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC--CCCC-C-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE--RIPK-G-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~--~~P~-~-D~~~l 232 (233)
.+...+|+|||||+|.++..++++ ..+++.+|+ |..++.|+++ ++|+++.+|+.. +.+. . |++++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~ 95 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIF 95 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence 456689999999999999999998 788999998 5577777653 689999977654 2333 3 88764
No 146
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=98.03 E-value=8.4e-06 Score=64.92 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=51.6
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----------CCceEEecCcCC-CCCCC--CEEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----------SGVKHIGGIMLE-RIPKG--DAIL 231 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~-~~P~~--D~~~ 231 (233)
+...+|||||||+|.++..++++ ..+++.+|+ |..++.+++. ++++++.+|+.+ ++|.. |+++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 45689999999999999999998 668999998 5577666541 268999999998 66653 9887
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
+
T Consensus 107 ~ 107 (235)
T 3sm3_A 107 M 107 (235)
T ss_dssp E
T ss_pred E
Confidence 5
No 147
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.03 E-value=3.9e-06 Score=66.28 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=52.8
Q ss_pred cCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCC--C-CCEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIP--K-GDAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P--~-~D~~~l 232 (233)
.+..+|||||||+|..+..+++..| +.+++.+|+ |..++.++++ ++|+++.+|..+.+| . -|++++
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 132 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFM 132 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEE
Confidence 4567999999999999999999998 889999998 5677777642 579999999986323 2 377764
No 148
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=98.02 E-value=5.4e-06 Score=68.76 Aligned_cols=65 Identities=14% Similarity=-0.033 Sum_probs=53.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCC-C-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPK-G-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l 232 (233)
+...+|+|+|||+|.++..++++.+. +++.+|+ |..++.++++ ++++++.+|+++..+. . |++++
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~ 198 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM 198 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEE
Confidence 44689999999999999999999887 8999998 5677776642 4699999999984433 3 88875
No 149
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.02 E-value=1.5e-05 Score=64.28 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=56.7
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCC-CC-C
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERI-PK-G 227 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~-P~-~ 227 (233)
.++..++ .....+|+|+|||+|.++..++++ ..+++.+|. |+.++.++++ ++++++.+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4445554 566789999999999999999998 778999997 5577766542 68999999999865 54 3
Q ss_pred -CEEEe
Q 039903 228 -DAILI 232 (233)
Q Consensus 228 -D~~~l 232 (233)
|++++
T Consensus 159 ~D~v~~ 164 (248)
T 2yvl_A 159 FHAAFV 164 (248)
T ss_dssp BSEEEE
T ss_pred ccEEEE
Confidence 99875
No 150
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.02 E-value=1.3e-05 Score=63.91 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=51.5
Q ss_pred ccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeechH-HHh----hccCCCCceEEecCcCCC-----CCCC-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDLSH-VIQ----DSSSYSGVKHIGGIMLER-----IPKG-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-v~~----~a~~~~ri~~~~gD~f~~-----~P~~-D~~~l 232 (233)
.....+|+|+|||+|.++..++++. |..+++.+|..+ .++ .++..++|+++.+|+.+. ++.. |++++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence 4566799999999999999999985 678899999854 333 334447899999999872 2333 88874
No 151
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.01 E-value=6e-06 Score=68.31 Aligned_cols=67 Identities=10% Similarity=-0.003 Sum_probs=55.2
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCC-CCCC-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLER-IPKG-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~-~P~~-D~~~l 232 (233)
+.+..+|+|+|||+|.++..++++.+..+++.+|+ |..++.++++ ++++++.+|+++. .+.. |++++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~ 192 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIM 192 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEE
Confidence 45668999999999999999999999889999998 6688777653 5789999999985 2223 88876
No 152
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=98.01 E-value=8.8e-06 Score=64.11 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=51.9
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCCCCceEEecCcCC-CCCC-C-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSYSGVKHIGGIMLE-RIPK-G-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~P~-~-D~~~l 232 (233)
+....+|||||||+|.++..++++ ..+++.+|+ |..++.+++.-+++++.+|+.+ + +. . |+|+.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 108 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWA 108 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEe
Confidence 455679999999999999999987 568999998 5677777765578889999987 5 44 3 98875
No 153
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.00 E-value=8.4e-06 Score=66.16 Aligned_cols=63 Identities=16% Similarity=0.056 Sum_probs=51.4
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC-----CCceEEecCcCC-CCCC-CCEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY-----SGVKHIGGIMLE-RIPK-GDAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~-----~ri~~~~gD~f~-~~P~-~D~~~l 232 (233)
....+|+|||||.|-++..+. |..+.+.+|+. ..++.++++ .+.++..+|+.. +.|. +|++++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLl 174 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALI 174 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHH
Confidence 457899999999999999888 99999999995 467666553 678899999998 5555 499954
No 154
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.00 E-value=3.9e-06 Score=69.83 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=53.7
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCC--CcEEEeech-HHHhhccCC--CCceEEecCcCC-CCCC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLH--IKGVNFDLS-HVIQDSSSY--SGVKHIGGIMLE-RIPK 226 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~v~Dlp-~v~~~a~~~--~ri~~~~gD~f~-~~P~ 226 (233)
.+++.++ .....+|+|||||+|.++..++++.+. .+++.+|+. +.++.++++ ++++++.+|+++ ++|.
T Consensus 33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 33 AIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 4555555 566789999999999999999998765 668999984 567766653 789999999998 6554
No 155
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.00 E-value=8.3e-06 Score=63.29 Aligned_cols=64 Identities=14% Similarity=-0.011 Sum_probs=50.8
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCC---CCC--CCEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLER---IPK--GDAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~P~--~D~~~l 232 (233)
+..+|+|+|||+|.++..++++ +..+++.+|+ |+.++.++++ ++++++.+|+.+. ++. .|++++
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~ 119 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLA 119 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEE
Confidence 4578999999999999988774 6678999998 5677777653 5899999999872 333 399875
No 156
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=97.99 E-value=6.1e-06 Score=63.45 Aligned_cols=71 Identities=20% Similarity=0.144 Sum_probs=55.3
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCC---C
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPK---G 227 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~---~ 227 (233)
+++.++ .....+|+|+|||+|.++..+++.. .+++.+|. |..++.++++ ++++++.+|+.+++|. .
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 344444 5666899999999999999999987 78999998 5677766542 5899999999875543 3
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+++.
T Consensus 102 D~v~~ 106 (192)
T 1l3i_A 102 DIAVV 106 (192)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 157
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=97.99 E-value=5.8e-06 Score=66.33 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=49.1
Q ss_pred ceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCC-C-CEEEe
Q 039903 170 KQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPK-G-DAILI 232 (233)
Q Consensus 170 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l 232 (233)
.+|||||||+|.++..+++ +..+++.+|+ |..++.+++. ++|+++.+|+.+..|. . |+|+.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~ 138 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFD 138 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEE
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEE
Confidence 5999999999999999976 6778999998 5577766542 4699999999984454 3 98874
No 158
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=97.99 E-value=5e-06 Score=68.91 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=53.9
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC----------CCCceEEecCcCC-C---
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS----------YSGVKHIGGIMLE-R--- 223 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~gD~f~-~--- 223 (233)
+.+.++ ..+..+|||||||+|.++..++++.+ +++.+|+ |..++.+++ ..++.+..+|+.+ +
T Consensus 49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 49 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 334443 34568999999999999999999854 8999998 457776643 1578999999988 5
Q ss_pred CCCC--CEEEe
Q 039903 224 IPKG--DAILI 232 (233)
Q Consensus 224 ~P~~--D~~~l 232 (233)
++.+ |+|+.
T Consensus 126 ~~~~~fD~V~~ 136 (293)
T 3thr_A 126 PAGDGFDAVIC 136 (293)
T ss_dssp CCTTCEEEEEE
T ss_pred ccCCCeEEEEE
Confidence 5653 99875
No 159
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=97.98 E-value=1.9e-05 Score=62.51 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=54.5
Q ss_pred cHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCCCCceEEecCcCC---CCCCC--C
Q 039903 155 VTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSYSGVKHIGGIMLE---RIPKG--D 228 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~gD~f~---~~P~~--D 228 (233)
....+++.++ .+..+|+|||||+|.++..+++. + .+++.+|. +..++.+++. ..+++.+|+.+ ++|.+ |
T Consensus 21 ~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD 95 (230)
T 3cc8_A 21 VNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFD 95 (230)
T ss_dssp CCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEE
T ss_pred HHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccC
Confidence 3345556544 45689999999999999999998 5 88999998 5577777653 24788999875 34443 8
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
+++.
T Consensus 96 ~v~~ 99 (230)
T 3cc8_A 96 CVIF 99 (230)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 160
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=97.98 E-value=1.4e-05 Score=67.53 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=57.2
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCC-CC-
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIP-KG- 227 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P-~~- 227 (233)
.+++.+. .....+|+|||||.|.++..+++..+ +.+++.+|+ |+.++.++++ ++|+++.+|+.+..| .+
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence 3445454 56668999999999999999999988 488999998 5577766542 569999999988443 22
Q ss_pred -CEEEe
Q 039903 228 -DAILI 232 (233)
Q Consensus 228 -D~~~l 232 (233)
|+|+.
T Consensus 145 fD~Iv~ 150 (317)
T 1dl5_A 145 YDVIFV 150 (317)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 88875
No 161
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=97.98 E-value=1.1e-05 Score=64.72 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=51.3
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCcCC-CCCCC-CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~P~~-D~~~l 232 (233)
+..+|||||||+|.++..++++ ..+++.+|. |..++.+++. .+++++.+|+.+ ++|.. |+++.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 107 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITC 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEE
Confidence 4579999999999999999998 457999998 5677777653 289999999988 66644 99875
No 162
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=97.97 E-value=1e-05 Score=70.01 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=53.2
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC-------CCceEEecCcCC-CCCCC-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY-------SGVKHIGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l 232 (233)
..+..+|||||||+|.++..++++. ..+++.+|..+.++.+++. ++|+++.+|+.+ ++|.. |+|+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~ 135 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 135 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEE
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEE
Confidence 4556899999999999999999973 3489999998777666542 679999999988 67654 99874
No 163
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.97 E-value=3.6e-06 Score=67.80 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=50.1
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC-----CCceEEecCcCC---CCCCC--CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY-----SGVKHIGGIMLE---RIPKG--DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~-----~ri~~~~gD~f~---~~P~~--D~~~l 232 (233)
....+|||||||+|.++..+++..+. +++.+|+. ..++.|++. .+++++.+|+.+ ++|.+ |+|+.
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 134 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEE
Confidence 44578999999999999999765443 88999984 577766542 579999999876 46653 98875
No 164
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=97.97 E-value=8.2e-06 Score=65.83 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=47.9
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC-------CCceEEecCcCC
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE 222 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~ 222 (233)
..+..+|||||||+|..+..+++.+| ..+++.+|. |..++.++++ ++|+++.+|+.+
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE 123 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 45568999999999999999999998 789999998 5677766543 469999999876
No 165
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=97.96 E-value=2.2e-06 Score=69.75 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=53.0
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCC--------CC-
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIP--------KG- 227 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P--------~~- 227 (233)
..+..+|||||||+|..+..+++..| +.+++.+|+ |+.++.|+++ ++|+++.+|..+.+| ..
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 34568999999999999999999987 889999998 4566666542 589999999987322 33
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|++++
T Consensus 138 D~V~~ 142 (242)
T 3r3h_A 138 DFIFI 142 (242)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88875
No 166
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=97.96 E-value=4.2e-06 Score=68.26 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=53.7
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC-------CCceEEecCcCCC---C------CCC
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLER---I------PKG 227 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~------P~~ 227 (233)
..+..+|||||||+|..+..+++..| +.+++.+|+ |+.++.|+++ ++|+++.+|..+. + +..
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999998 789999998 5677766542 5899999998762 2 233
Q ss_pred -CEEEe
Q 039903 228 -DAILI 232 (233)
Q Consensus 228 -D~~~l 232 (233)
|++++
T Consensus 157 fD~V~~ 162 (247)
T 1sui_A 157 YDFIFV 162 (247)
T ss_dssp BSEEEE
T ss_pred EEEEEE
Confidence 99875
No 167
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=97.96 E-value=8.4e-06 Score=70.57 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=49.7
Q ss_pred cceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccC----C---CCceEEecCcCC-CCCCC-CEEE
Q 039903 169 IKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSS----Y---SGVKHIGGIMLE-RIPKG-DAIL 231 (233)
Q Consensus 169 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~----~---~ri~~~~gD~f~-~~P~~-D~~~ 231 (233)
.++|||||||+|.++...+++. .-+++.+|..+.++.|++ + ++|+++.+|+.+ ++|.. |+++
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dviv 154 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIV 154 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEE
T ss_pred CCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEE
Confidence 3789999999999988777653 347899998776666654 2 789999999998 78874 9885
No 168
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=97.96 E-value=1.3e-05 Score=66.21 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=56.4
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCcCC-CCCCC-C
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLE-RIPKG-D 228 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~P~~-D 228 (233)
..+++.++ .....+|||||||+|.++..++++ ..+++.+|. |..++.+++. .+++++.+|+.+ +.+.. |
T Consensus 110 ~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD 186 (286)
T 3m70_A 110 GDVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYD 186 (286)
T ss_dssp HHHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEE
T ss_pred HHHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCcc
Confidence 45555555 446689999999999999999998 568999998 4577766542 289999999998 44444 9
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
+|+.
T Consensus 187 ~i~~ 190 (286)
T 3m70_A 187 FIVS 190 (286)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 169
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=97.96 E-value=5.4e-06 Score=70.73 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=53.8
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC----------CCCceEEecCcCC---CCCC-C-CEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS----------YSGVKHIGGIMLE---RIPK-G-DAI 230 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~gD~f~---~~P~-~-D~~ 230 (233)
.+..+|||||||+|..++.+++..|..+++.+|+ |.+++.|++ .+||+++.+|.++ ..+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888899999998 567776653 2689999999876 2343 3 988
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
++
T Consensus 199 i~ 200 (334)
T 1xj5_A 199 IV 200 (334)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 170
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=97.96 E-value=1e-05 Score=66.12 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=53.9
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC--CCceEEecCcCC-CCCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY--SGVKHIGGIMLE-RIPK 226 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~--~ri~~~~gD~f~-~~P~ 226 (233)
..+++..+ .....+|+|||||+|.++..++++ +..+++.+|+. ..++.++++ ++++++.+|+.+ ++|.
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence 34556555 566689999999999999999987 56789999985 466666653 679999999998 6664
No 171
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=97.96 E-value=9.4e-06 Score=65.66 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=53.8
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC-------CCceEEecCcCCC---C------CCC
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLER---I------PKG 227 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~------P~~ 227 (233)
..+..+|||||||+|..+..++++.| +.+++.+|+ |+.++.++++ +||+++.+|.++. + +..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999988 789999998 5677766542 5899999999862 2 233
Q ss_pred -CEEEe
Q 039903 228 -DAILI 232 (233)
Q Consensus 228 -D~~~l 232 (233)
|++++
T Consensus 148 fD~I~~ 153 (237)
T 3c3y_A 148 YDFGFV 153 (237)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 88875
No 172
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=97.96 E-value=7.6e-06 Score=66.99 Aligned_cols=64 Identities=9% Similarity=-0.003 Sum_probs=50.1
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccC-----------------------CCCceEEecCcCC
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSS-----------------------YSGVKHIGGIMLE 222 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~-----------------------~~ri~~~~gD~f~ 222 (233)
....+|||||||+|..+..|+++ ..+++.+|+. ..++.|++ ..+|+++.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 34579999999999999999987 5689999985 56766532 1579999999998
Q ss_pred -CCC--CC-CEEEe
Q 039903 223 -RIP--KG-DAILI 232 (233)
Q Consensus 223 -~~P--~~-D~~~l 232 (233)
+.+ .. |+|+.
T Consensus 145 l~~~~~~~FD~V~~ 158 (252)
T 2gb4_A 145 LPRANIGKFDRIWD 158 (252)
T ss_dssp GGGGCCCCEEEEEE
T ss_pred CCcccCCCEEEEEE
Confidence 543 23 98874
No 173
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=97.95 E-value=7.3e-06 Score=65.73 Aligned_cols=63 Identities=11% Similarity=0.099 Sum_probs=50.7
Q ss_pred ceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC--------CCceEEecCcCCC---CCC-C-CEEEe
Q 039903 170 KQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY--------SGVKHIGGIMLER---IPK-G-DAILI 232 (233)
Q Consensus 170 ~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~--------~ri~~~~gD~f~~---~P~-~-D~~~l 232 (233)
.+|+|||||+|..+..++++.| +.+++.+|+ |+.++.|+++ +||+++.+|..+. ++. . |++++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 3999999999999999999986 889999998 4566666542 4899999998872 323 3 99876
No 174
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.95 E-value=6.6e-06 Score=66.25 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=50.9
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCC--CCEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPK--GDAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~--~D~~~l 232 (233)
...+|+|||||+|.++..+++.. .+++.+|+ |..++.++++ ++|+++.+|+.+..+. .|+|++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 150 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFL 150 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEE
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEE
Confidence 45799999999999999999974 78999998 5577776643 4899999999983343 398875
No 175
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=97.95 E-value=6.7e-06 Score=69.23 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=53.4
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC----------CCCceEEecCcCCC--CCC-C-CEEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS----------YSGVKHIGGIMLER--IPK-G-DAIL 231 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~--~P~-~-D~~~ 231 (233)
.+..+|||||||+|.++..++++.|..+++.+|+ |.+++.+++ .+||+++.+|.++. .+. . |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888899999998 567776653 36899999998762 222 3 8887
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
+
T Consensus 174 ~ 174 (304)
T 2o07_A 174 T 174 (304)
T ss_dssp E
T ss_pred E
Confidence 4
No 176
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=97.94 E-value=1.9e-05 Score=62.99 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=55.5
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----CCceEEecCcCCCCCC--C-CE
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----SGVKHIGGIMLERIPK--G-DA 229 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----~ri~~~~gD~f~~~P~--~-D~ 229 (233)
.+++.+. .....+|+|||||+|.++..+++.. .+++.+|. |..++.+++. .+++++.+|+.+..|. . |+
T Consensus 61 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 137 (231)
T 1vbf_A 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (231)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccE
Confidence 4445554 5666899999999999999999986 68999998 5577766653 3899999999885442 2 88
Q ss_pred EEe
Q 039903 230 ILI 232 (233)
Q Consensus 230 ~~l 232 (233)
++.
T Consensus 138 v~~ 140 (231)
T 1vbf_A 138 VVV 140 (231)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 177
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=97.94 E-value=7.7e-06 Score=68.65 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=52.0
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC------CCCceEEecCcCC-CCCCCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS------YSGVKHIGGIMLE-RIPKGD 228 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~gD~f~-~~P~~D 228 (233)
..+++.++ .....+|+|||||+|.++..++++ ..+++.+|+ +..++.+++ .++++++.+|+.+ +.+..|
T Consensus 32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D 108 (299)
T 2h1r_A 32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFD 108 (299)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCS
T ss_pred HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCC
Confidence 34555555 566689999999999999999987 457999998 456666553 2689999999998 565558
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
+++.
T Consensus 109 ~Vv~ 112 (299)
T 2h1r_A 109 VCTA 112 (299)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 178
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=97.93 E-value=8e-06 Score=70.63 Aligned_cols=67 Identities=10% Similarity=-0.022 Sum_probs=55.8
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-CCCC-C-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPK-G-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~-~-D~~~l 232 (233)
+.+..+|+|+|||+|.+++.+++..+..+++.+|+ |.+++.|+++ ++|+++.+|+.+ +.|. . |+++.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~ 292 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAIS 292 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEE
Confidence 46668999999999999999999988778999998 5577777653 589999999998 6654 3 88875
No 179
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=97.93 E-value=4.9e-06 Score=68.10 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=50.6
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----C-CceEEecCcCCCCCC--CCEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----S-GVKHIGGIMLERIPK--GDAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----~-ri~~~~gD~f~~~P~--~D~~~l 232 (233)
.+..+|+|||||+|.++..+++..+ +++.+|+ |..++.++++ . .++++.+|+.+.+|. .|+++.
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~ 190 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVA 190 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEE
Confidence 4568999999999999999999776 8999998 5677776653 1 289999999886654 288874
No 180
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.93 E-value=8.6e-06 Score=64.17 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=49.7
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC--CCCC-C-CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE--RIPK-G-DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~--~~P~-~-D~~~l 232 (233)
...+|+|+|||+|.++..++++.. .+++.+|+ |..++.++++ ++|+++.+|+.+ +.+. . |++++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~ 128 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV 128 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence 347899999999999999888754 37999998 4577777653 589999999987 3333 3 88875
No 181
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=97.93 E-value=1.1e-05 Score=65.57 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=36.6
Q ss_pred CcceEEEecCCccHHHHHHHHH--cCCCcEEEeec-hHHHhhccC
Q 039903 168 QIKQLVDVGGGLGVNVNIIISN--YLHIKGVNFDL-SHVIQDSSS 209 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~--~P~l~~~v~Dl-p~v~~~a~~ 209 (233)
...+|+|+|||+|.++..+++. +|..+++.+|+ |..++.|+.
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~ 95 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAK 95 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHH
Confidence 4579999999999999999998 88889999999 567777764
No 182
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=97.93 E-value=1.4e-05 Score=66.09 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=50.4
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC---CCceEEecCcCC-CCCC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY---SGVKHIGGIMLE-RIPK 226 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~---~ri~~~~gD~f~-~~P~ 226 (233)
.+++..+ .... +|+|||||+|.++..++++. .+++.+|+. +.++.+++. ++++++.+|+++ ++|.
T Consensus 38 ~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~ 107 (271)
T 3fut_A 38 RIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEE 107 (271)
T ss_dssp HHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGG
T ss_pred HHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhh
Confidence 4555555 5555 99999999999999999985 578999984 466665542 689999999998 6653
No 183
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=97.92 E-value=8.2e-06 Score=68.37 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=52.3
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC----------CCCceEEecCcCCCC--C-CC-CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS----------YSGVKHIGGIMLERI--P-KG-DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~~--P-~~-D~~~l 232 (233)
+..+|+|||||+|..+..+++..|..+++++|+ |.+++.+++ .+||+++.+|.++.+ + .. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 457999999999999999999888899999998 567776643 268999999987632 2 33 98874
No 184
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=97.92 E-value=2e-05 Score=62.93 Aligned_cols=66 Identities=12% Similarity=0.193 Sum_probs=53.2
Q ss_pred ccCcceEEEecCC-ccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCc--CCCCCCC--CEEEe
Q 039903 166 FEQIKQLVDVGGG-LGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIM--LERIPKG--DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG-~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~--f~~~P~~--D~~~l 232 (233)
.++..+|+||||| +|.++..+++.. ..+++.+|+ |..++.++++ .+++++.+|+ +.++|.+ |+++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEE
Confidence 4566899999999 999999999987 788999998 5677777653 3799999996 4566643 98874
No 185
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=97.91 E-value=7.2e-06 Score=66.09 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=51.3
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC-CCCCC--CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
...+|||||||+|.++..++++. ..+++.+|+ |..++.+++. .+++++.+|+.+ +.+.+ |+|++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 152 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI 152 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEE
Confidence 46899999999999999999987 568999998 5677766542 368999999887 55553 98875
No 186
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=97.91 E-value=6.2e-06 Score=69.36 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=53.3
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC----------CCCceEEecCcCC-CC--CC-C-CEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS----------YSGVKHIGGIMLE-RI--PK-G-DAI 230 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~gD~f~-~~--P~-~-D~~ 230 (233)
++..+|+|||||.|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|.++ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999999878889999999 557776653 2689999999987 21 33 3 988
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
+.
T Consensus 174 i~ 175 (304)
T 3bwc_A 174 II 175 (304)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 187
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=97.90 E-value=6.7e-06 Score=69.74 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=53.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC----------CCCceEEecCcCCCC---CCC-CEEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS----------YSGVKHIGGIMLERI---PKG-DAIL 231 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~~---P~~-D~~~ 231 (233)
.+..+|+|||||+|..++.+++..|..+++.+|+ |.+++.+++ .+|++++.+|.++.+ +.. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3458999999999999999999878899999998 567776653 258999999988732 333 8887
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
.
T Consensus 195 ~ 195 (321)
T 2pt6_A 195 V 195 (321)
T ss_dssp E
T ss_pred E
Confidence 4
No 188
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=97.90 E-value=1.2e-05 Score=63.53 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=55.0
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCCCCceEEecCcCCC-----CCCC--CE
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSYSGVKHIGGIMLER-----IPKG--DA 229 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~gD~f~~-----~P~~--D~ 229 (233)
.+++.+. .....+|||||||+|.++..+++. ..+++.+|+ |..++.+++..+++++.+|+.+. .+.. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 3445544 345589999999999999999998 568999998 56888888778889999888752 2222 88
Q ss_pred EEe
Q 039903 230 ILI 232 (233)
Q Consensus 230 ~~l 232 (233)
|+.
T Consensus 120 v~~ 122 (227)
T 3e8s_A 120 ICA 122 (227)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 189
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=97.90 E-value=1.7e-05 Score=74.62 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=53.9
Q ss_pred cCcceEEEecCCccHHHHHHHHHc-CCCcEEEeec-hHHHhhccC------------CCCceEEecCcCC-CCCC-C-CE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDL-SHVIQDSSS------------YSGVKHIGGIMLE-RIPK-G-DA 229 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~a~~------------~~ri~~~~gD~f~-~~P~-~-D~ 229 (233)
.+..+|||||||+|.++..+++.. |..+++.+|+ +..++.|++ .++|+++.+|+.+ +.+. . |+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 456899999999999999999998 5679999998 457777644 2579999999998 5554 3 99
Q ss_pred EEe
Q 039903 230 ILI 232 (233)
Q Consensus 230 ~~l 232 (233)
|+.
T Consensus 800 VV~ 802 (950)
T 3htx_A 800 GTC 802 (950)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 190
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=97.89 E-value=1.5e-05 Score=62.20 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=49.3
Q ss_pred eEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCcCC-CCCCC--CEEEe
Q 039903 171 QLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 171 ~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
+|+|||||+|.++..+++. ..+++.+|. +..++.+++. .+++++.+|+.+ ++|.+ |+++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVS 100 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEE
Confidence 9999999999999999987 568999998 4577776653 389999999998 66643 98874
No 191
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=97.88 E-value=3.6e-05 Score=67.77 Aligned_cols=74 Identities=14% Similarity=0.221 Sum_probs=54.4
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechH-HHhhc-------cC--------CCCceEEecCcC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSH-VIQDS-------SS--------YSGVKHIGGIML 221 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~~~a-------~~--------~~ri~~~~gD~f 221 (233)
.+++.+. .....+|||||||+|.++..+++.+|..+++.+|+.. .++.| ++ .++|+++.+|-+
T Consensus 233 ~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 233 DVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 3445554 5667899999999999999999999988999999854 55555 32 258999987544
Q ss_pred -CC--C----CCCCEEEe
Q 039903 222 -ER--I----PKGDAILI 232 (233)
Q Consensus 222 -~~--~----P~~D~~~l 232 (233)
.+ + ...|+|++
T Consensus 312 ~~~~~~~~~~~~FDvIvv 329 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILV 329 (433)
T ss_dssp TTCHHHHHHGGGCSEEEE
T ss_pred ccccccccccCCCCEEEE
Confidence 32 2 22499875
No 192
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=97.88 E-value=1.7e-05 Score=62.15 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=50.4
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCcCC-CCCCC--CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
.....+|+|||||+|.++..++.+ +..+++.+|. +..++.+++. .+++++.+|+.+ ++|.+ |+++.
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 95 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYS 95 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEE
Confidence 345579999999999985555543 6779999998 4577766542 689999999998 67653 98874
No 193
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.88 E-value=4.7e-06 Score=63.12 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=50.4
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----C-CceEEecCcCCCCC-------CCCEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----S-GVKHIGGIMLERIP-------KGDAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----~-ri~~~~gD~f~~~P-------~~D~~~l 232 (233)
...+|+|+|||+|.++..++++.++ ++.+|+ |..++.++++ . +++++.+|+.+..| ..|+++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~ 116 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEE
Confidence 5578999999999999999999877 999998 5677777653 2 89999999987322 2388764
No 194
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.88 E-value=2.9e-05 Score=67.67 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=54.9
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeech-HHHhhccCCCCceEEecCcCCCCCC-C-CEEEe
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDLS-HVIQDSSSYSGVKHIGGIMLERIPK-G-DAILI 232 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~v~~~a~~~~ri~~~~gD~f~~~P~-~-D~~~l 232 (233)
.+++.+. ..+..+|+|+|||+|.++..+++++ +..+++.+|+. ..++.| ++++++.+|+++..+. . |+|+.
T Consensus 30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 3444444 3345699999999999999999988 78899999985 466555 6899999999985443 3 98875
No 195
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=97.87 E-value=8.4e-06 Score=68.89 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=52.8
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC-----------CCCceEEecCcCCC--C-CCC-CEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS-----------YSGVKHIGGIMLER--I-PKG-DAI 230 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~--~-P~~-D~~ 230 (233)
.+..+|+|||||+|..+..+++..|..+++++|+ |.+++.+++ .+||+++.+|.++. . +.. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4558999999999999999999888889999998 457776543 26899999999873 2 233 888
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
++
T Consensus 156 i~ 157 (314)
T 1uir_A 156 II 157 (314)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 196
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.86 E-value=2.6e-05 Score=61.15 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=50.2
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----C-CceEEecCcCCCCCC-CCEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----S-GVKHIGGIMLERIPK-GDAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----~-ri~~~~gD~f~~~P~-~D~~~l 232 (233)
....+|+|+|||+|.++..+++..+ -+++.+|+ |..++.++++ . +++++.+|+.+ +|. .|++++
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~ 118 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIM 118 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEE
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEE
Confidence 3457999999999999999998743 37999998 5677776653 2 79999999987 343 488875
No 197
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=97.86 E-value=2.7e-05 Score=60.89 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=47.1
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCCCCceEEecCcCC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSYSGVKHIGGIMLE 222 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~f~ 222 (233)
++.+.+.-+++..+|||+|||+|.++..++++ ..+++.+|+.+. ...++|+++.+|+.+
T Consensus 15 ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~ 73 (191)
T 3dou_A 15 FLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFK 73 (191)
T ss_dssp HHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTS
T ss_pred HHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccC
Confidence 45555553466789999999999999999998 778999998653 223689999999987
No 198
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.85 E-value=1.1e-05 Score=66.11 Aligned_cols=66 Identities=11% Similarity=0.208 Sum_probs=51.9
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccC----CCCceEEecCcCC-CCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSS----YSGVKHIGGIMLE-RIP 225 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~----~~ri~~~~gD~f~-~~P 225 (233)
..+++..+ .....+|+|||||+|.++..++++. .+++.+|+. +.++.+++ .++++++.+|+++ +++
T Consensus 19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 34555555 5667899999999999999999985 578999984 56666654 3789999999998 554
No 199
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=97.85 E-value=2.3e-05 Score=64.51 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=52.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----------CCceEEecCcCCCCCCC-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----------SGVKHIGGIMLERIPKG-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----------~ri~~~~gD~f~~~P~~-D~~~l 232 (233)
.+..+|+|||||+|..+.++++. + .+++.+|+ |.+++.|+++ +|++++.+|.++-. .. |+|++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~ 145 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFC 145 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEE
Confidence 45589999999999999999998 8 89999998 5688887653 58999999998744 33 88875
No 200
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=97.85 E-value=9.4e-06 Score=67.55 Aligned_cols=66 Identities=18% Similarity=0.113 Sum_probs=53.4
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC----------CCCceEEecCcCCC---CCCC-CEEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS----------YSGVKHIGGIMLER---IPKG-DAIL 231 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~---~P~~-D~~~ 231 (233)
.+..+|+|||||.|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999999888899999998 567776653 26899999999862 2333 8887
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
+
T Consensus 157 ~ 157 (283)
T 2i7c_A 157 V 157 (283)
T ss_dssp E
T ss_pred E
Confidence 5
No 201
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=97.84 E-value=9.4e-06 Score=68.64 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=53.1
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC----------CCCceEEecCcCCCC--CC-C-CEEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS----------YSGVKHIGGIMLERI--PK-G-DAIL 231 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~~--P~-~-D~~~ 231 (233)
.+..+|+|||||+|..++.+++..|..+++.+|+ |.+++.|++ .+||+++.+|.++.+ +. . |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4558999999999999999999888899999998 567776653 268999999998732 22 3 8887
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
+
T Consensus 187 ~ 187 (314)
T 2b2c_A 187 T 187 (314)
T ss_dssp E
T ss_pred E
Confidence 4
No 202
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=97.83 E-value=3.5e-05 Score=67.15 Aligned_cols=75 Identities=7% Similarity=-0.002 Sum_probs=57.9
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCC--------------------------------------CcEEEe
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLH--------------------------------------IKGVNF 198 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~~v~ 198 (233)
..++.... |.+...++|.+||+|.++++.+....+ .+++.+
T Consensus 191 a~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 269 (393)
T 3k0b_A 191 AALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGG 269 (393)
T ss_dssp HHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 34555555 877889999999999999988876554 569999
Q ss_pred ec-hHHHhhccCC-------CCceEEecCcCC-CCCCC-CEEEe
Q 039903 199 DL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 199 Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l 232 (233)
|+ |.+++.|+.+ ++|+++.+|+++ +.|.. |+|+.
T Consensus 270 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~ 313 (393)
T 3k0b_A 270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVA 313 (393)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEE
Confidence 98 5578777653 579999999998 44443 98875
No 203
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=97.83 E-value=2.3e-05 Score=62.64 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=53.0
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcC------CCcEEEeec-hHHHhhccC-----------CCCceEEecCcCCCCCC-
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYL------HIKGVNFDL-SHVIQDSSS-----------YSGVKHIGGIMLERIPK- 226 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P------~l~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~P~- 226 (233)
.....+|+|||||+|.++..+++..+ ..+++.+|+ |+.++.+++ .++|+++.+|..+++|.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 44557999999999999999999766 368999997 456666654 25899999999987665
Q ss_pred C--CEEEe
Q 039903 227 G--DAILI 232 (233)
Q Consensus 227 ~--D~~~l 232 (233)
+ |+|+.
T Consensus 162 ~~fD~I~~ 169 (227)
T 1r18_A 162 APYNAIHV 169 (227)
T ss_dssp CSEEEEEE
T ss_pred CCccEEEE
Confidence 3 88864
No 204
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=97.82 E-value=1.4e-05 Score=66.42 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=51.4
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhcc----------------CCCCceEEecCcCCCC--CCC
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSS----------------SYSGVKHIGGIMLERI--PKG 227 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~----------------~~~ri~~~~gD~f~~~--P~~ 227 (233)
.+..+|+|||||+|.++..+++. |..+++++|+ |.+++.++ ..+||+++.+|.++.+ +..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 34579999999999999999998 8889999998 56776654 2368999999987522 333
Q ss_pred -CEEEe
Q 039903 228 -DAILI 232 (233)
Q Consensus 228 -D~~~l 232 (233)
|+|++
T Consensus 153 fD~Ii~ 158 (281)
T 1mjf_A 153 FDVIIA 158 (281)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 88874
No 205
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.81 E-value=2.8e-05 Score=67.53 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=57.7
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCC--------------------------------------CcEEEe
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLH--------------------------------------IKGVNF 198 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~~v~ 198 (233)
..++.... |.+..+++|++||+|.++++.+..-.+ .+++.+
T Consensus 185 a~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 263 (385)
T 3ldu_A 185 AGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGY 263 (385)
T ss_dssp HHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEE
T ss_pred HHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEE
Confidence 34445445 777789999999999999998876432 679999
Q ss_pred ec-hHHHhhccCC-------CCceEEecCcCC-CCCCC-CEEEe
Q 039903 199 DL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 199 Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l 232 (233)
|+ |.+++.|+.+ ++|+++.+|+++ +.|.. |+++.
T Consensus 264 Did~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~ 307 (385)
T 3ldu_A 264 DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIIT 307 (385)
T ss_dssp ESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEE
Confidence 98 5688887764 479999999998 44443 98875
No 206
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=97.81 E-value=2.3e-05 Score=64.79 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=51.4
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCC-CC-CCC--CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RI-PKG--DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~-P~~--D~~~l 232 (233)
....+|||||||+|.++..+++. +..+++.+|+ |..++.+++. ++|+++.+|+.+ ++ +.+ |+|+.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 139 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISS 139 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEE
Confidence 55689999999999999998775 6668999998 5577766542 469999999998 66 343 98874
No 207
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.80 E-value=1.2e-05 Score=63.22 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=48.9
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC--------CCceEEecCcCCCCC-----C-CCEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY--------SGVKHIGGIMLERIP-----K-GDAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~--------~ri~~~~gD~f~~~P-----~-~D~~~l 232 (233)
+..+|||+|||+|.++..++++.+ .+++.+|+. ..++.++++ ++|+++.+|+++..+ . .|++++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 347899999999999999887754 579999984 577777652 589999999987322 2 477765
No 208
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=97.79 E-value=4e-05 Score=61.01 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=52.6
Q ss_pred ccCcceEEEecCCccHHHHHHHHHc-----CCCcEEEeec-hHHHhhccCC-----------CCceEEecCcCCCC----
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNY-----LHIKGVNFDL-SHVIQDSSSY-----------SGVKHIGGIMLERI---- 224 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~-----P~l~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~~~---- 224 (233)
.....+|+|||||+|.++..+++.. |+.+++.+|. |+.++.++++ ++|+++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4556899999999999999999986 6789999998 4566666542 48999999998844
Q ss_pred C-C--CCEEEe
Q 039903 225 P-K--GDAILI 232 (233)
Q Consensus 225 P-~--~D~~~l 232 (233)
+ . .|+|+.
T Consensus 158 ~~~~~fD~I~~ 168 (227)
T 2pbf_A 158 KELGLFDAIHV 168 (227)
T ss_dssp HHHCCEEEEEE
T ss_pred ccCCCcCEEEE
Confidence 2 2 288864
No 209
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=97.78 E-value=5e-05 Score=59.88 Aligned_cols=62 Identities=18% Similarity=0.088 Sum_probs=46.5
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCCCCceEEecCcCC-CCCCC--CEEEe
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSYSGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
.+++.+.......+|+|||||+|.++..++ .+++.+|+.+. +++++.+|+.+ ++|.+ |+++.
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEE
Confidence 344544324456899999999999998883 67899998654 67889999988 66653 88874
No 210
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.77 E-value=9.8e-06 Score=65.26 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=52.1
Q ss_pred cCcceEEEecCCccHHHHHHHHHcC-CCcEEEeec-hHHHhhccCC-------CCceEEecCcCCC---CC-----CC-C
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLER---IP-----KG-D 228 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~P-----~~-D 228 (233)
.+..+|||||||+|..+..+++..| +.+++.+|. |+.++.|+++ ++|+++.+|..+. +| .. |
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 4557999999999999999999988 789999998 5577766542 5799999998652 21 33 8
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
++++
T Consensus 151 ~V~~ 154 (232)
T 3cbg_A 151 LIFI 154 (232)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 211
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=97.76 E-value=5.3e-05 Score=65.81 Aligned_cols=76 Identities=17% Similarity=0.094 Sum_probs=58.3
Q ss_pred HHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCC--------------------------------------CcEEE
Q 039903 156 TNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLH--------------------------------------IKGVN 197 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~~v 197 (233)
+..++.... |.....++|.+||+|.++++.+....+ .+++.
T Consensus 183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 344555545 888889999999999999998876554 56999
Q ss_pred eec-hHHHhhccCC-------CCceEEecCcCC-CCCCC-CEEEe
Q 039903 198 FDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 198 ~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l 232 (233)
+|. |.+++.|+.+ ++|+++.+|+++ +.|.. |+++.
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~ 306 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLIS 306 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEE
Confidence 998 4578777653 579999999998 44443 98875
No 212
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=97.76 E-value=2.2e-05 Score=64.32 Aligned_cols=66 Identities=9% Similarity=0.068 Sum_probs=50.0
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----CCceEEecCcCC-CCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----SGVKHIGGIMLE-RIP 225 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~P 225 (233)
..+++.++ .....+|+|||||+|.++. + ++.++.+++.+|+ |+.++.+++. ++++++.+|+.+ ++|
T Consensus 11 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 11 DSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred HHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence 44555555 5666789999999999999 5 4555555999998 4577777653 589999999998 554
No 213
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=97.74 E-value=1.6e-05 Score=64.64 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=53.8
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC----CCceEEecCcCC-CCCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY----SGVKHIGGIMLE-RIPK 226 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~P~ 226 (233)
..+++.++ .....+|+|||||+|.++..++++. .+++.+|+ ++.++.++++ ++++++.+|+.+ ++|.
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCccc
Confidence 45566665 6667899999999999999999985 78999998 4577777653 589999999998 6663
No 214
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=97.73 E-value=4.4e-05 Score=67.29 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=54.5
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCC-----C
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIP-----K 226 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P-----~ 226 (233)
+++.++ ..+..+|+|+|||+|.++..++++ ..+++.+|. ++.++.|+++ ++++|+.+|+++.++ .
T Consensus 278 ~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~ 354 (433)
T 1uwv_A 278 ALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 (433)
T ss_dssp HHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGT
T ss_pred HHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhc
Confidence 334444 455679999999999999999988 678999998 5677777653 589999999998432 2
Q ss_pred --CCEEEe
Q 039903 227 --GDAILI 232 (233)
Q Consensus 227 --~D~~~l 232 (233)
.|++++
T Consensus 355 ~~fD~Vv~ 362 (433)
T 1uwv_A 355 NGFDKVLL 362 (433)
T ss_dssp TCCSEEEE
T ss_pred CCCCEEEE
Confidence 398875
No 215
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=97.73 E-value=3.5e-05 Score=60.53 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=48.7
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCC-cEEEeec-hHHHhhccCC-CCceEEecCcCC-CCCCC--CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHI-KGVNFDL-SHVIQDSSSY-SGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l-~~~v~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
...+|+|||||+|.++..+ .. +++.+|. |..++.+++. ++++++.+|+.+ ++|.+ |++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEE
Confidence 5679999999999999888 44 8999998 4577777654 789999999988 66653 98875
No 216
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=97.72 E-value=0.00012 Score=61.32 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=58.6
Q ss_pred HHHHHHHHhcchhcHHHHHHhccc-ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC---------
Q 039903 142 GVFNKAMLNHTSIVTNRIIDSSKG-FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY--------- 210 (233)
Q Consensus 142 ~~f~~am~~~~~~~~~~~~~~~~~-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~--------- 210 (233)
+.|+..+...- ...+++.+.. .....+|+|||||+|.++..+++ .+..+++.+|+. ..++.+++.
T Consensus 10 r~~~~~~k~~l---~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 85 (313)
T 3bgv_A 10 RNFNNWMKSVL---IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRD 85 (313)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSC
T ss_pred hhccHHHHHHH---HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhccc
Confidence 45666655422 2334443331 23568999999999999999988 467789999984 566666542
Q ss_pred ----CCceEEecCcCC-C----CC--C-C-CEEEe
Q 039903 211 ----SGVKHIGGIMLE-R----IP--K-G-DAILI 232 (233)
Q Consensus 211 ----~ri~~~~gD~f~-~----~P--~-~-D~~~l 232 (233)
.+++++.+|+.+ + ++ . . |+|+.
T Consensus 86 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~ 120 (313)
T 3bgv_A 86 SEYIFSAEFITADSSKELLIDKFRDPQMCFDICSC 120 (313)
T ss_dssp C-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEE
T ss_pred ccccceEEEEEecccccchhhhcccCCCCEEEEEE
Confidence 379999999987 4 43 2 3 88874
No 217
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.72 E-value=6.4e-05 Score=53.63 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=56.5
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhC--CCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQM--PSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~--~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
.+..|++.|... |+.|+.+||+.+ ++ +...+.+-|+.|...|+++.. ..+.|++|+.+..++..
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~----~rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL----ANGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC----STTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec----CCceEEECchHHHHHHH
Confidence 356788999876 599999999999 99 999999999999999999986 45699999999987765
No 218
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.71 E-value=5.8e-05 Score=59.84 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=47.0
Q ss_pred cceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCCCCceEEecCcCC-CCCCC--CEEEe
Q 039903 169 IKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSYSGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 169 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
..+|+|||||+|.++..++++ +.+|. +..++.+++. +++++.+|+.+ +++.+ |+++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~ 108 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALM 108 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEE
Confidence 679999999999999998775 88998 5677777765 89999999987 66653 98875
No 219
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=97.69 E-value=6.9e-05 Score=59.58 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=52.0
Q ss_pred ccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeec-hHHHhhccC-----------CCCceEEecCcCCCCC-C-C-CE
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDL-SHVIQDSSS-----------YSGVKHIGGIMLERIP-K-G-DA 229 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~P-~-~-D~ 229 (233)
.....+|+|||||+|.++..+++.. |..+++.+|+ |..++.+++ .++|+++.+|+.+..+ . . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3456799999999999999999985 7789999998 556666653 2489999999987433 2 2 88
Q ss_pred EEe
Q 039903 230 ILI 232 (233)
Q Consensus 230 ~~l 232 (233)
++.
T Consensus 155 i~~ 157 (226)
T 1i1n_A 155 IHV 157 (226)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 220
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=97.69 E-value=9.3e-05 Score=57.28 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=47.0
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcCC---------CcEEEeechHHHhhccCCCCceEE-ecCcCC
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLH---------IKGVNFDLSHVIQDSSSYSGVKHI-GGIMLE 222 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~---------l~~~v~Dlp~v~~~a~~~~ri~~~-~gD~f~ 222 (233)
+.+.+..+....+|||||||+|.++..+++++|. .+++.+|+.+.. ..++++++ .+|+.+
T Consensus 13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~ 82 (196)
T 2nyu_A 13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTD 82 (196)
T ss_dssp HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTS
T ss_pred HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCC
Confidence 3344442455689999999999999999999875 789999987631 23678999 999876
No 221
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=97.68 E-value=6.5e-05 Score=62.24 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=49.4
Q ss_pred cceEEEecCCccH----HHHHHHHHcC----CCcEEEeech-HHHhhccCC-----------------------------
Q 039903 169 IKQLVDVGGGLGV----NVNIIISNYL----HIKGVNFDLS-HVIQDSSSY----------------------------- 210 (233)
Q Consensus 169 ~~~vvDvGGG~G~----~~~~l~~~~P----~l~~~v~Dlp-~v~~~a~~~----------------------------- 210 (233)
..+|+|+|||+|. +++.+++..| +.+++..|+. .+++.|++.
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4689999999998 5666777766 4689999994 577776531
Q ss_pred --------CCceEEecCcCC-CCC-C-C-CEEEe
Q 039903 211 --------SGVKHIGGIMLE-RIP-K-G-DAILI 232 (233)
Q Consensus 211 --------~ri~~~~gD~f~-~~P-~-~-D~~~l 232 (233)
++|+|..+|+++ ++| . . |+|+.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~c 219 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFC 219 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEE
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEE
Confidence 269999999999 576 2 3 99875
No 222
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=97.68 E-value=1.4e-05 Score=65.54 Aligned_cols=66 Identities=14% Similarity=0.040 Sum_probs=54.6
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeechH-HHhhccCC-----CCceEEecCcCCCCCC--CCEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSH-VIQDSSSY-----SGVKHIGGIMLERIPK--GDAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~~~a~~~-----~ri~~~~gD~f~~~P~--~D~~~l 232 (233)
....+|+|||||.|-++..+...+|..+.+.+|+.+ .++.++++ .+.++...|+..+.|. +|++++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~ 204 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLL 204 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEE
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHH
Confidence 346899999999999999999999999999999964 67666553 5688999999995554 499964
No 223
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.67 E-value=5.8e-05 Score=61.52 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=49.0
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCCCCceEEecCcCC-CCCCC--CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSYSGVKHIGGIMLE-RIPKG--DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l 232 (233)
...+|||||||+|.++..++++ ..+++.+|. |..++.+++...-.++.+|+.+ ++|.+ |+++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEE
Confidence 5679999999999999999987 568999998 5577777653212388999987 66653 88874
No 224
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.64 E-value=4.8e-05 Score=63.13 Aligned_cols=66 Identities=14% Similarity=-0.007 Sum_probs=52.9
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCC--CCEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPK--GDAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~--~D~~~l 232 (233)
++...+|+|+|||+|.+++.++++ ...+++.+|+ |.+++.++++ ++|+++.+|.++-.+. +|.|+|
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~ 198 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM 198 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEE
Confidence 455689999999999999999886 5678999998 5677776653 7899999999984444 488776
No 225
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=97.61 E-value=9e-05 Score=61.06 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=47.5
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC--C------CceEE--ecCcCC-CCCC-CCEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY--S------GVKHI--GGIMLE-RIPK-GDAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~--~------ri~~~--~gD~f~-~~P~-~D~~~l 232 (233)
+....+|||||||+|.++..++++ -+++.+|+.+.+..+++. . +|.++ .+|+++ + +. .|+++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~V~s 146 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-VERTDVIMC 146 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-CCCCSEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC-CCCCcEEEE
Confidence 456689999999999999999987 679999986653333221 2 68999 999987 3 33 398874
No 226
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=97.61 E-value=7.6e-05 Score=62.95 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=54.5
Q ss_pred HhcccccCcceEEEecCCccHHHHHHHHHcC-CCcEEEeech-HHHhhccCC------CCceEEecCcCC-C-CCCC-CE
Q 039903 161 DSSKGFEQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDLS-HVIQDSSSY------SGVKHIGGIMLE-R-IPKG-DA 229 (233)
Q Consensus 161 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~v~~~a~~~------~ri~~~~gD~f~-~-~P~~-D~ 229 (233)
..++ .....+|+|+|||.|..+..+++..+ ..+++.+|+. ..++.++++ ++|+++.+|+.+ + .+.. |+
T Consensus 112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCE
Confidence 3344 56668999999999999999999975 5889999984 466666543 579999999987 3 2333 88
Q ss_pred EEe
Q 039903 230 ILI 232 (233)
Q Consensus 230 ~~l 232 (233)
|++
T Consensus 191 Il~ 193 (315)
T 1ixk_A 191 ILL 193 (315)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 227
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.61 E-value=4.6e-05 Score=49.26 Aligned_cols=56 Identities=9% Similarity=0.287 Sum_probs=47.9
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceecc
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLA 82 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt 82 (233)
.+..|.+.|...+ .++|..|||+.+++ +...+.+++..|...|++... ..+.|+++
T Consensus 11 ~~~~IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~----~~G~y~lg 66 (67)
T 2heo_A 11 LEQKILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP----SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE----ETTEEEEC
T ss_pred HHHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC----CCceEeeC
Confidence 3567899998764 48999999999999 999999999999999999875 46788764
No 228
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=97.61 E-value=7e-05 Score=61.62 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=40.1
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY 210 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~ 210 (233)
..+++.++ .....+|||||||+|.++..++++ ..+++.+|+. ..++.++++
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~ 86 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEA 86 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHH
Confidence 44555555 666789999999999999999987 4579999984 577777653
No 229
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=97.60 E-value=8.3e-05 Score=61.65 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=47.6
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCC--C------CceEE--ecCcCC-CCCC-CCEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSY--S------GVKHI--GGIMLE-RIPK-GDAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~--~------ri~~~--~gD~f~-~~P~-~D~~~l 232 (233)
+....+|||||||+|.++..++++ -+++.+|+.+.+..+++. . +|+++ .+|+.+ + +. .|+++.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~Vvs 154 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PFQADTVLC 154 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CCCCSEEEE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CCCcCEEEE
Confidence 456689999999999999999987 579999987653333221 2 78999 999987 3 33 398874
No 230
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.59 E-value=0.0001 Score=61.56 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=54.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccC-----------CCCceEEecCcCCCC--CC-C-CEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSS-----------YSGVKHIGGIMLERI--PK-G-DAI 230 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~--P~-~-D~~ 230 (233)
+++++|+=||||.|..++++++..|.-+++++|+ |.|++.+++ .+|++.+.+|-++-+ .. . |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5678999999999999999999777788999998 568887654 279999999999832 22 3 888
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
++
T Consensus 162 i~ 163 (294)
T 3o4f_A 162 IS 163 (294)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 231
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.54 E-value=6.4e-05 Score=61.69 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=49.9
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech--------HHHhhccCC-------CCceEEecCcCCC---CC--
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS--------HVIQDSSSY-------SGVKHIGGIMLER---IP-- 225 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp--------~v~~~a~~~-------~ri~~~~gD~f~~---~P-- 225 (233)
.....+|+|+|||+|.++..+++. ..+++.+|+. +.++.++.+ +||+++.+|..+- +|
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 444578999999999999999996 4689999984 455555543 5799999999872 43
Q ss_pred -C-CCEEEe
Q 039903 226 -K-GDAILI 232 (233)
Q Consensus 226 -~-~D~~~l 232 (233)
. .|+|++
T Consensus 159 ~~~fD~V~~ 167 (258)
T 2r6z_A 159 QGKPDIVYL 167 (258)
T ss_dssp HCCCSEEEE
T ss_pred CCCccEEEE
Confidence 3 398876
No 232
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.54 E-value=6e-05 Score=62.21 Aligned_cols=67 Identities=15% Similarity=0.023 Sum_probs=52.6
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCC-CcEEEeech-HHHhhccCC------CCceEEecCcCC-CC-----CCC-CEE
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLH-IKGVNFDLS-HVIQDSSSY------SGVKHIGGIMLE-RI-----PKG-DAI 230 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~v~~~a~~~------~ri~~~~gD~f~-~~-----P~~-D~~ 230 (233)
.....+|+|+|||+|..+..+++..++ .+++.+|+. ..++.++++ ++|+++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 455679999999999999999999887 889999985 456665542 589999999987 32 333 888
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
++
T Consensus 161 l~ 162 (274)
T 3ajd_A 161 LL 162 (274)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 233
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.51 E-value=9.7e-05 Score=51.02 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=52.3
Q ss_pred HHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhh
Q 039903 12 AMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAK 86 (233)
Q Consensus 12 ~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~ 86 (233)
++..-.++.|++.| . ++.|..|||+.+++ +...+.+.|+.|...|++.+. . +.|++|+.+.
T Consensus 27 ~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~----~-g~y~l~~~g~ 87 (96)
T 1y0u_A 27 AVTNPVRRKILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV----G-ERWVVTDAGK 87 (96)
T ss_dssp HHSCHHHHHHHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----T-TEEEECTTTC
T ss_pred HhCCHHHHHHHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE----C-CEEEECCCch
Confidence 44444577899999 5 58999999999999 999999999999999999987 5 6899998654
No 234
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=97.51 E-value=9.2e-05 Score=64.40 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=48.1
Q ss_pred CcceEEEecCC------ccHHHHHHHHH-cCCCcEEEeechHHHhhccCCCCceEEecCcCC-CCC------C-C-CEEE
Q 039903 168 QIKQLVDVGGG------LGVNVNIIISN-YLHIKGVNFDLSHVIQDSSSYSGVKHIGGIMLE-RIP------K-G-DAIL 231 (233)
Q Consensus 168 ~~~~vvDvGGG------~G~~~~~l~~~-~P~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~f~-~~P------~-~-D~~~ 231 (233)
+..+||||||| +|..+..++++ +|+.+++.+|+.+... ...++|+++.+|+.+ +++ . . |+|+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVi 293 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--VDELRIRTIQGDQNDAEFLDRIARRYGPFDIVI 293 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--hcCCCcEEEEecccccchhhhhhcccCCccEEE
Confidence 35799999999 67777777766 5999999999965432 234799999999988 555 2 2 8886
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
.
T Consensus 294 s 294 (419)
T 3sso_A 294 D 294 (419)
T ss_dssp E
T ss_pred E
Confidence 3
No 235
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=97.50 E-value=0.00011 Score=63.61 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=50.4
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-----CCceEEecCcCCC-CC-CC-CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLER-IP-KG-DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~-~P-~~-D~~~l 232 (233)
...+|+|+|||+|.++..++++ ..+++.+|. +..++.++++ .+++++.+|+++. .+ .. |+|+.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 304 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVT 304 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEE
Confidence 4479999999999999999998 568999998 5577777653 3599999999984 44 23 99875
No 236
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=97.43 E-value=0.00014 Score=61.09 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=46.7
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-----hHHHhhcc--CC--CCceEEec-CcCC-CCCCCCEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-----SHVIQDSS--SY--SGVKHIGG-IMLE-RIPKGDAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~v~~~a~--~~--~ri~~~~g-D~f~-~~P~~D~~~l 232 (233)
++...+|||||||+|.++..++++ -+++.+|+ +..++... .. ++|+++.+ |+++ +....|+|+.
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~s 154 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLC 154 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEE
Confidence 455689999999999999999987 37888998 43333222 12 57999999 9987 3223498874
No 237
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=97.40 E-value=0.00044 Score=55.81 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=47.0
Q ss_pred ccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeec-hHHHhhcc----CCCCceEEecCcCC
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDL-SHVIQDSS----SYSGVKHIGGIMLE 222 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~a~----~~~ri~~~~gD~f~ 222 (233)
.+...+|+|+|||+|.++..+++.- |+=+++.+|. |+.++.++ +..+|..+.+|...
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~ 137 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARF 137 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccC
Confidence 6778999999999999999999984 8989999998 45665543 34689999888876
No 238
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=97.39 E-value=0.0001 Score=63.27 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=51.6
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC--------------CCceEEecCcCCCC------C
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY--------------SGVKHIGGIMLERI------P 225 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~--------------~ri~~~~gD~f~~~------P 225 (233)
.+.++|||||||.|..++++++..| .+++++|+ |.+++.++++ +|++++.+|.++-+ +
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 3568999999999999999998765 78999998 5688877642 27999999999732 2
Q ss_pred CC-CEEEe
Q 039903 226 KG-DAILI 232 (233)
Q Consensus 226 ~~-D~~~l 232 (233)
.. |+|++
T Consensus 266 ~~fDvII~ 273 (364)
T 2qfm_A 266 REFDYVIN 273 (364)
T ss_dssp CCEEEEEE
T ss_pred CCceEEEE
Confidence 23 88875
No 239
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=97.38 E-value=0.00071 Score=54.58 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=51.3
Q ss_pred ccCcceEEEecCCccHHHHHHHHH-cCCCcEEEeechH-H----HhhccCCCCceEEecCcCCCC-----CC-CCEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISN-YLHIKGVNFDLSH-V----IQDSSSYSGVKHIGGIMLERI-----PK-GDAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dlp~-v----~~~a~~~~ri~~~~gD~f~~~-----P~-~D~~~l 232 (233)
++...+|+|+|||+|.++..+++. .|+-+++.+|+.+ . ++.+++..+|.++.+|..++. +. .|+++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV 152 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence 566789999999999999999987 4688899999854 3 344544578999999987631 22 388864
No 240
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=97.34 E-value=0.00035 Score=64.24 Aligned_cols=95 Identities=21% Similarity=0.185 Sum_probs=63.3
Q ss_pred cccccccCchHHHHHHHHHHhcchhcHHHHHHhccc---ccCcceEEEecCCccHHHHHHHHH----cCCCcEEEeechH
Q 039903 130 FYEYAGNDFRFNGVFNKAMLNHTSIVTNRIIDSSKG---FEQIKQLVDVGGGLGVNVNIIISN----YLHIKGVNFDLSH 202 (233)
Q Consensus 130 ~~~~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~---~~~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dlp~ 202 (233)
.||.+++||-.-..|.+|+.. .+....+. -.+...|+|||+|+|-++...+++ .-++++..++-.+
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 366777888777777777653 22222110 234578999999999874333332 2334677788766
Q ss_pred HHhhccCC-------CCceEEecCcCC-CCCCC-CEEE
Q 039903 203 VIQDSSSY-------SGVKHIGGIMLE-RIPKG-DAIL 231 (233)
Q Consensus 203 v~~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~ 231 (233)
.+..+++. ++|+++.||+.+ .+|+. |+++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIV 433 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIV 433 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEE
Confidence 55555441 799999999999 89984 9885
No 241
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.34 E-value=9.1e-05 Score=63.03 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=49.8
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------C-CceEEecCcCCCC------CC-CCEEE
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------S-GVKHIGGIMLERI------PK-GDAIL 231 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~-ri~~~~gD~f~~~------P~-~D~~~ 231 (233)
+..+|||+|||+|.++..+++... +++.+|+ +..++.++++ + +++++.+|+++.. .. .|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 446899999999999999999754 8999998 5577777653 2 5999999999732 22 39987
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
+
T Consensus 231 ~ 231 (332)
T 2igt_A 231 T 231 (332)
T ss_dssp E
T ss_pred E
Confidence 6
No 242
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=97.34 E-value=0.00017 Score=61.43 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=52.5
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCC-----CcEEEeec-hHHHhhccCC-----CCceEEecCcCCCCCC-C-CEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLH-----IKGVNFDL-SHVIQDSSSY-----SGVKHIGGIMLERIPK-G-DAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~-----l~~~v~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~P~-~-D~~~l 232 (233)
....+|+|+|||+|.++..+++..|. .+++.+|+ |..++.|+.+ .+++++.+|.+++.+. . |+|+.
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 207 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEE
Confidence 34579999999999999999998875 68899998 5577766653 3689999999986553 3 88763
No 243
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.33 E-value=0.00019 Score=61.09 Aligned_cols=63 Identities=19% Similarity=0.113 Sum_probs=50.6
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCCCCCCEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERIPKGDAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~P~~D~~~l 232 (233)
.+..+|+|+|||+|.++.. ++ ...+++.+|+ |..++.++++ ++++++.+|.++.....|++++
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~ 264 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIM 264 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEE
Confidence 4567999999999999999 77 5778999998 6677777653 5899999999985423488876
No 244
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=97.32 E-value=0.00036 Score=61.29 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=50.5
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCCCC-CCEEEe
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERIPK-GDAILI 232 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~P~-~D~~~l 232 (233)
.+..+|+|+|||+|.++..+++. ..+++.+|. |+.++.|+++ + ++++.+|+++..+. .|++++
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~ 359 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIV 359 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEE
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEE
Confidence 44578999999999999999987 457999998 4677777653 4 99999999985554 488875
No 245
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=97.31 E-value=0.00046 Score=57.06 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=45.9
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec--hHHHhhccCC----------------CCceEEecCcCC---CC-
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL--SHVIQDSSSY----------------SGVKHIGGIMLE---RI- 224 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl--p~v~~~a~~~----------------~ri~~~~gD~f~---~~- 224 (233)
....+|+|||||+|.++..+++. ...+++.+|+ |.+++.++++ ++|+++..|+-+ .+
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 44579999999999999988886 3458999999 4676655431 378888666543 22
Q ss_pred ---C-C-CCEEEe
Q 039903 225 ---P-K-GDAILI 232 (233)
Q Consensus 225 ---P-~-~D~~~l 232 (233)
+ . .|+|++
T Consensus 157 ~~~~~~~fD~Ii~ 169 (281)
T 3bzb_A 157 RCTGLQRFQVVLL 169 (281)
T ss_dssp HHHSCSSBSEEEE
T ss_pred hhccCCCCCEEEE
Confidence 2 2 388874
No 246
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=97.31 E-value=0.00037 Score=57.64 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=44.4
Q ss_pred cCcceEEEecCCc--cHHHHHH-HHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC
Q 039903 167 EQIKQLVDVGGGL--GVNVNII-ISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE 222 (233)
Q Consensus 167 ~~~~~vvDvGGG~--G~~~~~l-~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~ 222 (233)
.++.++||||||. +.+..++ .+.+|+.+++.+|. |.+++.|++. .+++++.+|+.+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~ 142 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD 142 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence 4678999999997 3344444 45689999999998 7799888752 379999999987
No 247
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=97.29 E-value=8e-05 Score=60.37 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=33.8
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccC
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSS 209 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~ 209 (233)
.+..+|||||||+|.++..+++..+ .+++.+|+. ..++.+++
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~ 97 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQK 97 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHH
Confidence 4457999999999999999988876 679999984 56666643
No 248
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=97.28 E-value=0.00038 Score=61.59 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=54.8
Q ss_pred HhcccccCcceEEEecCCccHHHHHHHHHcCC-CcEEEeech-HHHhhccCC------CCceEEecCcCC-C--CC-CC-
Q 039903 161 DSSKGFEQIKQLVDVGGGLGVNVNIIISNYLH-IKGVNFDLS-HVIQDSSSY------SGVKHIGGIMLE-R--IP-KG- 227 (233)
Q Consensus 161 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~v~~~a~~~------~ri~~~~gD~f~-~--~P-~~- 227 (233)
..++ .....+|+|+|||.|..+..+++..++ .+++.+|+. ..++.++++ ++|+++.+|+.+ + ++ ..
T Consensus 253 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 253 IVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp HHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCE
T ss_pred HhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCC
Confidence 3344 556679999999999999999999887 889999985 456555432 579999999987 3 55 33
Q ss_pred CEEEe
Q 039903 228 DAILI 232 (233)
Q Consensus 228 D~~~l 232 (233)
|+|++
T Consensus 332 D~Vl~ 336 (450)
T 2yxl_A 332 DKVLL 336 (450)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98875
No 249
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=97.28 E-value=0.00018 Score=59.50 Aligned_cols=61 Identities=8% Similarity=0.181 Sum_probs=50.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHh
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYF 88 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l 88 (233)
=+.|++.|...+ ++.|+.|||+.+|+ +...+.|+|+.|+..|+++++ ++++|++++....|
T Consensus 32 al~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~----~~~~Y~LG~~~~~l 92 (275)
T 3mq0_A 32 AVRILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS----ADGTLRIGPHSLRW 92 (275)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC----TTSEEEECTHHHHH
T ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----CCCcEEehHHHHHH
Confidence 356899998865 58999999999999 999999999999999999997 56789999864433
No 250
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=97.27 E-value=0.00017 Score=65.80 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=48.3
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC------CCceEEecCcCC---CCCC-C-CEEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY------SGVKHIGGIMLE---RIPK-G-DAIL 231 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~------~ri~~~~gD~f~---~~P~-~-D~~~ 231 (233)
.+..+|||||||.|.++..+++. ..+++++|+. ..|+.|+.+ -.|+|..+|.-+ +.+. . |+|+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~ 139 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAI 139 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEE
Confidence 34568999999999999999997 6679999985 577766542 258999998764 3443 2 9886
No 251
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.25 E-value=0.00051 Score=56.81 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC--CCceEEecCcCC
Q 039903 156 TNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY--SGVKHIGGIMLE 222 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~--~ri~~~~gD~f~ 222 (233)
...+++.+. .+....+||++||.|.++.+|+++ +.+++.+|. |.+++.+++. +|++++.+||-+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 466777776 677789999999999999999998 778999998 4577665432 699999999975
No 252
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.24 E-value=0.00038 Score=46.38 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=52.1
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChh-hHHHHHHHHhcCCceeeeccCCCCCceeccHhhhH
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAV-MLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKY 87 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~-~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~ 87 (233)
.+-.|.+.|... ||.|+.+||+.+++ +.. .+++.|..|...|++++...+ .. .|.+|+.+..
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~g-RP-~w~LT~~g~~ 74 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTT-PP-IWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSS-SC-EEEECHHHHT
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCC-CC-CeEeCHhHHh
Confidence 456788999998 59999999999999 998 999999999999999865221 23 8999988764
No 253
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.22 E-value=0.00057 Score=45.80 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=51.9
Q ss_pred HHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhh
Q 039903 14 QAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFV 89 (233)
Q Consensus 14 ~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~ 89 (233)
..-.+..|.+.|.+.++..++|+.|||+++|+ +...+++.|.-|...|+++.... ..+.|...+....+.
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g~--~~~~W~i~~~~~~~~ 77 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEAG--TPPLWKIAVSTQAWN 77 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEESS--SSCEEEEC-------
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCC--CCCeeEEeCcHHhcc
Confidence 33456778899998754447999999999999 99999999999999999987532 357888887665443
No 254
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.15 E-value=0.00016 Score=62.69 Aligned_cols=65 Identities=11% Similarity=-0.052 Sum_probs=50.3
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------C--CceEEecCcCCCCC------C-CCEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------S--GVKHIGGIMLERIP------K-GDAI 230 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~--ri~~~~gD~f~~~P------~-~D~~ 230 (233)
.+..+|+|+|||+|.++..++++. .-+++.+|+ |..++.|+++ + +++++.+|.++.+| . .|+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 455799999999999999999863 337999998 5577777653 3 89999999987332 1 3888
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
++
T Consensus 290 i~ 291 (385)
T 2b78_A 290 II 291 (385)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 255
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.09 E-value=0.00056 Score=56.06 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=52.6
Q ss_pred HHHHHhcccccCc--ceEEEecCCccHHHHHHHHHcCCCcEEEeechHH--------HhhccC-------C-CCceEEec
Q 039903 157 NRIIDSSKGFEQI--KQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHV--------IQDSSS-------Y-SGVKHIGG 218 (233)
Q Consensus 157 ~~~~~~~~~~~~~--~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v--------~~~a~~-------~-~ri~~~~g 218 (233)
..+.+.+. .++. .+|+|+|||.|..+..++++ ..+++.+|..+. ++.++. . +||+++.+
T Consensus 76 e~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~ 152 (258)
T 2oyr_A 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (258)
T ss_dssp SHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred HHHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence 34555554 5555 79999999999999999998 457999998653 333321 1 47999999
Q ss_pred CcCCC---CCCC-CEEEe
Q 039903 219 IMLER---IPKG-DAILI 232 (233)
Q Consensus 219 D~f~~---~P~~-D~~~l 232 (233)
|.++- ++.. |+|++
T Consensus 153 D~~~~L~~~~~~fDvV~l 170 (258)
T 2oyr_A 153 SSLTALTDITPRPQVVYL 170 (258)
T ss_dssp CHHHHSTTCSSCCSEEEE
T ss_pred CHHHHHHhCcccCCEEEE
Confidence 98862 3433 99886
No 256
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.07 E-value=0.00068 Score=46.59 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=57.8
Q ss_pred HHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeecc--CCCCCceeccHhhhHh
Q 039903 11 AAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSA--GDDQRLYGLAHVAKYF 88 (233)
Q Consensus 11 ~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~lt~~s~~l 88 (233)
.++..-.++.|+..|... ++.|..|||+.+++ ++..+.+.|+.|...|++++... ++....|.+|+.+...
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~ 83 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEE 83 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHH
Confidence 466777889999999765 58999999999999 99999999999999999996431 1123468899988644
Q ss_pred h
Q 039903 89 V 89 (233)
Q Consensus 89 ~ 89 (233)
.
T Consensus 84 ~ 84 (100)
T 1ub9_A 84 A 84 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 257
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.07 E-value=0.00085 Score=62.65 Aligned_cols=75 Identities=16% Similarity=0.023 Sum_probs=56.4
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHH------------------------------------------cCCCc
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISN------------------------------------------YLHIK 194 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~------------------------------------------~P~l~ 194 (233)
..++.... |.....++|.+||+|.++++.+.. .|+.+
T Consensus 180 a~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~ 258 (703)
T 3v97_A 180 AAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH 258 (703)
T ss_dssp HHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence 34555444 777789999999999999887764 34578
Q ss_pred EEEeec-hHHHhhccCC-------CCceEEecCcCC-CCC----CCCEEEe
Q 039903 195 GVNFDL-SHVIQDSSSY-------SGVKHIGGIMLE-RIP----KGDAILI 232 (233)
Q Consensus 195 ~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~P----~~D~~~l 232 (233)
++..|+ |.+++.|+.+ ++|++..+|+++ ..| ..|+++.
T Consensus 259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~ 309 (703)
T 3v97_A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLS 309 (703)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEe
Confidence 999998 5688877764 469999999997 334 2388764
No 258
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=97.07 E-value=0.00059 Score=48.24 Aligned_cols=66 Identities=14% Similarity=0.231 Sum_probs=51.6
Q ss_pred HHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhH
Q 039903 13 MQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKY 87 (233)
Q Consensus 13 L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~ 87 (233)
+..-.++.|+..|.. ++.|..|||+.+++ ++..+.+.|+.|...|+++....+ ....|.+|+.+..
T Consensus 18 l~~~~r~~IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~g-r~~~y~l~~~~~~ 83 (114)
T 2oqg_A 18 LSDETRWEILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVG-REIRYRALGAELN 83 (114)
T ss_dssp TTCHHHHHHHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECSHHHH
T ss_pred hCChHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecC-CEEEEEechHHHH
Confidence 333457789999944 58999999999999 999999999999999999875311 2234888876653
No 259
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.06 E-value=0.00069 Score=47.09 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=52.2
Q ss_pred HHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHh
Q 039903 11 AAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHV 84 (233)
Q Consensus 11 ~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~ 84 (233)
.+|..-.++.|+..|.. ++.|+.|||+.+++ ++..+.+.|+.|...|+++....+ ....|++|+.
T Consensus 18 ~~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g-~~~~y~l~~~ 82 (102)
T 3pqk_A 18 KTLSHPVRLMLVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNI-KQIFYRLTEA 82 (102)
T ss_dssp HHHCSHHHHHHHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSS-SCCEEEECSS
T ss_pred HHcCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEECcH
Confidence 34555567889999976 68999999999999 999999999999999999876322 3456777763
No 260
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.05 E-value=0.00033 Score=61.20 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=49.9
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC--------CCceEEecCcCCCCC-----CCCEEE
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY--------SGVKHIGGIMLERIP-----KGDAIL 231 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~--------~ri~~~~gD~f~~~P-----~~D~~~ 231 (233)
++...+|+|+|||+|..+..+++. ..+++.+|+. ..++.|+.+ ++|+++.+|+++.++ ..|+|+
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred cCCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 333589999999999999999887 4589999984 566666542 479999999997422 239988
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
+
T Consensus 169 l 169 (410)
T 3ll7_A 169 V 169 (410)
T ss_dssp E
T ss_pred E
Confidence 6
No 261
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.03 E-value=0.00064 Score=45.09 Aligned_cols=63 Identities=14% Similarity=0.277 Sum_probs=50.8
Q ss_pred HHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 15 AASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 15 ~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
.-.+..|++.|...+++.++|+.|||+++++ +...+.+.|.-|...|++..... ..+.|..++
T Consensus 13 ~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g~--~~~~W~i~~ 75 (77)
T 1qgp_A 13 QDQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEAG--TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEECS--SSCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCC--CCCceEecC
Confidence 3446778899999843348999999999999 99999999999999999988632 346776654
No 262
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=97.02 E-value=0.00092 Score=58.69 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=52.6
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC-----CCceEEecCcCC-C--CCC-C-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY-----SGVKHIGGIMLE-R--IPK-G-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~-----~ri~~~~gD~f~-~--~P~-~-D~~~l 232 (233)
.....+|+|+|||.|..+..+++..|+.+++.+|.. ..++.++++ -+++++.+|+.+ + ++. . |+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~ 321 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL 321 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEE
Confidence 455679999999999999999999999899999984 456555442 358999999987 2 443 3 98875
No 263
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=97.02 E-value=0.00026 Score=61.53 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=50.7
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------CCceEEecCcCCCC------CCC-CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------SGVKHIGGIMLERI------PKG-DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~------P~~-D~~~l 232 (233)
+..+|+|+|||+|.++..+++. +..+++.+|+ |..++.++++ ++++++.+|+++.. +.. |++++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999986 4558999998 5677777653 28999999998732 223 88876
No 264
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=97.01 E-value=0.00098 Score=54.17 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=51.1
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHh
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYF 88 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l 88 (233)
-+.|++.|...+ ++.|+.|||+.+++ +...+.|+|+.|...|++++. ..+.|++++....|
T Consensus 10 ~l~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~----~~~~Y~lg~~~~~l 70 (249)
T 1mkm_A 10 AFEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK----KDKRYVPGYKLIEY 70 (249)
T ss_dssp HHHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC----TTSCEEECTHHHHH
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC----CCCcEEECHHHHHH
Confidence 356788887753 47999999999999 999999999999999999986 46889998854433
No 265
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=96.99 E-value=0.00026 Score=61.27 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=50.5
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCCCC------CCC-CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLERI------PKG-DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~------P~~-D~~~l 232 (233)
+..+|+|+|||+|.++..+++. ..+++.+|+ |..++.++++ ++++++.+|+++.. +.. |++++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 5679999999999999999998 567899998 5677777653 45999999998732 223 88876
No 266
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.96 E-value=0.00065 Score=55.00 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=51.2
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhh
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFV 89 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~ 89 (233)
+.|++.|...+ ++.|+.|||+.+|+ +...+.|+|+.|...|+++++. +.++|++++....|.
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~---~~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG---PAGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG---GGCEEEECSHHHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---CCCeEEECHHHHHHH
Confidence 45778887653 47999999999999 9999999999999999999862 247899988655543
No 267
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=96.94 E-value=0.00076 Score=56.47 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=38.5
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC-----C-------CceEEecCc
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY-----S-------GVKHIGGIM 220 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~-----~-------ri~~~~gD~ 220 (233)
...+|||||||+|..+..+++. ...+++.+|+. ..++.|++. . +++++..|+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~ 112 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI 112 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCT
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhc
Confidence 3578999999999877776664 34579999985 578877653 1 256777777
No 268
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.92 E-value=0.0014 Score=45.22 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=45.0
Q ss_pred CCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 34 ISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 34 ~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
.+..+||..+++ +++.+++.++.|...|++++. .+.|.+|+.|..+...
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~-----~~~~~LT~kG~~~l~~ 69 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE-----GKQYMLTKKGEELLED 69 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE-----CCeeEEChhHHHHHHH
Confidence 899999999999 999999999999999999996 5569999999987644
No 269
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.92 E-value=0.00054 Score=47.25 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=51.9
Q ss_pred HHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhh
Q 039903 12 AMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVA 85 (233)
Q Consensus 12 ~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s 85 (233)
+|..-.++.|+..|.+ ++.|+.|||+.+++ +...+.+.|+.|...|++++...+ ....|++++..
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g-~~~~y~l~~~~ 83 (98)
T 3jth_A 19 AMANERRLQILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEA-QTVYYTLKSEE 83 (98)
T ss_dssp HHCSHHHHHHHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCT-TCCEEEECCHH
T ss_pred HcCCHHHHHHHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEECHHH
Confidence 4444567788888887 59999999999999 999999999999999999976322 23457777643
No 270
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.91 E-value=0.00086 Score=48.38 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=52.7
Q ss_pred HHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhh
Q 039903 10 PAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVA 85 (233)
Q Consensus 10 s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s 85 (233)
..+|..-.++.|+..|... ++.|+.|||+.+++ ++..+.+.|+.|...|++.....+ ....|++++.+
T Consensus 36 ~~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~g-r~~~y~l~~~~ 103 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEG-KLALYSLGDEH 103 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----CCEEEESCHH
T ss_pred HHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEEC-CEEEEEECHHH
Confidence 3445555688899999865 58999999999999 999999999999999999875321 23368877654
No 271
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.90 E-value=0.00091 Score=47.91 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=55.8
Q ss_pred HHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhh
Q 039903 10 PAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAK 86 (233)
Q Consensus 10 s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~ 86 (233)
..+|.--.++.|+..|.. ++.++.|||+.+++ +...+.+.|+.|...|++.....+ ....|++++.+.
T Consensus 12 ~~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~g-r~~~y~l~~~~~ 79 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQG-RVRTCAIEKEPF 79 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECSHHH
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecC-CEEEEEECHHHH
Confidence 455666678999999986 69999999999999 999999999999999999876321 335688887554
No 272
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=96.89 E-value=0.001 Score=58.69 Aligned_cols=73 Identities=16% Similarity=0.034 Sum_probs=52.6
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHc-------------CCCcEEEeec-hHHHhhccCC------C--CceEE
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNY-------------LHIKGVNFDL-SHVIQDSSSY------S--GVKHI 216 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-------------P~l~~~v~Dl-p~v~~~a~~~------~--ri~~~ 216 (233)
+++... .....+|+|.|||+|.++..+++.. +..++.++|+ |.+++.|+.+ . +++++
T Consensus 163 mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~ 241 (445)
T 2okc_A 163 MVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIV 241 (445)
T ss_dssp HHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEE
T ss_pred HHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEe
Confidence 344433 3445689999999999999988764 5678999998 5577766542 2 78899
Q ss_pred ecCcCCC-CCCC-CEEEe
Q 039903 217 GGIMLER-IPKG-DAILI 232 (233)
Q Consensus 217 ~gD~f~~-~P~~-D~~~l 232 (233)
.+|++.. .+.. |+|+.
T Consensus 242 ~gD~l~~~~~~~fD~Iv~ 259 (445)
T 2okc_A 242 CEDSLEKEPSTLVDVILA 259 (445)
T ss_dssp ECCTTTSCCSSCEEEEEE
T ss_pred eCCCCCCcccCCcCEEEE
Confidence 9999983 3333 88764
No 273
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=96.88 E-value=0.00062 Score=58.60 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=42.1
Q ss_pred ceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC------CCceEEecCcCC
Q 039903 170 KQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY------SGVKHIGGIMLE 222 (233)
Q Consensus 170 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~------~ri~~~~gD~f~ 222 (233)
.+|+|+|||+|.++..+++.. -+++.+|. |+.++.|+++ ++++++.+|.++
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~ 272 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 272 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred CEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 679999999999999998854 47899998 5577777653 589999999876
No 274
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.87 E-value=0.00076 Score=46.28 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=52.6
Q ss_pred HHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhh
Q 039903 12 AMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVA 85 (233)
Q Consensus 12 ~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s 85 (233)
++..-.++.|+..|... ++.|..|||+.+++ +...+.+.|+.|...|++.+...+ ....|++|+.+
T Consensus 20 ~l~~~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~-r~~~y~l~~~~ 85 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDA-QRILYSIKNEA 85 (99)
T ss_dssp HHCSHHHHHHHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECS-SCEEEEECCHH
T ss_pred HhCChHHHHHHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecC-CEEEEEEChHH
Confidence 44445677888888774 48999999999999 999999999999999999986421 23457787755
No 275
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=96.86 E-value=0.0015 Score=56.03 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=50.7
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCCCCceEEecCcCCCCCC-C--CEEE
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSYSGVKHIGGIMLERIPK-G--DAIL 231 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~f~~~P~-~--D~~~ 231 (233)
+....++||+|++.|.++..++++ ..+++.+|.-+.-......++|+++.+|.|+..|. + |+++
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vv 275 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMV 275 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEE
Confidence 356689999999999999999988 67899999755444445568999999999994443 3 7664
No 276
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.85 E-value=0.0019 Score=47.42 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=46.1
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhc
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVL 90 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~ 90 (233)
++.|..+||+.+++ ++..+.++++.|...|++.+. ....|.+|+.+..+..
T Consensus 21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~----~~~~~~LT~~g~~~~~ 71 (142)
T 1on2_A 21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE----KYRGLVLTSKGKKIGK 71 (142)
T ss_dssp SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE----TTTEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe----eCceEEEchhHHHHHH
Confidence 58999999999999 999999999999999999987 4678999999887654
No 277
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=96.83 E-value=0.0015 Score=60.37 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=59.4
Q ss_pred cccccccCchHHHHHHHHHHhcchhcHHHHHHhcccccCcceEEEecCCccHHHHHHHH----Hc---------CCCcEE
Q 039903 130 FYEYAGNDFRFNGVFNKAMLNHTSIVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIIS----NY---------LHIKGV 196 (233)
Q Consensus 130 ~~~~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~----~~---------P~l~~~ 196 (233)
.||.+.+|+-+-+.|.+|+... +....++-.+.+.|+|||||+|-++...++ +. ...++.
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 3666667777777777766542 111111012457899999999999643222 22 345788
Q ss_pred EeechH-HHhhccC------CCCceEEecCcCC-CC------CC-CCEEE
Q 039903 197 NFDLSH-VIQDSSS------YSGVKHIGGIMLE-RI------PK-GDAIL 231 (233)
Q Consensus 197 v~Dlp~-v~~~a~~------~~ri~~~~gD~f~-~~------P~-~D~~~ 231 (233)
.+|-.. ++...+. .++|+++.||+-+ ++ |+ .|+++
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIV 500 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIV 500 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEE
Confidence 888754 2222111 1789999999998 67 55 59885
No 278
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.81 E-value=0.0017 Score=46.08 Aligned_cols=69 Identities=10% Similarity=0.169 Sum_probs=55.2
Q ss_pred HHHHHHhhChhHHHHhcCCCCCCC--HHHHHHhC-CCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHh
Q 039903 12 AMQAASELGVFEIIAKAGPTAKIS--AVEIAAQM-PSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYF 88 (233)
Q Consensus 12 ~L~~a~~lglfd~L~~~~~~~~~t--~~elA~~~-~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l 88 (233)
+|.--.++.|+..|.. |+.+ ..||++.+ ++ ++..+.+.|+.|...|++++... ....|++|+.|+.+
T Consensus 23 ~l~~~wrl~IL~~L~~----g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~--r~~~y~LT~~G~~l 92 (111)
T 3df8_A 23 LLGKKYTMLIISVLGN----GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG--QITTYALTEKGMNV 92 (111)
T ss_dssp HHHSTTHHHHHHHHTS----SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES--SSEEEEECHHHHHH
T ss_pred HHcCccHHHHHHHHhc----CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec--CcEEEEECccHHHH
Confidence 3333345667777774 5777 99999999 99 99999999999999999998632 25689999999877
Q ss_pred hc
Q 039903 89 VL 90 (233)
Q Consensus 89 ~~ 90 (233)
..
T Consensus 93 ~~ 94 (111)
T 3df8_A 93 RN 94 (111)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 279
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=96.79 E-value=0.0011 Score=57.68 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=41.3
Q ss_pred HHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC
Q 039903 156 TNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY 210 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~ 210 (233)
...+++.+. .....+|||||||+|.++..++++. .+++.+|.. ..++.+++.
T Consensus 96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~ 148 (416)
T 4e2x_A 96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK 148 (416)
T ss_dssp HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc
Confidence 345666665 6667899999999999999999874 489999985 577777764
No 280
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=96.79 E-value=0.00049 Score=59.75 Aligned_cols=65 Identities=9% Similarity=0.023 Sum_probs=50.5
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC-------C-CceEEecCcCCCCC------C-CCEE
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY-------S-GVKHIGGIMLERIP------K-GDAI 230 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~-------~-ri~~~~gD~f~~~P------~-~D~~ 230 (233)
.+..+|+|+|||+|.++..+++.. ..+++.+|+ |..++.++++ + +++++.+|+++..+ . .|++
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 455799999999999999999874 457999998 5577776542 2 78999999987322 2 3888
Q ss_pred Ee
Q 039903 231 LI 232 (233)
Q Consensus 231 ~l 232 (233)
++
T Consensus 298 i~ 299 (396)
T 3c0k_A 298 VM 299 (396)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 281
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.78 E-value=0.0018 Score=47.00 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=42.3
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 21 VFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 21 lfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
+...|.....+++.|..|||+.+++ ++..++++|+.|...|+++.... .++.|.++.
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~g--~~ggy~L~~ 70 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIRG--AYGGYVLGS 70 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC------CCEEESS
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecCC--CCCceEeCC
Confidence 3444554321258999999999999 99999999999999999987531 246787764
No 282
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.77 E-value=0.00034 Score=57.34 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=49.4
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHh
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYF 88 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l 88 (233)
+.|++.|...+ ++.|+.|||+++|+ +...+.|+|+.|+..|+++++. +.++|++++.-..|
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~---~~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE---GARSYRLGPQVLRL 69 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS---SSSEEEECTTHHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---CCCcEEcCHHHHHH
Confidence 34666666533 58999999999999 9999999999999999999972 23899998765443
No 283
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.77 E-value=0.0018 Score=44.65 Aligned_cols=66 Identities=14% Similarity=0.250 Sum_probs=52.9
Q ss_pred hhChhHHHHhcCCCCCCCHHHH----HHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEI----AAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~el----A~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..|| |+.+++ +...+.++++.|...|++++.... ....|.+|+.|..+...
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~-r~~~~~LT~~G~~~~~~ 79 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQER-GEKRLYLTEKGKLFAIS 79 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecC-CceEEEECHHHHHHHHH
Confidence 44566677665 58999999 999999 999999999999999999985432 24568899999877643
No 284
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=96.72 E-value=0.0017 Score=53.69 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=30.3
Q ss_pred CcceEEEecCCccHHHH----HHHHHcCCCcE--EEeech-HHHhhcc
Q 039903 168 QIKQLVDVGGGLGVNVN----IIISNYLHIKG--VNFDLS-HVIQDSS 208 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~----~l~~~~P~l~~--~v~Dlp-~v~~~a~ 208 (233)
...+|||||||+|.++. .++.++|+.++ +++|.. +.++.++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~ 99 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK 99 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHH
Confidence 34689999999997554 45667798865 999974 4666554
No 285
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.72 E-value=0.00096 Score=59.23 Aligned_cols=66 Identities=5% Similarity=-0.043 Sum_probs=51.6
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCC-CcEEEeech-HHHhhccCC------CCceEEecCcCC-C--CCCC-CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLH-IKGVNFDLS-HVIQDSSSY------SGVKHIGGIMLE-R--IPKG-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~v~~~a~~~------~ri~~~~gD~f~-~--~P~~-D~~~l 232 (233)
.....+|+|+|||.|..+..+++..++ .+++.+|+. ..++.++++ . |+++.+|..+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~ 176 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL 176 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence 456689999999999999999999875 789999984 466666543 4 9999999876 2 3443 88874
No 286
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=96.71 E-value=0.0029 Score=53.16 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=51.2
Q ss_pred ccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeech-HHHhhccCC------CCceEEecCcCCCC---C---CCCEEE
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDLS-HVIQDSSSY------SGVKHIGGIMLERI---P---KGDAIL 231 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~v~~~a~~~------~ri~~~~gD~f~~~---P---~~D~~~ 231 (233)
.....+|+|+|+|.|..+..+++.. +.-+++.+|+. ..++.++++ ++|+++.+|+.+.. + ..|.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4556799999999999999999985 56889999984 456655542 57999999998721 1 138887
Q ss_pred e
Q 039903 232 I 232 (233)
Q Consensus 232 l 232 (233)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 5
No 287
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.71 E-value=0.002 Score=52.25 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=55.2
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
.++.|+..|... ++.|..|||+.+++ +...+.|+|+.|...|++++.. ....|.+|+.+..+...
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~---r~~~~~LT~~G~~l~~~ 217 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG---KDRKVELNELGLNVIKL 217 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET---TTTEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---CccEEEECHHHHHHHHH
Confidence 455677887766 58999999999999 9999999999999999999863 45789999999887543
No 288
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.70 E-value=0.0011 Score=61.93 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=49.4
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC--------CCceEEecCcCCCCC---CC-CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY--------SGVKHIGGIMLERIP---KG-DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~--------~ri~~~~gD~f~~~P---~~-D~~~l 232 (233)
+..+|||+|||+|.++..+++... -+++.+|+. ..++.++++ ++++++.+|.++.++ .. |+|++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~ 615 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI 615 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence 347899999999999999998533 469999985 577777653 389999999998322 22 88876
No 289
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.70 E-value=0.004 Score=52.75 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=54.8
Q ss_pred HHHHHHhcccccCcceEEEecCCccHHHHHHHHHc-CCCcEEEeech-HHHhhccCC--CCceEEecCcCC
Q 039903 156 TNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNY-LHIKGVNFDLS-HVIQDSSSY--SGVKHIGGIMLE 222 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~v~~~a~~~--~ri~~~~gD~f~ 222 (233)
..++++.+. ......+||+.+|.|..+.+|+++. |+.+++.+|.. .+++.++.. +|++++.++|-+
T Consensus 46 l~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 46 LDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp THHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 467777776 5667899999999999999999984 88999999984 577777532 799999999875
No 290
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.70 E-value=0.0015 Score=49.10 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhH
Q 039903 9 LPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKY 87 (233)
Q Consensus 9 ~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~ 87 (233)
...+|.--.++.|+..|.. ++.|+.|||+.+++ +...+.+.|+.|...|+++....+ ....|++|+.+..
T Consensus 51 ~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~G-r~~~y~lt~~~~~ 120 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDG-RFRYYRLDPQGLA 120 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecC-CEEEEEEChHHHH
Confidence 3566777778999999985 69999999999999 999999999999999999976321 2346888887654
No 291
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=96.69 E-value=0.00061 Score=56.25 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=29.5
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccC
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSS 209 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~ 209 (233)
...+|||||||+|.++ .++.+.+..+++.+|+. ..++.+++
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~ 112 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGR 112 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHH
Confidence 4579999999999944 44444456689999984 56665543
No 292
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=96.68 E-value=0.00032 Score=57.32 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=29.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhcc
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSS 208 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~ 208 (233)
.+..+|||||||+|.++..++...- -+++.+|+. ..++.++
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~ 95 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELE 95 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHH
Confidence 3457899999999988776554422 268999985 4666544
No 293
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.67 E-value=0.0013 Score=47.08 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=54.2
Q ss_pred HHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhh
Q 039903 10 PAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVA 85 (233)
Q Consensus 10 s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s 85 (233)
..+|..-.++.|+..|.. ++.+..|||+.+++ ++..+.+.|+.|...|++.....+ ..-.|++|+..
T Consensus 15 ~~aL~~~~r~~IL~~L~~----~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~g-r~~~y~l~~~~ 81 (118)
T 2jsc_A 15 GRALADPTRCRILVALLD----GVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVATYEG-RQVRYALADSH 81 (118)
T ss_dssp HHHHSSHHHHHHHHHHHT----TCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEEECS-SSEEEEESSHH
T ss_pred HHHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEC-CEEEEEEChHH
Confidence 456666678889999985 58999999999999 999999999999999999875321 23468888654
No 294
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.66 E-value=0.0024 Score=42.38 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=40.4
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 20 GVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 20 glfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.|.+.|.+. |.+++.|||+.+++ ++.-++|.|+.|...|++.+.
T Consensus 6 ~Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 367788887 69999999999999 999999999999999999986
No 295
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.65 E-value=0.0022 Score=43.41 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=40.9
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeec
Q 039903 20 GVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTS 71 (233)
Q Consensus 20 glfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~ 71 (233)
.|.+.|.+. |.+++.|||+.+++ ++.-++|.|+.|...|++.+..
T Consensus 6 ~Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe
Confidence 367788887 69999999999999 9999999999999999999973
No 296
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.63 E-value=0.00097 Score=54.58 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=48.2
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHh
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYF 88 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l 88 (233)
+.|++.|...+ ++.|+.|||+.+|+ +...+.|+|+.|+..|+++++ .++.|++++....|
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~----~~~~Y~lg~~~~~l 85 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR----ADGSYSLGPEMLRW 85 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC----TTSCEEECHHHHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----CCCeEEecHHHHHH
Confidence 34566665432 58999999999999 999999999999999999996 34489998765433
No 297
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.63 E-value=0.0014 Score=45.92 Aligned_cols=66 Identities=17% Similarity=0.340 Sum_probs=51.5
Q ss_pred HHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhh
Q 039903 11 AAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVA 85 (233)
Q Consensus 11 ~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s 85 (233)
.+|..-.++.|+..|.. ++.|+.|||+.+++ ++..+.+.|+.|...|++.....+ ....|++++..
T Consensus 21 ~~l~~~~r~~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~~~g-r~~~y~l~~~~ 86 (106)
T 1r1u_A 21 KALGDYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKRQG-QSMIYSLDDIH 86 (106)
T ss_dssp HHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEESSHH
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChHH
Confidence 34444567889999985 58999999999999 999999999999999999976321 12357776543
No 298
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.61 E-value=0.0022 Score=42.41 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=39.9
Q ss_pred ChhHHHHhc-----CCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 20 GVFEIIAKA-----GPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 20 glfd~L~~~-----~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.|++.|.+. | +|.|+.|||+.+|+ ++..+++-|..|...|++.+.
T Consensus 8 ~IL~~I~~~i~~~~g--~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 8 KIISIVQERQNMDDG--APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHTT--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhhccC--CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 366666665 5 69999999999999 999999999999999999987
No 299
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.60 E-value=0.0026 Score=44.68 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=50.1
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhh
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQM-PSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFV 89 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~-~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~ 89 (233)
++.|...|.. ++.+..|||+.+ ++ ++..+.+.|+.|...|++++..... ..-.|.+|+.+..+.
T Consensus 16 ~~~IL~~L~~----~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 16 KXVILXHLTH----GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHHHHTT----CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 3446666653 689999999999 99 9999999999999999999864321 123689998876654
No 300
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=96.59 E-value=0.0013 Score=53.79 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=51.4
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
+.|++.|...+ ++.|+.|||+.+++ +...+.|+|+.|+..|+++++ ++.|++++....|...
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~-----~~~Y~Lg~~~~~l~~~ 78 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS-----GGRWSLTPRVLSIGQH 78 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECGGGHHHHTT
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-----CCEEEEcHHHHHHHHH
Confidence 45666666533 58999999999999 999999999999999999995 5899999877666543
No 301
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=96.58 E-value=0.0019 Score=56.16 Aligned_cols=62 Identities=13% Similarity=-0.006 Sum_probs=46.8
Q ss_pred cceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccCC-----CCceEEecCcCCCC---CC-CCEEEe
Q 039903 169 IKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSSY-----SGVKHIGGIMLERI---PK-GDAILI 232 (233)
Q Consensus 169 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~~-----~ri~~~~gD~f~~~---P~-~D~~~l 232 (233)
..+|||+|||+|.++..+++.... ++.+|+. ..++.++++ -..++..+|.++.+ +. .|+|++
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~--V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~ 286 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAY--ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL 286 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCE--EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred CCeEEEcccchhHHHHHHHHcCCe--EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE
Confidence 689999999999999999997544 9999984 577777653 12356799998732 33 388875
No 302
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=96.55 E-value=0.003 Score=52.58 Aligned_cols=57 Identities=11% Similarity=0.122 Sum_probs=40.3
Q ss_pred HHHHhccccc-CcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhh-ccCCCCceEE
Q 039903 158 RIIDSSKGFE-QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQD-SSSYSGVKHI 216 (233)
Q Consensus 158 ~~~~~~~~~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~-a~~~~ri~~~ 216 (233)
.+++.+. .. ...+++|||||+|.++..++++ +.-+++.+|.. ..++. .+..+|+..+
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~ 134 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSM 134 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEE
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCccccee
Confidence 4455554 33 3479999999999999988886 66689999984 45655 3444565544
No 303
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=96.55 E-value=0.0034 Score=50.43 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=35.6
Q ss_pred HHHHhcccc-cCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhcc
Q 039903 158 RIIDSSKGF-EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSS 208 (233)
Q Consensus 158 ~~~~~~~~~-~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~ 208 (233)
.+++.++ . ....++||||||+|.++..++++ ...+++.+|+. ..++.+.
T Consensus 27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~ 77 (232)
T 3opn_A 27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKI 77 (232)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHH
T ss_pred HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHH
Confidence 3444444 3 23469999999999999999987 33489999984 4655544
No 304
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=96.54 E-value=0.0013 Score=58.24 Aligned_cols=71 Identities=11% Similarity=-0.014 Sum_probs=53.3
Q ss_pred HhcccccCcceEEEecCCccHHHHHHHHHcCC-CcEEEeech-HHHhhccCC------CCceEEecCcCC-C--CCCC-C
Q 039903 161 DSSKGFEQIKQLVDVGGGLGVNVNIIISNYLH-IKGVNFDLS-HVIQDSSSY------SGVKHIGGIMLE-R--IPKG-D 228 (233)
Q Consensus 161 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~v~~~a~~~------~ri~~~~gD~f~-~--~P~~-D 228 (233)
..++ .....+|+|+|||.|..+..+++..++ -+++.+|+. ..++.++++ .+|.++.+|..+ . .+.. |
T Consensus 99 ~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD 177 (456)
T 3m4x_A 99 TAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD 177 (456)
T ss_dssp HHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEE
T ss_pred HHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCC
Confidence 3344 455689999999999999999998764 689999984 466655542 579999999876 2 3443 8
Q ss_pred EEEe
Q 039903 229 AILI 232 (233)
Q Consensus 229 ~~~l 232 (233)
+|++
T Consensus 178 ~Il~ 181 (456)
T 3m4x_A 178 RIVV 181 (456)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 305
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.54 E-value=0.00066 Score=47.91 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=48.3
Q ss_pred HHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhh
Q 039903 16 ASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVA 85 (233)
Q Consensus 16 a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s 85 (233)
-.++.|+..|.. ++.|..|||+.+++ ++..+.+.|+.|...|+++....+ ....|++++.+
T Consensus 25 ~~r~~IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~g-r~~~y~l~~~~ 85 (108)
T 2kko_A 25 GRRLQILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSGGLVEARREG-TRQYYRIAGED 85 (108)
T ss_dssp STTHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEEET-TEEEEEESCHH
T ss_pred HHHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChHH
Confidence 345678888875 58999999999999 999999999999999999876321 22357777643
No 306
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.54 E-value=0.0026 Score=47.35 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=42.0
Q ss_pred ccCcceEEEecCCccH-HHHHHHHHcCCCcEEEeec-hHHHhhccCCCCceEEecCcCCCCCC----CCEE
Q 039903 166 FEQIKQLVDVGGGLGV-NVNIIISNYLHIKGVNFDL-SHVIQDSSSYSGVKHIGGIMLERIPK----GDAI 230 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~-~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~gD~f~~~P~----~D~~ 230 (233)
+....++||||||.|. .+..|+++ -+..++..|+ |..++ ++..|+|++.+. +|+|
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLI 93 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALI 93 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEE
T ss_pred CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEE
Confidence 4455799999999995 78877763 5677999997 44554 889999997762 3877
No 307
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=96.51 E-value=0.0042 Score=55.36 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=51.3
Q ss_pred CcceEEEecCCccHHHHHHHHHcC-CCcEEEeech-HHHhhccCC------CCceEEecCcCC-C--CCCC-CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDLS-HVIQDSSSY------SGVKHIGGIMLE-R--IPKG-DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~v~~~a~~~------~ri~~~~gD~f~-~--~P~~-D~~~l 232 (233)
...+|+|+|||.|..+..+++..+ .-+++.+|+. ..++.++++ ++|+++.+|..+ + .+.. |+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence 567999999999999999999875 5789999985 456655542 579999999987 3 3443 98875
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=96.50 E-value=0.0015 Score=43.48 Aligned_cols=59 Identities=12% Similarity=0.270 Sum_probs=45.1
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQM-----PSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~-----~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
+..|++.|...+ +++.|+.||++.+ ++ +..-++|.|+.|+..|++.+...+++..+|.+
T Consensus 19 r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~~ 82 (83)
T 2fu4_A 19 RLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHNFEGGKSVFEL 82 (83)
T ss_dssp HHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEeeCCCceEeec
Confidence 456888887641 0389999999999 88 99999999999999999998743212334543
No 309
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.46 E-value=0.0031 Score=44.63 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=50.5
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhc
Q 039903 20 GVFEIIAKAGPTAKISAVEIAAQM-PSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVL 90 (233)
Q Consensus 20 glfd~L~~~~~~~~~t~~elA~~~-~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~ 90 (233)
.|...|.. ++.+..|||+.+ ++ ++..+.+.|+.|...|++++..... ..-.|.+|+.|..+..
T Consensus 26 ~IL~~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~ 91 (112)
T 1z7u_A 26 SLMDELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD 91 (112)
T ss_dssp HHHHHHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHH
Confidence 46666765 589999999999 99 9999999999999999999864321 1135899999887653
No 310
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.46 E-value=0.0038 Score=41.45 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=40.0
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
..|++.|... ++.|..|||+.+++ +...+.+.|+.|...|++.+.
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 4577888775 58999999999999 999999999999999999954
No 311
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.44 E-value=0.0035 Score=45.90 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=50.6
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhc
Q 039903 20 GVFEIIAKAGPTAKISAVEIAAQM-PSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVL 90 (233)
Q Consensus 20 glfd~L~~~~~~~~~t~~elA~~~-~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~ 90 (233)
-|...|.. |+.+..||++.+ ++ ++..|.+.|+.|...|++++..... ..-.|++|+.|+.|..
T Consensus 30 ~IL~~L~~----g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 30 ILFYHMID----GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp HHHHHHTT----SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HHHHHHhc----CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHH
Confidence 35555553 699999999999 99 9999999999999999999874321 1247999999987764
No 312
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=96.43 E-value=0.0037 Score=42.71 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=50.3
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhh-HHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhc
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVM-LDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVL 90 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~-l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~ 90 (233)
+.++..|...+ .+.|..|||+.+++ +... +.++++.|...|++..+..+...-.+.+|+.|..+..
T Consensus 18 l~~L~~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~ 84 (95)
T 2pg4_A 18 LPTLLEFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAE 84 (95)
T ss_dssp HHHHHHHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHH
Confidence 34555666652 27999999999999 9999 9999999999999995422212345789999987664
No 313
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.34 E-value=0.0059 Score=44.14 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=52.4
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 35 ~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (139)
T 3bja_A 35 QFGVIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQ 103 (139)
T ss_dssp HHHHHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHH
Confidence 44577777775 58999999999999 9999999999999999999853221 12237889988876643
No 314
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=96.34 E-value=0.0039 Score=46.26 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=39.6
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
++.|..+||+.+++ ++..++++|..|...|+++..+. .+|.|.++.
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVRG--AKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECSS--SSSEEEESS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecCC--CCCCeeecC
Confidence 48999999999999 99999999999999999986532 356788764
No 315
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=96.31 E-value=0.0043 Score=45.79 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=49.9
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
+..++..|...+ +++|..|||+.+++ ++..+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 41 q~~vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 110 (150)
T 3fm5_A 41 SYSVLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDD 110 (150)
T ss_dssp HHHHHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHH
Confidence 445667776554 47899999999999 9999999999999999999853211 11237889988877644
No 316
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.31 E-value=0.0063 Score=44.02 Aligned_cols=67 Identities=21% Similarity=0.142 Sum_probs=52.5
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 36 ~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 104 (138)
T 1jgs_A 36 QFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQ 104 (138)
T ss_dssp HHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHH
Confidence 44567777765 48999999999999 9999999999999999999864321 11247899998877644
No 317
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=96.30 E-value=0.0049 Score=53.23 Aligned_cols=65 Identities=8% Similarity=-0.166 Sum_probs=49.8
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC---------------------CCceEEecCcCCC--
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY---------------------SGVKHIGGIMLER-- 223 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~---------------------~ri~~~~gD~f~~-- 223 (233)
...+|+|+|||+|.+++.++++.|..+++..|+ |+.++.++++ ++|+++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 347899999999999999999999889999998 4566655432 2388999998762
Q ss_pred -CCC-CCEEEe
Q 039903 224 -IPK-GDAILI 232 (233)
Q Consensus 224 -~P~-~D~~~l 232 (233)
.+. .|+|++
T Consensus 127 ~~~~~fD~I~l 137 (378)
T 2dul_A 127 ERHRYFHFIDL 137 (378)
T ss_dssp HSTTCEEEEEE
T ss_pred hccCCCCEEEe
Confidence 233 388765
No 318
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.30 E-value=0.0065 Score=43.95 Aligned_cols=67 Identities=7% Similarity=0.110 Sum_probs=52.8
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 40 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (140)
T 2nnn_A 40 QWAALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEA 108 (140)
T ss_dssp HHHHHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHH
Confidence 45577888776 48999999999999 9999999999999999999853210 11247889988876643
No 319
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=96.29 E-value=0.0049 Score=46.65 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=40.0
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
++.|.++||+.+++ ++..++++|..|...|+++..+. .+|.|.++.
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIRG--AHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECS--TTCEEEECS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEecC--CCCceEecC
Confidence 58999999999999 99999999999999999997642 356787764
No 320
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.28 E-value=0.0049 Score=43.18 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=49.2
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCC-CCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhh
Q 039903 20 GVFEIIAKAGPTAKISAVEIAAQMP-SSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFV 89 (233)
Q Consensus 20 glfd~L~~~~~~~~~t~~elA~~~~-~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~ 89 (233)
.|...|.. ++.+..||++.++ + ++..+.+.|+.|...|++++...+. ..-.|.+|+.|+.+.
T Consensus 29 ~IL~~L~~----~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 29 LIIFQINR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp HHHHHHTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred HHHHHHHh----CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHH
Confidence 35666653 6899999999995 9 9999999999999999999864321 113699999987655
No 321
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=96.27 E-value=0.0036 Score=45.72 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=52.3
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhc
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQM-PSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVL 90 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~-~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~ 90 (233)
.++.|...|.. ++.+..||++.+ ++ ++..+.+.|+.|...|++++..... ..-.|++|+.|..+..
T Consensus 36 w~l~IL~~L~~----g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 104 (131)
T 1yyv_A 36 WGVLILVALRD----GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSD 104 (131)
T ss_dssp HHHHHHHHGGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred cHHHHHHHHHc----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHH
Confidence 34556667764 689999999999 79 9999999999999999999864321 1237999999987663
No 322
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.27 E-value=0.0055 Score=45.57 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=49.8
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC-CCCceeccHhhhHhh
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD-DQRLYGLAHVAKYFV 89 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~-~~~~y~lt~~s~~l~ 89 (233)
+.|...|.. |+.+..||++.+++ +...+.+.|+.|...|++++..... ..-.|.+|+.|..+.
T Consensus 27 l~IL~~L~~----g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 27 MLIVRDAFE----GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF 90 (146)
T ss_dssp HHHHHHHHT----TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred HHHHHHHHh----CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence 335555654 68999999999999 9999999999999999999864310 124799999887654
No 323
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=96.27 E-value=0.0012 Score=54.13 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=47.8
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhh
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAK 86 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~ 86 (233)
+.|++.|...+ ++.|+.|||+.+|+ +...+.|+|+.|+..|+++++ ++.|++++...
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~-----~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD-----GSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES-----SSEEEECGGGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec-----CCEEEEcHHHH
Confidence 45666666433 58999999999999 999999999999999999995 58999987543
No 324
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.27 E-value=0.0098 Score=43.47 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=53.0
Q ss_pred HhhChhHHHHh-cCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccC--CCCCceeccHhhhHhhcC
Q 039903 17 SELGVFEIIAK-AGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAG--DDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 17 ~~lglfd~L~~-~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~lt~~s~~l~~~ 91 (233)
.++.|+..|.. . ++.|..+||+.+++ +...+.++++.|...|++++.... ...-.+.+|+.|..+...
T Consensus 36 ~~~~iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 106 (147)
T 2hr3_A 36 SQLVVLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYG 106 (147)
T ss_dssp HHHHHHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHH
Confidence 45667788876 5 58999999999999 999999999999999999986321 112347889988876644
No 325
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.27 E-value=0.0032 Score=45.37 Aligned_cols=62 Identities=16% Similarity=0.308 Sum_probs=49.3
Q ss_pred HHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhh
Q 039903 15 AASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVA 85 (233)
Q Consensus 15 ~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s 85 (233)
.-.++.|+..|.+ ++.++.|||+.+++ +...+.+.|+.|...|++.....+ ..-.|++++..
T Consensus 45 ~~~rl~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~~~g-r~~~y~l~~~~ 106 (122)
T 1r1t_A 45 DPNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQG-RHVYYQLQDHH 106 (122)
T ss_dssp CHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEESSHH
T ss_pred CHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChHH
Confidence 3357789999976 58999999999999 999999999999999999875321 22356776543
No 326
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=96.24 E-value=0.0065 Score=44.45 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=53.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
+..|+..|... ++.|..|||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 33 q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 101 (145)
T 3g3z_A 33 LFAVLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAP 101 (145)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHH
Confidence 45577778776 48999999999999 9999999999999999999853321 12357899998877644
No 327
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=96.22 E-value=0.0063 Score=50.61 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=44.5
Q ss_pred ccCcceEEEecCC------ccHHHHHHHHHcC-CCcEEEeechHHHhhccCCCCceE-EecCcCC-CCCCC-CEEEe
Q 039903 166 FEQIKQLVDVGGG------LGVNVNIIISNYL-HIKGVNFDLSHVIQDSSSYSGVKH-IGGIMLE-RIPKG-DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG------~G~~~~~l~~~~P-~l~~~v~Dlp~v~~~a~~~~ri~~-~~gD~f~-~~P~~-D~~~l 232 (233)
.+...+|||+||| .|. ..+++..| ..+++.+|+.+. .++|++ +.+|+.+ +++.. |+|+.
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvs 129 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIIS 129 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEE
Confidence 5666799999994 477 45567777 689999998655 257999 9999998 45443 88863
No 328
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=96.21 E-value=0.007 Score=44.13 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=44.6
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhh
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFV 89 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~ 89 (233)
++.|..+||+.+++ +...+.+.++.|...|++++. . ..|.+|+.+..+.
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~----~-~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK----E-DGVWITNNGTRSI 78 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----T-TEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec----C-CeEEEChhHHHHH
Confidence 58999999999999 999999999999999999986 3 7799999887765
No 329
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=96.21 E-value=0.01 Score=44.22 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=48.2
Q ss_pred HHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhc
Q 039903 24 IIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVL 90 (233)
Q Consensus 24 ~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~ 90 (233)
.|... ++.|..+||+.+++ +...+.+.++.|...|++++. .+..+.+|+.+..+..
T Consensus 48 ~l~~~---~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~----~~~~~~lT~~g~~~~~ 103 (155)
T 2h09_A 48 LIREV---GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI----PWRGVFLTAEGEKLAQ 103 (155)
T ss_dssp HHHHH---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE----TTTEEEECHHHHHHHH
T ss_pred HHHhC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe----cCCceEEChhHHHHHH
Confidence 56554 58999999999999 999999999999999999986 4667889999887653
No 330
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.19 E-value=0.0069 Score=44.50 Aligned_cols=67 Identities=6% Similarity=0.070 Sum_probs=52.4
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 44 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 112 (150)
T 2rdp_A 44 QFVALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEE 112 (150)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHH
Confidence 44567777776 58999999999999 9999999999999999999864221 12347889988876643
No 331
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.19 E-value=0.0099 Score=43.34 Aligned_cols=66 Identities=6% Similarity=-0.015 Sum_probs=51.5
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|. . ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 39 ~~~iL~~l~-~---~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 106 (146)
T 2gxg_A 39 DFLVLRATS-D---GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNK 106 (146)
T ss_dssp HHHHHHHHT-T---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHh-c---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHH
Confidence 445667776 4 69999999999999 9999999999999999999864321 12247889988876643
No 332
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=96.14 E-value=0.0064 Score=44.61 Aligned_cols=67 Identities=10% Similarity=0.173 Sum_probs=51.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccC--CCCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAG--DDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~lt~~s~~l~~~ 91 (233)
++.++..|... ++.|..|||+.+++ ++..+.++++.|...|++++.... .....+.+|+.|..+...
T Consensus 42 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~ 110 (148)
T 3nrv_A 42 EWRIISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
T ss_dssp HHHHHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHH
Confidence 45577777776 58999999999999 999999999999999999986321 123467889988876644
No 333
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.13 E-value=0.012 Score=43.65 Aligned_cols=68 Identities=15% Similarity=0.037 Sum_probs=53.8
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
.++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.+..+...
T Consensus 45 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 114 (154)
T 2eth_A 45 TELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGE 114 (154)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHH
Confidence 455678888776 48999999999999 9999999999999999999864221 12347889888876643
No 334
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.12 E-value=0.006 Score=44.07 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=51.7
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..|||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.+..+...
T Consensus 31 ~~~iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~ 99 (138)
T 3bpv_A 31 QVACLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPL 99 (138)
T ss_dssp HHHHHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHH
Confidence 44567777775 58999999999999 9999999999999999999853210 11237788888776543
No 335
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.10 E-value=0.011 Score=44.29 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=53.6
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
+..|+..|... ++.|..|||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 48 q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 116 (162)
T 3k0l_A 48 QFTALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQ 116 (162)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHH
Confidence 34577778776 58999999999999 9999999999999999999864321 12357899998877644
No 336
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.08 E-value=0.0098 Score=43.09 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=54.5
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccC--CCCCceeccHhhhHhh-cC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAG--DDQRLYGLAHVAKYFV-LN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~lt~~s~~l~-~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.+.++.|...|++++.... .....|.+|+.+..+. ..
T Consensus 33 ~~~iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~ 102 (142)
T 3bdd_A 33 RYSILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITN 102 (142)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTS
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 44577788776 48999999999999 999999999999999999986432 1233588999999887 54
No 337
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=96.08 E-value=0.0061 Score=44.50 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=52.7
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
+..|+..|... ++.|..|||+.+++ ++..+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 39 ~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 107 (143)
T 3oop_A 39 QWSVLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTE 107 (143)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHH
Confidence 44577777776 58999999999999 9999999999999999999864321 22357889988877644
No 338
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=96.08 E-value=0.01 Score=40.86 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=46.5
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhc
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVL 90 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~ 90 (233)
++.+..+||+.+++ +...|.|+|.-|...|+++....++.-+...+|+.++.++.
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l~ 89 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAA 89 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHHH
Confidence 57899999999999 99999999999999999998654333455788999987653
No 339
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.06 E-value=0.0055 Score=42.30 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=41.9
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeec
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTS 71 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~ 71 (233)
.+..|+..|... ++.|..|||+.+++ +...+.+.|+.|...|++.+..
T Consensus 21 ~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEe
Confidence 345578888765 58999999999999 9999999999999999999863
No 340
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.05 E-value=0.0067 Score=44.26 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=48.1
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
.+..|+..|... ++.|..|||+.+++ ++..+.++++.|...|++++..... ..-.+.+|+.|+.+...
T Consensus 38 ~~~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 107 (142)
T 3ech_A 38 PDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLH 107 (142)
T ss_dssp HHHHHHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHH
Confidence 345577778776 58999999999999 9999999999999999999864321 11247888888876644
No 341
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=96.04 E-value=0.0072 Score=44.49 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=52.5
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccC--CCCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAG--DDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~lt~~s~~l~~~ 91 (233)
+..|+..|... ++.|..+||+.+++ +...+.++++.|...|++++.... ...-.+.+|+.|..+...
T Consensus 42 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 110 (152)
T 3bj6_A 42 QRAILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITA 110 (152)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHH
Confidence 44577777775 48999999999999 999999999999999999986321 112257888888776543
No 342
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=96.04 E-value=0.0044 Score=53.79 Aligned_cols=65 Identities=14% Similarity=-0.016 Sum_probs=50.7
Q ss_pred CcceEEEecCCccHHHHHHHHHcCC-CcEEEeec-hHHHhhccCC-------CC-ceEEecCcCCC----CCCC-CEEEe
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLH-IKGVNFDL-SHVIQDSSSY-------SG-VKHIGGIMLER----IPKG-DAILI 232 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~a~~~-------~r-i~~~~gD~f~~----~P~~-D~~~l 232 (233)
...+|+|+++|+|.+++.++++.++ -+++..|+ |..++.++++ ++ ++++.+|.++- .+.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4578999999999999999998765 56899998 5677777653 35 99999998762 2333 88876
No 343
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=96.03 E-value=0.0095 Score=44.08 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=51.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccC--CCCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAG--DDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++.... ...-.+.+|+.|..+...
T Consensus 45 ~~~iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 113 (155)
T 3cdh_A 45 EWRVLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAES 113 (155)
T ss_dssp HHHHHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHH
Confidence 34466667665 58999999999999 999999999999999999975321 012357899998876644
No 344
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.02 E-value=0.0068 Score=43.97 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=52.5
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
+..|+..|... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.+..+...
T Consensus 38 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 106 (142)
T 2fbi_A 38 QWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVS 106 (142)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHH
Confidence 45577778776 48999999999999 9999999999999999999863211 11237889888876643
No 345
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=96.02 E-value=0.0084 Score=44.67 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=50.7
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccC--CCCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAG--DDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..|||+.+++ +...+.++++.|...|++++.... .....+.+|+.|..+...
T Consensus 51 ~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 119 (162)
T 2fa5_A 51 EWRVITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYET 119 (162)
T ss_dssp HHHHHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHH
Confidence 34567777765 58999999999999 999999999999999999985321 112457889888876643
No 346
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.00 E-value=0.0087 Score=43.60 Aligned_cols=66 Identities=9% Similarity=-0.009 Sum_probs=51.9
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
..++..|... ++.|..+||+.+++ +...+.++++.|...|++.+..... ..-.+.+|+.+..+...
T Consensus 32 ~~iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 99 (144)
T 1lj9_A 32 YLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp HHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHH
Confidence 3467777775 48999999999999 9999999999999999999864321 12247889988876643
No 347
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=95.97 E-value=0.0042 Score=42.51 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=42.7
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhc
Q 039903 33 KISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVL 90 (233)
Q Consensus 33 ~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~ 90 (233)
+.|..|||+.+++ +...+.++++.|...|++... .+.....+.+|+.|..+..
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~-~d~R~~~v~LT~~G~~~~~ 82 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE-LEGRTKIIRLTDKGQKIAQ 82 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE-EETTEEEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC-CCCCeEEEEEChhHHHHHH
Confidence 3899999999999 999999999999999999433 1111235899999987754
No 348
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.96 E-value=0.007 Score=44.12 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=52.6
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.+..+...
T Consensus 35 ~~~iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (145)
T 2a61_A 35 QFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEK 103 (145)
T ss_dssp HHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHH
Confidence 45577777765 58999999999999 9999999999999999999863210 11257889988876643
No 349
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.95 E-value=0.0081 Score=45.32 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=52.8
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..|||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.+..+...
T Consensus 47 ~~~iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 115 (168)
T 2nyx_A 47 QFRTLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQ 115 (168)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 44577777776 58999999999999 9999999999999999999854321 12247899998876644
No 350
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.90 E-value=0.01 Score=43.16 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=49.9
Q ss_pred hChhHHH-HhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhc
Q 039903 19 LGVFEII-AKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVL 90 (233)
Q Consensus 19 lglfd~L-~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~ 90 (233)
..|+..| ... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.+..+..
T Consensus 40 ~~iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (146)
T 2fbh_A 40 WLVLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 107 (146)
T ss_dssp HHHHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHH
Confidence 3466677 443 58999999999999 9999999999999999999863210 1224778888776653
No 351
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.88 E-value=0.018 Score=39.51 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=51.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHH-hCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAA-QMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~-~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
+..|+-.|... ++.|..+||+ .+++ +...+.|=++.|...|+++.+ +++ +.+|+.|+.+...
T Consensus 18 QfsiL~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~----~~D-l~LT~~G~~~l~~ 80 (95)
T 1bja_A 18 TATILITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS----GDG-LIITGEAQDIISN 80 (95)
T ss_dssp HHHHHHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE----TTE-EEECHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC----CCC-eeeCHhHHHHHHH
Confidence 34456667776 4899999999 9999 999999999999999999943 344 9999999987654
No 352
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=95.88 E-value=0.016 Score=43.25 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=64.6
Q ss_pred HHhhChhHHHHhcCCCCCCCHHHHHHhCC-CCCCCChhhHHHHHHHHhcCCceeeeccCC-------CCCceeccHhhhH
Q 039903 16 ASELGVFEIIAKAGPTAKISAVEIAAQMP-SSNPNAAVMLDRILRLLVTHRVLRCTSAGD-------DQRLYGLAHVAKY 87 (233)
Q Consensus 16 a~~lglfd~L~~~~~~~~~t~~elA~~~~-~~~~~~~~~l~rlL~~L~~~gll~~~~~~~-------~~~~y~lt~~s~~ 87 (233)
-.++.|+..|...+ .+..|+.||++.++ + +...++|-|+.|+..|++++...++ ....|++|+.++.
T Consensus 29 ~tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~ 103 (151)
T 3u1d_A 29 ETRLDVLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIA 103 (151)
T ss_dssp HHHHHHHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHH
T ss_pred hHHHHHHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHH
Confidence 34677888887753 24689999999999 8 9999999999999999999653221 1128999999997
Q ss_pred hhcCCCCCCccchhccccCchhhHHHHH
Q 039903 88 FVLNRDGVSLCPSRPWLETKPYEIYDAV 115 (233)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~L~~~l 115 (233)
++...+ .+... ..|..|.+.+
T Consensus 104 ~l~~y~--~la~~-----~alr~l~~~v 124 (151)
T 3u1d_A 104 LLRAVS--MYEEA-----AVWRSVYEQM 124 (151)
T ss_dssp HHHHTT--CSTHH-----HHTHHHHHHS
T ss_pred HHHHhH--HHhHH-----HHHHHHHHHh
Confidence 665432 33321 1677777776
No 353
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.85 E-value=0.0085 Score=44.18 Aligned_cols=66 Identities=9% Similarity=0.243 Sum_probs=49.6
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee----ccCCCCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT----SAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~----~~~~~~~~y~lt~~s~~l~~~ 91 (233)
+..++..| .. ++.|..|||+.+++ +...+.++++.|...|++++. ..+...-.+.+|+.|..+...
T Consensus 40 q~~iL~~l-~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~ 109 (151)
T 3kp7_A 40 QSHVLNML-SI---EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKE 109 (151)
T ss_dssp HHHHHHHH-HH---SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHH
T ss_pred HHHHHHHH-Hc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHH
Confidence 34477778 54 59999999999999 999999999999999999972 111122356788888877644
No 354
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.85 E-value=0.0079 Score=44.84 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=44.9
Q ss_pred HHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 10 PAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 10 s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
..+|++.+.|... . + ++.|..+||+.+++ ++..++++|..|...|+++..+ +.|.|.++.
T Consensus 14 ~yAl~~L~~La~~----~-~--~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r---G~GGy~L~~ 73 (149)
T 1ylf_A 14 SIAVHILSILKNN----P-S--SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR---GPGGAGLLK 73 (149)
T ss_dssp HHHHHHHHHHHHS----C-G--GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC------CCEEESS
T ss_pred HHHHHHHHHHHhC----C-C--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc---CCCceEeCC
Confidence 3456665555321 1 1 58999999999999 9999999999999999998753 267787765
No 355
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.84 E-value=0.011 Score=43.72 Aligned_cols=67 Identities=9% Similarity=0.095 Sum_probs=52.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceee--eccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRC--TSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~--~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++ ..... ..-.+.+|+.|..+...
T Consensus 43 ~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~ 113 (154)
T 2qww_A 43 QLAMINVIYST---PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKR 113 (154)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHH
Confidence 44567777776 48999999999999 99999999999999999998 43211 12358899999877644
No 356
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=95.82 E-value=0.01 Score=43.81 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=52.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.+..+...
T Consensus 49 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 49 QYLVMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence 44567777765 58999999999999 9999999999999999999863210 12257889999887654
No 357
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.79 E-value=0.0073 Score=40.31 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=46.5
Q ss_pred HHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHh
Q 039903 16 ASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHV 84 (233)
Q Consensus 16 a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~ 84 (233)
.....|.+.|... +.|+.|||+++|+ +...+++.|..|...|++..... ..=.|+++..
T Consensus 17 ~~~~~IL~lL~~~----g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~~--~PP~W~~~~~ 75 (82)
T 1oyi_A 17 EIVCEAIKTIGIE----GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSDD--IPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHSSS----TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECSS--SSCEEESCC-
T ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCCC--CCCcceeccC
Confidence 3455678888864 4999999999999 99999999999999999998521 2345666654
No 358
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.74 E-value=0.01 Score=44.29 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=52.6
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..|||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 55 q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 123 (161)
T 3e6m_A 55 KLRLLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAE 123 (161)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHH
Confidence 34477777776 48999999999999 9999999999999999999864321 12357889998877644
No 359
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.72 E-value=0.013 Score=42.48 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=53.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
+..++..|...|. ++.|..|||+.+++ ++..+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 33 ~~~vL~~l~~~~~-~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~ 103 (139)
T 3eco_A 33 QGHTLGYLYAHQQ-DGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEA 103 (139)
T ss_dssp HHHHHHHHHHSTT-TCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHH
Confidence 4456777777521 38999999999999 9999999999999999999864321 12356889988877644
No 360
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.71 E-value=0.011 Score=42.99 Aligned_cols=67 Identities=6% Similarity=0.128 Sum_probs=52.7
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.+..+...
T Consensus 39 ~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (142)
T 2bv6_A 39 QFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPE 107 (142)
T ss_dssp HHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHH
Confidence 44577777765 48999999999999 9999999999999999999864321 12257889988876644
No 361
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.71 E-value=0.0072 Score=44.67 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=52.1
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.+..+...
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEE 107 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHH
Confidence 34467777765 48999999999999 9999999999999999999864211 11257889888776643
No 362
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.68 E-value=0.011 Score=43.98 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=51.9
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
..++..|... ++.|..|||+.+++ ++..+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 120 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPD 120 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHH
Confidence 3466667665 58999999999999 9999999999999999999864321 12357889988877644
No 363
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.65 E-value=0.01 Score=44.28 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=52.4
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccC--CCCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAG--DDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++.... ...-.+.+|+.+..+...
T Consensus 54 ~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 122 (162)
T 3cjn_A 54 KMRALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDR 122 (162)
T ss_dssp HHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 44577777775 58999999999999 999999999999999999986321 112347888888876643
No 364
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=95.64 E-value=0.0078 Score=43.34 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=41.7
Q ss_pred hhChhHHHHhcCCCCC-CCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 18 ELGVFEIIAKAGPTAK-ISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~-~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
+..|+..|...+ +| +|..|||+.+++ +...+.|.|+.|...|++.+.
T Consensus 28 e~~il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 556888888764 46 899999999999 999999999999999999985
No 365
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.62 E-value=0.0085 Score=42.58 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=44.6
Q ss_pred HHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 12 AMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 12 ~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
++..-.++.|+..|.+ ++.|..+||+.+++ ++..+.+.|+.|...|++...
T Consensus 28 ~l~~~~~~~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 28 ALATPSRLMILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHCCHHHHHHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HhCCHHHHHHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3444467889999987 48999999999999 999999999999999999875
No 366
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.61 E-value=0.0095 Score=43.54 Aligned_cols=67 Identities=7% Similarity=0.110 Sum_probs=52.8
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 42 ~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 42 QYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 44567777765 48999999999999 9999999999999999999854311 12347889998877654
No 367
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=95.59 E-value=0.023 Score=45.72 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=51.5
Q ss_pred HHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhh----ccCC--CCceEEec-CcCCCCCC-CC
Q 039903 157 NRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQD----SSSY--SGVKHIGG-IMLERIPK-GD 228 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~----a~~~--~ri~~~~g-D~f~~~P~-~D 228 (233)
.++.+.+. +....++||+||+.|.++.-.+....--++..+|+-..-.. .+.. .-|+|+.+ |+|.--|. .|
T Consensus 68 ~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~D 146 (267)
T 3p8z_A 68 QWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCD 146 (267)
T ss_dssp HHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCCS
T ss_pred HHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcccc
Confidence 34555553 66668999999999999998887766667889997532211 1111 67999999 98862223 48
Q ss_pred EEE
Q 039903 229 AIL 231 (233)
Q Consensus 229 ~~~ 231 (233)
+++
T Consensus 147 tll 149 (267)
T 3p8z_A 147 TLL 149 (267)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 368
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.57 E-value=0.0062 Score=44.44 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=49.5
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 20 GVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 20 glfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
.|...|... ++.|..|||+.+++ ++..+.++++.|...|++++..... ..-.+.+|+.|+.+...
T Consensus 40 ~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (140)
T 3hsr_A 40 IVLMAIEND---EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSP 106 (140)
T ss_dssp HHHHHSCTT---CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHH
T ss_pred HHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHH
Confidence 355555544 58999999999999 9999999999999999999864321 12367889988876644
No 369
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=95.57 E-value=0.012 Score=44.49 Aligned_cols=46 Identities=28% Similarity=0.366 Sum_probs=40.0
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
++.|.++||+.+++ ++..++++|..|...|+++..+. .+|.|++..
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar 72 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTVG--KNGGYQLDL 72 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEECS--TTCEEECCS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecC--CCCCeEecC
Confidence 58999999999999 99999999999999999987532 456798875
No 370
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=95.56 E-value=0.015 Score=42.43 Aligned_cols=67 Identities=12% Similarity=0.288 Sum_probs=49.2
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccC--CCCCceeccHhhhHhhcC
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAG--DDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~lt~~s~~l~~~ 91 (233)
.+..|+..|... +.|..|||+.+++ +...+.++++.|...|++++.... ...-.+.+|+.+..+...
T Consensus 39 ~~~~iL~~l~~~----~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~ 107 (146)
T 3tgn_A 39 TQEHILMLLSEE----SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEE 107 (146)
T ss_dssp HHHHHHHHHTTC----CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHH
T ss_pred HHHHHHHHHHhC----CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHH
Confidence 355567777763 4999999999999 999999999999999999985421 122467888888766543
No 371
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.54 E-value=0.011 Score=43.85 Aligned_cols=68 Identities=7% Similarity=0.072 Sum_probs=50.4
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|...+ ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 49 ~~~iL~~L~~~~--~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 118 (160)
T 3boq_A 49 KFDAMAQLARNP--DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQ 118 (160)
T ss_dssp HHHHHHHHHHCT--TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHH
Confidence 445777784322 58999999999999 9999999999999999999853210 11237889988876643
No 372
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=95.53 E-value=0.0078 Score=41.54 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=51.3
Q ss_pred HHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhh
Q 039903 10 PAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVA 85 (233)
Q Consensus 10 s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s 85 (233)
..+|..-.++.|+..|... ++.++.|||+.+|+ ++..+.+.|+.|... ++.....+ ..-.|++++..
T Consensus 21 ~~aL~~~~Rl~IL~~l~~~---~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~g-r~~~y~l~~~~ 87 (99)
T 2zkz_A 21 LKTMAHPMRLKIVNELYKH---KALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQG-LEIYYSINNPK 87 (99)
T ss_dssp HHHHCSHHHHHHHHHHHHH---SCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEET-TEEEEECCCHH
T ss_pred HHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEeC-cEEEEEEChHH
Confidence 3455555788899666554 58999999999999 999999999999999 99865321 23467777654
No 373
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=95.51 E-value=0.014 Score=50.17 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=44.1
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC--------------CCceEEecCcCC
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY--------------SGVKHIGGIMLE 222 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~--------------~ri~~~~gD~f~ 222 (233)
..++|+=||||.|..++++++ +|.-+++++|+ |.|++.++++ +|++.+.+|.++
T Consensus 205 ~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~ 273 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP 273 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH
T ss_pred CCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH
Confidence 357899999999999999997 56678999998 5688877641 578999999875
No 374
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=95.48 E-value=0.011 Score=42.46 Aligned_cols=68 Identities=7% Similarity=0.077 Sum_probs=51.3
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccC--CCCCceeccHhhhHhhcC
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAG--DDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~lt~~s~~l~~~ 91 (233)
..+...|...+ +++.|..|||+.+++ +...+.++++.|...|++++.... ...-.+.+|+.|..+...
T Consensus 40 ~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~ 109 (127)
T 2frh_A 40 FAVLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 109 (127)
T ss_dssp HHHHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 34666666641 147999999999999 999999999999999999985332 123356889988876643
No 375
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.48 E-value=0.014 Score=44.06 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=51.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|...+ ++.|..|||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|+.+...
T Consensus 55 q~~vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 124 (166)
T 3deu_A 55 HWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAE 124 (166)
T ss_dssp HHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHH
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHH
Confidence 445677777632 57999999999999 9999999999999999999864321 12357888888877644
No 376
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.46 E-value=0.011 Score=43.14 Aligned_cols=65 Identities=11% Similarity=0.207 Sum_probs=52.1
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCC---ceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQR---LYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~---~y~lt~~s~~l~~~ 91 (233)
+..|+..|...| + |..+||+.+++ ++..+.++++.|...|++++...+ .+. .+.+|+.|..+...
T Consensus 39 ~~~iL~~l~~~~---~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~D~R~~~~~LT~~G~~~~~~ 106 (144)
T 3f3x_A 39 DFSILKATSEEP---R-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDS-KDRRIVIVEITPKGRQVLLE 106 (144)
T ss_dssp HHHHHHHHHHSC---E-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHCC---C-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCC-CCCceEEEEECHHHHHHHHH
Confidence 456777787763 5 99999999999 999999999999999999986432 111 58899999877644
No 377
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.45 E-value=0.016 Score=41.91 Aligned_cols=68 Identities=9% Similarity=0.210 Sum_probs=50.9
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhc
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVL 90 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~ 90 (233)
+..++..|...+. ++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.+..+..
T Consensus 36 ~~~iL~~l~~~~~-~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~ 105 (141)
T 3bro_A 36 QMTIIDYLSRNKN-KEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET 105 (141)
T ss_dssp HHHHHHHHHHTTT-SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred HHHHHHHHHHCCC-CCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHH
Confidence 3446677777530 27999999999999 9999999999999999999864321 1125678888876553
No 378
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=95.45 E-value=0.016 Score=42.51 Aligned_cols=69 Identities=10% Similarity=0.034 Sum_probs=45.0
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
+..++..|...+. ++.|..|||+.+++ ++..+.++++.|...|++++..... ..-.+.+|+.|+.+...
T Consensus 43 q~~vL~~l~~~~~-~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 113 (148)
T 3jw4_A 43 QGRMIGYIYENQE-SGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEE 113 (148)
T ss_dssp HHHHHHHHHHHTT-TCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHH
Confidence 3456667766521 48999999999999 9999999999999999999864321 12357788888877644
No 379
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=95.45 E-value=0.014 Score=43.32 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 8 VLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 8 ~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
....+|++.+.| +..+ ++ |.++||+.+++ ++..++++|..|...|+++..+ ++|.|.++.
T Consensus 7 ~~~yAl~~L~~L------a~~~--~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r---G~GGy~Lar 66 (145)
T 1xd7_A 7 RLAVAIHILSLI------SMDE--KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA---GVPGASLKK 66 (145)
T ss_dssp HHHHHHHHHHHH------HTCS--CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS---SSSSCEESS
T ss_pred HHHHHHHHHHHH------HhCC--CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec---CCCCceecC
Confidence 344555555544 3332 35 99999999999 9999999999999999998764 256687764
No 380
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=95.43 E-value=0.028 Score=41.72 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=50.4
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 20 GVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 20 glfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
.+.-.|...+ ++.+..|||+.+++ +...+.++++-|...|++++...+. ..-...+|+.|..+...
T Consensus 35 ~vL~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~ 102 (151)
T 4aik_A 35 VTLYNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQ 102 (151)
T ss_dssp HHHHHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHH
T ss_pred HHHHHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHH
Confidence 3555666544 46788999999999 9999999999999999999865431 11247789988877644
No 381
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=95.37 E-value=0.041 Score=47.33 Aligned_cols=63 Identities=22% Similarity=0.170 Sum_probs=44.0
Q ss_pred cceEEEecCCccHHHHHH--------HHHc-------CCCcEEEeechHH--------HhhccC----------C---C-
Q 039903 169 IKQLVDVGGGLGVNVNII--------ISNY-------LHIKGVNFDLSHV--------IQDSSS----------Y---S- 211 (233)
Q Consensus 169 ~~~vvDvGGG~G~~~~~l--------~~~~-------P~l~~~v~Dlp~v--------~~~a~~----------~---~- 211 (233)
.-+|+|+|||+|..+..+ .+++ |.+++..-|||.. ++.... . +
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 578999999999877665 4455 8899999999852 122111 0 1
Q ss_pred CceEEecCcCC-CCCCC--CEEE
Q 039903 212 GVKHIGGIMLE-RIPKG--DAIL 231 (233)
Q Consensus 212 ri~~~~gD~f~-~~P~~--D~~~ 231 (233)
=+.-++|.|+. .+|.. |+++
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~ 155 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFH 155 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEE
T ss_pred EEEecChhhhcccCCCcceEEEE
Confidence 15667899998 78875 7764
No 382
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=95.37 E-value=0.016 Score=45.81 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=46.9
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
++.+..+||+.+++ ++..+.+.++-|...|++++. ....+.+|+.|+.+...
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~----~~~~i~LT~~G~~~~~~ 70 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD----KKAGYLLTDLGLKLVSD 70 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTTEEEECHHHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe----cCCCeEECHHHHHHHHH
Confidence 68999999999999 999999999999999999997 56789999999876543
No 383
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=95.36 E-value=0.026 Score=41.74 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=46.9
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceecc
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQM-----PSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLA 82 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~-----~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt 82 (233)
+.-|++.|...+ ++.|++||.+.+ ++ +..-++|.|+.|+..|++.+...+++..+|.++
T Consensus 24 R~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 24 RHAILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 455899998754 689999999999 56 899999999999999999987543223457653
No 384
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.34 E-value=0.0096 Score=43.88 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=50.2
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhc
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVL 90 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~ 90 (233)
+..|...|... ++.|..|||+.+++ ++..+.++++.|...|++++..... ..-.+.+|+.|..+..
T Consensus 43 q~~iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 110 (149)
T 4hbl_A 43 QYLVMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQE 110 (149)
T ss_dssp HHHHHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHH
Confidence 44567777765 58999999999999 9999999999999999999864321 1235788888887654
No 385
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=95.13 E-value=0.029 Score=40.76 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=48.6
Q ss_pred HHHhhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 15 AASELGVFEIIAKAGPTAKISAVEIAAQM-----PSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 15 ~a~~lglfd~L~~~~~~~~~t~~elA~~~-----~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
+.-+.-|++.|...+ ++.|++||.+.+ ++ +..-++|.|+.|+..|++.+...+++..+|..
T Consensus 10 T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 445677899998754 689999999998 67 99999999999999999998754323345654
No 386
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.09 E-value=0.021 Score=44.89 Aligned_cols=66 Identities=14% Similarity=-0.019 Sum_probs=51.7
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
..|+..|... ++.|..|||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 51 ~~iL~~L~~~---~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 118 (207)
T 2fxa_A 51 HHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWS 118 (207)
T ss_dssp HHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHH
T ss_pred HHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHH
Confidence 3466777766 48999999999999 9999999999999999999864311 11267899999876643
No 387
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=95.04 E-value=0.026 Score=44.31 Aligned_cols=69 Identities=9% Similarity=0.140 Sum_probs=55.3
Q ss_pred HHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccC----CCCCceeccHhh
Q 039903 10 PAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAG----DDQRLYGLAHVA 85 (233)
Q Consensus 10 s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~----~~~~~y~lt~~s 85 (233)
..+|..-.++.|+..|.. +|.+..|||+.+++ +...+.+.|+.|...|++...... +..-.|++|+.+
T Consensus 9 lkaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 9 LDVLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 456666778899999976 69999999999999 999999999999999999986431 123467777655
Q ss_pred h
Q 039903 86 K 86 (233)
Q Consensus 86 ~ 86 (233)
.
T Consensus 81 ~ 81 (202)
T 2p4w_A 81 R 81 (202)
T ss_dssp E
T ss_pred H
Confidence 4
No 388
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=95.00 E-value=0.018 Score=46.89 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=43.4
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHH--cCCCcEEE--eechHHHhhccCCCCc---eEEec-CcCCCCCC-CC
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISN--YLHIKGVN--FDLSHVIQDSSSYSGV---KHIGG-IMLERIPK-GD 228 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~--~P~l~~~v--~Dlp~v~~~a~~~~ri---~~~~g-D~f~~~P~-~D 228 (233)
++-+.+- ++...+|||+||+.|.++.-.+++ -..+++.+ .|+ +..........+ .++.| ||++.-|. .|
T Consensus 64 EIdeK~l-ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~D 141 (269)
T 2px2_A 64 WLVERRF-VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEISD 141 (269)
T ss_dssp HHHHTTS-CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCCCS
T ss_pred HHHHcCC-CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCCCC
Confidence 3444442 677899999999999999999886 32224433 343 111111111454 55557 99984443 48
Q ss_pred EEE
Q 039903 229 AIL 231 (233)
Q Consensus 229 ~~~ 231 (233)
+++
T Consensus 142 vVL 144 (269)
T 2px2_A 142 TLL 144 (269)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 389
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.99 E-value=0.02 Score=43.07 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=49.8
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCC---ceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQR---LYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~---~y~lt~~s~~l~~~ 91 (233)
++.|+..|...+. ++.|..+||+.+++ +...+.++++.|...|++++.... .+. .+.+|+.|..+...
T Consensus 48 q~~vL~~l~~~~~-~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~DrR~~~l~LT~~G~~~~~~ 118 (168)
T 3u2r_A 48 QYNTLRLLRSVHP-EGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKP-ENRRVVEVALTDAGLKLLKD 118 (168)
T ss_dssp HHHHHHHHHHHTT-SCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCC-CCCCeeEeEECHHHHHHHHH
Confidence 4456667776421 48999999999999 999999999999999999986432 122 57889998877654
No 390
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=94.87 E-value=0.039 Score=46.72 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=47.4
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccC---------------------------CCCceEEecC
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSS---------------------------YSGVKHIGGI 219 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~---------------------------~~ri~~~~gD 219 (233)
.+...||.+|||.....-.+...+|++++.=+|+|+|++.-++ .+++.++++|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4568999999999999999999899999999999998763221 1689999999
Q ss_pred cCC
Q 039903 220 MLE 222 (233)
Q Consensus 220 ~f~ 222 (233)
+.+
T Consensus 176 L~d 178 (334)
T 1rjd_A 176 LND 178 (334)
T ss_dssp TTC
T ss_pred CCC
Confidence 987
No 391
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.80 E-value=0.037 Score=42.57 Aligned_cols=70 Identities=10% Similarity=0.089 Sum_probs=54.2
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
.+..|+..|...+ .++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 42 ~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 113 (189)
T 3nqo_A 42 RQYMTILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVT 113 (189)
T ss_dssp HHHHHHHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 3556777777521 158999999999999 9999999999999999999864321 12457899999877654
No 392
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=94.71 E-value=0.03 Score=39.08 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=40.1
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
++.|+..+...| .+.|..+||+.+|+ +...+++.|+.|...|+++..
T Consensus 20 ~l~Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456777775543 37899999999999 999999999999999999875
No 393
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.70 E-value=0.034 Score=36.25 Aligned_cols=56 Identities=13% Similarity=0.257 Sum_probs=48.2
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceecc
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLA 82 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt 82 (233)
.+-.|++.|.++| .|++..|||+++|+ +..-+...|..|-.-|.+..+ .--.|+++
T Consensus 20 ~eekVLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP----kRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT----SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE----ETTEEEES
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC----CCceeeCC
Confidence 3557899999987 79999999999999 999999999999999999886 35566554
No 394
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=94.69 E-value=0.034 Score=40.42 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=42.9
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 21 VFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 21 lfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
++..|.... ++.|..|||+.+++ +...+.++++.|...|++++....++...|.++.
T Consensus 31 il~~L~~~~--~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 31 VYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp HHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred HHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 466664222 58999999999999 9999999999999999999863221234555554
No 395
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=94.67 E-value=0.02 Score=51.73 Aligned_cols=73 Identities=15% Similarity=-0.028 Sum_probs=49.7
Q ss_pred HHHhcccccCcceEEEecCCccHHHHHHHHHcC------------------CCcEEEeech-HHHhhccCC------CC-
Q 039903 159 IIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYL------------------HIKGVNFDLS-HVIQDSSSY------SG- 212 (233)
Q Consensus 159 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P------------------~l~~~v~Dlp-~v~~~a~~~------~r- 212 (233)
+++... -....+|+|.+||+|.++..+.+... ..++..+|+. ..++.|+.+ +.
T Consensus 161 mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~ 239 (541)
T 2ar0_A 161 IIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 239 (541)
T ss_dssp HHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred HHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc
Confidence 344433 33456899999999999988877532 2468999984 566666532 32
Q ss_pred ----ceEEecCcCC-C-CC--CCCEEEe
Q 039903 213 ----VKHIGGIMLE-R-IP--KGDAILI 232 (233)
Q Consensus 213 ----i~~~~gD~f~-~-~P--~~D~~~l 232 (233)
+.+..+|.+. + .+ ..|+|+.
T Consensus 240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~ 267 (541)
T 2ar0_A 240 LDHGGAIRLGNTLGSDGENLPKAHIVAT 267 (541)
T ss_dssp GGGTBSEEESCTTSHHHHTSCCEEEEEE
T ss_pred ccccCCeEeCCCcccccccccCCeEEEE
Confidence 7889999997 2 22 2388874
No 396
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=94.65 E-value=0.013 Score=41.76 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=48.7
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCC----CCCCCChhhHHHHHHHHhcCCceeeeccCCCCCc-eeccHhhhHhhc
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMP----SSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRL-YGLAHVAKYFVL 90 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~----~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~-y~lt~~s~~l~~ 90 (233)
+..|...|... ++.|..|||+.++ + +...+.++|+-|...|++++...+ .... +.+|+.+..+..
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~~~~-rr~~~~~lT~~g~~~~~ 81 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRKKDN-KIFQYYSLVEESDIKYK 81 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEEEET-TEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEEecC-CeEEEEEecCHHHHHHH
Confidence 44566677665 5899999999999 6 799999999999999999986421 1112 357777776553
No 397
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=94.59 E-value=0.089 Score=44.88 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=41.3
Q ss_pred cceEEEecCCccHHHHHHHHHcCCCcEEEeechH-HHhhcc---CCCCceEEecCcCC
Q 039903 169 IKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSH-VIQDSS---SYSGVKHIGGIMLE 222 (233)
Q Consensus 169 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~~~a~---~~~ri~~~~gD~f~ 222 (233)
..+||+||.|.|.++..|+++...-+.+++++.. -++..+ ..++++.+.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 4789999999999999999975445688887653 222221 34799999999975
No 398
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=94.54 E-value=0.056 Score=39.05 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=38.0
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCC----CceeccHhhhH
Q 039903 33 KISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQ----RLYGLAHVAKY 87 (233)
Q Consensus 33 ~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~----~~y~lt~~s~~ 87 (233)
..|..+||+.+++ ++..+.+.++.|...|++++....+++ +.|.++|+-..
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~k 105 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEK 105 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHH
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHH
Confidence 3799999999999 999999999999999999985321111 35666665443
No 399
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=94.54 E-value=0.023 Score=39.33 Aligned_cols=51 Identities=25% Similarity=0.271 Sum_probs=41.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeec
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTS 71 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~ 71 (233)
+..|...|.+. ++.|..||++.++..++.+...+.++|+-|+..|++++..
T Consensus 37 e~~VL~~L~~~---~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL---GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH---SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 45578888775 5899999999998521225789999999999999999863
No 400
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=94.53 E-value=0.022 Score=43.39 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=51.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|+..|...++.++.|..+||+.+++ +...+.++++.|...|++++..... ..-.+.+|+.|..+...
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 142 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTH 142 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 4457777777641013999999999999 9999999999999999999853210 12257889888876643
No 401
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=94.51 E-value=0.012 Score=47.39 Aligned_cols=70 Identities=7% Similarity=0.149 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCC-----CCceeccH
Q 039903 9 LPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDD-----QRLYGLAH 83 (233)
Q Consensus 9 ~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~-----~~~y~lt~ 83 (233)
...+|..-.++.|+..|.. +|.|..|||+.+++ +...+.+.|+.|...|++......+. .-.|++|+
T Consensus 5 ilkaL~~~~R~~IL~~L~~----g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~ 76 (232)
T 2qlz_A 5 LFYILGNKVRRDLLSHLTC----MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISI 76 (232)
T ss_dssp HHHHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECC
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEcc
Confidence 3456666778889999986 69999999999999 99999999999999999998221111 22477777
Q ss_pred hhh
Q 039903 84 VAK 86 (233)
Q Consensus 84 ~s~ 86 (233)
.+.
T Consensus 77 ~~~ 79 (232)
T 2qlz_A 77 AKS 79 (232)
T ss_dssp CEE
T ss_pred chh
Confidence 554
No 402
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=94.35 E-value=0.045 Score=40.20 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=41.9
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+..|.+.|... ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 6 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 355688888876 58999999999999 999999999999999999864
No 403
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=94.32 E-value=0.083 Score=45.59 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=43.8
Q ss_pred cceEEEecCCccHHHHHHHHH-----------------cCCCcEEEeech-----------HHH-hh-----ccCCCC--
Q 039903 169 IKQLVDVGGGLGVNVNIIISN-----------------YLHIKGVNFDLS-----------HVI-QD-----SSSYSG-- 212 (233)
Q Consensus 169 ~~~vvDvGGG~G~~~~~l~~~-----------------~P~l~~~v~Dlp-----------~v~-~~-----a~~~~r-- 212 (233)
.-+|+|+||++|..+..++.. .|.+++..-||| +.. +. ....+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 678999999999988777666 578888999999 211 11 111111
Q ss_pred ceEEecCcCC-CCCCC--CEEE
Q 039903 213 VKHIGGIMLE-RIPKG--DAIL 231 (233)
Q Consensus 213 i~~~~gD~f~-~~P~~--D~~~ 231 (233)
+.-++|.|+. -+|.. |+++
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~ 154 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLH 154 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEE
T ss_pred EEecchhhhhccCCCCceEEEE
Confidence 5567899998 78875 7764
No 404
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=94.29 E-value=0.023 Score=51.33 Aligned_cols=63 Identities=10% Similarity=-0.066 Sum_probs=45.0
Q ss_pred ceEEEecCCccHHHHHHHHHcC---------------CCcEEEeech-HHHhhccCC-------CCceEEecCcCC-C-C
Q 039903 170 KQLVDVGGGLGVNVNIIISNYL---------------HIKGVNFDLS-HVIQDSSSY-------SGVKHIGGIMLE-R-I 224 (233)
Q Consensus 170 ~~vvDvGGG~G~~~~~l~~~~P---------------~l~~~v~Dlp-~v~~~a~~~-------~ri~~~~gD~f~-~-~ 224 (233)
.+|+|.+||+|.++.++.+..+ +.++..+|+. .++..|+.+ .+|.+..+|.+. + .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999988765432 5678999984 566666542 345558899987 3 3
Q ss_pred CC-C-CEEEe
Q 039903 225 PK-G-DAILI 232 (233)
Q Consensus 225 P~-~-D~~~l 232 (233)
+. . |+|+.
T Consensus 326 ~~~~fD~Iv~ 335 (544)
T 3khk_A 326 PDLRADFVMT 335 (544)
T ss_dssp TTCCEEEEEE
T ss_pred ccccccEEEE
Confidence 33 2 88874
No 405
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=94.25 E-value=0.052 Score=39.84 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=49.1
Q ss_pred HHHhhChhHHHHhcCCCCCCCHHHHHHhCCCC-CCCChhhHHHHHHHHhcCCceeeeccCCCCCceecc
Q 039903 15 AASELGVFEIIAKAGPTAKISAVEIAAQMPSS-NPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLA 82 (233)
Q Consensus 15 ~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~-~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt 82 (233)
+.-+.-|++.|...+ ++.|++||.+.+.-. +..+..-++|.|+.|+..|++++...+++..+|.+.
T Consensus 13 T~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 345677899998764 689999999988311 122889999999999999999987543234567654
No 406
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.25 E-value=0.048 Score=40.32 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=41.9
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+..|...|... ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456788888876 58999999999999 999999999999999999864
No 407
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=94.17 E-value=0.031 Score=41.20 Aligned_cols=56 Identities=9% Similarity=0.107 Sum_probs=45.4
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
++.|..+||+.+++ +...+.++++-|...|++++..... ..-...+|+.|+.+...
T Consensus 50 ~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 107 (147)
T 4b8x_A 50 GELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEA 107 (147)
T ss_dssp GEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHH
Confidence 57999999999999 9999999999999999999875421 11247789998877643
No 408
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=94.07 E-value=0.15 Score=36.24 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=58.3
Q ss_pred HHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhC------CCCCCCChhhHHHHHHHHhcCCceeeeccC---C-CCCce
Q 039903 10 PAAMQAASELGVFEIIAKAGPTAKISAVEIAAQM------PSSNPNAAVMLDRILRLLVTHRVLRCTSAG---D-DQRLY 79 (233)
Q Consensus 10 s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~------~~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~-~~~~y 79 (233)
++.++-.+++=|.-.|.. +|.+--||++.+ ++ ++..++..|+-|...|+++..... + ....|
T Consensus 5 ~~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y 76 (117)
T 4esf_A 5 TEMLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFY 76 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEE
T ss_pred HHHHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEE
Confidence 456666677778888887 699999999997 67 999999999999999999976321 0 12369
Q ss_pred eccHhhhHhhcC
Q 039903 80 GLAHVAKYFVLN 91 (233)
Q Consensus 80 ~lt~~s~~l~~~ 91 (233)
++|+.|+..+..
T Consensus 77 ~LT~~G~~~l~~ 88 (117)
T 4esf_A 77 SLNEAGRQELEL 88 (117)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 999999876644
No 409
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=94.03 E-value=0.044 Score=43.65 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=52.6
Q ss_pred hhChhHHHHhcCC---CCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGP---TAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~---~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
++.+|..|...+. .++.|..++|+++++ ++..+.+.++.|...|+|++.... ....+.+|+.|+.+...
T Consensus 9 ~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~-R~~~v~LT~~G~~l~~~ 80 (230)
T 3cta_A 9 YYRAIKKIKEAAEASNRAYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTK-RGQILNITEKGLDVLYT 80 (230)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcC-CeEEEEECHHHHHHHHH
Confidence 4455666654320 136889999999999 999999999999999999985211 15678999999887644
No 410
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=94.02 E-value=0.056 Score=40.54 Aligned_cols=47 Identities=13% Similarity=0.315 Sum_probs=42.0
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+..|.+.|... ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEeee
Confidence 456788888886 58999999999999 999999999999999999874
No 411
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=93.99 E-value=0.041 Score=40.62 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=41.9
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.++.|...|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+.
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence 456788888875 58999999999999 999999999999999999873
No 412
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=93.96 E-value=0.12 Score=36.66 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=55.9
Q ss_pred HHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCC--------CCCCCCh-hhHHHHHHHHhcCCceeeeccC--C-CCCce
Q 039903 12 AMQAASELGVFEIIAKAGPTAKISAVEIAAQMP--------SSNPNAA-VMLDRILRLLVTHRVLRCTSAG--D-DQRLY 79 (233)
Q Consensus 12 ~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~--------~~~~~~~-~~l~rlL~~L~~~gll~~~~~~--~-~~~~y 79 (233)
.+....++-|...|.. +|.+..||++.++ + ++ ..+.+.|+-|...|+++..... + ..-.|
T Consensus 9 ~~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y 80 (118)
T 2esh_A 9 FRGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIY 80 (118)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEE
T ss_pred cccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEE
Confidence 3455567778888877 5899999999983 6 88 9999999999999999876421 1 12368
Q ss_pred eccHhhhHhhcC
Q 039903 80 GLAHVAKYFVLN 91 (233)
Q Consensus 80 ~lt~~s~~l~~~ 91 (233)
++|+.|..+...
T Consensus 81 ~LT~~G~~~l~~ 92 (118)
T 2esh_A 81 RITPQGKLYLRE 92 (118)
T ss_dssp EECHHHHHHHHH
T ss_pred EEChHHHHHHHH
Confidence 999999876644
No 413
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=93.94 E-value=0.072 Score=39.60 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=47.2
Q ss_pred HHhhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 16 ASELGVFEIIAKAGPTAKISAVEIAAQM-----PSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 16 a~~lglfd~L~~~~~~~~~t~~elA~~~-----~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
.-+.-|++.|...+ ++.|++||.+.+ ++ +..-++|.|+.|+..|++.+...+++..+|..
T Consensus 27 ~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 27 KQREEVVSVLYRSG--THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 34556999998764 689999999998 56 89999999999999999998754322345654
No 414
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=93.90 E-value=0.024 Score=37.36 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=41.2
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeec
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTS 71 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~ 71 (233)
.+..|.+.|... ++.|..||++.++..++.+...+.++|+.|...|++++..
T Consensus 10 ~e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWKH---SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHTS---SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 456677888764 5899999999997311117889999999999999999864
No 415
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=93.90 E-value=0.045 Score=49.47 Aligned_cols=65 Identities=15% Similarity=-0.003 Sum_probs=49.2
Q ss_pred CcceEEEecCCccHHHHHHHHHc---CCCcEEEeech-HHHhhccCC--------CCceEEecCcCC-CCC---C--CCE
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNY---LHIKGVNFDLS-HVIQDSSSY--------SGVKHIGGIMLE-RIP---K--GDA 229 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~---P~l~~~v~Dlp-~v~~~a~~~--------~ri~~~~gD~f~-~~P---~--~D~ 229 (233)
...+|+|.+||+|.++.++.+.. +..++.++|+. .++..|+.+ +++.+..+|.+. .+| . .|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45699999999999999998874 46778999985 466666542 467899999997 333 2 388
Q ss_pred EEe
Q 039903 230 ILI 232 (233)
Q Consensus 230 ~~l 232 (233)
|+.
T Consensus 301 Iva 303 (542)
T 3lkd_A 301 VLM 303 (542)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 416
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=93.84 E-value=0.064 Score=39.62 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=42.1
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+..|.+.|... ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456788888886 58999999999999 999999999999999999864
No 417
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=93.77 E-value=0.053 Score=40.04 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=42.5
Q ss_pred hhHHHHhcC--CCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC-CCCceeccHhhhHhhcC
Q 039903 21 VFEIIAKAG--PTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD-DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 21 lfd~L~~~~--~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~-~~~~y~lt~~s~~l~~~ 91 (233)
+...|...+ ..+++|..|||+.+++ ++..+.++++.|...|+++....++ ..-...+|+.|+.+...
T Consensus 38 vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~ 107 (148)
T 4fx0_A 38 TLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQK 107 (148)
T ss_dssp HHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHH
Confidence 445555432 1246899999999999 9999999999999999996542211 11256788888876644
No 418
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=93.70 E-value=0.073 Score=45.50 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=42.3
Q ss_pred cCcceEEEecCCccHHHHH--------HHHH--------cCCCcEEEeechHH----H-hhccC---CCC---ceEEecC
Q 039903 167 EQIKQLVDVGGGLGVNVNI--------IISN--------YLHIKGVNFDLSHV----I-QDSSS---YSG---VKHIGGI 219 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~--------l~~~--------~P~l~~~v~Dlp~v----~-~~a~~---~~r---i~~~~gD 219 (233)
++.-+|+|+||++|..+.. +.++ .|.+++..-|||.. + ..... ..+ +.-++|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 4567899999999975543 3332 57788888899942 2 11111 012 5667899
Q ss_pred cCC-CCCCC--CEEE
Q 039903 220 MLE-RIPKG--DAIL 231 (233)
Q Consensus 220 ~f~-~~P~~--D~~~ 231 (233)
|+. .+|.. |+++
T Consensus 130 Fy~rlfp~~S~d~v~ 144 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIH 144 (359)
T ss_dssp SSSCCSCTTCBSCEE
T ss_pred hhhccCCCCceEEEE
Confidence 998 78875 7664
No 419
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=93.70 E-value=0.088 Score=49.65 Aligned_cols=67 Identities=7% Similarity=0.000 Sum_probs=46.5
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcC---CCcEEEeech-HHHhhc--cC--------C--CCceEEecCcCCC--CCC-
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYL---HIKGVNFDLS-HVIQDS--SS--------Y--SGVKHIGGIMLER--IPK- 226 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P---~l~~~v~Dlp-~v~~~a--~~--------~--~ri~~~~gD~f~~--~P~- 226 (233)
+....+|+|.|||+|.++.+++++.+ ..++..+|+. .+++.| +. + +.+.+...|++.+ .+.
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence 34567999999999999999999887 3578999984 466655 21 1 2345666777762 222
Q ss_pred -CCEEEe
Q 039903 227 -GDAILI 232 (233)
Q Consensus 227 -~D~~~l 232 (233)
.|+|+.
T Consensus 399 kFDVVIg 405 (878)
T 3s1s_A 399 NVSVVVM 405 (878)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 288764
No 420
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=93.52 E-value=0.057 Score=38.43 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCC------CCCCCChhhHHHHHHHHhcCCceeeecc-C--C-CCC
Q 039903 8 VLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMP------SSNPNAAVMLDRILRLLVTHRVLRCTSA-G--D-DQR 77 (233)
Q Consensus 8 ~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~------~~~~~~~~~l~rlL~~L~~~gll~~~~~-~--~-~~~ 77 (233)
+.++.+.-..++-|...|.. +|.+--||++.++ + ++..+++.|+-|...|+++.... . + ...
T Consensus 6 ~~~~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk 77 (117)
T 3elk_A 6 TRERILHGLITLYILKELVK----RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLT 77 (117)
T ss_dssp -CCHHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEE
T ss_pred HHHHHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCce
Confidence 34566677778888889987 6899999999887 7 88999999999999999997532 1 0 123
Q ss_pred ceeccHhhhHhhcC
Q 039903 78 LYGLAHVAKYFVLN 91 (233)
Q Consensus 78 ~y~lt~~s~~l~~~ 91 (233)
.|++|+.|+..+..
T Consensus 78 ~Y~lT~~G~~~l~~ 91 (117)
T 3elk_A 78 VYHITDAGKKFLCD 91 (117)
T ss_dssp EEEECHHHHHHHHH
T ss_pred EEEECHHHHHHHHH
Confidence 79999999976644
No 421
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=93.51 E-value=0.078 Score=41.18 Aligned_cols=54 Identities=4% Similarity=0.143 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 9 LPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 9 ~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
...++....+..|...|.+ ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 13 ~~k~l~d~~~~~IL~~L~~----~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 13 VIKVMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3455566678889999984 58999999999999 999999999999999999875
No 422
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=93.49 E-value=0.078 Score=40.30 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=42.0
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+..|.+.|... ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKK----PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 456788889886 58999999999999 999999999999999999863
No 423
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=93.47 E-value=0.17 Score=35.85 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhC--------CCCCCCChhhHHHHHHHHhcCCceeeecc---CC-CC
Q 039903 9 LPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQM--------PSSNPNAAVMLDRILRLLVTHRVLRCTSA---GD-DQ 76 (233)
Q Consensus 9 ~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~--------~~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~-~~ 76 (233)
.++.++-..++=|...|.+ +|.+--||++.+ ++ ++..+++.|+-|...|+++.... ++ ..
T Consensus 5 ~~~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~r 76 (116)
T 3f8b_A 5 PKEMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRR 76 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCE
T ss_pred HHHHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCc
Confidence 4566677778888888887 689999999887 57 99999999999999999997531 11 12
Q ss_pred CceeccHhhhHhhcC
Q 039903 77 RLYGLAHVAKYFVLN 91 (233)
Q Consensus 77 ~~y~lt~~s~~l~~~ 91 (233)
..|++|+.|+..+..
T Consensus 77 k~Y~LT~~G~~~l~~ 91 (116)
T 3f8b_A 77 KYYRLTEIGHENMRL 91 (116)
T ss_dssp EEEEECHHHHHHHHH
T ss_pred eEEEECHHHHHHHHH
Confidence 369999999876644
No 424
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=93.33 E-value=0.055 Score=40.05 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=41.9
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+..|.+.|... ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 456788888876 58999999999999 999999999999999999864
No 425
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=93.32 E-value=0.065 Score=39.66 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=41.9
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+..|.+.|.+. ++.|..|||+++|+ ++..+.+.++.|...|++...
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcceE
Confidence 355688888886 58999999999999 999999999999999999874
No 426
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=93.30 E-value=0.063 Score=44.17 Aligned_cols=43 Identities=21% Similarity=0.117 Sum_probs=33.2
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS 201 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp 201 (233)
++.+.+. +....+|||+|||.|.++...+++.|-.+++.+|+-
T Consensus 81 ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG 123 (282)
T 3gcz_A 81 WMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLG 123 (282)
T ss_dssp HHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred HHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEec
Confidence 4445553 666789999999999999999987776666667763
No 427
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=93.28 E-value=0.081 Score=42.13 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=42.7
Q ss_pred CHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhc
Q 039903 35 SAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVL 90 (233)
Q Consensus 35 t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~ 90 (233)
+..+||+.+++ +...+.++++-|...|++++. .+..+.+|+.+..+..
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~----~~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA----GDRHLELTEKGRALAI 73 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----TTSCEEECHHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe----CCccEEECHHHHHHHH
Confidence 44999999999 999999999999999999997 4578999999987654
No 428
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=93.26 E-value=0.074 Score=40.45 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=42.3
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+..|.+.|... +..|..|||+++|+ ++..+.+.++.|...|++...
T Consensus 28 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 466788899886 58999999999999 999999999999999999863
No 429
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.24 E-value=0.075 Score=36.36 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=33.6
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
++.|..|||+.+++ +...+.|.|+.|...|++++.
T Consensus 35 ~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 58999999999999 999999999999999999986
No 430
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=93.22 E-value=0.16 Score=35.96 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhC------CCCCCCChhhHHHHHHHHhcCCceeeeccCC----CCCc
Q 039903 9 LPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQM------PSSNPNAAVMLDRILRLLVTHRVLRCTSAGD----DQRL 78 (233)
Q Consensus 9 ~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~------~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~----~~~~ 78 (233)
.++.++-..++=|...|.+ +|.+--||++.+ ++ ++..++..|+-|...|+++...... ....
T Consensus 6 ~~~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~ 77 (116)
T 3hhh_A 6 QTELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKF 77 (116)
T ss_dssp HHHHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEE
T ss_pred HHHHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceE
Confidence 3566666677778888887 689999999997 57 9999999999999999998753210 1236
Q ss_pred eeccHhhhHhhcC
Q 039903 79 YGLAHVAKYFVLN 91 (233)
Q Consensus 79 y~lt~~s~~l~~~ 91 (233)
|++|+.|+..+..
T Consensus 78 Y~lT~~G~~~l~~ 90 (116)
T 3hhh_A 78 YRLTSSGEAELAD 90 (116)
T ss_dssp EEECHHHHHHHHH
T ss_pred EEECHHHHHHHHH
Confidence 9999999876644
No 431
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=93.11 E-value=0.038 Score=45.05 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=26.9
Q ss_pred CcceEEEecCCccHHHHHHHHH-------cCC-----CcEEEeec
Q 039903 168 QIKQLVDVGGGLGVNVNIIISN-------YLH-----IKGVNFDL 200 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~-------~P~-----l~~~v~Dl 200 (233)
+..+|++||.|+|..+..+++. +|+ ++++.+|.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~ 104 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 104 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence 4579999999999988887665 684 68888886
No 432
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=93.06 E-value=0.094 Score=35.60 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=40.8
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
++.|+..|.+.+. .+++..|||+++++ +..-+.++|+.|...|++.+.
T Consensus 22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCT-TCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4557788887421 37999999999999 999999999999999999954
No 433
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=92.93 E-value=0.069 Score=38.83 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=40.5
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
+..|...|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+.
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEecc
Confidence 45677888775 58999999999999 999999999999999999863
No 434
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=92.92 E-value=0.058 Score=37.72 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=51.5
Q ss_pred HHHHhhChhHHHHhcCCCCCCCHHHHHHh----CCCCCCCChhhHHHHHHHHhcCCceeeeccC--C-CCCceeccHhhh
Q 039903 14 QAASELGVFEIIAKAGPTAKISAVEIAAQ----MPSSNPNAAVMLDRILRLLVTHRVLRCTSAG--D-DQRLYGLAHVAK 86 (233)
Q Consensus 14 ~~a~~lglfd~L~~~~~~~~~t~~elA~~----~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~-~~~~y~lt~~s~ 86 (233)
.-..++-|...|.. +|.+-.+|++. +++ ++..+.++|+-|...|+++..... + ....|++|+.|+
T Consensus 7 ~g~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~ 78 (108)
T 3l7w_A 7 ALLIEYLILAIVSK----HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGE 78 (108)
T ss_dssp HHHHHHHHHHHHHH----SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHc----CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHH
Confidence 34455666777776 57887777777 578 999999999999999999976321 0 012599999998
Q ss_pred HhhcC
Q 039903 87 YFVLN 91 (233)
Q Consensus 87 ~l~~~ 91 (233)
.....
T Consensus 79 ~~l~~ 83 (108)
T 3l7w_A 79 KHLVY 83 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 435
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=92.81 E-value=0.083 Score=39.66 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=42.0
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+..|.+.|.+. +++|..+||+++|+ ++..+.+-++.|...|++...
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeec
Confidence 456788889886 59999999999999 999999999999999999863
No 436
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=92.76 E-value=0.12 Score=40.37 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=43.2
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhh
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFV 89 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~ 89 (233)
+|++..+||+.+++ ++..++..++.|...|+++.. . +...+|+.|+.++
T Consensus 29 ~~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~----~-~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK----Q-RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe----C-CCeEECHHHHHHH
Confidence 48999999999999 999999999999999999996 4 7889999997554
No 437
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=92.73 E-value=0.17 Score=40.20 Aligned_cols=51 Identities=6% Similarity=0.110 Sum_probs=44.0
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 33 KISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 33 ~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
+.+..+||+.+++ ++..+.++++-|...|++++. .+..+.+|+.|+.+...
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~----~~~~v~LT~~G~~~~~~ 74 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVVA----SDRSLQMTPTGRTLATA 74 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----TTSBEEECHHHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe----CCCCeEECHHHHHHHHH
Confidence 3456999999999 999999999999999999996 46779999999876543
No 438
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=92.72 E-value=0.14 Score=37.38 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=40.6
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCC----CceeccHhhhHh
Q 039903 33 KISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQ----RLYGLAHVAKYF 88 (233)
Q Consensus 33 ~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~----~~y~lt~~s~~l 88 (233)
..|.++||+.+++ ++..+.++++.|...|+++.....+++ ..|.++|+-..|
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ekL 106 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKL 106 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHHHH
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHHHH
Confidence 5799999999999 999999999999999999984221112 467777755443
No 439
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=92.65 E-value=0.12 Score=40.13 Aligned_cols=41 Identities=22% Similarity=0.061 Sum_probs=35.5
Q ss_pred HHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 24 IIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 24 ~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+.+.| .|.|..|||+.+|+ +...+.+.|+.|...|++.+.
T Consensus 17 ~~~~~g--~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 17 FIEKNG--YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHS--SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHhC--CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 344444 48999999999999 888999999999999999985
No 440
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=92.61 E-value=0.13 Score=41.69 Aligned_cols=68 Identities=10% Similarity=0.072 Sum_probs=51.9
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhcC
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~~ 91 (233)
..|...|...+. ++.|..|||+.+++ ++..+.++++-|...|++++..... ..-...+|+.|..+...
T Consensus 161 ~~vL~~L~~~~~-~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~ 230 (250)
T 1p4x_A 161 FTILAIITSQNK-NIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQ 230 (250)
T ss_dssp HHHHHHHHTTTT-CCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHH
Confidence 346666766531 25999999999999 9999999999999999999875431 12256789988876643
No 441
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=92.57 E-value=0.15 Score=39.26 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=47.0
Q ss_pred HHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCc-eeeeccCCCCCceeccH
Q 039903 15 AASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRV-LRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 15 ~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gl-l~~~~~~~~~~~y~lt~ 83 (233)
.-....|.+.|.+.+ +++|..|||+++++ +.+.++|=++.|...|+ +... .+.|.+++
T Consensus 20 ~~R~~~Il~~L~~~~--~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~-----~~Gy~l~~ 78 (187)
T 1j5y_A 20 QERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT-----PRGYVLAG 78 (187)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE-----TTEEECCT
T ss_pred HHHHHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE-----CCEEEECC
Confidence 345667899998653 47999999999999 99999999999999999 7653 35576664
No 442
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=92.34 E-value=0.12 Score=31.52 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=41.4
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceee
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRC 69 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~ 69 (233)
+-.|.+.|..+| |=+.++.+|++.|+ +.+.+..+|+-|...|++.-
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 445788999987 78899999999999 99999999999999999875
No 443
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=92.30 E-value=0.18 Score=41.79 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=48.1
Q ss_pred HHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhh----ccCC--CCceEEec-CcCCCCCC-CCE
Q 039903 158 RIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQD----SSSY--SGVKHIGG-IMLERIPK-GDA 229 (233)
Q Consensus 158 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~----a~~~--~ri~~~~g-D~f~~~P~-~D~ 229 (233)
.+.+.+. +.....+||+||+.|.++.-.+....--++..+|+-..-.. .+.. .-|.++.+ |++.--|. .|+
T Consensus 85 ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D~ 163 (321)
T 3lkz_A 85 WLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCDT 163 (321)
T ss_dssp HHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCSE
T ss_pred HHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCCE
Confidence 3444444 66667999999999999997777766557888997533111 0111 34888988 97762222 577
Q ss_pred EE
Q 039903 230 IL 231 (233)
Q Consensus 230 ~~ 231 (233)
++
T Consensus 164 iv 165 (321)
T 3lkz_A 164 LL 165 (321)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 444
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=92.10 E-value=0.12 Score=38.22 Aligned_cols=70 Identities=7% Similarity=0.097 Sum_probs=53.4
Q ss_pred HHHHhhChhHHHHhcCCCCCCCHHHHHHhC--------CCCCCCChhhHHHHHHHHhcCCceeeeccC---C-CCCceec
Q 039903 14 QAASELGVFEIIAKAGPTAKISAVEIAAQM--------PSSNPNAAVMLDRILRLLVTHRVLRCTSAG---D-DQRLYGL 81 (233)
Q Consensus 14 ~~a~~lglfd~L~~~~~~~~~t~~elA~~~--------~~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~-~~~~y~l 81 (233)
..-.++-|...|.. +|.+..||++.+ ++ ++..+.+.|+-|...|+++..... + ..-.|++
T Consensus 39 ~g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~L 110 (145)
T 1xma_A 39 RGYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRI 110 (145)
T ss_dssp GGTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEE
T ss_pred cCcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEE
Confidence 33456667777876 589999998887 57 999999999999999999875321 0 1246999
Q ss_pred cHhhhHhhcC
Q 039903 82 AHVAKYFVLN 91 (233)
Q Consensus 82 t~~s~~l~~~ 91 (233)
|+.|+.++..
T Consensus 111 T~~G~~~l~~ 120 (145)
T 1xma_A 111 TPEGIKYYKQ 120 (145)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999876643
No 445
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=92.01 E-value=0.15 Score=37.16 Aligned_cols=60 Identities=10% Similarity=0.222 Sum_probs=45.8
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQM-----PSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~-----~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
-+.-|++.|...+ +++.|++||.+.+ ++ +..-++|-|+.|+..|++.+...+++..+|.+
T Consensus 19 qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 19 PRVKILQMLDSAE-QRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp HHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 3456888887641 1489999999998 56 89999999999999999998754223346765
No 446
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=91.72 E-value=0.3 Score=31.74 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=32.7
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
+..|+.+||+++|+ +...+.|.|-.|...|.|...
T Consensus 28 ~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 28 DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 45999999999999 999999999999999999886
No 447
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=91.64 E-value=0.43 Score=29.14 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=42.4
Q ss_pred HHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 23 EIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 23 d~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
..|..-+ .++|+.|+|+..+. +.+..+.-|+.|.+.|-+.+. ..+|++.|
T Consensus 10 all~s~~--QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR-----sSRYrlkp 59 (68)
T 3i71_A 10 ALLTSVR--QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR-----SSRYRLKP 59 (68)
T ss_dssp HHHHHCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----CCEEEECC
T ss_pred HHHHHHh--ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh-----ccccccCc
Confidence 3444433 58999999999999 999999999999999999996 78898876
No 448
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=91.60 E-value=0.15 Score=41.82 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=27.1
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL 200 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl 200 (233)
++...+|||+|||.|.++..++++.+--+++.+|+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dV 106 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTL 106 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEE
Confidence 56667999999999999999888766545444444
No 449
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=91.38 E-value=0.23 Score=41.06 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=32.2
Q ss_pred CcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccC
Q 039903 168 QIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSS 209 (233)
Q Consensus 168 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~ 209 (233)
....|+|++||+|..+.++++. +.+++.+|+. ..++.|++
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 4578999999999999998876 4689999995 46666654
No 450
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=91.32 E-value=0.15 Score=42.01 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=46.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHc-----CCCcEEEeec----hH-----------------------HHhhccC-----
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNY-----LHIKGVNFDL----SH-----------------------VIQDSSS----- 209 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~-----P~l~~~v~Dl----p~-----------------------v~~~a~~----- 209 (233)
...+.||.||...|..++.+++.. |+-+++.+|. |+ .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346899999999999888877654 5788999983 21 1122222
Q ss_pred ---CCCceEEecCcCCCCCC---C--CEEEe
Q 039903 210 ---YSGVKHIGGIMLERIPK---G--DAILI 232 (233)
Q Consensus 210 ---~~ri~~~~gD~f~~~P~---~--D~~~l 232 (233)
.++|+++.||+.+.+|. + |++++
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfI 215 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRM 215 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEE
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEE
Confidence 17899999999885543 2 66664
No 451
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=91.23 E-value=0.31 Score=37.08 Aligned_cols=65 Identities=9% Similarity=0.269 Sum_probs=49.5
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhC--------CCCCCCChhhHHHHHHHHhcCCceeeeccCC----CCCceeccHh
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQM--------PSSNPNAAVMLDRILRLLVTHRVLRCTSAGD----DQRLYGLAHV 84 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~--------~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~----~~~~y~lt~~ 84 (233)
+++-|...|.. +|.+.-||++.+ ++ ++..+++.|+-|...|+++...... ....|++|+.
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~ 74 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQA 74 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHH
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChH
Confidence 35557777876 599999999998 56 8999999999999999999653210 1246999999
Q ss_pred hhHhh
Q 039903 85 AKYFV 89 (233)
Q Consensus 85 s~~l~ 89 (233)
|+...
T Consensus 75 G~~~l 79 (179)
T 1yg2_A 75 GRSAL 79 (179)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97533
No 452
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=90.97 E-value=0.17 Score=36.72 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=41.6
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeec
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTS 71 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~ 71 (233)
.+..|...|.... ++.|..||++.++..++.+...+.++|+-|...|++++..
T Consensus 10 ~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 10 LERAVMDHLWSRT--EPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 4566777887631 5899999999998211118999999999999999999864
No 453
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=90.83 E-value=0.18 Score=44.28 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=51.1
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC--CCCceeccHhhhHhhc
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD--DQRLYGLAHVAKYFVL 90 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~lt~~s~~l~~ 90 (233)
..|+..|.+.+ ++++|..|||+.+++ +...+.|+++-|...|++++.+... ..-...+|+.++.+..
T Consensus 407 ~~vl~~l~~~~-~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~ 475 (487)
T 1hsj_A 407 IYILNHILRSE-SNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQ 475 (487)
T ss_dssp HHHHHHHHTCS-CSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHH
T ss_pred HHHHHHHHhCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHH
Confidence 34666676641 147999999999999 9999999999999999999875431 2235678888877653
No 454
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=90.78 E-value=0.14 Score=43.84 Aligned_cols=72 Identities=13% Similarity=0.255 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCC-----CCCceecc
Q 039903 8 VLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGD-----DQRLYGLA 82 (233)
Q Consensus 8 ~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~-----~~~~y~lt 82 (233)
..+++++...+..|++.|. . +++|..|||+.+++ +...+.++++-|...|++.+..... ....|+++
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~ 83 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-K---SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKIS 83 (380)
T ss_dssp ----------CCCSHHHHH-H---SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEEC
T ss_pred cCchhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEc
Confidence 4566777778888999999 7 69999999999999 9999999999999999999863210 12346777
Q ss_pred HhhhH
Q 039903 83 HVAKY 87 (233)
Q Consensus 83 ~~s~~ 87 (233)
+...+
T Consensus 84 ~~~~~ 88 (380)
T 2hoe_A 84 PNCAY 88 (380)
T ss_dssp GGGCE
T ss_pred cCCCe
Confidence 76543
No 455
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=90.38 E-value=0.36 Score=40.26 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=42.4
Q ss_pred cCcceEEEecCCccHHHHHHHHHcC-CCcEEEeechHHHhhccC---------CCCceEEecCcCC
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYL-HIKGVNFDLSHVIQDSSS---------YSGVKHIGGIMLE 222 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~v~~~a~~---------~~ri~~~~gD~f~ 222 (233)
.++..||++|||-=.....+. +| ++++.-+|.|+|++..++ .++..++++|+.+
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d 164 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 164 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence 456789999999888866665 35 488999999999875432 3678999999986
No 456
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=90.26 E-value=0.31 Score=33.66 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=35.0
Q ss_pred HHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhc
Q 039903 15 AASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVT 63 (233)
Q Consensus 15 ~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~ 63 (233)
.+.++||+..|.. |+.|-.|||+.+|+ +...+.|+=|.|-.
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 3567899999988 68999999999999 99999998777654
No 457
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=90.22 E-value=0.11 Score=39.99 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=53.0
Q ss_pred HHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhCC-CCCCCChhhHHHHHHHHhcCCceeeeccCC----CCCceeccHh
Q 039903 10 PAAMQAASELGVFEIIAKAGPTAKISAVEIAAQMP-SSNPNAAVMLDRILRLLVTHRVLRCTSAGD----DQRLYGLAHV 84 (233)
Q Consensus 10 s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~-~~~~~~~~~l~rlL~~L~~~gll~~~~~~~----~~~~y~lt~~ 84 (233)
..+|.-=+++.|+..|.+ ++.|+.|||+.++ + +...+.+.|+.|...|+++...... ....|++++.
T Consensus 17 ~~~La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~ 88 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQ 88 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTT
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccc
Confidence 445555679999999986 6999999999996 8 8889999999999999998543210 1235777665
Q ss_pred hhH
Q 039903 85 AKY 87 (233)
Q Consensus 85 s~~ 87 (233)
+..
T Consensus 89 ~~~ 91 (182)
T 4g6q_A 89 AGD 91 (182)
T ss_dssp TTT
T ss_pred ccc
Confidence 543
No 458
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=90.21 E-value=0.15 Score=34.94 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=41.8
Q ss_pred HHHHHHHHhhChhH-HHHhcCCCCCC-CHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 10 PAAMQAASELGVFE-IIAKAGPTAKI-SAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 10 s~~L~~a~~lglfd-~L~~~~~~~~~-t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
+..++..++..|.+ .+.. | ..+ |..+||+.+++ +...+++-|+.|...|+++..
T Consensus 13 ~~~l~~~i~~~I~~~~l~~-g--~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAP-G--DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCT-T--SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCCC-c--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 44555556666665 3333 2 355 99999999999 999999999999999999986
No 459
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=90.18 E-value=0.89 Score=39.14 Aligned_cols=63 Identities=13% Similarity=0.229 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHhcchhcHHHHHHhcccccCcceEEEecCCccHHHHHHHHH-------cCCCcEEEeechHHHh
Q 039903 138 FRFNGVFNKAMLNHTSIVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISN-------YLHIKGVNFDLSHVIQ 205 (233)
Q Consensus 138 ~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-------~P~l~~~v~Dlp~v~~ 205 (233)
|+....|-+.++.+-.. +..... .+..-+||++|.|+|.++.-+++. +..++..++|....+.
T Consensus 55 peis~~FGe~la~~~~~----~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr 124 (387)
T 1zkd_A 55 PEISQMFGELLGLWSAS----VWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 124 (387)
T ss_dssp HHHCHHHHHHHHHHHHH----HHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred CchHHHHHHHHHHHHHH----HHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence 66666677665543211 112222 344567999999999998887764 2356789999876554
No 460
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=90.15 E-value=0.3 Score=34.48 Aligned_cols=67 Identities=10% Similarity=0.164 Sum_probs=50.3
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCC------CCCCCChhhHHHHHHHHhcCCceeeeccC---C-CCCceeccHhhh
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMP------SSNPNAAVMLDRILRLLVTHRVLRCTSAG---D-DQRLYGLAHVAK 86 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~------~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~-~~~~y~lt~~s~ 86 (233)
+++-|...|.. +|.+--||++.+. + ++..+++.|+-|...|+++..... + ....|++|+.|+
T Consensus 10 l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~ 81 (115)
T 4esb_A 10 LEGCILYIISQ----EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGL 81 (115)
T ss_dssp HHHHHHHHHHH----SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHH
Confidence 34445666776 5899999998885 7 999999999999999999875321 0 113599999998
Q ss_pred HhhcC
Q 039903 87 YFVLN 91 (233)
Q Consensus 87 ~l~~~ 91 (233)
.....
T Consensus 82 ~~l~~ 86 (115)
T 4esb_A 82 EQLEE 86 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 461
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=89.65 E-value=0.18 Score=35.69 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=41.6
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeec
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTS 71 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~ 71 (233)
.+..|...|... ++.|..|||+.++...+.++..+.++|+-|...|++++..
T Consensus 11 ~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWDK---KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 455677778776 5899999999997311127889999999999999999864
No 462
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=89.40 E-value=0.24 Score=36.46 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=45.5
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCC-CCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSS-NPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~-~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
-+.-|++.|... ++.|++||.+.+.-. +..+..-++|-|+.|+..|++.+...+++..+|.+
T Consensus 20 qR~~Il~~l~~~---~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~ 82 (145)
T 3eyy_A 20 QRQLVLEAVDTL---EHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHL 82 (145)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 456688888876 388999999887321 12288899999999999999998753222345654
No 463
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=89.26 E-value=0.33 Score=41.81 Aligned_cols=51 Identities=10% Similarity=0.275 Sum_probs=44.9
Q ss_pred HHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 13 MQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 13 L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
++..-+..|++.|... +++|..|||+.+++ +...+.++++-|...|++.+.
T Consensus 13 ~r~~n~~~il~~l~~~---~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHhHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 4555556689999887 59999999999999 999999999999999999985
No 464
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=89.16 E-value=0.44 Score=35.76 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=44.6
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCC---CCCChhhHHHHHHHHhcCCceeeeccCCCCCceecc
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSS---NPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLA 82 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~---~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt 82 (233)
+.-|++.|...+ ++.|++||.+.+.-. +..+..-++|-|+.|+..|++.+...+++..+|...
T Consensus 35 R~~IL~~L~~~~--~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~ 100 (162)
T 4ets_A 35 REVLLKTLYHSD--THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELA 100 (162)
T ss_dssp HHHHHHHHHSCC--SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEEEC
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEEeC
Confidence 455899998864 699999998876321 122788999999999999999987432223457654
No 465
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=88.98 E-value=0.29 Score=32.00 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=37.4
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 21 VFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 21 lfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
+.+.+...+ ++.+++.++|+.+++. ..++++.++.+|.++|++++.
T Consensus 19 Fi~l~~~~~-~~~i~l~~aa~~L~v~---~kRRiYDI~NVLe~igli~K~ 64 (76)
T 1cf7_A 19 FVSLLQEAK-DGVLDLKLAADTLAVR---QKRRIYDITNVLEGIGLIEKK 64 (76)
T ss_dssp HHHHHHHSS-TTEEEHHHHHHHTTTC---CTHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHhCC-CCcCcHHHHHHHhCCc---cceehhhHHHHHhHhcceeec
Confidence 445555532 3688999999999983 578999999999999999997
No 466
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=88.90 E-value=0.078 Score=44.97 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhc
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVL 90 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~ 90 (233)
+..|...|... +++|..|||+.+++ ++..++|.|+.|...|++++. .....+|+.|+.+..
T Consensus 22 ~~~iL~~l~~~---~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~-----~~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 22 RFQILRNIYWM---QPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS-----KSGMTLTERGLEVYQ 82 (345)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-----ecceEEcHHHHHHHH
Confidence 44677777776 58999999999999 999999999999999999853 233567777765543
No 467
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=88.75 E-value=0.23 Score=36.82 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=44.9
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceec
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQM-----PSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGL 81 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~-----~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~l 81 (233)
-+.-|++.|...+ +++.|++||.+.+ ++ +..-++|.|+.|+..|++.+...+++..+|.+
T Consensus 18 qR~~Il~~L~~~~-~~h~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 18 PRLKILEVLQQPE-CQHISAEELYKKLIDLGEEI----GLATVYRVLNQFDDAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp HHHHHHHHHTSGG-GSSEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 3455888887641 0389999999998 56 89999999999999999998743212345654
No 468
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=88.51 E-value=0.5 Score=29.01 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=30.4
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 21 VFEIIAKAGPTAKISAVEIAAQM-----PSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 21 lfd~L~~~~~~~~~t~~elA~~~-----~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
|...+... ++.|++||++.+ ++ +..-++|-|+ .+|++ +.
T Consensus 10 i~~ll~~~---~~~t~~el~~~l~~~~~~v----s~~Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 10 IREIITSN---EIETQDELVDMLKQDGYKV----TQATVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHHHHS---CCCSHHHHHHHHHHTTCCC----CHHHHHHHHH---HHTCE-EE
T ss_pred HHHHHHcC---CCCCHHHHHHHHHHhCCCc----CHHHHHHHHH---HcCCE-EE
Confidence 33445544 589999999999 99 9999999998 55777 44
No 469
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=87.88 E-value=0.47 Score=39.70 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=45.2
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
+..|.+.|.+. +..|.+|||+.+++ ++..++|-++.|...|+..+.. .+..|++.+
T Consensus 7 ~~~Il~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~---~g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV---PGKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE---TTTEEECSS
T ss_pred HHHHHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe---cCCCcEEee
Confidence 45577888664 58999999999999 9999999999999999986542 344687754
No 470
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=87.80 E-value=0.55 Score=34.64 Aligned_cols=47 Identities=6% Similarity=0.027 Sum_probs=41.5
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeecc
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSA 72 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~ 72 (233)
+-.|.++|. . ||.|..+||+++|+ +....+-.|..|.-.|++.+...
T Consensus 13 k~~ILE~Lk-~---G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~Vk~ 59 (165)
T 2vxz_A 13 LRDILALLA-D---GCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRVAF 59 (165)
T ss_dssp HHHHHHHHT-T---CCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHHHHH-h---CCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEEEE
Confidence 345788888 3 79999999999999 99999999999999999998754
No 471
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=87.79 E-value=0.57 Score=33.21 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=37.5
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 33 KISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 33 ~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
|.++.|||+.+++ ++..+..+|+.|+..|.+.+. ..+.|-++.
T Consensus 20 p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i----~~~~~~~~~ 62 (121)
T 2pjp_A 20 PWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI----VKDRYYRND 62 (121)
T ss_dssp CEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE----ETTEEEEHH
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe----cCCceECHH
Confidence 6799999999999 999999999999999999887 467665544
No 472
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=87.41 E-value=0.35 Score=40.06 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=29.8
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS 201 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp 201 (233)
+.+..++||+||+.|.++.-++++.+-..++.+|+.
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg 114 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLG 114 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEec
Confidence 567799999999999999999987766566667763
No 473
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=87.13 E-value=0.6 Score=42.47 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=52.3
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhc-----CCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVT-----HRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~-----~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
++-|++.|... +.+|..+||+.+++ ++..+++.|+.|+. .|+++.. ++.|.+++.....+..
T Consensus 432 ~~~iL~~l~~~---~~it~~~la~~l~~----s~~~~~~~L~~L~~~~~~~~glie~~-----g~~y~L~~~~~~~~~~ 498 (583)
T 3lmm_A 432 IAIVLYLLFQR---PFITIDVVARGLQS----GKEAARNALEAARQTTVAGAPLIIAH-----DGVWLLGNACREILRK 498 (583)
T ss_dssp HHHHHHHHHHS---SSBCHHHHHHHHTS----CHHHHHHHHHHHHTCEETTEESEEEE-----TTEEEECHHHHHHHTS
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHhhhccccceEEEe-----CCEEEECHHHHHHhcc
Confidence 34578888887 48999999999999 99999999999999 8999996 5889999976655533
No 474
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=86.96 E-value=0.68 Score=37.33 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=50.3
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCC--ceeccHhhhHhhcC
Q 039903 20 GVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQR--LYGLAHVAKYFVLN 91 (233)
Q Consensus 20 glfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~--~y~lt~~s~~l~~~ 91 (233)
.+...|.+.+ .++.|..|||+.+++ +...+.++++-|...|++.+...+.+.. ...+|+.|+.+...
T Consensus 38 ~vL~~L~~~~-~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~ 106 (250)
T 1p4x_A 38 ILLTYLFHQQ-ENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAE 106 (250)
T ss_dssp HHHHHHHSCS-CSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHH
Confidence 3555665531 137899999999999 9999999999999999999876532122 45689988776533
No 475
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=86.89 E-value=0.64 Score=40.35 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=45.4
Q ss_pred HHHHHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 13 MQAASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 13 L~~a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
++..-+..|++.|... +++|..|||+.+++ +...+.++++-|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~---~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK---GPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 4555566789999887 59999999999999 999999999999999999986
No 476
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=86.48 E-value=0.9 Score=37.73 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=33.2
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCcee-ee
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLR-CT 70 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~-~~ 70 (233)
+++|..|||+++++ ++..++|.|..|...|+++ +.
T Consensus 20 ~~~~~~ela~~l~v----S~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 20 QDMTQAQIARELGI----YRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp SCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEEe
Confidence 58999999999999 9999999999999999998 65
No 477
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=85.37 E-value=0.69 Score=36.92 Aligned_cols=51 Identities=4% Similarity=0.090 Sum_probs=42.8
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 21 VFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 21 lfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
|.-.|.. ++.|.++||..+++ +++-+...|+-|...|++++. .+++..+.+
T Consensus 170 l~~~l~~----~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~~----~~~~~~~~~ 220 (232)
T 2qlz_A 170 LHYLLLN----GRATVEELSDRLNL----KEREVREKISEMARFVPVKII----NDNTVVLDE 220 (232)
T ss_dssp HHHHHHS----SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEEE----TTTEEEECH
T ss_pred HHHHHhc----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEEe----cCCeEEecH
Confidence 4444554 69999999999999 999999999999999999876 577776654
No 478
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.31 E-value=0.52 Score=32.14 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=43.0
Q ss_pred HhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 17 SELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 17 ~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
-|.-|+..|.+.|. .+++..||..++++ +..-+.++|+.|...+++...
T Consensus 38 ~E~lVy~~I~~aGn-~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 38 QEKLVYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence 45568888988652 47999999999999 999999999999999999986
No 479
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=85.12 E-value=0.31 Score=36.36 Aligned_cols=51 Identities=8% Similarity=-0.046 Sum_probs=34.9
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeec-hHHHhhccCC--CCceEEecCcCC-CC---CCC--CEEEe
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDL-SHVIQDSSSY--SGVKHIGGIMLE-RI---PKG--DAILI 232 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~---P~~--D~~~l 232 (233)
.....+++|||||. +.+|. +..++.+++. .+++++.+|+.+ +. |.. |+++.
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~ 69 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILS 69 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEE
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEE
Confidence 56678999999996 22665 3466666542 368888888876 44 443 88764
No 480
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=84.91 E-value=1.4 Score=31.44 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHHhcCCceeeeccCC---CCCce
Q 039903 8 VLPAAMQAASELGVFEIIAKAGPTAKISAVEIAAQM-----PSSNPNAAVMLDRILRLLVTHRVLRCTSAGD---DQRLY 79 (233)
Q Consensus 8 ~~s~~L~~a~~lglfd~L~~~~~~~~~t~~elA~~~-----~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~---~~~~y 79 (233)
+.++.++-..++=|...|. . |.+--+|.+.+ ++ ++..++.+|+-|...|+++...... ....|
T Consensus 13 ~~~~l~~g~l~~~IL~lL~-~----p~~GYei~~~l~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y 83 (123)
T 3ri2_A 13 MVLELRRGTLVMLVLSQLR-E----PAYGYALVKSLADHGIPI----EANTLYPLMRRLESQGLLASEWDNGGSKPRKYY 83 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTT-S----CEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEE
T ss_pred HHHHHHhCcHHHHHHHHHc-C----CCCHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeccCCCCCceEE
Confidence 4556677777777888887 3 78888888874 77 9999999999999999998753210 12379
Q ss_pred eccHhhhHhhcC
Q 039903 80 GLAHVAKYFVLN 91 (233)
Q Consensus 80 ~lt~~s~~l~~~ 91 (233)
++|+.|+..+..
T Consensus 84 ~LT~~Gr~~l~~ 95 (123)
T 3ri2_A 84 RTTDEGLRVLRE 95 (123)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 999999876644
No 481
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=84.41 E-value=1.3 Score=28.04 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=39.9
Q ss_pred hhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhh-HHHHHHHHhcCCceeee
Q 039903 18 ELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVM-LDRILRLLVTHRVLRCT 70 (233)
Q Consensus 18 ~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~-l~rlL~~L~~~gll~~~ 70 (233)
+-.|.+.|..+ ||.++-.||+++|+ .... +.+-|-.|...|+|..+
T Consensus 12 ee~I~~fL~~~---Gp~~AL~IAK~LGl----ktAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDN---GPQRALVIAQALGM----RTAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHTTC----CSGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHc---CCchHHHHHHHhCc----chhhhcCHHHHHHHHccCcCCC
Confidence 45688999998 59999999999999 5555 99999999999999765
No 482
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=83.80 E-value=1.8 Score=32.43 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcchhcHHHHHHhcccccCcceEEEecCCccHHHHHHHHHcCCCcEEEeechHHHhhccCCCCceEEecCc
Q 039903 141 NGVFNKAMLNHTSIVTNRIIDSSKGFEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSHVIQDSSSYSGVKHIGGIM 220 (233)
Q Consensus 141 ~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~a~~~~ri~~~~gD~ 220 (233)
.+.|.+-|.+..... ...+.... .-..-|+|+|=|+|-.=-.+.+.+|+-++.|||+.-.+.-...-+.=.++-||+
T Consensus 16 LDsfirRltaQR~~L-~~a~~~v~--~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi 92 (174)
T 3iht_A 16 LDLFIDRMVSQRACL-EHAIAQTA--GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDI 92 (174)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTT--TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhc--CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccH
Confidence 345666665433222 22223322 223679999999999999999999999999999854332222223445667776
Q ss_pred CCCC
Q 039903 221 LERI 224 (233)
Q Consensus 221 f~~~ 224 (233)
.+.+
T Consensus 93 ~~tL 96 (174)
T 3iht_A 93 RETL 96 (174)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 483
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=83.67 E-value=1.2 Score=38.49 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=31.1
Q ss_pred cCcceEEEecCCccHHHHHHH-HHcCC-CcEEEeec-hHHHh
Q 039903 167 EQIKQLVDVGGGLGVNVNIII-SNYLH-IKGVNFDL-SHVIQ 205 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~-~~~P~-l~~~v~Dl-p~v~~ 205 (233)
++..+++|||++.|.++..++ +..|. .+++.|+- |...+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~ 266 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQ 266 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 456899999999999999988 66776 78999984 44443
No 484
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=83.13 E-value=2.3 Score=29.73 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=46.3
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhC-------CCCCCCChhhHHHHHHHHhcCCceeeeccC----C-CCCceeccHhhhHh
Q 039903 21 VFEIIAKAGPTAKISAVEIAAQM-------PSSNPNAAVMLDRILRLLVTHRVLRCTSAG----D-DQRLYGLAHVAKYF 88 (233)
Q Consensus 21 lfd~L~~~~~~~~~t~~elA~~~-------~~~~~~~~~~l~rlL~~L~~~gll~~~~~~----~-~~~~y~lt~~s~~l 88 (233)
|...|.+ +|.+--||.+.+ ++ ++..++..|+-|...|+++..... + ....|++|+.|+..
T Consensus 27 IL~lL~~----~~~~Gyei~~~l~~~~~~~~i----s~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~ 98 (115)
T 2dql_A 27 ILYVLLQ----GESYGTELIQQLETEHPTYRL----SDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQ 98 (115)
T ss_dssp HHHHHTT----SCBCHHHHHHHHHHHCTTEEC----CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHH
T ss_pred HHHHHHh----CCCCHHHHHHHHHHHcCCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHH
Confidence 4555665 588888877766 46 899999999999999999875321 0 11359999999876
Q ss_pred hcC
Q 039903 89 VLN 91 (233)
Q Consensus 89 ~~~ 91 (233)
...
T Consensus 99 l~~ 101 (115)
T 2dql_A 99 AED 101 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 485
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=82.70 E-value=3.2 Score=32.26 Aligned_cols=53 Identities=8% Similarity=0.033 Sum_probs=35.5
Q ss_pred ccCcceEEEecCCccHHHHHHHHHcCCCcEEEeech-HHHhhccC---------CCCceEEecCcC
Q 039903 166 FEQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLS-HVIQDSSS---------YSGVKHIGGIML 221 (233)
Q Consensus 166 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v~~~a~~---------~~ri~~~~gD~f 221 (233)
..+.++|++||+| ..+.-+++ .|+-+++-+|.. +-.+.+++ .++|+++.||..
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~ 90 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIG 90 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCS
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCch
Confidence 4566899999984 44444444 567888888864 34444432 357999999954
No 486
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=82.41 E-value=0.63 Score=39.96 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=44.3
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceecc
Q 039903 19 LGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLA 82 (233)
Q Consensus 19 lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt 82 (233)
..|++.|.. +|.++++|+.++++ +...+...|-.|.-.|++... .+++|+++
T Consensus 331 ~~vl~~l~~----~~~~~D~l~~~~gl----~~~~v~~~L~~LEl~G~v~~~----~Gg~~~~~ 382 (382)
T 3maj_A 331 TRILALLGP----SPVGIDDLIRLSGI----SPAVVRTILLELELAGRLERH----GGSLVSLS 382 (382)
T ss_dssp HHHHHHCCS----SCEEHHHHHHHHCC----CHHHHHHHHHHHHHTTCCEEC----TTSEEEC-
T ss_pred HHHHHhhCC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEeC----CCceEecC
Confidence 347777764 58999999999999 999999999999999999987 67888764
No 487
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=81.78 E-value=2.6 Score=28.77 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=40.2
Q ss_pred CCCHHHHHHhCC--CCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhc
Q 039903 33 KISAVEIAAQMP--SSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVL 90 (233)
Q Consensus 33 ~~t~~elA~~~~--~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~ 90 (233)
.....+|.+..+ + ++..++.+|+-|...|+++... +.....|++|+.|+..+.
T Consensus 28 ~~i~~ei~~~~~~~i----s~GtlYp~L~rLe~~GlI~~~~-~~~rk~Y~iT~~Gr~~l~ 82 (99)
T 2co5_A 28 KRLRSEILKRFDIDI----SDGVLYPLIDSLIDDKILREEE-APDGKVLFLTEKGMKEFE 82 (99)
T ss_dssp GGHHHHHHHHHCCBC----CHHHHHHHHHHHHHTTSEEEEC-CTTSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC----CCCcHHHHHHHHHHCCCEEEee-CCCcEEEEECHHHHHHHH
Confidence 444567777654 5 8999999999999999999863 113457999999986543
No 488
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=81.77 E-value=1.1 Score=30.77 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=31.9
Q ss_pred CC-CHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 33 KI-SAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 33 ~~-t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+ |..+||+.+++ +...+++-|+.|...|+++..
T Consensus 42 ~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 42 GLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp EEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 45 99999999999 999999999999999999986
No 489
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=81.68 E-value=2.5 Score=36.14 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=50.3
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcCCC
Q 039903 21 VFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLNRD 93 (233)
Q Consensus 21 lfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~~~ 93 (233)
+.+.|.+.| -.|..++++.+++ +..-.+|.|+.|+..|+|++...+ .+..|..++.-..|..+..
T Consensus 302 ll~~l~~~p---~~t~~~~~~~~~~----S~~TA~r~L~~L~e~GiL~~~~~g-R~~~y~~~~~l~il~~~~~ 366 (373)
T 3eqx_A 302 LVQVIFEQP---YCRIQNLVESGLA----KRQTASVYLKQLCDIGVLEEVQSG-KEKLFVHPKFVTLMTKDSN 366 (373)
T ss_dssp HHHHHHHCS---EEEHHHHHHTSSS----CHHHHHHHHHHHHHTTSCEEC--C-CSCEEECHHHHHHHHSSCC
T ss_pred HHHHHHHCC---CccHHHHHHHhCc----CHHHHHHHHHHHHHCCcEEEeCCC-CceEeehHHHHHHHhccCc
Confidence 566666642 5789999999999 999999999999999999987432 4567877777777776653
No 490
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=81.53 E-value=2.7 Score=30.08 Aligned_cols=34 Identities=26% Similarity=0.205 Sum_probs=31.8
Q ss_pred CC-CHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 33 KI-SAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 33 ~~-t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+ |..+||+.+|+ +...+++-++.|...|+++..
T Consensus 27 ~LPse~~La~~~gv----Sr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 27 RVPSTNELAAFHRI----NPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp CBCCHHHHHHHTTC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred cCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 55 88999999999 999999999999999999986
No 491
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=81.42 E-value=1.9 Score=30.01 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=31.7
Q ss_pred CC-CHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 33 KI-SAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 33 ~~-t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+ |..+||+.+|+ +..-+++-++.|...|+++..
T Consensus 32 ~lPs~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 32 MIPSIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp EECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 44 88999999999 999999999999999999986
No 492
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=80.39 E-value=3.7 Score=33.00 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=45.9
Q ss_pred HHhhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 16 ASELGVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 16 a~~lglfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
.....|.+.+...|- .|-++.||++.+++ ++..++.+|+.|+..|.+.+. .++.|-++.
T Consensus 141 ~~~~~i~~~~~~~g~-~pp~~~dl~~~l~~----~~~~~~~~l~~l~~~g~lv~l----~~~~~~~~~ 199 (258)
T 1lva_A 141 KLLKDLEDKYRVSRW-QPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI----NDEFYWHRQ 199 (258)
T ss_dssp HHHHHHHHHHHHHTT-SCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES----SSSBEEEHH
T ss_pred HHHHHHHHHHHHCCC-CCCCHHHHHhHhCC----CHHHHHHHHHHHHHCCCEEEe----cCCeEEcHH
Confidence 344456667765432 26689999999999 999999999999999999987 567775544
No 493
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=80.14 E-value=1.8 Score=36.25 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=45.3
Q ss_pred hhChhHHHHhc-CCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccH
Q 039903 18 ELGVFEIIAKA-GPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAH 83 (233)
Q Consensus 18 ~lglfd~L~~~-~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~ 83 (233)
+..|.+.|.++ + .+.|.++||+.+++ +...+.+-++.|...|+..+.. .+..|++.+
T Consensus 5 ~~~iL~~L~~~~g--~~~Sg~eLa~~lgv----Sr~aV~k~i~~L~~~G~~i~~~---~~~GY~L~~ 62 (323)
T 3rkx_A 5 SQDVLQLLYKNKP--NYISGQSIAESLNI----SRTAVKKVIDQLKLEGCKIDSV---NHKGHLLQQ 62 (323)
T ss_dssp HHHHHHHHHHHTT--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEEE---TTTEEEEEE
T ss_pred HHHHHHHHHhCCC--CccCHHHHHHHHCC----CHHHHHHHHHHHHhcCCeEEEe---CCCeEEEec
Confidence 34577888543 2 48999999999999 9999999999999999965532 356788765
No 494
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=79.67 E-value=3.3 Score=27.86 Aligned_cols=50 Identities=2% Similarity=-0.006 Sum_probs=39.9
Q ss_pred CCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 32 AKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 32 ~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
++.++++||+.+++ +++.+.|+++......+-+.. ..+++......|...
T Consensus 18 ~~~~~~~lA~~~~~----S~~~l~r~fk~~~g~s~~~~~------~~~Rl~~A~~lL~~~ 67 (103)
T 3lsg_A 18 SQFTLSVLSEKLDL----SSGYLSIMFKKNFGIPFQDYL------LQKRMEKAKLLLLTT 67 (103)
T ss_dssp TTCCHHHHHHHTTC----CHHHHHHHHHHHHSSCHHHHH------HHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHHHH------HHHHHHHHHHHHHCC
Confidence 48999999999999 999999999998887777663 446666666666543
No 495
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=79.48 E-value=2.7 Score=35.80 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=49.3
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcCC
Q 039903 20 GVFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLNR 92 (233)
Q Consensus 20 glfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~~ 92 (233)
.|.+.|...+ -.+.+++++.+++ +....+|.|+.|+..|++++...+ .+..|...+.-..|..+.
T Consensus 301 ~ll~~l~~~p---~~t~~~~~~~~gv----S~~Ta~r~L~~L~e~GiL~~~~~g-R~~~y~~~~~~~~l~~~~ 365 (373)
T 2qc0_A 301 ELVQVIFEQP---YCRIQNLVESGLA----KRQTASVYLKQLCDIGVLEEVQSG-KEKLFVHPKFVTLMTKDS 365 (373)
T ss_dssp HHHHHHHHCS---EEEHHHHHHTSSS----CHHHHHHHHHHHHHTTSCEEC--C-CSCEEECHHHHHHHHSSC
T ss_pred HHHHHHHhCC---cccHHHHHHHhCC----CHHHHHHHHHHHHHCCcEEEecCC-CceEEehHHHHHHHccCC
Confidence 3566666532 3588999999999 999999999999999999987432 345677777777776654
No 496
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=78.99 E-value=2.4 Score=28.89 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=44.7
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeeccCCCCCceeccHhhhHhhcC
Q 039903 21 VFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTSAGDDQRLYGLAHVAKYFVLN 91 (233)
Q Consensus 21 lfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~lt~~s~~l~~~ 91 (233)
+.+.|.+... .+.|+++||+.+++ +++.+.|+++....+.+-+.. ..+++......|...
T Consensus 10 ~~~~i~~~~~-~~~~~~~lA~~~~~----S~~~l~r~fk~~~G~s~~~~~------~~~Rl~~A~~lL~~~ 69 (108)
T 3oou_A 10 VLSYITEHFS-EGMSLKTLGNDFHI----NAVYLGQLFQKEMGEHFTDYL------NRYRVNYAKEELLQT 69 (108)
T ss_dssp HHHHHHHHTT-SCCCHHHHHHHHTS----CHHHHHHHHHHHHSSCHHHHH------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHHHH------HHHHHHHHHHHHHcC
Confidence 3445555421 48999999999999 999999999999888777763 446677666666644
No 497
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=78.99 E-value=1.4 Score=24.77 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.7
Q ss_pred CCCHHHHHHhCCCCCCCChhhHHHHHHHHh
Q 039903 33 KISAVEIAAQMPSSNPNAAVMLDRILRLLV 62 (233)
Q Consensus 33 ~~t~~elA~~~~~~~~~~~~~l~rlL~~L~ 62 (233)
..|..+||+.+++ +...+.++++...
T Consensus 21 g~s~~~IA~~lgi----s~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 21 NVSLHEMSRKISR----SRHCIRVYLKDPV 46 (51)
T ss_dssp TCCHHHHHHHHTC----CHHHHHHHHHCST
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhhHH
Confidence 5899999999999 9999999987543
No 498
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=78.70 E-value=2.7 Score=33.70 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=32.0
Q ss_pred cCcceEEEecCCccHHHHHHHHHcCCCcEEEeechH-HHhhcc
Q 039903 167 EQIKQLVDVGGGLGVNVNIIISNYLHIKGVNFDLSH-VIQDSS 208 (233)
Q Consensus 167 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~~~a~ 208 (233)
.....|+|..||+|..+.+..+. +.+++.+|+.+ .++.++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 34579999999999999998876 56899999854 555554
No 499
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=78.64 E-value=3.1 Score=32.79 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=38.0
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeeec
Q 039903 21 VFEIIAKAGPTAKISAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCTS 71 (233)
Q Consensus 21 lfd~L~~~~~~~~~t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~~ 71 (233)
|.+.+... |++|+.+||+.+++ +.......|+.+...|++..+.
T Consensus 159 il~~~~~~---g~vt~~~la~~l~w----s~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 159 ALETVSEK---GSLTSEEFAKLVGM----SVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp HHHHHHHT---SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHC---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCEEEEC
Confidence 44445544 69999999999999 9999999999999999999974
No 500
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=78.61 E-value=2 Score=30.52 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=31.6
Q ss_pred CC-CHHHHHHhCCCCCCCChhhHHHHHHHHhcCCceeee
Q 039903 33 KI-SAVEIAAQMPSSNPNAAVMLDRILRLLVTHRVLRCT 70 (233)
Q Consensus 33 ~~-t~~elA~~~~~~~~~~~~~l~rlL~~L~~~gll~~~ 70 (233)
.+ |..+||+.+|+ +..-+++-++.|...|+++..
T Consensus 36 ~Lps~~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 36 KLPSVREMGVKLAV----NPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp BCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEe
Confidence 45 68999999999 999999999999999999986
Done!