Query 039905
Match_columns 168
No_of_seqs 40 out of 42
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vxp_A Transforming growth fac 99.7 6.9E-17 2.3E-21 121.6 6.4 111 21-138 12-131 (132)
2 1w7d_A Fasciclin-like protein; 99.7 5.2E-17 1.8E-21 122.9 4.7 89 43-139 35-134 (137)
3 1nyo_A Immunogenic protein MPT 99.6 2.4E-15 8.2E-20 117.7 6.2 113 15-139 31-160 (163)
4 1o70_A Fasciclin I, FAS I, FCN 99.1 3.1E-11 1.1E-15 101.7 4.6 96 43-140 46-156 (324)
5 1o70_A Fasciclin I, FAS I, FCN 99.1 1.9E-11 6.4E-16 103.0 2.7 117 21-144 169-313 (324)
6 4egx_A Kinesin-like protein KI 84.3 0.93 3.2E-05 36.0 4.0 45 100-144 131-175 (184)
7 3fm8_A Kinesin-like protein KI 77.9 2.8 9.7E-05 31.2 4.5 44 100-143 81-124 (124)
8 4ejq_A Kinesin-like protein KI 57.5 11 0.00037 28.6 4.0 43 101-143 102-144 (154)
9 4awe_A Endo-beta-D-1,4-mannana 43.8 9.4 0.00032 29.4 1.6 22 91-119 1-22 (387)
10 2pfu_A Biopolymer transport EX 30.9 59 0.002 21.7 3.9 25 99-123 20-44 (99)
11 3nph_B Phycobilisome 32.1 kDa 26.8 33 0.0011 26.8 2.2 27 5-31 91-118 (148)
12 1wln_A Afadin; beta sandwich, 26.8 67 0.0023 22.8 3.8 44 100-144 70-115 (120)
13 2ky4_A Phycobilisome linker po 26.6 33 0.0011 26.8 2.2 27 5-31 94-121 (149)
14 1t2w_A Sortase; transpeptidase 25.1 79 0.0027 23.2 4.0 40 74-122 63-103 (145)
15 3pru_C Phycobilisome 32.1 kDa 24.9 47 0.0016 26.2 2.8 28 5-32 96-124 (154)
16 3osj_A Phycobilisome LCM core- 23.3 47 0.0016 26.0 2.5 27 5-31 102-129 (147)
17 1wv3_A Similar to DNA segregat 22.4 68 0.0023 25.8 3.4 38 98-135 124-163 (238)
18 1nei_A Hypothetical protein YO 22.3 62 0.0021 21.9 2.6 19 95-114 2-20 (60)
19 4g1j_A Sortase family protein; 21.6 1E+02 0.0035 25.0 4.3 44 70-122 120-165 (222)
20 2w1j_A Putative sortase, sorta 21.2 1.1E+02 0.0037 24.4 4.3 29 94-122 129-158 (212)
No 1
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.67 E-value=6.9e-17 Score=121.61 Aligned_cols=111 Identities=14% Similarity=0.183 Sum_probs=84.4
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCceEEEeeCChhhhccc--------CChhhHHHHHhhcccCcccccccccCCCCCcee
Q 039905 21 KSYHEFVVLLKMIIASSNPLQSTAVTFLMPNDEKLSEVV--------ATPEHLHDFILSHSIPTVLLNNNLLHFPNGTLV 92 (168)
Q Consensus 21 ~gY~~~a~lL~ml~~s~~~~~~~~lT~faP~D~als~~~--------~~~~~~~~~Ll~H~VP~~l~~~~L~~fp~Gt~v 92 (168)
..|+.|+.+++.......-...++.|+|||+|+||.+.. .+.+.+.++|+||++|..+.-.+| +.|..+
T Consensus 12 ~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~~~l---~~~~~~ 88 (132)
T 2vxp_A 12 NRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGGI---GALVRL 88 (132)
T ss_dssp TTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCSTTC---SSCEEE
T ss_pred CCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeehhhc---cCCceE
Confidence 567777766663111000012346999999999998763 256788899999999998876665 467888
Q ss_pred ccCCCCceEEEEecCCcceEEcceEecCCCcc-cCCeeEEecccccc
Q 039905 93 PSSQPGRMLSMTNSGKLGTYVNNARLVNFNVW-MNSQLKSHGISSSI 138 (168)
Q Consensus 93 PT~l~g~~ItVTn~g~~~l~lNnV~I~~Pdl~-~n~~I~~HGId~vL 138 (168)
+| +.|..|+|+..++ .+++||++|+.+|+. .|| ++|.||+||
T Consensus 89 ~t-l~G~~l~v~~~~~-~v~vn~a~v~~~di~a~NG--vIHvID~VL 131 (132)
T 2vxp_A 89 KS-LQGDKLEVSLKNN-VVSVNKEPVAEPDIMATNG--VVHVITNVL 131 (132)
T ss_dssp EB-TTSSEEEEEEETT-EEEESSCBEEEEEEEETTE--EEEEESSCC
T ss_pred ec-CCCCEEEEEEeCC-EEEEeccEEEEcceecCCE--EEEEECcEe
Confidence 87 4788999998876 799999999999986 456 799999997
No 2
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.66 E-value=5.2e-17 Score=122.93 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=75.1
Q ss_pred CceEEEeeCChhhhcccC----------ChhhHHHHHhhcccCcccccccccCCCCCceeccCCCCceEEEEecCCcceE
Q 039905 43 TAVTFLMPNDEKLSEVVA----------TPEHLHDFILSHSIPTVLLNNNLLHFPNGTLVPSSQPGRMLSMTNSGKLGTY 112 (168)
Q Consensus 43 ~~lT~faP~D~als~~~~----------~~~~~~~~Ll~H~VP~~l~~~~L~~fp~Gt~vPT~l~g~~ItVTn~g~~~l~ 112 (168)
++.|+|||+|+||.+... +.+.+.++|+||+||..+...+|. .|..++| +.|..|+|+..++ ++
T Consensus 35 ~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~~~~~l~---~~~~~~t-l~G~~l~v~~~~g--v~ 108 (137)
T 1w7d_A 35 GPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVMSSDLT---EGMTAET-VEGGALTVTLEGG--PK 108 (137)
T ss_dssp SCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCCCTTTSC---SSEEEEC-TTSCEEEEECTTS--CE
T ss_pred CCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEEcHHHhc---CCCeeec-cCCceEEEEecCC--EE
Confidence 469999999999988632 456788999999999998877765 4778876 5789999998865 99
Q ss_pred EcceEecCCCcc-cCCeeEEeccccccc
Q 039905 113 VNNARLVNFNVW-MNSQLKSHGISSSIT 139 (168)
Q Consensus 113 lNnV~I~~Pdl~-~n~~I~~HGId~vL~ 139 (168)
+||++|+.+|+. .|| ++|.||+||.
T Consensus 109 vn~a~v~~~di~~~NG--vIHvID~VL~ 134 (137)
T 1w7d_A 109 VNGVSISQPDVDASNG--VIHVIDGVLM 134 (137)
T ss_dssp ETTEECSBCCCBCSSS--EEEBCSSCCS
T ss_pred EeCcEEEECCeecCCe--EEEEECeeeC
Confidence 999999999986 567 6999999985
No 3
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.57 E-value=2.4e-15 Score=117.72 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=87.9
Q ss_pred HHHHh-hccHHHHHHHHH-----H--HhcCCCCCCCCceEEEeeCChhhhcccC--------ChhhHHHHHhhcccCccc
Q 039905 15 VAETR-AKSYHEFVVLLK-----M--IIASSNPLQSTAVTFLMPNDEKLSEVVA--------TPEHLHDFILSHSIPTVL 78 (168)
Q Consensus 15 ~~~lr-~~gY~~~a~lL~-----m--l~~s~~~~~~~~lT~faP~D~als~~~~--------~~~~~~~~Ll~H~VP~~l 78 (168)
++.|+ ...|+.|+.+|+ - +.+ .+. ..+ .|+|||+|+||.+... +.+.+.++|+||+||..+
T Consensus 31 ~~~l~~~~~~s~f~~~l~~~~~~~agl~~-~L~-~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~g~~ 107 (163)
T 1nyo_A 31 AVAASNNPELTTLTAALSGQLNPQVNLVD-TLN-SGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQT 107 (163)
T ss_dssp HHHHTTSTTTHHHHHHHHSSSCTTCCCHH-HHT-SSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEESCC
T ss_pred HHHHHhCCCHHHHHHHHHhccccccCHHH-HhC-CCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceECCEE
Confidence 34444 456888888887 2 111 111 234 9999999999987631 457789999999999999
Q ss_pred ccccccCCCCCceeccCCCCceEEEEecCCcceEEcceEecCCCccc-CCeeEEeccccccc
Q 039905 79 LNNNLLHFPNGTLVPSSQPGRMLSMTNSGKLGTYVNNARLVNFNVWM-NSQLKSHGISSSIT 139 (168)
Q Consensus 79 ~~~~L~~fp~Gt~vPT~l~g~~ItVTn~g~~~l~lNnV~I~~Pdl~~-n~~I~~HGId~vL~ 139 (168)
...+|. | .++|. .|..|+|+..++ .++|||++|+.+|+.. |+ ++|.||+||.
T Consensus 108 ~~~~l~----g-~~~Tl-~G~~l~v~~~~~-~v~vn~a~V~~~di~a~NG--vIHvID~VL~ 160 (163)
T 1nyo_A 108 SPANVV----G-TRQTL-QGASVTVTGQGN-SLKVGNADVVCGGVSTANA--TVYMIDSVLM 160 (163)
T ss_dssp CTTTSC----E-EEECT-TSSEEEEEECSS-CEEETTEECSSBCCCCSSE--EEBCBSSCCC
T ss_pred cHHHhC----C-ccccC-CCCEEEEEEECC-EEEEeccEEEECceEcCCE--EEEEECcEeC
Confidence 999986 5 67775 799999998876 7999999999999975 44 7999999985
No 4
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.13 E-value=3.1e-11 Score=101.70 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=75.2
Q ss_pred CceEEEeeCChhhhccc-----CChhhHHHHHhhcccCcccccccccCCCCC-c-eeccCCCCceE--EEEecC-CcceE
Q 039905 43 TAVTFLMPNDEKLSEVV-----ATPEHLHDFILSHSIPTVLLNNNLLHFPNG-T-LVPSSQPGRML--SMTNSG-KLGTY 112 (168)
Q Consensus 43 ~~lT~faP~D~als~~~-----~~~~~~~~~Ll~H~VP~~l~~~~L~~fp~G-t-~vPT~l~g~~I--tVTn~g-~~~l~ 112 (168)
++.|+|||+|+||.+.. .+.+.+.++|++|+||..+...+|...+.| . .++|...+..+ +|+.++ +..+.
T Consensus 46 ~~~TvFAPtn~Af~~~~~~~l~~~~~~l~~iL~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~~~l~~~v~~~~~~~~v~ 125 (324)
T 1o70_A 46 TEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVIT 125 (324)
T ss_dssp SSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTCEEEEEEESCGGGCEEE
T ss_pred CCeEEEEEChHhhhcccHhhhhCCHHHHHHHHHhcEeCCeecHHHHhhccCCCceEEEcCCCCceEEEEEeecCCceEEE
Confidence 46999999999997653 266788999999999999999999876632 2 78888766544 454432 34689
Q ss_pred Ecc----eEecCCCccc-CCeeEEecccccccc
Q 039905 113 VNN----ARLVNFNVWM-NSQLKSHGISSSITC 140 (168)
Q Consensus 113 lNn----V~I~~Pdl~~-n~~I~~HGId~vL~~ 140 (168)
+|| ++|+.+|+.. || ++|.||+||.-
T Consensus 126 v~~g~~~a~v~~~di~~~NG--vIhvID~VL~p 156 (324)
T 1o70_A 126 VEGGGVNATVIQADVAQTNG--YVHIIDHVLGV 156 (324)
T ss_dssp EEETTEEEEEEEEEEECSSE--EEEEESSCTTS
T ss_pred EcCCceeEEEEeccccccCc--EEEEEchhhhh
Confidence 995 9999999864 56 79999999965
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.11 E-value=1.9e-11 Score=103.01 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=82.9
Q ss_pred ccHHHHHHHHHHHhcCCCC--C--CCCceEEEeeCChhhhccc----------C--Ch-hhHHHHHhhcccCc--ccccc
Q 039905 21 KSYHEFVVLLKMIIASSNP--L--QSTAVTFLMPNDEKLSEVV----------A--TP-EHLHDFILSHSIPT--VLLNN 81 (168)
Q Consensus 21 ~gY~~~a~lL~ml~~s~~~--~--~~~~lT~faP~D~als~~~----------~--~~-~~~~~~Ll~H~VP~--~l~~~ 81 (168)
..|+.|+.+++. +.+. . -.++.|+|||+|+||.+.. . +. +.+.++|+||+||. .++..
T Consensus 169 ~~fs~~~~~l~~---~gl~~~L~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~yHvv~~~~~~~~~ 245 (324)
T 1o70_A 169 PMMSDTYKMGKF---SHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLAISDKEYTMK 245 (324)
T ss_dssp GGGHHHHHHTTT---TTTTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEEESSCCCHH
T ss_pred chHHHHHHHHHh---hCHHHHhCCCCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHhcEeCCcceEcHH
Confidence 457777666552 2221 1 2357999999999998762 1 11 38899999999999 88888
Q ss_pred cccCCC--CCc-eeccCCCCceEEEEec-CCcceEEc----ceEecCCCcc-cCCeeEEecccccccccCCc
Q 039905 82 NLLHFP--NGT-LVPSSQPGRMLSMTNS-GKLGTYVN----NARLVNFNVW-MNSQLKSHGISSSITCNSPI 144 (168)
Q Consensus 82 ~L~~fp--~Gt-~vPT~l~g~~ItVTn~-g~~~l~lN----nV~I~~Pdl~-~n~~I~~HGId~vL~~~~~~ 144 (168)
+|.... .|. .++|.. ..++|+.. .++.+++| +++|+.+|+. .|| ++|.||+||.=.+..
T Consensus 246 ~l~~~~~~~~~~~~~Tl~--~~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NG--vIHvID~VL~P~~~~ 313 (324)
T 1o70_A 246 DLVKFSQESGSVILPTFR--DSLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNG--IIHVIDYPLLEEKDV 313 (324)
T ss_dssp HHHHHHHHSSSEEEECSS--SEEEEEEEEETTEEEEEETTEEEEEEEEEEEETTE--EEEEESSCSCCTTTT
T ss_pred HHhhhccCCCeeeeeccC--CcEEEEEEecCCEEEEEecCceeEEEEcccccCCC--eEEEeceeecCCccc
Confidence 887643 223 478876 56777653 23378888 8999999987 466 799999999755543
No 6
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=84.28 E-value=0.93 Score=35.97 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=36.3
Q ss_pred eEEEEecCCcceEEcceEecCCCcccCCeeEEecccccccccCCc
Q 039905 100 MLSMTNSGKLGTYVNNARLVNFNVWMNSQLKSHGISSSITCNSPI 144 (168)
Q Consensus 100 ~ItVTn~g~~~l~lNnV~I~~Pdl~~n~~I~~HGId~vL~~~~~~ 144 (168)
.++++-..+...+|||.+|..|=....+-.++-|=.-++.|+.|-
T Consensus 131 ~vtl~p~~~a~t~VNG~~I~~~~~L~~GDrI~lG~~h~Frfn~P~ 175 (184)
T 4egx_A 131 VVTLEPCEGADTYVNGKKVTEPSILRSGNRIIMGKSHVFRFNHPE 175 (184)
T ss_dssp EEEEEECTTCCEEETTEECCSCEECCTTCEEEETTTEEEEEECHH
T ss_pred EEEEeeCCCCeEEEcCEEccccEEcCCCCEEEECCCCEEEECChH
Confidence 456666666689999999999987888777789988888998773
No 7
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=77.85 E-value=2.8 Score=31.22 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=33.0
Q ss_pred eEEEEecCCcceEEcceEecCCCcccCCeeEEecccccccccCC
Q 039905 100 MLSMTNSGKLGTYVNNARLVNFNVWMNSQLKSHGISSSITCNSP 143 (168)
Q Consensus 100 ~ItVTn~g~~~l~lNnV~I~~Pdl~~n~~I~~HGId~vL~~~~~ 143 (168)
.++|+.-+..+.+|||.+|..|=...++-..+-|=..++.|+.|
T Consensus 81 ~~~l~dl~~ngt~VNG~~V~~~~~L~~GD~I~lG~~~~FrFn~P 124 (124)
T 3fm8_A 81 QVMLTPQKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP 124 (124)
T ss_dssp CEEEEECTTCCEEETTEECCSCEEECTTCEEEETTTEEEEEECC
T ss_pred eEEEEECCCCCEEECCEEcCCcEECCCCCEEEECCCeEEEEECc
Confidence 35666666668999999999886677766666776678888766
No 8
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=57.48 E-value=11 Score=28.63 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=28.4
Q ss_pred EEEEecCCcceEEcceEecCCCcccCCeeEEecccccccccCC
Q 039905 101 LSMTNSGKLGTYVNNARLVNFNVWMNSQLKSHGISSSITCNSP 143 (168)
Q Consensus 101 ItVTn~g~~~l~lNnV~I~~Pdl~~n~~I~~HGId~vL~~~~~ 143 (168)
+++.-.+..+.+|||.+|..|=...++-..+-|=..++.|+.|
T Consensus 102 ~~~d~~S~ngt~VNG~~i~~~~~L~~GD~I~~G~~~~Frf~~P 144 (154)
T 4ejq_A 102 VTLEPCEGADTYVNGKKVTEPSILRSGNRIIMGKSHVFRFNHP 144 (154)
T ss_dssp EEEEECTTCCEEETTEECCSCEECCTTCEEEETTTEEEEEECH
T ss_pred EEEecCCCCceEECCEEcCCceECCCCCEEEECCcEEEEEcCh
Confidence 3344445558999999998775455544445575557777765
No 9
>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila}
Probab=43.82 E-value=9.4 Score=29.37 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=12.8
Q ss_pred eeccCCCCceEEEEecCCcceEEcceEec
Q 039905 91 LVPSSQPGRMLSMTNSGKLGTYVNNARLV 119 (168)
Q Consensus 91 ~vPT~l~g~~ItVTn~g~~~l~lNnV~I~ 119 (168)
+||+++ ||.+|+ .|.|||.++.
T Consensus 1 ~vp~GF------v~~~g~-~f~~nG~~~~ 22 (387)
T 4awe_A 1 KVPKGF------VTTEGD-HFKLDGKDFY 22 (387)
T ss_dssp ----CC------CEEETT-EEEETTEECC
T ss_pred CCCCcC------EEEECC-EEEECCEEEE
Confidence 477765 555666 7899998764
No 10
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=30.90 E-value=59 Score=21.72 Aligned_cols=25 Identities=4% Similarity=0.183 Sum_probs=17.1
Q ss_pred ceEEEEecCCcceEEcceEecCCCc
Q 039905 99 RMLSMTNSGKLGTYVNNARLVNFNV 123 (168)
Q Consensus 99 ~~ItVTn~g~~~l~lNnV~I~~Pdl 123 (168)
..|+|+=..++.+++||.++...++
T Consensus 20 ~~i~i~I~~dg~i~~~~~~v~~~~L 44 (99)
T 2pfu_A 20 KPVYLSVKADNSMFIGNDPVTDETM 44 (99)
T ss_dssp CCCEEEEETTTEEEETTEEECSSSH
T ss_pred CCEEEEEeCCCCEEECCEecCHHHH
Confidence 4455665566689999988865443
No 11
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=26.79 E-value=33 Score=26.84 Aligned_cols=27 Identities=7% Similarity=0.155 Sum_probs=23.6
Q ss_pred cCCcccHHHHHHHHhhccHHHHH-HHHH
Q 039905 5 QINQTDLETAVAETRAKSYHEFV-VLLK 31 (168)
Q Consensus 5 ~~n~~dl~~A~~~lr~~gY~~~a-~lL~ 31 (168)
+.||.|+.+-.+.+.++||.+++ .++|
T Consensus 91 p~~q~Ei~~~~~i~a~~G~~a~IDslid 118 (148)
T 3nph_B 91 PYDQSEIAFHTDLYHQGGYEAEINSYID 118 (148)
T ss_dssp CSSHHHHHHHHHHHHHHCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHhC
Confidence 56899999999999999999997 5555
No 12
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=26.79 E-value=67 Score=22.78 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=29.7
Q ss_pred eEEEEecC-CcceEEcceEecCC-CcccCCeeEEecccccccccCCc
Q 039905 100 MLSMTNSG-KLGTYVNNARLVNF-NVWMNSQLKSHGISSSITCNSPI 144 (168)
Q Consensus 100 ~ItVTn~g-~~~l~lNnV~I~~P-dl~~n~~I~~HGId~vL~~~~~~ 144 (168)
.+.|+..+ ..+.+|||.+|..| .|-.++.|++ |=..++.|..|-
T Consensus 70 ~~~l~dl~S~ngt~vNg~~i~~~~~L~~GD~I~i-G~~~~~~f~~p~ 115 (120)
T 1wln_A 70 VVTVTPRSMDAETYVDGQRISETTMLQSGMRLQF-GTSHVFKFVDPS 115 (120)
T ss_dssp CEEEEESCSSSCEEETSCBCSSCEEECTTCEEEE-TTTEEEEEECSS
T ss_pred EEEEEECCCCCCEEECCEEcCCCEECCCCCEEEE-CCceEEEEECCc
Confidence 45666663 55999999999988 5555566655 433567776653
No 13
>2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP}
Probab=26.62 E-value=33 Score=26.83 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=23.4
Q ss_pred cCCcccHHHHHHHHhhccHHHHH-HHHH
Q 039905 5 QINQTDLETAVAETRAKSYHEFV-VLLK 31 (168)
Q Consensus 5 ~~n~~dl~~A~~~lr~~gY~~~a-~lL~ 31 (168)
+.||.|+.+-.+.+.++||.+++ .++|
T Consensus 94 p~~q~Ei~~~~~ila~~G~~a~IDslid 121 (149)
T 2ky4_A 94 PIDQAEIRKYNQILATQGIRAFINALVN 121 (149)
T ss_dssp CCSHHHHHHHHHHHHHTCHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHhC
Confidence 57899999999999999999997 5554
No 14
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=25.14 E-value=79 Score=23.20 Aligned_cols=40 Identities=15% Similarity=-0.003 Sum_probs=31.0
Q ss_pred cCcccccccccCCCCCceeccCCCCceEEEEecC-CcceEEcceEecCCC
Q 039905 74 IPTVLLNNNLLHFPNGTLVPSSQPGRMLSMTNSG-KLGTYVNNARLVNFN 122 (168)
Q Consensus 74 VP~~l~~~~L~~fp~Gt~vPT~l~g~~ItVTn~g-~~~l~lNnV~I~~Pd 122 (168)
.+..-+|.+|..+..| ..|.|++.+ .-.|.|..++++.|+
T Consensus 63 ~~~~~~F~~L~~l~~G---------d~i~v~~~~~~~~Y~V~~~~~v~~~ 103 (145)
T 1t2w_A 63 DRPNYQFTNLKAAKKG---------SMVYFKVGNETRKYKMTSIRDVKPT 103 (145)
T ss_dssp TSTTSTTTTGGGCCTT---------CEEEEEETTEEEEEEEEEEEEECTT
T ss_pred CCCCcccCChhhCCCC---------CEEEEEECCEEEEEEEEEEEEECCC
Confidence 4456778888887765 578898876 337899999999987
No 15
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=24.92 E-value=47 Score=26.15 Aligned_cols=28 Identities=0% Similarity=0.074 Sum_probs=24.6
Q ss_pred cCCcccHHHHHHHHhhccHHHHH-HHHHH
Q 039905 5 QINQTDLETAVAETRAKSYHEFV-VLLKM 32 (168)
Q Consensus 5 ~~n~~dl~~A~~~lr~~gY~~~a-~lL~m 32 (168)
+.||.|+..-...+.++||.+++ .++|.
T Consensus 96 p~~~~E~~~~~~i~a~~G~~a~IDslidS 124 (154)
T 3pru_C 96 PFSEDEVIFHLDLYENQGFDADIDSYIDS 124 (154)
T ss_dssp CSCHHHHHHHHHHHHHHCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHccCchhhhhHhhCc
Confidence 56899999999999999999998 67663
No 16
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=23.35 E-value=47 Score=25.95 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=23.8
Q ss_pred cCCcccHHHHHHHHhhccHHHHH-HHHH
Q 039905 5 QINQTDLETAVAETRAKSYHEFV-VLLK 31 (168)
Q Consensus 5 ~~n~~dl~~A~~~lr~~gY~~~a-~lL~ 31 (168)
+.||.|+..-...+.++||.+++ .++|
T Consensus 102 p~~~~E~~~~~~i~a~~G~~a~IDslid 129 (147)
T 3osj_A 102 PSSREEVQKYFSIVSSGGLPALVDALVD 129 (147)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCcHhHHHHHhC
Confidence 56899999999999999999997 5655
No 17
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=22.39 E-value=68 Score=25.84 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=26.3
Q ss_pred CceEEEEecCCcceEEcceEecCCCccc--CCeeEEeccc
Q 039905 98 GRMLSMTNSGKLGTYVNNARLVNFNVWM--NSQLKSHGIS 135 (168)
Q Consensus 98 g~~ItVTn~g~~~l~lNnV~I~~Pdl~~--n~~I~~HGId 135 (168)
+..|.+-+++++.+|+||.+|..+--.. ++.|.+-|+-
T Consensus 124 ~~~l~~l~s~ngtvyvNg~~i~~~~~L~~~GD~I~ig~~~ 163 (238)
T 1wv3_A 124 SQYVRIVHDKNTDVYINYELQEQLTNKAYIGDHIYVEGIW 163 (238)
T ss_dssp HCEEEEECCTTCCEEETTEECCSSEEEEETTCEEEETTEE
T ss_pred cEEEEEccCCCCCEEECCEEeccceeccCCcCEEEECCEE
Confidence 3456676656666899999998876555 4677776653
No 18
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=22.26 E-value=62 Score=21.87 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=14.4
Q ss_pred CCCCceEEEEecCCcceEEc
Q 039905 95 SQPGRMLSMTNSGKLGTYVN 114 (168)
Q Consensus 95 ~l~g~~ItVTn~g~~~l~lN 114 (168)
.+.++.++|||+.+ +++|+
T Consensus 2 g~~~~~lTvTNnnn-GVSVd 20 (60)
T 1nei_A 2 GKATYTVTVTNNSN-GVSVD 20 (60)
T ss_dssp CCCCEEEEEEETTT-CCEEE
T ss_pred CcceEEEEEEeCCC-ceEee
Confidence 45789999999987 55543
No 19
>4g1j_A Sortase family protein; cysteine protease, extracellular, transferase; 1.75A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A 3rbj_A
Probab=21.62 E-value=1e+02 Score=24.96 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=30.7
Q ss_pred hhccc-CcccccccccCCCCCceeccCCCCceEEEEecCC-cceEEcceEecCCC
Q 039905 70 LSHSI-PTVLLNNNLLHFPNGTLVPSSQPGRMLSMTNSGK-LGTYVNNARLVNFN 122 (168)
Q Consensus 70 l~H~V-P~~l~~~~L~~fp~Gt~vPT~l~g~~ItVTn~g~-~~l~lNnV~I~~Pd 122 (168)
--|.- +..-+|.+|..+. .|..|.|++.++ -.|.|..++++.|+
T Consensus 120 aGHr~~~~~~~F~~L~~Lk---------~GD~I~v~~~~~~~~Y~V~~~~vV~p~ 165 (222)
T 4g1j_A 120 TAHRGLPTAKLFTNLDKVT---------VGDRFYIEHIGGKIAYQVDQIKVIAPD 165 (222)
T ss_dssp ECCSCBTTBCTTGGGGGCC---------TTCEEEEEETTEEEEEEEEEEEEECTT
T ss_pred EEeCCCCCCchhccHhhCc---------cCCEEEEEECCEEEEEEEeeEEEECcc
Confidence 33443 4445566665554 566899998863 38999999999998
No 20
>2w1j_A Putative sortase, sortase C-1; pathogenicity, transferase; 1.24A {Streptococcus pneumoniae} PDB: 2wts_A 3re9_A
Probab=21.21 E-value=1.1e+02 Score=24.43 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=22.2
Q ss_pred cCCCCceEEEEecCC-cceEEcceEecCCC
Q 039905 94 SSQPGRMLSMTNSGK-LGTYVNNARLVNFN 122 (168)
Q Consensus 94 T~l~g~~ItVTn~g~-~~l~lNnV~I~~Pd 122 (168)
.+-+|..|.|++.++ -.|.|..++++.|+
T Consensus 129 ~l~~GD~i~v~~~~~~~~Y~V~~~~vv~p~ 158 (212)
T 2w1j_A 129 KLKVGDKFYVHNIKEVMAYQVDQVKVIEPT 158 (212)
T ss_dssp GCCTTCEEEEECSSCEEEEEEEEEEEECTT
T ss_pred hCccCCEEEEEECCEEEEEEEEEEEEECCC
Confidence 344556899998653 38899999999887
Done!