BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039906
         (100 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V4C|A Chain A, Crystal Structure Of A Semialdehyde Dehydrogenase From
           Sinorhizobium Meliloti 1021
 pdb|3V4C|B Chain B, Crystal Structure Of A Semialdehyde Dehydrogenase From
           Sinorhizobium Meliloti 1021
          Length = 528

 Score = 28.9 bits (63), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 7   GFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQP 59
           GF    +++   V      AST+      F A  VG   ++RFL PV+Y N P
Sbjct: 472 GFPTGVEVVDSXVHGGPYPASTN------FGATSVGTXSIRRFLRPVAYQNXP 518


>pdb|2NYI|A Chain A, Crystal Structure Of An Unknown Protein From Galdieria
           Sulphuraria
 pdb|2NYI|B Chain B, Crystal Structure Of An Unknown Protein From Galdieria
           Sulphuraria
          Length = 195

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 3/20 (15%)

Query: 59  PLFQEL---LSRVEEEFGFN 75
           PL+QE+   LSRVEEEFG +
Sbjct: 150 PLYQEVVTALSRVEEEFGVD 169


>pdb|1MG7|A Chain A, Crystal Structure Of Xol-1
 pdb|1MG7|B Chain B, Crystal Structure Of Xol-1
          Length = 417

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 43  VTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTD 92
           V Q     + V + +Q   ++L++  E+  GF    GG+ +  ++D+F D
Sbjct: 265 VRQEDYTCLEVEFDSQVALEKLMNEHEQVEGFEVQQGGILVALKKDSFFD 314


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,644,330
Number of Sequences: 62578
Number of extensions: 93109
Number of successful extensions: 185
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 3
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)