Query 039906
Match_columns 100
No_of_seqs 115 out of 654
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 3.8E-41 8.3E-46 233.2 10.6 95 1-97 1-103 (104)
2 PLN03220 uncharacterized prote 100.0 4.6E-40 1E-44 227.9 10.5 96 1-96 1-102 (105)
3 PF02519 Auxin_inducible: Auxi 100.0 3E-37 6.4E-42 211.5 9.1 96 1-98 1-100 (100)
4 PLN03219 uncharacterized prote 100.0 5.2E-35 1.1E-39 203.6 9.6 70 27-96 34-104 (108)
5 PF02214 BTB_2: BTB/POZ domain 86.3 0.98 2.1E-05 29.0 3.1 57 39-99 3-62 (94)
6 PRK02899 adaptor protein; Prov 84.6 0.88 1.9E-05 34.3 2.6 24 59-83 39-62 (197)
7 smart00666 PB1 PB1 domain. Pho 83.1 6.3 0.00014 24.5 5.7 53 40-98 7-69 (81)
8 PRK02315 adaptor protein; Prov 78.9 1.6 3.5E-05 33.6 2.2 25 58-83 38-62 (233)
9 PF05389 MecA: Negative regula 71.9 1.2 2.7E-05 33.4 0.0 25 58-83 38-62 (220)
10 cd06410 PB1_UP2 Uncharacterize 64.8 26 0.00057 23.7 5.4 55 38-98 17-83 (97)
11 PF02209 VHP: Villin headpiece 51.5 8 0.00017 22.1 0.9 19 55-73 1-19 (36)
12 cd05992 PB1 The PB1 domain is 51.5 54 0.0012 20.0 7.4 55 39-98 5-69 (81)
13 smart00153 VHP Villin headpiec 49.9 9.7 0.00021 21.6 1.1 19 55-73 1-19 (36)
14 PF02100 ODC_AZ: Ornithine dec 48.5 22 0.00048 24.4 2.9 48 47-96 25-76 (108)
15 PF08861 DUF1828: Domain of un 46.5 69 0.0015 20.7 4.9 40 58-97 44-83 (90)
16 PF11834 DUF3354: Domain of un 44.5 20 0.00042 23.1 2.0 16 60-75 27-42 (69)
17 PF00651 BTB: BTB/POZ domain; 43.3 81 0.0018 19.7 5.3 54 37-97 13-71 (111)
18 PRK10308 3-methyl-adenine DNA 41.8 1.2E+02 0.0025 24.0 6.4 64 34-98 45-122 (283)
19 PF00564 PB1: PB1 domain; Int 41.3 83 0.0018 19.2 6.2 54 39-97 6-69 (84)
20 PF12058 DUF3539: Protein of u 40.6 4.9 0.00011 27.4 -1.3 11 54-64 4-14 (88)
21 COG1759 5-formaminoimidazole-4 35.4 16 0.00035 30.5 0.7 25 29-53 87-112 (361)
22 PF11822 DUF3342: Domain of un 32.2 60 0.0013 26.7 3.4 50 46-99 13-67 (317)
23 PRK14193 bifunctional 5,10-met 31.1 2.6E+02 0.0057 22.4 6.9 54 33-99 32-87 (284)
24 COG4862 MecA Negative regulato 29.9 37 0.0008 26.7 1.8 27 57-84 37-63 (224)
25 PRK13277 5-formaminoimidazole- 29.5 16 0.00034 30.5 -0.3 24 29-52 87-111 (366)
26 cd01406 SIR2-like Sir2-like: P 29.5 61 0.0013 24.1 2.9 36 35-77 1-36 (242)
27 PRK14186 bifunctional 5,10-met 29.4 2.3E+02 0.0049 22.9 6.3 54 33-99 32-87 (297)
28 PRK14172 bifunctional 5,10-met 29.0 2.5E+02 0.0054 22.4 6.4 53 34-99 33-87 (278)
29 cd04395 RhoGAP_ARHGAP21 RhoGAP 28.8 1.2E+02 0.0026 22.1 4.3 40 59-99 19-58 (196)
30 PF11470 TUG-UBL1: GLUT4 regul 27.7 88 0.0019 19.7 3.0 33 47-81 7-39 (65)
31 PF07369 DUF1488: Protein of u 27.1 1.4E+02 0.0031 18.7 3.9 20 36-56 18-37 (83)
32 PF12062 HSNSD: heparan sulfat 26.8 52 0.0011 28.6 2.3 40 34-74 96-141 (487)
33 PRK14188 bifunctional 5,10-met 26.7 3.1E+02 0.0067 22.0 6.6 55 32-99 31-87 (296)
34 PF00763 THF_DHG_CYH: Tetrahyd 25.7 2.1E+02 0.0045 19.4 4.8 56 31-99 27-84 (117)
35 PRK13347 coproporphyrinogen II 25.7 2E+02 0.0043 23.8 5.5 49 34-90 102-150 (453)
36 PRK14179 bifunctional 5,10-met 25.6 3.5E+02 0.0076 21.6 6.7 54 33-99 32-87 (284)
37 PF11876 DUF3396: Protein of u 25.4 69 0.0015 24.2 2.6 38 47-84 25-64 (208)
38 TIGR02529 EutJ ethanolamine ut 25.0 83 0.0018 23.8 2.9 41 47-88 33-73 (239)
39 PRK14189 bifunctional 5,10-met 24.8 2.4E+02 0.0052 22.6 5.6 54 33-99 32-87 (285)
40 PF07429 Glyco_transf_56: 4-al 24.7 1.5E+02 0.0033 24.8 4.6 44 31-74 180-244 (360)
41 cd04751 Commd3 COMM_Domain con 24.7 81 0.0017 20.9 2.5 20 79-98 65-84 (95)
42 PRK14170 bifunctional 5,10-met 24.7 3.5E+02 0.0076 21.7 6.5 55 32-99 30-86 (284)
43 PRK14192 bifunctional 5,10-met 24.5 2.5E+02 0.0055 22.1 5.7 54 33-99 33-88 (283)
44 COG2139 RPL21A Ribosomal prote 24.2 65 0.0014 22.4 2.0 22 36-58 72-93 (98)
45 cd06407 PB1_NLP A PB1 domain i 23.9 2.1E+02 0.0046 18.5 4.8 46 39-89 5-61 (82)
46 PF12518 DUF3721: Protein of u 23.7 55 0.0012 18.5 1.3 22 66-87 8-31 (34)
47 PRK02797 4-alpha-L-fucosyltran 23.5 1.7E+02 0.0037 24.2 4.6 64 31-98 141-225 (322)
48 PRK14173 bifunctional 5,10-met 23.4 2.6E+02 0.0057 22.4 5.6 53 34-99 30-84 (287)
49 PLN02752 [acyl-carrier protein 23.1 81 0.0018 24.8 2.7 43 32-75 36-78 (343)
50 PF04722 Ssu72: Ssu72-like pro 22.6 92 0.002 24.0 2.8 19 81-99 105-123 (195)
51 TIGR03793 TOMM_pelo TOMM prope 21.8 1.5E+02 0.0033 19.2 3.3 27 56-83 14-44 (77)
52 PRK10792 bifunctional 5,10-met 21.8 2.9E+02 0.0063 22.2 5.6 54 33-99 33-88 (285)
53 cd06080 MUM1_like Mutated mela 21.7 1.7E+02 0.0036 19.2 3.5 42 33-74 28-75 (80)
54 COG5431 Uncharacterized metal- 21.6 1.2E+02 0.0026 21.6 2.9 27 34-62 32-58 (117)
55 PRK09057 coproporphyrinogen II 21.3 1.7E+02 0.0036 23.6 4.2 46 35-88 55-100 (380)
56 PRK14178 bifunctional 5,10-met 21.1 3.4E+02 0.0074 21.7 5.8 55 32-99 25-81 (279)
57 PLN02897 tetrahydrofolate dehy 21.0 2.9E+02 0.0063 22.9 5.5 54 33-99 86-141 (345)
58 PRK14187 bifunctional 5,10-met 21.0 4.5E+02 0.0097 21.2 6.6 54 33-99 32-87 (294)
59 PF06344 Parecho_VpG: Parechov 20.7 40 0.00086 17.0 0.3 12 28-39 7-18 (20)
60 KOG1290 Serine/threonine prote 20.5 61 0.0013 28.8 1.5 21 32-52 62-83 (590)
61 PF04341 DUF485: Protein of un 20.4 75 0.0016 20.8 1.7 12 56-67 2-13 (91)
62 cd04404 RhoGAP-p50rhoGAP RhoGA 20.3 2.1E+02 0.0046 20.6 4.2 40 59-99 24-63 (195)
63 PRK06582 coproporphyrinogen II 20.2 2.4E+02 0.0052 23.0 4.9 47 36-90 63-109 (390)
64 PF11324 DUF3126: Protein of u 20.2 1.3E+02 0.0029 19.2 2.7 35 8-44 2-37 (63)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=233.19 Aligned_cols=95 Identities=46% Similarity=0.825 Sum_probs=86.1
Q ss_pred CCcc----cchhHHHHHHHhhhhhhhccCC----CCccCCCCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhh
Q 039906 1 MGIR----LPGFFLAKQILRQSVLNAEKGA----STSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEF 72 (100)
Q Consensus 1 m~~~----~~~i~~~k~~l~r~~~~~~~~~----~~~~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEf 72 (100)
|+|+ |..+.++|++|+||.|.+++++ ..+.+||+||||||||+++ +||+||++|||||+|++||++|||||
T Consensus 1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~-~RfvVp~~~L~hP~F~~LL~~aeeEf 79 (104)
T PLN03090 1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENR-SRYIVPISFLTHPEFQSLLQQAEEEF 79 (104)
T ss_pred CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCC-EEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence 5554 4457899999999999988643 3677899999999999987 99999999999999999999999999
Q ss_pred CCccCCCceeeeCcHHHHHHHHHHh
Q 039906 73 GFNHSMGGLTIPCREDTFTDITSQL 97 (100)
Q Consensus 73 G~~~~~G~L~IPC~~~~Fe~vl~~l 97 (100)
||+|+ |+|+|||+++.|++++|+|
T Consensus 80 Gf~~~-G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 80 GFDHD-MGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred CCCCC-CcEEEeCCHHHHHHHHHHh
Confidence 99998 9999999999999999998
No 2
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=227.95 Aligned_cols=96 Identities=54% Similarity=0.917 Sum_probs=84.4
Q ss_pred CCcccchhHHH-HHHHhhhhhhhcc--CCCCccCCCCceEEEEecCc---ceeEEEEeccccCcHHHHHHHHhHHHhhCC
Q 039906 1 MGIRLPGFFLA-KQILRQSVLNAEK--GASTSLDVPKGFLAVYVGVT---QMKRFLIPVSYLNQPLFQELLSRVEEEFGF 74 (100)
Q Consensus 1 m~~~~~~i~~~-k~~l~r~~~~~~~--~~~~~~~vpkG~~aVyVG~e---~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~ 74 (100)
||++++.|... ||+|+|++...++ +++.+.+|||||||||||++ ..+|||||++|||||.|++||++|||||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf 80 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF 80 (105)
T ss_pred CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence 99999999955 9999999944332 24567899999999999983 239999999999999999999999999999
Q ss_pred ccCCCceeeeCcHHHHHHHHHH
Q 039906 75 NHSMGGLTIPCREDTFTDITSQ 96 (100)
Q Consensus 75 ~~~~G~L~IPC~~~~Fe~vl~~ 96 (100)
+|++|+|+|||+++.|+++++.
T Consensus 81 ~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 81 NHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCEEeeCCHHHHHHHHHh
Confidence 9866999999999999999864
No 3
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=3e-37 Score=211.52 Aligned_cols=96 Identities=47% Similarity=0.763 Sum_probs=79.1
Q ss_pred CCcccchhHHHHHHHhhhhhhhccC----CCCccCCCCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCcc
Q 039906 1 MGIRLPGFFLAKQILRQSVLNAEKG----ASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNH 76 (100)
Q Consensus 1 m~~~~~~i~~~k~~l~r~~~~~~~~----~~~~~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~ 76 (100)
|-.++.++...++..+++....... ++...++|+||||||||+++ +||+||++|||||+|++||++|||||||++
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~~-~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~ 79 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEER-RRFVVPVSYLNHPLFQELLEQAEEEFGFDQ 79 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCccc-eEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence 4455666666666555544433211 22348899999999999987 999999999999999999999999999999
Q ss_pred CCCceeeeCcHHHHHHHHHHhh
Q 039906 77 SMGGLTIPCREDTFTDITSQLI 98 (100)
Q Consensus 77 ~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
+ |+|+|||+++.|++++|+|+
T Consensus 80 ~-G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 80 D-GPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred C-CcEEeeCCHHHHHHHHHHhC
Confidence 7 99999999999999999985
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=5.2e-35 Score=203.59 Aligned_cols=70 Identities=61% Similarity=1.093 Sum_probs=64.2
Q ss_pred CCccCCCCceEEEEecCc-ceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeeeCcHHHHHHHHHH
Q 039906 27 STSLDVPKGFLAVYVGVT-QMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQ 96 (100)
Q Consensus 27 ~~~~~vpkG~~aVyVG~e-~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~ 96 (100)
..+.+|||||||||||++ ..+||+||++|||||+|++||++|||||||++++|+|+|||+++.|+++++.
T Consensus 34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS 104 (108)
T ss_pred CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence 355789999999999983 3499999999999999999999999999999866999999999999999985
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=86.33 E-value=0.98 Score=29.03 Aligned_cols=57 Identities=25% Similarity=0.187 Sum_probs=41.3
Q ss_pred EEecCcceeEEEEeccccC-cH--HHHHHHHhHHHhhCCccCCCceeeeCcHHHHHHHHHHhhc
Q 039906 39 VYVGVTQMKRFLIPVSYLN-QP--LFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIR 99 (100)
Q Consensus 39 VyVG~e~~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (100)
+=||. ++|.++.+.|. +| .|..+++.......-+ +.|.+-|-++...|++||.-+..
T Consensus 3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~-~~~~~fiDRdp~~F~~IL~ylr~ 62 (94)
T PF02214_consen 3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDYDD-DDGEYFIDRDPELFEYILNYLRT 62 (94)
T ss_dssp EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEET-TTTEEEESS-HHHHHHHHHHHHH
T ss_pred EEECC---EEEEEcHHHHhhCCCChhhhHHhhccccccCC-ccceEEeccChhhhhHHHHHHhh
Confidence 45676 78999998887 54 7888888653222222 34999999999999999988764
No 6
>PRK02899 adaptor protein; Provisional
Probab=84.65 E-value=0.88 Score=34.32 Aligned_cols=24 Identities=25% Similarity=0.760 Sum_probs=20.8
Q ss_pred HHHHHHHHhHHHhhCCccCCCceee
Q 039906 59 PLFQELLSRVEEEFGFNHSMGGLTI 83 (100)
Q Consensus 59 P~F~~LL~~aeeEfG~~~~~G~L~I 83 (100)
-+|.++|++|..|+||..+ |||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~-~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFEAD-GPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcccC-CeEEE
Confidence 4677779999999999986 99986
No 7
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=83.06 E-value=6.3 Score=24.47 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=38.3
Q ss_pred EecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCc----------cCCCceeeeCcHHHHHHHHHHhh
Q 039906 40 YVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFN----------HSMGGLTIPCREDTFTDITSQLI 98 (100)
Q Consensus 40 yVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
+-|++. +||.||- ...|.+|..+..+-|+.. .++..++|.|+ +++...+.+..
T Consensus 7 ~~~~~~-~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd-~Dl~~a~~~~~ 69 (81)
T smart00666 7 RYGGET-RRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSD-EDLEEAIEEYD 69 (81)
T ss_pred EECCEE-EEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCH-HHHHHHHHHHH
Confidence 336665 8999986 778999999999999874 12247888887 46666665543
No 8
>PRK02315 adaptor protein; Provisional
Probab=78.90 E-value=1.6 Score=33.59 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.2
Q ss_pred cHHHHHHHHhHHHhhCCccCCCceee
Q 039906 58 QPLFQELLSRVEEEFGFNHSMGGLTI 83 (100)
Q Consensus 58 hP~F~~LL~~aeeEfG~~~~~G~L~I 83 (100)
+-.|.++|++|..|+||..+ |||+|
T Consensus 38 e~fF~~mm~Ea~~e~~F~~~-~pl~~ 62 (233)
T PRK02315 38 EEFFYSMMDEVDEEDDFADE-GPLWF 62 (233)
T ss_pred HHHHHHHHHHhccccCcccC-CeEEE
Confidence 35799999999999999985 99986
No 9
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=71.95 E-value=1.2 Score=33.37 Aligned_cols=25 Identities=36% Similarity=0.729 Sum_probs=0.0
Q ss_pred cHHHHHHHHhHHHhhCCccCCCceee
Q 039906 58 QPLFQELLSRVEEEFGFNHSMGGLTI 83 (100)
Q Consensus 58 hP~F~~LL~~aeeEfG~~~~~G~L~I 83 (100)
+-.|.++|++|.+|+||..+ |+|++
T Consensus 38 e~fF~~ileea~~e~~F~~~-~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFEND-GPLTF 62 (220)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHhccccCcccC-CeEEE
Confidence 45799999999999999985 98875
No 10
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=64.80 E-value=26 Score=23.68 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=37.6
Q ss_pred EEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccC------------CCceeeeCcHHHHHHHHHHhh
Q 039906 38 AVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHS------------MGGLTIPCREDTFTDITSQLI 98 (100)
Q Consensus 38 aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~------------~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
.=|||.+. +-..|+-+ ..|.+|..+..+.++.... ++-+.|.||. +..++++..+
T Consensus 17 l~Y~GG~t-r~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~De-Dl~~M~~e~~ 83 (97)
T cd06410 17 LRYVGGET-RIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDE-DLKNMMEEYD 83 (97)
T ss_pred EEEcCCce-EEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcH-HHHHHHHhhc
Confidence 46999985 77777766 4677788888888877651 2577788885 4555555443
No 11
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=51.47 E-value=8 Score=22.06 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=15.3
Q ss_pred ccCcHHHHHHHHhHHHhhC
Q 039906 55 YLNQPLFQELLSRVEEEFG 73 (100)
Q Consensus 55 yL~hP~F~~LL~~aeeEfG 73 (100)
||+.-.|+++..++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 12
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=51.46 E-value=54 Score=19.96 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=38.9
Q ss_pred EEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCc----------cCCCceeeeCcHHHHHHHHHHhh
Q 039906 39 VYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFN----------HSMGGLTIPCREDTFTDITSQLI 98 (100)
Q Consensus 39 VyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
++-+++. +||.+|. .++.|.+|..+-++.|++. .++-.++|.++ +.|+..+....
T Consensus 5 ~~~~~~~-~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~ 69 (81)
T cd05992 5 VKYGGEI-RRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEAR 69 (81)
T ss_pred EEecCCC-EEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHh
Confidence 4445554 8999998 8889999999999999885 12235666665 56777666543
No 13
>smart00153 VHP Villin headpiece domain.
Probab=49.94 E-value=9.7 Score=21.63 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=17.1
Q ss_pred ccCcHHHHHHHHhHHHhhC
Q 039906 55 YLNQPLFQELLSRVEEEFG 73 (100)
Q Consensus 55 yL~hP~F~~LL~~aeeEfG 73 (100)
||+.-.|+.++.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 14
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=48.53 E-value=22 Score=24.37 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=24.6
Q ss_pred eEEE-Eecccc---CcHHHHHHHHhHHHhhCCccCCCceeeeCcHHHHHHHHHH
Q 039906 47 KRFL-IPVSYL---NQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQ 96 (100)
Q Consensus 47 ~Rfv-Vp~~yL---~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~ 96 (100)
.=|| +|-..+ .-..|.+||+.|||.+|.++ -.+.++=+-.....++..
T Consensus 25 ~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Llr~ 76 (108)
T PF02100_consen 25 TLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLLRT 76 (108)
T ss_dssp EEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHHHH
T ss_pred EEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhhhh
Confidence 4455 454433 44689999999999999875 467776555555555543
No 15
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=46.54 E-value=69 Score=20.70 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=34.3
Q ss_pred cHHHHHHHHhHHHhhCCccCCCceeeeCcHHHHHHHHHHh
Q 039906 58 QPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL 97 (100)
Q Consensus 58 hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l 97 (100)
.|.=+++|+..-..||+.-++|.|.+.++.+.|-.....+
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~l 83 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHRL 83 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHHH
Confidence 6777899999999999998889999999999887665543
No 16
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=44.55 E-value=20 Score=23.08 Aligned_cols=16 Identities=44% Similarity=0.781 Sum_probs=15.0
Q ss_pred HHHHHHHhHHHhhCCc
Q 039906 60 LFQELLSRVEEEFGFN 75 (100)
Q Consensus 60 ~F~~LL~~aeeEfG~~ 75 (100)
.+++||+.|++.||+.
T Consensus 27 SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 27 SLEELLKIASEKFGFS 42 (69)
T ss_pred cHHHHHHHHHHHhCCC
Confidence 6899999999999996
No 17
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=43.34 E-value=81 Score=19.68 Aligned_cols=54 Identities=22% Similarity=0.484 Sum_probs=37.4
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCC--ceeee-CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMG--GLTIP-CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G--~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||+ . ++|-++-..| ..|.|+.+++.. +.... + .+.++ |+.+.|+.+++-+
T Consensus 13 ~~i~v~d-~-~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~~l~~~ 71 (111)
T PF00651_consen 13 VTIRVGD-G-KTFYVHKNILAARSPYFRNLFEGS----KFKES-TVPEISLPDVSPEAFEAFLEYM 71 (111)
T ss_dssp EEEEETT-T-EEEEE-HHHHHHHBHHHHHHHTTT----TSTTS-SEEEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECC-C-EEEeechhhhhccchhhhhccccc----ccccc-cccccccccccccccccccccc
Confidence 4566776 3 7899988887 569999999988 21222 3 35545 8889999988755
No 18
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=41.80 E-value=1.2e+02 Score=23.96 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=43.3
Q ss_pred CceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccC--------------CCceeeeCcHHHHHHHHHHhh
Q 039906 34 KGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHS--------------MGGLTIPCREDTFTDITSQLI 98 (100)
Q Consensus 34 kG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~--------------~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
.|++.|.-..+. ..+.|-++.-.-+....++.+...-|+.+.+ .-+|++|...+.||.+++.|-
T Consensus 45 ~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aIi 122 (283)
T PRK10308 45 RGVVTVIPDIAR-HTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAIL 122 (283)
T ss_pred cEEEEEEEcCCC-ceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHH
Confidence 455555554443 5566666553345556778887777777765 245899999999999988763
No 19
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=41.33 E-value=83 Score=19.23 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=34.5
Q ss_pred EEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCc----------cCCCceeeeCcHHHHHHHHHHh
Q 039906 39 VYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFN----------HSMGGLTIPCREDTFTDITSQL 97 (100)
Q Consensus 39 VyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l 97 (100)
++-+++. +| .+..-..+.|.+|..+.++.||.. .++-.++|.++ +.++..+...
T Consensus 6 ~~~~~~~-~~---~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd-~Dl~~a~~~~ 69 (84)
T PF00564_consen 6 VRYGGDI-RR---IISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSD-EDLQEAIEQA 69 (84)
T ss_dssp EEETTEE-EE---EEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSH-HHHHHHHHHH
T ss_pred EEECCee-EE---EEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCH-HHHHHHHHHH
Confidence 4445553 45 333345579999999999999983 23236777777 5566655544
No 20
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=40.60 E-value=4.9 Score=27.39 Aligned_cols=11 Identities=55% Similarity=0.963 Sum_probs=8.0
Q ss_pred cccCcHHHHHH
Q 039906 54 SYLNQPLFQEL 64 (100)
Q Consensus 54 ~yL~hP~F~~L 64 (100)
.|||||.|.-|
T Consensus 4 ~YLNHPtFGlL 14 (88)
T PF12058_consen 4 TYLNHPTFGLL 14 (88)
T ss_dssp -EEEETTTEEE
T ss_pred ccccCCccchh
Confidence 58999988644
No 21
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=35.44 E-value=16 Score=30.46 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=18.5
Q ss_pred ccCCCCceEEEEecCc-ceeEEEEec
Q 039906 29 SLDVPKGFLAVYVGVT-QMKRFLIPV 53 (100)
Q Consensus 29 ~~~vpkG~~aVyVG~e-~~~RfvVp~ 53 (100)
.--+|.|.|++|||-+ ....|.||+
T Consensus 87 ~I~IP~gSfv~Y~G~d~ie~~~~vP~ 112 (361)
T COG1759 87 AIFIPHGSFVAYVGYDGIENEFEVPM 112 (361)
T ss_pred eEEecCCceEEEecchhhhhcccCcc
Confidence 3468999999999954 225677775
No 22
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=32.16 E-value=60 Score=26.69 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=37.5
Q ss_pred eeEEEEeccccC--cHHHHHHHHh---HHHhhCCccCCCceeeeCcHHHHHHHHHHhhc
Q 039906 46 MKRFLIPVSYLN--QPLFQELLSR---VEEEFGFNHSMGGLTIPCREDTFTDITSQLIR 99 (100)
Q Consensus 46 ~~RfvVp~~yL~--hP~F~~LL~~---aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (100)
.+=|..|.+.|- ...|++.|.. +.++.. + =.|.+-||+..|+.++.-+++
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~---~-idisVhCDv~iF~WLm~yv~~ 67 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE---E-IDISVHCDVHIFEWLMRYVKG 67 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCC---C-cceEEecChhHHHHHHHHhhc
Confidence 477999988884 5789999976 444433 2 458889999999999986653
No 23
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.12 E-value=2.6e+02 Score=22.38 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=40.6
Q ss_pred CCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 33 PKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...++||+.. ..-.....-.+++||.|++.+ .+.+| ++.+.|...+..|+.
T Consensus 32 ~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~el~~~I~~lN~ 87 (284)
T PRK14193 32 TPGLGTVLVGDDP-----------GSQAYVRGKHRDCAEVGITSI--RRDLPADATQEELNAVIDELNA 87 (284)
T ss_pred CceEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 4488889999853 123455667789999999865 67788 888889998888764
No 24
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=29.90 E-value=37 Score=26.71 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.8
Q ss_pred CcHHHHHHHHhHHHhhCCccCCCceeee
Q 039906 57 NQPLFQELLSRVEEEFGFNHSMGGLTIP 84 (100)
Q Consensus 57 ~hP~F~~LL~~aeeEfG~~~~~G~L~IP 84 (100)
.|-.|-++++.+.+|-+|..+ |+|+|-
T Consensus 37 ~EE~F~~mMdEl~~ee~F~~~-GpL~iq 63 (224)
T COG4862 37 TEELFYEMMDELNLEEDFKDE-GPLWIQ 63 (224)
T ss_pred HHHHHHHHHHhcCCccccccC-CceEEE
Confidence 467899999999999999987 999984
No 25
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=29.51 E-value=16 Score=30.49 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=18.5
Q ss_pred ccCCCCceEEEEecCcce-eEEEEe
Q 039906 29 SLDVPKGFLAVYVGVTQM-KRFLIP 52 (100)
Q Consensus 29 ~~~vpkG~~aVyVG~e~~-~RfvVp 52 (100)
.--+|.|.|++|||-+.- ..|-||
T Consensus 87 ~i~iPh~sf~~y~g~~~ie~~~~vp 111 (366)
T PRK13277 87 AIFVPNRSFAVYVGYDAIENEFKVP 111 (366)
T ss_pred eEEecCCCeEEEecHHHHhhcCCCC
Confidence 346899999999997642 368888
No 26
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=29.47 E-value=61 Score=24.07 Aligned_cols=36 Identities=22% Similarity=0.451 Sum_probs=29.0
Q ss_pred ceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccC
Q 039906 35 GFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHS 77 (100)
Q Consensus 35 G~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~ 77 (100)
|.++++||-+-... .+-|...+|++...+|+|.+.+
T Consensus 1 g~lvlFiGAG~S~~-------~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAGVSVS-------SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCccccc-------cCCCChHHHHHHHHHHcCCccc
Confidence 67899999874222 5789999999999999987654
No 27
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.39 E-value=2.3e+02 Score=22.89 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=39.7
Q ss_pred CCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 33 PKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||+.. ..-....--.+++||+|++.+ .+.+| ++.+.|.+.+..|+.
T Consensus 32 ~p~LaiI~vgdd~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (297)
T PRK14186 32 PPGLAVLRVGDDP-----------ASAVYVRNKEKACARVGIASF--GKHLPADTSQAEVEALIAQLNQ 87 (297)
T ss_pred CceEEEEEeCCCh-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 4488999999852 123445566788999999865 56676 778889999888864
No 28
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.05 E-value=2.5e+02 Score=22.45 Aligned_cols=53 Identities=11% Similarity=0.264 Sum_probs=38.9
Q ss_pred CceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 34 KGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 34 kG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
.+...|.||+.. ..-.....-.+++|+.|+.-+ .+.+| |+.+.+...+..|+.
T Consensus 33 P~Laii~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (278)
T PRK14172 33 PKIASILVGNDG-----------GSIYYMNNQEKVANSLGIDFK--KIKLDESISEEDLINEIEELNK 87 (278)
T ss_pred ceEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 378889999862 122334456689999999865 67888 888888888888764
No 29
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=28.82 E-value=1.2e+02 Score=22.09 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=30.8
Q ss_pred HHHHHHHHhHHHhhCCccCCCceeeeCcHHHHHHHHHHhhc
Q 039906 59 PLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIR 99 (100)
Q Consensus 59 P~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (100)
|.|.+..-..-++.|.+.+ |.-++|.+...-+++...+++
T Consensus 19 P~iv~~~~~~l~~~g~~~e-GIFR~~g~~~~i~~l~~~l~~ 58 (196)
T cd04395 19 PLIVEVCCNIVEARGLETV-GIYRVPGNNAAISALQEELNR 58 (196)
T ss_pred ChHHHHHHHHHHHcCCCCc-cceeCCCcHHHHHHHHHHHhc
Confidence 5555555556678899887 999999998888888877764
No 30
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=27.67 E-value=88 Score=19.69 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=19.5
Q ss_pred eEEEEeccccCcHHHHHHHHhHHHhhCCccCCCce
Q 039906 47 KRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGL 81 (100)
Q Consensus 47 ~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L 81 (100)
+|+.|++.= .-.+.++|++|-+-||++.+.+.|
T Consensus 7 rr~~vkvtp--~~~l~~VL~eac~k~~l~~~~~~L 39 (65)
T PF11470_consen 7 RRFKVKVTP--NTTLNQVLEEACKKFGLDPSSYDL 39 (65)
T ss_dssp -EEEE---T--TSBHHHHHHHHHHHTT--GGG-EE
T ss_pred cEEEEEECC--CCCHHHHHHHHHHHcCCCccceEE
Confidence 677777653 336789999999999998754444
No 31
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=27.07 E-value=1.4e+02 Score=18.68 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=17.4
Q ss_pred eEEEEecCcceeEEEEecccc
Q 039906 36 FLAVYVGVTQMKRFLIPVSYL 56 (100)
Q Consensus 36 ~~aVyVG~e~~~RfvVp~~yL 56 (100)
.|+++|+... -++.|..+-|
T Consensus 18 ~F~a~~~g~~-i~C~Is~~aL 37 (83)
T PF07369_consen 18 RFPAQVDGMQ-IRCAISAEAL 37 (83)
T ss_dssp EEEEEETTEE-EEEEEEHHHH
T ss_pred EEEEEECCEE-EEEEEeHHHH
Confidence 6899998876 9999999877
No 32
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=26.83 E-value=52 Score=28.60 Aligned_cols=40 Identities=33% Similarity=0.488 Sum_probs=34.5
Q ss_pred CceEEEEecCcceeEEEEec-----cccCcHH-HHHHHHhHHHhhCC
Q 039906 34 KGFLAVYVGVTQMKRFLIPV-----SYLNQPL-FQELLSRVEEEFGF 74 (100)
Q Consensus 34 kG~~aVyVG~e~~~RfvVp~-----~yL~hP~-F~~LL~~aeeEfG~ 74 (100)
||.+|+++-.++ .||.|=+ .|+|-+. -++||++=..|||.
T Consensus 96 kg~lP~LT~~~k-GRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~V 141 (487)
T PF12062_consen 96 KGDLPVLTDNDK-GRYSLIIFENLLKYLNLDSWNRELLDKYCREYGV 141 (487)
T ss_pred CCCCCccccCCC-CcEEEEEehhHHHHcCChHHHHHHHHHHhHccCc
Confidence 689999996665 7888776 8999998 89999999999974
No 33
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.75 E-value=3.1e+02 Score=21.97 Aligned_cols=55 Identities=16% Similarity=0.281 Sum_probs=40.0
Q ss_pred CCCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 32 VPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 32 vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
.+.+...|.||+.. ..-....--.+++|++|++.+ .+.+| ++.+.|...+..|+.
T Consensus 31 ~~p~La~i~vg~~~-----------~s~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN~ 87 (296)
T PRK14188 31 VTPGLAVVLVGEDP-----------ASQVYVRSKGKQTKEAGMASF--EHKLPADTSQAELLALIARLNA 87 (296)
T ss_pred CCCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999852 122345566788999999864 56776 788889988888764
No 34
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=25.70 E-value=2.1e+02 Score=19.41 Aligned_cols=56 Identities=13% Similarity=0.284 Sum_probs=35.1
Q ss_pred CCCCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 31 DVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 31 ~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
..+.+...|+||+.. ..-.......++++++|..-. .+.+| ++.+.|...+..++.
T Consensus 27 ~~~P~Laii~vg~d~-----------~S~~Y~~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 27 GITPKLAIILVGDDP-----------ASISYVRSKQKAAEKLGIEFE--LIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp T---EEEEEEES--H-----------HHHHHHHHHHHHHHHHT-EEE--EEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCh-----------hHHHHHHHHHHHHHHcCCceE--EEECCCCcCHHHHHHHHHHHhC
Confidence 456789999999852 123456677789999999865 56776 566678777777753
No 35
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.69 E-value=2e+02 Score=23.81 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=38.1
Q ss_pred CceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeeeCcHHHH
Q 039906 34 KGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTF 90 (100)
Q Consensus 34 kG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F 90 (100)
.+...+|+|.+. -..|+.+.+.+|++...+.|++..+ ..+++-|+...+
T Consensus 102 ~~v~~i~fgGGT-------Ps~l~~~~l~~ll~~i~~~~~~~~~-~e~tie~~p~~l 150 (453)
T PRK13347 102 RRVSQLHWGGGT-------PTILNPDQFERLMAALRDAFDFAPE-AEIAVEIDPRTV 150 (453)
T ss_pred CeEEEEEEcCcc-------cccCCHHHHHHHHHHHHHhCCCCCC-ceEEEEeccccC
Confidence 467789998864 4678999999999999999988754 567777775543
No 36
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.62 E-value=3.5e+02 Score=21.63 Aligned_cols=54 Identities=15% Similarity=0.322 Sum_probs=40.1
Q ss_pred CCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 33 PKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||+.. ..-....--.+++|+.|+..+ .+.+| ++.+.|...+..|+.
T Consensus 32 ~P~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 87 (284)
T PRK14179 32 VPGLVVILVGDNP-----------ASQVYVRNKERSALAAGFKSE--VVRLPETISQEELLDLIERYNQ 87 (284)
T ss_pred CceEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3488899999852 122445556688999999865 67888 778889998888864
No 37
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=25.42 E-value=69 Score=24.24 Aligned_cols=38 Identities=26% Similarity=0.575 Sum_probs=29.6
Q ss_pred eEEEEeccccCc-H-HHHHHHHhHHHhhCCccCCCceeee
Q 039906 47 KRFLIPVSYLNQ-P-LFQELLSRVEEEFGFNHSMGGLTIP 84 (100)
Q Consensus 47 ~RfvVp~~yL~h-P-~F~~LL~~aeeEfG~~~~~G~L~IP 84 (100)
=+|.+|++||.. | .|++|+...++.+.+.|-.+++.+-
T Consensus 25 l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~~ 64 (208)
T PF11876_consen 25 LSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAFN 64 (208)
T ss_pred EEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEEe
Confidence 689999999987 2 4999999999988776654555554
No 38
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=25.05 E-value=83 Score=23.79 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=29.0
Q ss_pred eEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeeeCcHH
Q 039906 47 KRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCRED 88 (100)
Q Consensus 47 ~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~ 88 (100)
.+-++..+-.. -.++.|.+++++-.|...++-.+++||+..
T Consensus 33 ~g~I~d~~~~~-~~l~~l~~~a~~~~g~~~~~vvisVP~~~~ 73 (239)
T TIGR02529 33 DGIVVDFLGAV-EIVRRLKDTLEQKLGIELTHAATAIPPGTI 73 (239)
T ss_pred CCeEEEhHHHH-HHHHHHHHHHHHHhCCCcCcEEEEECCCCC
Confidence 44555544433 367888888888888876667899998764
No 39
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.83 E-value=2.4e+02 Score=22.60 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=41.2
Q ss_pred CCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 33 PKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||+.. ..-....--.++++|.|+..+ .+.+| ++.+.|+..+..|+.
T Consensus 32 ~p~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 32 QPGLAVILVGDNP-----------ASQVYVRNKVKACEDNGFHSL--KDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCeEEEEEeCCCc-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 4488999999852 233455666789999999865 67888 778899999988864
No 40
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=24.74 E-value=1.5e+02 Score=24.83 Aligned_cols=44 Identities=32% Similarity=0.520 Sum_probs=34.5
Q ss_pred CCCCceEEEEecCc-------------------ceeEEEEecccc--CcHHHHHHHHhHHHhhCC
Q 039906 31 DVPKGFLAVYVGVT-------------------QMKRFLIPVSYL--NQPLFQELLSRVEEEFGF 74 (100)
Q Consensus 31 ~vpkG~~aVyVG~e-------------------~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~ 74 (100)
..+++-..+.||.. ...|++||++|= |.-..+++.+.+++-||-
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~ 244 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGA 244 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCc
Confidence 34578999999852 138999999996 467888888888888884
No 41
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=24.73 E-value=81 Score=20.93 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=18.2
Q ss_pred CceeeeCcHHHHHHHHHHhh
Q 039906 79 GGLTIPCREDTFTDITSQLI 98 (100)
Q Consensus 79 G~L~IPC~~~~Fe~vl~~l~ 98 (100)
..+.+-|+++.|.+++..|+
T Consensus 65 ~~i~f~c~~e~L~~Li~~Lk 84 (95)
T cd04751 65 PDINFTCTLEQLQDLVNKLK 84 (95)
T ss_pred ceEEEEeCHHHHHHHHHHHH
Confidence 48999999999999999875
No 42
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.69 E-value=3.5e+02 Score=21.71 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=40.0
Q ss_pred CCCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 32 VPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 32 vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
.+.+...+.||+.. ..-....--.++++|+|+..+ .+.+| ++.+.|...+..|+.
T Consensus 30 ~~P~Laii~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 30 KKPGLAVVLVGDNQ-----------ASRTYVRNKQKRTEEAGMKSV--LIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred CCCeEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34589999999852 123455666788999999865 57777 667788888887764
No 43
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.53 E-value=2.5e+02 Score=22.10 Aligned_cols=54 Identities=7% Similarity=0.137 Sum_probs=40.1
Q ss_pred CCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceee--eCcHHHHHHHHHHhhc
Q 039906 33 PKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTI--PCREDTFTDITSQLIR 99 (100)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~I--PC~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||+.. ..-.....-.++.++.|.+.. .+.+ .|+.+.|+.++..|+.
T Consensus 33 ~p~L~~i~vg~~~-----------~s~~Y~~~~~~~~~~~Gi~~~--~~~l~~~~~~~~l~~~i~~Ln~ 88 (283)
T PRK14192 33 TPILATILVGDDP-----------ASATYVRMKGNACRRVGMDSL--KVELPQETTTEQLLAKIEELNA 88 (283)
T ss_pred CCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 4489999999852 223456677788999998764 5667 4888889998888764
No 44
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=24.18 E-value=65 Score=22.38 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.5
Q ss_pred eEEEEecCcceeEEEEeccccCc
Q 039906 36 FLAVYVGVTQMKRFLIPVSYLNQ 58 (100)
Q Consensus 36 ~~aVyVG~e~~~RfvVp~~yL~h 58 (100)
-+.||+|... ++..|..++|.+
T Consensus 72 ~V~v~~G~k~-K~liv~peHLk~ 93 (98)
T COG2139 72 KVEVYDGNKE-KTLIVRPEHLKP 93 (98)
T ss_pred EEEEecCCce-EEEEeCHHHccc
Confidence 3678888876 889998888875
No 45
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=23.93 E-value=2.1e+02 Score=18.51 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=32.8
Q ss_pred EEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCcc-----------CCCceeeeCcHHH
Q 039906 39 VYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNH-----------SMGGLTIPCREDT 89 (100)
Q Consensus 39 VyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-----------~~G~L~IPC~~~~ 89 (100)
+..|++. .||-+|.+- -|++|.++-++-|+++. ++..+.|.|+.+.
T Consensus 5 ~~~~~d~-~r~~l~~~~----~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL 61 (82)
T cd06407 5 ATYGEEK-IRFRLPPSW----GFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADL 61 (82)
T ss_pred EEeCCeE-EEEEcCCCC----CHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHH
Confidence 3446664 899988744 68999999888888753 2356778888554
No 46
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=23.67 E-value=55 Score=18.55 Aligned_cols=22 Identities=32% Similarity=0.729 Sum_probs=16.3
Q ss_pred HhHHHhhCCc--cCCCceeeeCcH
Q 039906 66 SRVEEEFGFN--HSMGGLTIPCRE 87 (100)
Q Consensus 66 ~~aeeEfG~~--~~~G~L~IPC~~ 87 (100)
++.+.++|.. |+||....||+.
T Consensus 8 e~~A~~~GC~G~H~mg~~WMPC~~ 31 (34)
T PF12518_consen 8 EKRAKELGCKGAHKMGDKWMPCSN 31 (34)
T ss_pred HHHHHHcCCcchhhccCccccCcc
Confidence 3455678876 558999999974
No 47
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=23.49 E-value=1.7e+02 Score=24.15 Aligned_cols=64 Identities=22% Similarity=0.328 Sum_probs=42.7
Q ss_pred CCCCceEEEEecCcc-------------------eeEEEEeccc--cCcHHHHHHHHhHHHhhCCccCCCceeeeCcHHH
Q 039906 31 DVPKGFLAVYVGVTQ-------------------MKRFLIPVSY--LNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDT 89 (100)
Q Consensus 31 ~vpkG~~aVyVG~e~-------------------~~RfvVp~~y--L~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~ 89 (100)
..+++.+.+.||... .-|+.||.+| =|.-..++..+.+.+-||-+ -+.+-=+--.
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~----~~~~L~e~l~ 216 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE----NFQILTEKLP 216 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc----cEEehhhhCC
Confidence 346788999998631 2599999999 67667777777778888843 2444434444
Q ss_pred HHHHHHHhh
Q 039906 90 FTDITSQLI 98 (100)
Q Consensus 90 Fe~vl~~l~ 98 (100)
|++-++.|+
T Consensus 217 f~eYl~lL~ 225 (322)
T PRK02797 217 FDDYLALLR 225 (322)
T ss_pred HHHHHHHHH
Confidence 555555444
No 48
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.38 E-value=2.6e+02 Score=22.42 Aligned_cols=53 Identities=13% Similarity=0.254 Sum_probs=39.6
Q ss_pred CceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 34 KGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 34 kG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
.+...|.||+.. ..-....--.+++||+|++.+ .+.+| ++.+.|...+..|+.
T Consensus 30 P~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 84 (287)
T PRK14173 30 PHLRVVRLGEDP-----------ASVSYVRLKDRQAKALGLRSQ--VEVLPESTSQEELLELIARLNA 84 (287)
T ss_pred CcEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 478999999852 122344556688999999865 67888 778889999888864
No 49
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=23.12 E-value=81 Score=24.81 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=28.3
Q ss_pred CCCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCc
Q 039906 32 VPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFN 75 (100)
Q Consensus 32 vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~ 75 (100)
.+...+-++-|.+. .+--.=-+|.++|.|+++++++++-.|++
T Consensus 36 ~~~~~a~lFpGQGs-q~~gm~~~~~~~p~~~~~~~~~~~~lg~~ 78 (343)
T PLN02752 36 YKPTTAFLFPGQGA-QAVGMGKEAAEVPAAKALFDKASEILGYD 78 (343)
T ss_pred CCCCEEEEECCCCc-chhhHHHHHHhCHHHHHHHHHHHHHhCCC
Confidence 34445556667653 22112223778999999999999988875
No 50
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=22.62 E-value=92 Score=24.00 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=17.1
Q ss_pred eeeeCcHHHHHHHHHHhhc
Q 039906 81 LTIPCREDTFTDITSQLIR 99 (100)
Q Consensus 81 L~IPC~~~~Fe~vl~~l~~ 99 (100)
+.|.|+..+|..|++-|.+
T Consensus 105 vIiTcEERvfD~Vvedl~~ 123 (195)
T PF04722_consen 105 VIITCEERVFDQVVEDLNS 123 (195)
T ss_dssp EEEESSHHHHHHHHHHHHC
T ss_pred EEEEechHHHHHHHHHHHh
Confidence 8999999999999988764
No 51
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=21.80 E-value=1.5e+02 Score=19.22 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=18.0
Q ss_pred cCcHHHHHHH----HhHHHhhCCccCCCceee
Q 039906 56 LNQPLFQELL----SRVEEEFGFNHSMGGLTI 83 (100)
Q Consensus 56 L~hP~F~~LL----~~aeeEfG~~~~~G~L~I 83 (100)
-..|.|++.| ..+=+||||+-+ ..+.|
T Consensus 14 w~Dp~Fr~~Ll~DPraaL~e~G~~~P-~~~~i 44 (77)
T TIGR03793 14 WEDEAFKQALLTNPKEALEREGVQVP-AEVEV 44 (77)
T ss_pred HcCHHHHHHHHHCHHHHHHHhCCCCC-CceEE
Confidence 3578899866 344578899876 44443
No 52
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.78 E-value=2.9e+02 Score=22.15 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=40.1
Q ss_pred CCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 33 PKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
..+...|.||+.. ..-....--.++++|.|++.+ .+.+| ++.+.|...+..|+.
T Consensus 33 ~P~Laii~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~ 88 (285)
T PRK10792 33 APGLAVVLVGSDP-----------ASQVYVASKRKACEEVGFVSR--SYDLPETTSEAELLALIDELNA 88 (285)
T ss_pred CceEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3488889999852 122445566788999999864 67787 888899999888864
No 53
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=21.66 E-value=1.7e+02 Score=19.21 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=34.3
Q ss_pred CCceEEEEecCcc---eeEEEEeccccCcHHH---HHHHHhHHHhhCC
Q 039906 33 PKGFLAVYVGVTQ---MKRFLIPVSYLNQPLF---QELLSRVEEEFGF 74 (100)
Q Consensus 33 pkG~~aVyVG~e~---~~RfvVp~~yL~hP~F---~~LL~~aeeEfG~ 74 (100)
++-+...+.|+.. ..++-+...|+.|+.+ |.|+++|.|.|.-
T Consensus 28 ~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~~~~ek~~~~~k~ke~~~~ 75 (80)
T cd06080 28 KQKARVNFIGDNMQSEKKGIRVVKRWLKHFDCTEKQKLTNKAKESYEQ 75 (80)
T ss_pred CCEEEEEEeCCCCceeccchhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 6677788889861 3778888999999999 5899999999864
No 54
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=21.57 E-value=1.2e+02 Score=21.64 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.0
Q ss_pred CceEEEEecCcceeEEEEeccccCcHHHH
Q 039906 34 KGFLAVYVGVTQMKRFLIPVSYLNQPLFQ 62 (100)
Q Consensus 34 kG~~aVyVG~e~~~RfvVp~~yL~hP~F~ 62 (100)
++-|-||||++ +=|++--.|-+-|.|.
T Consensus 32 ~~~~fVyvG~~--rdYIl~~gfCSCp~~~ 58 (117)
T COG5431 32 KVKFFVYVGKE--RDYILEGGFCSCPDFL 58 (117)
T ss_pred eEEEEEEEccc--cceEEEcCcccCHHHH
Confidence 45589999998 5799999999999987
No 55
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=21.35 E-value=1.7e+02 Score=23.65 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=36.8
Q ss_pred ceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeeeCcHH
Q 039906 35 GFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCRED 88 (100)
Q Consensus 35 G~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~ 88 (100)
..=.||+|.+. .++|+...+.+|++...+.|.+..+ .-+++-|+.+
T Consensus 55 ~i~tiy~GGGT-------Ps~l~~~~L~~ll~~i~~~f~~~~~-~eit~E~~P~ 100 (380)
T PRK09057 55 TLTSIFFGGGT-------PSLMQPETVAALLDAIARLWPVADD-IEITLEANPT 100 (380)
T ss_pred CcCeEEeCCCc-------cccCCHHHHHHHHHHHHHhCCCCCC-ccEEEEECcC
Confidence 34589999875 3588889999999999999988764 5688877664
No 56
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.09 E-value=3.4e+02 Score=21.69 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=39.6
Q ss_pred CCCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 32 VPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 32 vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
.+.+...|.||+.. ..-.....-.+++|+.|++.+ .+.+| ++.+.|...+..|+.
T Consensus 25 ~~P~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 81 (279)
T PRK14178 25 LYPRLATVIVGDDP-----------ASQMYVRMKHRACERVGIGSV--GIELPGDATTRTVLERIRRLNE 81 (279)
T ss_pred CCCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34488999999852 122344556688999999865 57776 777788888888764
No 57
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=20.99 E-value=2.9e+02 Score=22.91 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=39.5
Q ss_pred CCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 33 PKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||+.. . .-....--.+++|+.|+..+ .+.+| ++.+.+...+..|+.
T Consensus 86 ~P~LaiIlvGddp-------a----S~~Yv~~k~K~a~~~GI~~~--~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 86 VPGLAVVLVGQQR-------D----SQTYVRNKIKACEETGIKSL--LAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred CCeEEEEEeCCCh-------H----HHHHHHHHHHHHHhcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3488899999862 1 11445566789999999875 57777 777888888888764
No 58
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.98 E-value=4.5e+02 Score=21.19 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=39.0
Q ss_pred CCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 33 PKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||+.. ..-.....-.+++++.|+..+ .+.+| ++.+.|...+..|+.
T Consensus 32 ~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~e~~l~~~I~~lN~ 87 (294)
T PRK14187 32 FPCLIVILVGDDP-----------ASQLYVRNKQRKAEMLGLRSE--TILLPSTISESSLIEKINELNN 87 (294)
T ss_pred CCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 4488999999852 123445566788999999865 57777 667788888887764
No 59
>PF06344 Parecho_VpG: Parechovirus Genome-linked protein; InterPro: IPR009407 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C)) []. This entry consists of the genome-linked protein Vpg type P3B.; GO: 0019015 viral genome
Probab=20.72 E-value=40 Score=17.00 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=9.0
Q ss_pred CccCCCCceEEE
Q 039906 28 TSLDVPKGFLAV 39 (100)
Q Consensus 28 ~~~~vpkG~~aV 39 (100)
-+..-|||.|||
T Consensus 7 lp~~kpkgtfpv 18 (20)
T PF06344_consen 7 LPVAKPKGTFPV 18 (20)
T ss_pred ccccccCCcccc
Confidence 345568999987
No 60
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.45 E-value=61 Score=28.78 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=16.2
Q ss_pred CCCceEEEEecCcc-eeEEEEe
Q 039906 32 VPKGFLAVYVGVTQ-MKRFLIP 52 (100)
Q Consensus 32 vpkG~~aVyVG~e~-~~RfvVp 52 (100)
.+-||.||++|+.- ..||+|-
T Consensus 62 ~kGGYHpV~IGD~F~~gRY~v~ 83 (590)
T KOG1290|consen 62 RKGGYHPVRIGDVFNGGRYHVQ 83 (590)
T ss_pred hcCCCceeeccccccCceEEEE
Confidence 56899999999952 2688774
No 61
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=20.45 E-value=75 Score=20.83 Aligned_cols=12 Identities=58% Similarity=0.913 Sum_probs=10.3
Q ss_pred cCcHHHHHHHHh
Q 039906 56 LNQPLFQELLSR 67 (100)
Q Consensus 56 L~hP~F~~LL~~ 67 (100)
++||.|++|.++
T Consensus 2 ~~~p~f~~L~r~ 13 (91)
T PF04341_consen 2 LRSPEFQELVRR 13 (91)
T ss_pred CCCHHHHHHHHH
Confidence 589999999875
No 62
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.31 E-value=2.1e+02 Score=20.64 Aligned_cols=40 Identities=5% Similarity=0.060 Sum_probs=29.1
Q ss_pred HHHHHHHHhHHHhhCCccCCCceeeeCcHHHHHHHHHHhhc
Q 039906 59 PLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIR 99 (100)
Q Consensus 59 P~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (100)
|.+...+-..=++.|.+.+ |..++|.+...-+.+...+++
T Consensus 24 P~il~~~i~~l~~~g~~~e-GIFR~~g~~~~i~~l~~~~~~ 63 (195)
T cd04404 24 PPVVRETVEYLQAHALTTE-GIFRRSANTQVVKEVQQKYNM 63 (195)
T ss_pred ChHHHHHHHHHHHcCCCCC-CeeeCCCcHHHHHHHHHHHhC
Confidence 4454433334345888887 999999999988888887764
No 63
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=20.20 E-value=2.4e+02 Score=23.03 Aligned_cols=47 Identities=11% Similarity=0.294 Sum_probs=37.4
Q ss_pred eEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeeeCcHHHH
Q 039906 36 FLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTF 90 (100)
Q Consensus 36 ~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F 90 (100)
.-.||+|.+. -++|+...+..|++...+.|++... ..+++-|+.+.+
T Consensus 63 i~tiy~GGGT-------Ps~l~~~~l~~ll~~i~~~~~~~~~-~eitiE~nP~~~ 109 (390)
T PRK06582 63 IKSIFFGGGT-------PSLMNPVIVEGIINKISNLAIIDNQ-TEITLETNPTSF 109 (390)
T ss_pred eeEEEECCCc-------cccCCHHHHHHHHHHHHHhCCCCCC-CEEEEEeCCCcC
Confidence 4589999875 3789999999999999998888754 568888776544
No 64
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=20.19 E-value=1.3e+02 Score=19.15 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=21.3
Q ss_pred hHHHHHHHhhhhhhhccCCCCccCCC-CceEEEEecCc
Q 039906 8 FFLAKQILRQSVLNAEKGASTSLDVP-KGFLAVYVGVT 44 (100)
Q Consensus 8 i~~~k~~l~r~~~~~~~~~~~~~~vp-kG~~aVyVG~e 44 (100)
|.|+..-|||........ ...... ....-||+|+|
T Consensus 2 i~klq~yLr~~f~n~~i~--v~~rpk~~dsaEV~~g~E 37 (63)
T PF11324_consen 2 IKKLQAYLRRTFGNPGIT--VKARPKKDDSAEVYIGDE 37 (63)
T ss_pred hHHHHHHHHHHhCCCceE--EEcCCCCCCceEEEeCCE
Confidence 567888888887543311 111122 34888999986
Done!