Query 039906
Match_columns 100
No_of_seqs 115 out of 654
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1und_A Advillin, P92; actin bi 62.7 2.5 8.4E-05 23.5 0.8 20 54-73 1-20 (37)
2 2al3_A TUG long isoform; TUG U 61.7 11 0.00037 24.7 4.0 45 35-82 9-53 (90)
3 2nz0_B Potassium voltage-gated 54.4 16 0.00055 25.1 4.1 62 33-99 33-95 (140)
4 1s1g_A Potassium voltage-gated 53.7 10 0.00034 25.5 2.9 62 33-99 11-73 (124)
5 1y74_B MLIN-2/CASK, peripheral 52.4 6.1 0.00021 22.4 1.4 20 54-73 26-49 (50)
6 2vpk_A Myoneurin; transcriptio 52.3 23 0.00077 22.0 4.3 50 37-97 25-79 (116)
7 1r29_A B-cell lymphoma 6 prote 48.6 22 0.00075 22.5 3.8 53 37-97 32-88 (127)
8 3ga1_A Nucleus accumbens-assoc 46.9 40 0.0014 21.4 4.9 50 37-97 36-89 (129)
9 3drz_A BTB/POZ domain-containi 45.1 57 0.0019 20.7 5.9 61 34-99 5-70 (107)
10 2xko_C PIPX, global nitrogen r 41.7 3 0.0001 27.5 -1.2 11 54-64 5-15 (89)
11 2if5_A Zinc finger and BTB dom 41.1 56 0.0019 20.2 4.8 54 37-97 28-84 (120)
12 1nn7_A Potassium channel KV4.2 40.0 8.2 0.00028 25.0 0.7 58 37-99 2-60 (105)
13 2vkp_A BTB/POZ domain-containi 39.3 53 0.0018 19.8 4.4 56 37-97 11-70 (109)
14 1yu8_X Villin; alpha helix, 3- 38.9 9.7 0.00033 23.6 0.8 20 54-73 31-50 (67)
15 1qzp_A Dematin; villin headpie 35.1 8.5 0.00029 23.8 0.1 20 54-73 32-51 (68)
16 1ujs_A Actin-binding LIM prote 33.3 13 0.00044 24.3 0.7 20 54-73 46-65 (88)
17 2k6m_S Supervillin; SVHP, HP, 33.2 11 0.00036 23.4 0.3 20 54-73 31-50 (67)
18 2lkt_A Retinoic acid receptor 31.8 27 0.00092 22.7 2.2 11 35-45 22-32 (125)
19 3b84_A Zinc finger and BTB dom 31.5 74 0.0025 19.8 4.3 50 37-97 27-79 (119)
20 3ohu_A Transcription regulator 30.1 52 0.0018 20.6 3.3 52 37-97 35-90 (125)
21 2ccq_A P97, peptide N-glycanas 29.8 49 0.0017 21.3 3.2 43 56-98 46-96 (99)
22 1pzq_A Erythronolide synthase; 29.4 33 0.0011 20.5 2.1 16 10-25 36-51 (60)
23 3n5b_B ASR0485 protein; PII, P 29.2 6.3 0.00022 26.9 -1.3 28 28-64 11-38 (112)
24 1y6i_A Mg-chelatase cofactor G 28.0 4.3 0.00015 30.7 -2.5 31 29-62 199-229 (233)
25 3pmi_A PWWP domain-containing 27.5 21 0.00071 25.0 1.1 27 47-73 49-78 (134)
26 3htm_A Speckle-type POZ protei 27.4 89 0.0031 20.2 4.2 54 37-97 37-93 (172)
27 2q81_A MIZ-1 protein; BTB/POZ 27.3 84 0.0029 19.5 4.0 49 37-97 30-81 (119)
28 3qli_A Coenzyme A transferase; 26.8 37 0.0013 27.7 2.6 44 30-74 402-454 (455)
29 3ezo_A Malonyl COA-acyl carrie 25.9 43 0.0015 25.1 2.7 40 35-75 10-49 (318)
30 1wy3_A Villin; structural prot 25.8 22 0.00074 19.3 0.7 18 56-73 1-18 (35)
31 1vd2_A Protein kinase C, IOTA 24.1 1.4E+02 0.0048 18.9 4.6 26 47-76 18-43 (89)
32 1zav_U 50S ribosomal protein L 23.9 48 0.0017 17.3 1.9 13 61-73 18-30 (30)
33 1buo_A POZ domain, protein (pr 23.0 1.1E+02 0.0037 19.0 3.9 49 37-97 31-82 (121)
34 3fkc_A Transcriptional regulat 22.7 1E+02 0.0035 19.2 3.7 49 37-97 34-85 (116)
35 4eoz_A Speckle-type POZ protei 21.5 1.1E+02 0.0037 19.2 3.7 54 37-97 28-84 (145)
36 2ppi_A Gigaxonin; BTB domain, 21.3 1.5E+02 0.0052 19.1 4.5 56 37-97 50-108 (144)
37 2ihc_A Transcription regulator 21.0 1.2E+02 0.004 18.9 3.8 52 37-97 32-87 (124)
38 3p2o_A Bifunctional protein fo 20.8 1.8E+02 0.006 22.2 5.3 54 33-99 33-88 (285)
No 1
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=62.66 E-value=2.5 Score=23.51 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=17.5
Q ss_pred cccCcHHHHHHHHhHHHhhC
Q 039906 54 SYLNQPLFQELLSRVEEEFG 73 (100)
Q Consensus 54 ~yL~hP~F~~LL~~aeeEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999983
No 2
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=61.67 E-value=11 Score=24.65 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=31.1
Q ss_pred ceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCcee
Q 039906 35 GFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLT 82 (100)
Q Consensus 35 G~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~ 82 (100)
|--.+++.... +|+.|.+ -..-.+.++|++|.+.||++.+...|.
T Consensus 9 ~m~v~Vl~~n~-rr~~VKv--tp~t~L~~VL~eaC~K~gl~~~~~~Lk 53 (90)
T 2al3_A 9 GSAVSVLAPNG-RRHTVKV--TPSTVLLQVLEDTCRRQDFNPSEYDLK 53 (90)
T ss_dssp -CCEEEECTTS-CEEEECC--CTTSBHHHHHHHHHHHTTCCGGGCEEE
T ss_pred ccEEEEEcCCC-cEEEEEE--CCCCCHHHHHHHHHHHhCCChhhCeEE
Confidence 33344444444 8999988 344478899999999999986644443
No 3
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=54.41 E-value=16 Score=25.06 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=44.6
Q ss_pred CCceEEEEecCcceeEEEEecccc-CcHHHHHHHHhHHHhhCCccCCCceeeeCcHHHHHHHHHHhhc
Q 039906 33 PKGFLAVYVGVTQMKRFLIPVSYL-NQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIR 99 (100)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (100)
....+.+-||. +||.+..+-| ++|. .+|..++...-++.+.|.+-|-.+-..|++||.-+.+
T Consensus 33 ~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~ 95 (140)
T 2nz0_B 33 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 95 (140)
T ss_dssp CCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhc
Confidence 45788899997 7899887765 3332 2343344444455556999999999999999998754
No 4
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=53.67 E-value=10 Score=25.48 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=44.0
Q ss_pred CCceEEEEecCcceeEEEEeccccC-cHHHHHHHHhHHHhhCCccCCCceeeeCcHHHHHHHHHHhhc
Q 039906 33 PKGFLAVYVGVTQMKRFLIPVSYLN-QPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIR 99 (100)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL~-hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (100)
....+.+-||. +||.+..+-|. +|- .+|..++...-++.+.|.+-|-.+-..|..||.-+.+
T Consensus 11 ~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~ 73 (124)
T 1s1g_A 11 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 73 (124)
T ss_dssp -CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhc
Confidence 45678899997 78999887663 332 2333344444455456999999999999999998764
No 5
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=52.39 E-value=6.1 Score=22.42 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=15.7
Q ss_pred cccCcHHHHHHHHh----HHHhhC
Q 039906 54 SYLNQPLFQELLSR----VEEEFG 73 (100)
Q Consensus 54 ~yL~hP~F~~LL~~----aeeEfG 73 (100)
..|+.|.||+||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 57889999999974 566664
No 6
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=52.27 E-value=23 Score=22.02 Aligned_cols=50 Identities=12% Similarity=0.243 Sum_probs=37.7
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceeee---CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTIP---CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP---C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..| ..|.|+.++... . + +.+.|+ .+.+.|+.++.-+
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~------~-~-~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST------S-E-NNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC------C-C-SCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC------C-C-CeEEeecCCCCHHHHHHHHHHH
Confidence 3456664 6788888877 679999998754 2 3 678888 7889999998765
No 7
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=48.64 E-value=22 Score=22.47 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=39.9
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceee-e-CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTI-P-CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~I-P-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..| ..|.|+.++...-.| .. ..|.| + .+.+.|+.++.-+
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHHHH
Confidence 4456664 6788888877 789999999865555 23 78999 4 6888999998765
No 8
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=46.87 E-value=40 Score=21.36 Aligned_cols=50 Identities=22% Similarity=0.342 Sum_probs=38.2
Q ss_pred EEEEecCcceeEEEEeccccC--cHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYLN--QPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL~--hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..|. .|.|++++... .. ..|.|| .+.+.|+.++.-+
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHHHH
Confidence 4566764 67777776665 79999998875 23 789997 8899999998765
No 9
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=45.10 E-value=57 Score=20.69 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=43.2
Q ss_pred CceEEEEecCcceeEEEEeccccC-cH--HHHHHHHhHHHhhC--CccCCCceeeeCcHHHHHHHHHHhhc
Q 039906 34 KGFLAVYVGVTQMKRFLIPVSYLN-QP--LFQELLSRVEEEFG--FNHSMGGLTIPCREDTFTDITSQLIR 99 (100)
Q Consensus 34 kG~~aVyVG~e~~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG--~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (100)
...+.+-||. ++|.+..+-|. +| .|..|... ..++. .+. .|.+-|-++...|++||.-+.+
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~-~~~~~~~~d~-~~~~fiDRdp~~F~~IL~~lr~ 70 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKDE-TGAYLIDRDPTYFGPVLNYLRH 70 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTT-CGGGGGGBCT-TSCEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhc-CCCCCcCCCC-CceEEecCChHHHHHHHHHhCC
Confidence 4577889997 78999987775 44 46666432 12332 233 4899999999999999987754
No 10
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=41.73 E-value=3 Score=27.50 Aligned_cols=11 Identities=55% Similarity=0.945 Sum_probs=8.6
Q ss_pred cccCcHHHHHH
Q 039906 54 SYLNQPLFQEL 64 (100)
Q Consensus 54 ~yL~hP~F~~L 64 (100)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 49999998644
No 11
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=41.08 E-value=56 Score=20.19 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=37.1
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceeee-CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTIP-CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..| ..|.|+.++...-.|- .. ..|.|+ .+.+.|+.++.-+
T Consensus 28 v~l~v~~---~~~~aHk~vLaa~S~~F~~~f~~~~~e~---~~-~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 28 VVILVEG---REFPTHRSVLAACSQYFKKLFTSGAVVD---QQ-NVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHC--------CC-SEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHhCHHHHHHhcCCcccc---CC-ceEEeCCCCHHHHHHHHHHH
Confidence 4455664 6788887777 4899999997543332 23 678898 6888999998765
No 12
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=39.99 E-value=8.2 Score=25.01 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=37.6
Q ss_pred EEEEecCcceeEEEEecccc-CcHHHHHHHHhHHHhhCCccCCCceeeeCcHHHHHHHHHHhhc
Q 039906 37 LAVYVGVTQMKRFLIPVSYL-NQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIR 99 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (100)
+.+-||. +||.+..+-| ++|- .+|..++...-++.+.|.+-|-.+...|.+||.-+.+
T Consensus 2 V~LNVGG---~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~ 60 (105)
T 1nn7_A 2 IVLNVSG---TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60 (105)
T ss_dssp EEEEETT---EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHH
T ss_pred EEEEECC---EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhc
Confidence 4466776 6788877655 2331 1233333333344445999999999999999987754
No 13
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=39.33 E-value=53 Score=19.81 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=37.8
Q ss_pred EEEEecCc-ceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceeee-CcHHHHHHHHHHh
Q 039906 37 LAVYVGVT-QMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTIP-CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e-~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||++ ..++|-++-..| ..|.|+.++...-.|-. ..|.|| .+.+.|+.++.-+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-----~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-----SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-----CEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-----CeEEeCCCCHHHHHHHHHHH
Confidence 44566662 227898988888 68999999975433322 468887 6889999998765
No 14
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=38.94 E-value=9.7 Score=23.59 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=18.6
Q ss_pred cccCcHHHHHHHHhHHHhhC
Q 039906 54 SYLNQPLFQELLSRVEEEFG 73 (100)
Q Consensus 54 ~yL~hP~F~~LL~~aeeEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999984
No 15
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=35.13 E-value=8.5 Score=23.81 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=18.5
Q ss_pred cccCcHHHHHHHHhHHHhhC
Q 039906 54 SYLNQPLFQELLSRVEEEFG 73 (100)
Q Consensus 54 ~yL~hP~F~~LL~~aeeEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999983
No 16
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=33.33 E-value=13 Score=24.26 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=18.8
Q ss_pred cccCcHHHHHHHHhHHHhhC
Q 039906 54 SYLNQPLFQELLSRVEEEFG 73 (100)
Q Consensus 54 ~yL~hP~F~~LL~~aeeEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999985
No 17
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=33.17 E-value=11 Score=23.36 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.7
Q ss_pred cccCcHHHHHHHHhHHHhhC
Q 039906 54 SYLNQPLFQELLSRVEEEFG 73 (100)
Q Consensus 54 ~yL~hP~F~~LL~~aeeEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999985
No 18
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=31.79 E-value=27 Score=22.70 Aligned_cols=11 Identities=27% Similarity=0.437 Sum_probs=9.1
Q ss_pred ceEEEEecCcc
Q 039906 35 GFLAVYVGVTQ 45 (100)
Q Consensus 35 G~~aVyVG~e~ 45 (100)
-|.+||||+..
T Consensus 22 ~H~gIYvGdg~ 32 (125)
T 2lkt_A 22 EHWALYIGDGY 32 (125)
T ss_dssp CEEEEEEETTE
T ss_pred cEEEEEeCCCe
Confidence 38999999974
No 19
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=31.48 E-value=74 Score=19.77 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=36.4
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceeee-CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTIP-CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..| ..|.|+.++... . + +.|.|| .+.+.|+.++.-+
T Consensus 27 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~-----~--~-~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 27 ATLDVGG---LVFKAHWSVLACCSHFFQSLYGDG-----S--G-GSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTT-----T--C-CCEEECGGGHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHhhcCHHHHHHHCCC-----C--C-CeEEeCCCCHHHHHHHHHHH
Confidence 3455665 6788877777 479999998652 2 3 679998 5678999988765
No 20
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=30.08 E-value=52 Score=20.56 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=37.7
Q ss_pred EEEEecCcceeEEEEeccccC--cHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYLN--QPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL~--hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..|. .|.|++++.....| + ..|.+| .+.+.|+.++.-+
T Consensus 35 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~-~~i~l~~~~~~~~f~~~l~~i 90 (125)
T 3ohu_A 35 VTLIVER---KEFRAHRAVLAACSEYFWQALVGQTKN-----D-LVVSLPEEVTARGFGPLLQFA 90 (125)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHTTCCCS-----S-CEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEechHHHHHHcCHHHHHHhcCCCCC-----C-cEEEeCCCCCHHHHHHHHHhH
Confidence 4566764 56777777764 69999998764333 2 678887 7899999998765
No 21
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=29.78 E-value=49 Score=21.32 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=30.1
Q ss_pred cCcHHHHHHHHhH------HHhhCCccCCCceeee--CcHHHHHHHHHHhh
Q 039906 56 LNQPLFQELLSRV------EEEFGFNHSMGGLTIP--CREDTFTDITSQLI 98 (100)
Q Consensus 56 L~hP~F~~LL~~a------eeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~ 98 (100)
+++|.|++=+... =+..||....+.+++| +++...+++...|.
T Consensus 46 ~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~ 96 (99)
T 2ccq_A 46 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIA 96 (99)
T ss_dssp TTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHH
Confidence 6788888865443 2457999777889998 66666766666554
No 22
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=29.38 E-value=33 Score=20.48 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=12.4
Q ss_pred HHHHHHhhhhhhhccC
Q 039906 10 LAKQILRQSVLNAEKG 25 (100)
Q Consensus 10 ~~k~~l~r~~~~~~~~ 25 (100)
++.++||||+|...+.
T Consensus 36 rlesllrrwnsrrada 51 (60)
T 1pzq_A 36 RLESLLRRWNSRRADA 51 (60)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhcccCC
Confidence 6788999999875543
No 23
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=29.23 E-value=6.3 Score=26.94 Aligned_cols=28 Identities=29% Similarity=0.352 Sum_probs=9.3
Q ss_pred CccCCCCceEEEEecCcceeEEEEeccccCcHHHHHH
Q 039906 28 TSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQEL 64 (100)
Q Consensus 28 ~~~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~L 64 (100)
.+.-||+|..--=+..| .|||||.|.-|
T Consensus 11 ~~~~~~~~~~~~~ms~E---------~YLNHPTFGLL 38 (112)
T 3n5b_B 11 SSGLVPRGSHMNPENSE---------TYINHPTWGLL 38 (112)
T ss_dssp ---------------CC---------CEEEETTTEEE
T ss_pred cCCcccCCccCCCcchh---------hhccCCccchh
Confidence 34557776543222222 39999998654
No 24
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=27.97 E-value=4.3 Score=30.72 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=20.5
Q ss_pred ccCCCCceEEEEecCcceeEEEEeccccCcHHHH
Q 039906 29 SLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQ 62 (100)
Q Consensus 29 ~~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~ 62 (100)
...+|+||+|..-.-.. -| |=.+.|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG-~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRG-VR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTC-TH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccch-HH--HHHHHHCCcccc
Confidence 34699999998642211 11 445789999884
No 25
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=27.47 E-value=21 Score=25.05 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=24.1
Q ss_pred eEEEEeccccCc---HHHHHHHHhHHHhhC
Q 039906 47 KRFLIPVSYLNQ---PLFQELLSRVEEEFG 73 (100)
Q Consensus 47 ~RfvVp~~yL~h---P~F~~LL~~aeeEfG 73 (100)
+=|-||+.-|+| -.-++|+++|.|.||
T Consensus 49 rGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 49 KGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp CCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred CceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 779999998888 467999999999998
No 26
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=27.39 E-value=89 Score=20.20 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=38.7
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceeee-CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTIP-CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..| ..|.|+.++...-.| ..+ ..|.|| .+.+.|+.++.-+
T Consensus 37 v~l~v~~---~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~~l~~~ 93 (172)
T 3htm_A 37 CCLCVAG---QEFQAHKAILAARSPVFSAMFEHEMEE---SKK-NRVEINDVEPEVFKEMMCFI 93 (172)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHSCCCG---GGT-TEEEECSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHHHcCHHHHHHHccCccc---cCC-CeEEecCCCHHHHHHHHHHH
Confidence 5566765 6788888777 479999999853222 122 678887 6888999998765
No 27
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=27.27 E-value=84 Score=19.51 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=35.7
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceeeeC-cHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTIPC-REDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IPC-~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..| ..|.|++++.. ++ ..+.++- +.+.|+.++.-+
T Consensus 30 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~--------~~-~~i~l~~~~~~~f~~ll~~~ 81 (119)
T 2q81_A 30 CTFVVDG---VHFKAHKAVLAACSEYFKMLFVD--------QK-DVVHLDISNAAGLGQVLEFM 81 (119)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHH--------CC-SGGGGGGCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEehhHHHHHHcCHHHHHHHcC--------CC-CEEEeCCCCHHHHHHHHHHH
Confidence 3455665 6788888877 48999999975 22 5677774 678899988755
No 28
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=26.78 E-value=37 Score=27.68 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=28.7
Q ss_pred cCCCCceEEEEecC---------cceeEEEEeccccCcHHHHHHHHhHHHhhCC
Q 039906 30 LDVPKGFLAVYVGV---------TQMKRFLIPVSYLNQPLFQELLSRVEEEFGF 74 (100)
Q Consensus 30 ~~vpkG~~aVyVG~---------e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~ 74 (100)
...|++++-+.|-| .-.+|-.-=++ +-||.||+.|.+++++.|+
T Consensus 402 vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 402 VTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp CSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred cccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 34577777666633 11233332234 8999999999999888764
No 29
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=25.92 E-value=43 Score=25.06 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=27.1
Q ss_pred ceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCc
Q 039906 35 GFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFN 75 (100)
Q Consensus 35 G~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~ 75 (100)
...-|+-|.+. +..=.--+.+++|.|++.++++.+.+|++
T Consensus 10 ~~~f~F~GQGs-Q~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 10 KFAFVFPGQGS-QSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CEEEEECCTTC-CCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CeEEEECCcch-hhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 45667777652 11111223349999999999999999875
No 30
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=25.78 E-value=22 Score=19.34 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=14.2
Q ss_pred cCcHHHHHHHHhHHHhhC
Q 039906 56 LNQPLFQELLSRVEEEFG 73 (100)
Q Consensus 56 L~hP~F~~LL~~aeeEfG 73 (100)
|+.-.|++++.++.+||-
T Consensus 1 Lsd~dF~~vFgmsr~eF~ 18 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAFA 18 (35)
T ss_dssp CCHHHHHHHHSSCHHHHH
T ss_pred CCHHHHHHHHCCCHHHHH
Confidence 566778888888888873
No 31
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=24.07 E-value=1.4e+02 Score=18.95 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=22.3
Q ss_pred eEEEEeccccCcHHHHHHHHhHHHhhCCcc
Q 039906 47 KRFLIPVSYLNQPLFQELLSRVEEEFGFNH 76 (100)
Q Consensus 47 ~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~ 76 (100)
.|+-||. ...|++|.++-.+-|++..
T Consensus 18 ~~~~v~~----~i~~~~L~~kv~~~~~~~~ 43 (89)
T 1vd2_A 18 MITHFEP----SISFEGLCNEVRDMCSFDN 43 (89)
T ss_dssp EEEEECT----TCCHHHHHHHHHHHTTCCS
T ss_pred EEEECCC----CCCHHHHHHHHHHHhCCCC
Confidence 7888887 4689999999999999863
No 32
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=23.94 E-value=48 Score=17.25 Aligned_cols=13 Identities=38% Similarity=0.945 Sum_probs=10.4
Q ss_pred HHHHHHhHHHhhC
Q 039906 61 FQELLSRVEEEFG 73 (100)
Q Consensus 61 F~~LL~~aeeEfG 73 (100)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899998
No 33
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=23.00 E-value=1.1e+02 Score=18.98 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=35.6
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceeee-CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTIP-CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..| ..|.|++++.. .. ..+.|+ .+.+.|+.++.-+
T Consensus 31 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~--------~~-~~i~l~~~~~~~f~~ll~~~ 82 (121)
T 1buo_A 31 VVIMVDS---QEFHAHRTVLACTSKMFEILFHR--------NS-QHYTLDFLSPKTFQQILEYA 82 (121)
T ss_dssp EEEEESS---CEEEECHHHHHHHCHHHHHHTTS--------CC-SEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehhHHHHhhcCHHHHHHHcC--------CC-cEEEeCCCCHHHHHHHHHhh
Confidence 3455664 5677777776 68999998853 12 578888 7888999988754
No 34
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=22.66 E-value=1e+02 Score=19.17 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=34.8
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceeee-CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTIP-CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..| ..|.|++++... . ..|.++ .+.+.|+.++.-+
T Consensus 34 v~l~v~~---~~f~aHk~vLaa~S~~F~~~f~~~--------~-~~i~l~~~~~~~f~~~l~~~ 85 (116)
T 3fkc_A 34 VTVIVED---RKFRAHKNILSASSTYFHQLFSVA--------G-QVVELSFIRAEIFAEILNYI 85 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHTTSC--------C-SEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehhHHHHHHcCHHHHHHHcCC--------C-CEEEeCCCCHHHHHHHHHhh
Confidence 4556665 5677776665 468898888653 2 578886 7889999988765
No 35
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=21.47 E-value=1.1e+02 Score=19.16 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=37.8
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceeee-CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTIP-CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..| ..|.|+.++...-.|- .+ +.+.+| .+.+.|+.++.-+
T Consensus 28 v~l~v~~---~~~~~Hk~iL~~~S~~F~~~f~~~~~e~---~~-~~i~l~~~~~~~~~~~l~~~ 84 (145)
T 4eoz_A 28 CCLCVAG---QEFQAHKAILAARSPVFSAMFEHEMEES---KK-NRVEINDVEPEVFKEMMCFI 84 (145)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHSSSHHH---HH-TEEEECSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeehHHHHHcCHHHHHHHcCCCcCC---CC-ceEEecCCCHHHHHHHHHhh
Confidence 4566765 5677777666 4799999997532221 12 578887 7889999998765
No 36
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=21.27 E-value=1.5e+02 Score=19.13 Aligned_cols=56 Identities=7% Similarity=0.070 Sum_probs=37.4
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceeee-CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTIP-CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|+.++...-.|-. ... ..|.|+ .+.+.|+.++.-+
T Consensus 50 v~l~v~~---~~f~aHk~vLaa~S~yF~~mf~~~~~e~e-~~~-~~I~l~~v~~~~f~~lL~fi 108 (144)
T 2ppi_A 50 AHLVLDG---EEIPVQKNILAAASPYIRTKLNYNPPKDD-GST-YKIELEGISVMVMREILDYI 108 (144)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHHCC------CC-CEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEehHHHHHHHcCHHHHHHHcCCCcccc-CCC-cEEEeCCCCHHHHHHHHHHH
Confidence 3455664 6788887777 48999999975321110 122 678998 4888999998765
No 37
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=20.96 E-value=1.2e+02 Score=18.94 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=35.5
Q ss_pred EEEEecCcceeEEEEecccc--CcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHh
Q 039906 37 LAVYVGVTQMKRFLIPVSYL--NQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQL 97 (100)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-++-..| ..|.|++++...-.| . ..+.+| .+.+.|+.++.-+
T Consensus 32 v~l~v~~---~~~~aHk~vLaa~S~yF~~mf~~~~~e-----~-~~i~l~~~v~~~~f~~lL~~i 87 (124)
T 2ihc_A 32 VTIFVEG---QRFRAHRSVLAACSSYFHSRIVGQADG-----E-LNITLPEEVTVKGFEPLIQFA 87 (124)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHTTC--------C-EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEecHHHHHHHcCHHHHHHHcCCCCC-----C-ceEeecCCcCHHHHHHHHHHh
Confidence 3455664 6787777777 589999998754322 2 467885 7788999888754
No 38
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=20.77 E-value=1.8e+02 Score=22.19 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=38.9
Q ss_pred CCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeee--CcHHHHHHHHHHhhc
Q 039906 33 PKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIP--CREDTFTDITSQLIR 99 (100)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.|...|.||+.. . .-....--.++.+|.|+... .+.+| ++.+.+...+..|+.
T Consensus 33 ~P~Lavilvg~dp-------a----S~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN~ 88 (285)
T 3p2o_A 33 ESCLAVILVGDNP-------A----SQTYVKSKAKACEECGIKSL--VYHLNENITQNELLALINTLNH 88 (285)
T ss_dssp CCEEEEEEESCCH-------H----HHHHHHHHHHHHHHHTCEEE--EEEECTTCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCH-------H----HHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 5589999999862 0 11234456688999999864 68888 777888888877763
Done!