BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039909
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U3I|A Chain A, Crystal Structure Of Glutathione S-Tranferase From
Schistosoma Mansoni
Length = 211
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 202 NFEEGPYVFPNASWGVLIPPKIEDDHSPLPGWIIESLKAVKYIDLKHFFVPE 253
+F++ P + P G L K+ DDH + W++ESL +Y+ KH + E
Sbjct: 37 SFQDWPKIKPTIPGGRLPAVKVTDDHGHVK-WMLESLAIARYMAKKHHMMGE 87
>pdb|1OE7|A Chain A, 28kda Glutathione S-Transferase From Schistosoma
Haematobium
pdb|1OE7|B Chain B, 28kda Glutathione S-Transferase From Schistosoma
Haematobium
pdb|1OE8|A Chain A, 28kda Glutathione S-transferase From Schistosoma
Haematobium (glutathione Saturated)
pdb|1OE8|B Chain B, 28kda Glutathione S-transferase From Schistosoma
Haematobium (glutathione Saturated)
pdb|2C80|A Chain A, Stucture Of Sh28gst In Complex With S-Hexyl Glutathione
pdb|2C80|B Chain B, Stucture Of Sh28gst In Complex With S-Hexyl Glutathione
pdb|2CA8|A Chain A, Structure Of Sh28gst In Complex With Gsh At Ph 6.0
Length = 211
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 202 NFEEGPYVFPNASWGVLIPPKIEDDHSPLPGWIIESLKAVKYIDLKHFFV 251
+F++ P + P G L KI D+H + W++ESL +Y+ KH +
Sbjct: 37 SFQDWPKIKPTIPGGRLPAVKITDNHGHVK-WMVESLAIARYMAKKHHMM 85
>pdb|2F8F|A Chain A, Crystal Structure Of The Y10f Mutant Of The Gluathione
S-Transferase From Schistosoma Haematobium
pdb|2F8F|B Chain B, Crystal Structure Of The Y10f Mutant Of The Gluathione
S-Transferase From Schistosoma Haematobium
Length = 211
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 202 NFEEGPYVFPNASWGVLIPPKIEDDHSPLPGWIIESLKAVKYIDLKHFFV 251
+F++ P + P G L KI D+H + W++ESL +Y+ KH +
Sbjct: 37 SFQDWPKIKPTIPGGRLPAVKITDNHGHVK-WMVESLAIARYMAKKHHMM 85
>pdb|2C8U|A Chain A, Structure Of R21q Mutant Of Sh28gst
pdb|2C8U|B Chain B, Structure Of R21q Mutant Of Sh28gst
Length = 211
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 202 NFEEGPYVFPNASWGVLIPPKIEDDHSPLPGWIIESLKAVKYIDLKHFFV 251
+F++ P + P G L KI D+H + W++ESL +Y+ KH +
Sbjct: 37 SFQDWPKIKPTIPGGRLPAVKITDNHGHVK-WMVESLAIARYMAKKHHMM 85
>pdb|2CAI|A Chain A, Structure Of Glutathione-S-Transferase Mutant, R21l, From
Schistosoma Haematobium
pdb|2CAI|B Chain B, Structure Of Glutathione-S-Transferase Mutant, R21l, From
Schistosoma Haematobium
pdb|2CAQ|A Chain A, Structure Of R21l Mutant Of Sh28gst In Complex With Gsh
Length = 211
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 202 NFEEGPYVFPNASWGVLIPPKIEDDHSPLPGWIIESLKAVKYIDLKHFFV 251
+F++ P + P G L KI D+H + W++ESL +Y+ KH +
Sbjct: 37 SFQDWPKIKPTIPGGRLPAVKITDNHGHVK-WMVESLAIARYMAKKHHMM 85
>pdb|1W4T|A Chain A, X-Ray Crystallographic Structure Of Pseudomonas Aeruginosa
Arylamine N-Acetyltransferase
Length = 299
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 46 THPNAIPNWQISGYVEYIKSGHKQGDMLLIVPEGVFAVRLGNEASIKQNIK 96
THP+++ + + +K+ +GD+ L + +G+F R GN ++++ ++
Sbjct: 220 THPHSV-------FRQGLKAAITEGDLRLTLADGLFGQRAGNGETLQRQLR 263
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 74 LIVPEGVFAVRLGNEASIKQNIKVTKGRFYSMTFSAARTCAQEEKLNVSV 123
L++ E + +G E +KQ IK+ R +M FSA +T E+ +S+
Sbjct: 205 LVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISL 254
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 238 LKAVKYIDLKHFFVPEGRRAIELVAGKESALTQVV 272
LK ++ID H + +GR A E+ +G E LT+++
Sbjct: 809 LKDTEFIDQNHNVLLKGRVACEINSGYELVLTELI 843
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,539,798
Number of Sequences: 62578
Number of extensions: 454129
Number of successful extensions: 836
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 8
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)