Query 039909
Match_columns 339
No_of_seqs 182 out of 261
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:15:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03089 hypothetical protein; 100.0 9E-121 2E-125 894.4 36.0 328 7-339 11-338 (373)
2 PF04862 DUF642: Protein of un 100.0 1.8E-48 3.8E-53 343.9 20.3 158 24-185 1-159 (159)
3 PLN03089 hypothetical protein; 100.0 1.4E-40 3E-45 327.6 19.1 161 21-193 192-371 (373)
4 PF04862 DUF642: Protein of un 100.0 3.2E-32 7E-37 240.4 15.8 128 196-338 1-138 (159)
5 PF02018 CBM_4_9: Carbohydrate 98.8 1.1E-07 2.5E-12 77.5 14.0 114 195-338 1-122 (131)
6 PF02018 CBM_4_9: Carbohydrate 98.7 2.1E-06 4.5E-11 70.0 16.0 115 23-166 1-126 (131)
7 PF00629 MAM: MAM domain; Int 81.9 12 0.00026 31.0 8.7 85 99-186 70-155 (160)
8 cd06263 MAM Meprin, A5 protein 79.0 19 0.00042 30.6 9.2 82 101-186 71-154 (157)
9 smart00137 MAM Domain in mepri 75.5 46 0.001 28.9 10.8 82 101-186 75-158 (161)
10 cd08895 SRPBCC_CalC_Aha1-like_ 63.7 83 0.0018 26.5 9.6 17 322-338 99-115 (146)
11 PF08327 AHSA1: Activator of H 62.0 68 0.0015 25.4 8.4 63 273-338 29-93 (124)
12 cd08901 SRPBCC_CalC_Aha1-like_ 57.0 94 0.002 25.9 8.7 58 275-338 38-96 (136)
13 PF14900 DUF4493: Domain of un 56.2 51 0.0011 30.6 7.6 74 52-125 127-220 (235)
14 PF15425 DUF4627: Domain of un 55.9 85 0.0018 29.6 8.7 77 23-112 6-99 (212)
15 PF08308 PEGA: PEGA domain; I 55.0 64 0.0014 24.1 6.6 36 75-110 31-68 (71)
16 cd08894 SRPBCC_CalC_Aha1-like_ 54.1 1E+02 0.0022 25.7 8.5 60 276-338 45-104 (139)
17 PF03422 CBM_6: Carbohydrate b 51.8 1.3E+02 0.0028 24.4 13.2 102 79-185 21-124 (125)
18 PF08308 PEGA: PEGA domain; I 49.2 93 0.002 23.2 6.7 36 251-286 32-67 (71)
19 PF15425 DUF4627: Domain of un 48.0 1.5E+02 0.0032 28.0 9.0 78 194-286 5-95 (212)
20 PF14344 DUF4397: Domain of un 44.8 37 0.0008 27.9 4.2 37 72-108 36-80 (122)
21 PF05547 Peptidase_M6: Immune 44.0 1.6E+02 0.0035 32.3 9.9 104 78-186 339-460 (645)
22 PF07705 CARDB: CARDB; InterP 43.3 1.5E+02 0.0032 22.7 8.0 57 274-330 15-72 (101)
23 cd06263 MAM Meprin, A5 protein 41.5 2.2E+02 0.0047 24.0 10.1 59 279-338 72-133 (157)
24 cd08545 YcnI_like Reeler-like 40.4 44 0.00096 30.0 4.3 44 97-148 12-57 (152)
25 PF14054 DUF4249: Domain of un 37.7 2.2E+02 0.0048 26.7 8.9 17 93-109 92-108 (298)
26 PF07987 DUF1775: Domain of un 37.1 66 0.0014 28.7 4.9 44 97-148 9-54 (145)
27 cd08896 SRPBCC_CalC_Aha1-like_ 36.3 2.6E+02 0.0056 23.4 9.6 17 321-337 94-110 (146)
28 PRK15252 putative fimbrial-lik 35.1 72 0.0016 32.4 5.2 98 15-125 22-126 (344)
29 PF07675 Cleaved_Adhesin: Clea 34.8 2.9E+02 0.0062 24.5 8.6 79 99-184 71-167 (167)
30 PF08400 phage_tail_N: Prophag 34.1 1.4E+02 0.0031 26.4 6.4 74 215-308 6-86 (134)
31 PF14344 DUF4397: Domain of un 30.6 80 0.0017 25.9 4.1 51 239-290 27-84 (122)
32 PF00629 MAM: MAM domain; Int 27.9 3.4E+02 0.0073 22.2 8.9 59 279-338 73-134 (160)
33 cd07822 SRPBCC_4 Ligand-bindin 27.2 3.2E+02 0.0069 21.6 8.7 6 229-234 24-29 (141)
34 cd08899 SRPBCC_CalC_Aha1-like_ 26.6 3.4E+02 0.0074 23.2 7.5 30 309-338 77-106 (157)
35 PF03422 CBM_6: Carbohydrate b 26.2 3.5E+02 0.0076 21.8 10.7 74 254-329 21-97 (125)
36 PF08358 Flexi_CP_N: Carlaviru 25.8 46 0.001 24.9 1.6 35 196-236 16-50 (52)
37 PF14122 YokU: YokU-like prote 24.8 37 0.0008 28.1 1.0 16 245-260 15-30 (87)
38 TIGR02148 Fibro_Slime fibro-sl 24.0 2E+02 0.0044 23.9 5.2 38 73-110 30-73 (90)
39 cd07821 PYR_PYL_RCAR_like Pyra 23.3 3.6E+02 0.0079 21.2 6.7 14 231-245 27-40 (140)
40 cd08862 SRPBCC_Smu440-like Lig 23.1 3.9E+02 0.0085 21.3 8.1 16 323-338 85-101 (138)
41 KOG0303 Actin-binding protein 22.9 5E+02 0.011 27.4 8.8 115 77-224 150-273 (472)
42 PF08194 DIM: DIM protein; In 20.8 27 0.00059 24.4 -0.4 11 20-30 21-31 (36)
43 PF03684 UPF0179: Uncharacteri 20.2 2.2E+02 0.0049 25.4 5.1 52 273-329 37-92 (142)
No 1
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=9.1e-121 Score=894.41 Aligned_cols=328 Identities=70% Similarity=1.181 Sum_probs=316.5
Q ss_pred eehhhhhhhceeeeccCCcccCCCCCCCCCCCCCCccEEecCCCCCCcEEEeeEEEEeCCCcCCCceEecCCCCeEEEcC
Q 039909 7 LLVLLCATCHVVLSVTDGLLPNGNFEYGPKRSQMKGTVVTHPNAIPNWQISGYVEYIKSGHKQGDMLLIVPEGVFAVRLG 86 (339)
Q Consensus 7 ~~~l~~~~~~~~~~~~~nLL~NG~FE~gP~~~~~~gt~v~g~s~IPgW~i~G~VeyI~sg~~~g~m~~~vP~G~~AVeLG 86 (339)
++||++++++++++.+||||+|||||++|+++++++++.++.++||||+|+|.||||+++||||||+|.||+|+||||||
T Consensus 11 ~~~~~~~~~~~~~~~~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g~VeyI~s~~~~~~m~~~vP~G~~Av~LG 90 (373)
T PLN03089 11 LLLLLCAAAASAAPVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGFVEYISSGQKQGGMLLVVPEGAHAVRLG 90 (373)
T ss_pred HHHHHHhcccccccccCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecCcEEEEeCCCccCceeEECCCCchhhhcC
Confidence 33344444555566899999999999999999888898899999999999999999999999999999999999999999
Q ss_pred CCceeeEEEEecCCCeEEEEEEecCCccccceEEEEEeccccCCCceeEeEEeeecCCCeeEEEEEEEEccceEEEEEEC
Q 039909 87 NEASIKQNIKVTKGRFYSMTFSAARTCAQEEKLNVSVSPNLETNDWAILPMQTMYSNNGWDSYAWAFVADAEEVEITIHN 166 (339)
Q Consensus 87 ~e~sI~Q~~~t~~G~~Y~LTFsaartCa~~~~l~Vsv~~~~~~~~s~~~~~qt~y~s~GW~~~s~~F~A~~~~t~L~F~s 166 (339)
+|++|+|+|+|++|++|+|||+++|+|+|+|.|+|+|.+ +++++|+||+|+++||++|+|+|+|++++++|+||+
T Consensus 91 ~e~sI~Q~i~t~~G~~Y~LTFs~ar~c~~~~~v~vsv~~-----~~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~~ 165 (373)
T PLN03089 91 NEASISQTLTVTKGSYYSLTFSAARTCAQDESLNVSVPP-----ESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFHN 165 (373)
T ss_pred CCceEEEEEEccCCCEEEEEEEecCCCCCCceEEEEecC-----CCcEEeeEEeccCCCcEEEEEEEEEecccEEEEEEC
Confidence 999999999999999999999999999999999999987 889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcceeEeEEeeecCCCcccccceecCCccccCccCCCCCCceeeCCCCCCCCCCCCCcEEeeeceeeEeec
Q 039909 167 PGVEEDPACGPLIDSVALKVLYPPKRTGVNILKNGNFEEGPYVFPNASWGVLIPPKIEDDHSPLPGWIIESLKAVKYIDL 246 (339)
Q Consensus 167 ~g~~~~~~CGPvID~VaV~~l~~p~~~~~Nll~NG~FEegp~~~p~~~~gvl~p~~~~~~~splpgW~v~s~k~V~yid~ 246 (339)
++.++|++|||+||||+||+|++|+++++|||+||+||||||+|||++|||||||+++|++||||||||||+|+|||||+
T Consensus 166 ~~~~~D~~CGPviD~VaIk~l~~P~p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yids 245 (373)
T PLN03089 166 PGVEEDPACGPLIDAVAIKTLFPPRPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYIDS 245 (373)
T ss_pred cccCCCCcccceeeeEEEeeccCCCccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCceeEEeecCCcceeeEEEEccCCCeEEEEEEeccCCCCCCcceEEEEEecCCeeEEEEEeCCccceEEEEEE
Q 039909 247 KHFFVPEGRRAIELVAGKESALTQVVKTEVNKTYALSFAVGDAGNGCAGTLGVEAYAGRDNVKVTYASKGKGGFKKALLR 326 (339)
Q Consensus 247 ~h~~vp~G~~aveLv~g~e~ai~Q~v~T~~g~~Y~ltFsvgda~n~c~g~~~v~a~ag~~~~~~~~~s~g~gg~~~~~~~ 326 (339)
+||+||||+|||||++|+|++|+|+|+|+||++|+|+|++|||+|+|.|+|+|+|+||+++++|+|+|+|+|+|++++|+
T Consensus 246 ~h~~vp~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s~g~gg~~~~s~~ 325 (373)
T PLN03089 246 AHFSVPEGKRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYESQGKGGFKRASLR 325 (373)
T ss_pred CcccCCCCceEEEeccCCcceEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEecCCCcceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccceeEEEeC
Q 039909 327 FKAVSPRTRIMFL 339 (339)
Q Consensus 327 F~A~~~~Trv~F~ 339 (339)
|+|+++||||+||
T Consensus 326 F~A~s~~Trl~F~ 338 (373)
T PLN03089 326 FKAVSNRTRITFY 338 (373)
T ss_pred EEeccCCEEEEEE
Confidence 9999999999995
No 2
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=1.8e-48 Score=343.89 Aligned_cols=158 Identities=50% Similarity=0.876 Sum_probs=149.3
Q ss_pred CcccCCCCCCCCCCCCCCccEEe-cCCCCCCcEEEeeEEEEeCCCcCCCceEecCCCCeEEEcCCCceeeEEEEecCCCe
Q 039909 24 GLLPNGNFEYGPKRSQMKGTVVT-HPNAIPNWQISGYVEYIKSGHKQGDMLLIVPEGVFAVRLGNEASIKQNIKVTKGRF 102 (339)
Q Consensus 24 nLL~NG~FE~gP~~~~~~gt~v~-g~s~IPgW~i~G~VeyI~sg~~~g~m~~~vP~G~~AVeLG~e~sI~Q~~~t~~G~~ 102 (339)
|||+||+||++|...+++++.+. +.++||||+++|.||||+++|++|+|++.||+|+||||||++++|+|+|+|++|++
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~~~~~~s~ipGWtv~g~Ve~i~~~~~~g~~~~~~p~G~~aveLg~~~~I~Q~~~t~~G~~ 80 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTSLSDGSSSIPGWTVSGSVEYIDSGHFQGGMYFAVPEGKQAVELGNEGSISQTFTTVPGST 80 (159)
T ss_pred CCccCCCCCCCCccCCCCcceEccCCCcCCCcEEcCEEEEEecCCccCceeeeCCCCceEEEcCCCceEEEEEEccCCCE
Confidence 89999999999998888777676 88999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCccccceEEEEEeccccCCCceeEeEEeeecCCCeeEEEEEEEEccceEEEEEECCCCCCCCCCCcceeEe
Q 039909 103 YSMTFSAARTCAQEEKLNVSVSPNLETNDWAILPMQTMYSNNGWDSYAWAFVADAEEVEITIHNPGVEEDPACGPLIDSV 182 (339)
Q Consensus 103 Y~LTFsaartCa~~~~l~Vsv~~~~~~~~s~~~~~qt~y~s~GW~~~s~~F~A~~~~t~L~F~s~g~~~~~~CGPvID~V 182 (339)
|+|||+++|+|++.+.|+|+|.+ ..+.++++++.|++.+|++|+|.|+|.+++++|.|++++.++|++|||+||||
T Consensus 81 Y~LtF~~~~~~~~~~~l~V~v~~----~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~~~~~~d~~cGp~iDnV 156 (159)
T PF04862_consen 81 YTLTFSLARNCAQSESLSVSVGG----QFSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHNPGMESDSACGPVIDNV 156 (159)
T ss_pred EEEEEEecCCCCCCccEEEEEec----ccceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEECCCccCCCCceeEEEEE
Confidence 99999999999999999999986 13689999999988899999999999999999999999988899999999999
Q ss_pred EEe
Q 039909 183 ALK 185 (339)
Q Consensus 183 aV~ 185 (339)
+||
T Consensus 157 ~vk 159 (159)
T PF04862_consen 157 SVK 159 (159)
T ss_pred EeC
Confidence 997
No 3
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=327.59 Aligned_cols=161 Identities=28% Similarity=0.515 Sum_probs=141.0
Q ss_pred ccCCcccCCCCCCCCCCCCCCc--cEE-----ecCCCCCCcEEE--eeEEEEeCCCcCCCceEecCCCCeEEEc--CCCc
Q 039909 21 VTDGLLPNGNFEYGPKRSQMKG--TVV-----THPNAIPNWQIS--GYVEYIKSGHKQGDMLLIVPEGVFAVRL--GNEA 89 (339)
Q Consensus 21 ~~~nLL~NG~FE~gP~~~~~~g--t~v-----~g~s~IPgW~i~--G~VeyI~sg~~~g~m~~~vP~G~~AVeL--G~e~ 89 (339)
+++|||+||+||+||+.+++.. .++ ++.++||||+|+ +.|||||+.| |.||+|+||||| |+|+
T Consensus 192 ~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yids~h------~~vp~G~~aveL~~g~e~ 265 (373)
T PLN03089 192 TKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYIDSAH------FSVPEGKRAVELVSGKES 265 (373)
T ss_pred cccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEecCc------ccCCCCceEEEeccCCcc
Confidence 7899999999999999876544 333 368999999995 4899999999 999999999999 9999
Q ss_pred eeeEEEEecCCCeEEEEEEe---cCCccccceEEEEEeccccCCCceeEeEEeeecCCCeeEEEEEEEEccceEEEEEEC
Q 039909 90 SIKQNIKVTKGRFYSMTFSA---ARTCAQEEKLNVSVSPNLETNDWAILPMQTMYSNNGWDSYAWAFVADAEEVEITIHN 166 (339)
Q Consensus 90 sI~Q~~~t~~G~~Y~LTFsa---artCa~~~~l~Vsv~~~~~~~~s~~~~~qt~y~s~GW~~~s~~F~A~~~~t~L~F~s 166 (339)
+|+|+|+|++|+.|+|||++ +|.|++++.+.+.++. .++++++++. ++.||++++|.|+|++++|||+|+|
T Consensus 266 aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~-----~~~~v~~~s~-g~gg~~~~s~~F~A~s~~Trl~F~s 339 (373)
T PLN03089 266 AIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGK-----DTQKVPYESQ-GKGGFKRASLRFKAVSNRTRITFYS 339 (373)
T ss_pred eEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeec-----ccceEEEecC-CCcceEEEEEEEEeccCCEEEEEEE
Confidence 99999999999999999996 5789998777766654 6788888776 6668999999999999999999999
Q ss_pred CCCCC-----CCCCCcceeEeEEeeecCCCcc
Q 039909 167 PGVEE-----DPACGPLIDSVALKVLYPPKRT 193 (339)
Q Consensus 167 ~g~~~-----~~~CGPvID~VaV~~l~~p~~~ 193 (339)
.+|++ +++|||+||||+|+.++.|++.
T Consensus 340 ~~y~~~~d~~~~~cGPvlDdV~v~~~~~~~~~ 371 (373)
T PLN03089 340 SFYHTKSDDFGSLCGPVVDDVRVVPVRAPRAG 371 (373)
T ss_pred eecccccCcCCCcccceeeeEEEEEccCCccc
Confidence 87753 5779999999999999987753
No 4
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=3.2e-32 Score=240.45 Aligned_cols=128 Identities=39% Similarity=0.693 Sum_probs=107.9
Q ss_pred cceecCCccccCccCC-CCCCceeeCCCCCCCCCCCCCcEEeeeceeeEeecCCcc------cCCCceeEEeecCCccee
Q 039909 196 NILKNGNFEEGPYVFP-NASWGVLIPPKIEDDHSPLPGWIIESLKAVKYIDLKHFF------VPEGRRAIELVAGKESAL 268 (339)
Q Consensus 196 Nll~NG~FEegp~~~p-~~~~gvl~p~~~~~~~splpgW~v~s~k~V~yid~~h~~------vp~G~~aveLv~g~e~ai 268 (339)
|||+||+||+||+.++ +.++ .++..++||||+|++ .|||||+.|++ ||+|++|||| |+|++|
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~-------~~~~~s~ipGWtv~g--~Ve~i~~~~~~g~~~~~~p~G~~aveL--g~~~~I 69 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTS-------LSDGSSSIPGWTVSG--SVEYIDSGHFQGGMYFAVPEGKQAVEL--GNEGSI 69 (159)
T ss_pred CCccCCCCCCCCccCCCCcce-------EccCCCcCCCcEEcC--EEEEEecCCccCceeeeCCCCceEEEc--CCCceE
Confidence 8999999999999866 4555 456899999999985 49999999998 9999999999 999999
Q ss_pred eEEEEccCCCeEEEEEEeccCCCCCCc--ceEEEEEecCCeeEEEEEeCC-ccceEEEEEEEEEccceeEEEe
Q 039909 269 TQVVKTEVNKTYALSFAVGDAGNGCAG--TLGVEAYAGRDNVKVTYASKG-KGGFKKALLRFKAVSPRTRIMF 338 (339)
Q Consensus 269 ~Q~v~T~~g~~Y~ltFsvgda~n~c~g--~~~v~a~ag~~~~~~~~~s~g-~gg~~~~~~~F~A~~~~Trv~F 338 (339)
.|.|+|++|++|+|+|+++ +.|.+ .|.|++.+. .+..+++++.. +++|++.+|+|+|.+.++++.|
T Consensus 70 ~Q~~~t~~G~~Y~LtF~~~---~~~~~~~~l~V~v~~~-~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f 138 (159)
T PF04862_consen 70 SQTFTTVPGSTYTLTFSLA---RNCAQSESLSVSVGGQ-FSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTF 138 (159)
T ss_pred EEEEEccCCCEEEEEEEec---CCCCCCccEEEEEecc-cceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEE
Confidence 9999999999999999997 55654 566776653 58888888764 5679999999999665555544
No 5
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.84 E-value=1.1e-07 Score=77.47 Aligned_cols=114 Identities=25% Similarity=0.295 Sum_probs=76.1
Q ss_pred ccceecCCccccCccCCCCCCceeeCCCCCCCCCCCCCcEEeeec-eeeEeecCCcccCCCceeEEeecCCc---ceeeE
Q 039909 195 VNILKNGNFEEGPYVFPNASWGVLIPPKIEDDHSPLPGWIIESLK-AVKYIDLKHFFVPEGRRAIELVAGKE---SALTQ 270 (339)
Q Consensus 195 ~Nll~NG~FEegp~~~p~~~~gvl~p~~~~~~~splpgW~v~s~k-~V~yid~~h~~vp~G~~aveLv~g~e---~ai~Q 270 (339)
.|||+||+||+ ..+.+|...... +...+|.. .|.+++.+-.... +.+.|
T Consensus 1 ~nli~N~~Fe~----------------------~~~~~W~~~~~~~~~~~~~~~-----~g~~~l~v~~~~~~~~~~~~~ 53 (131)
T PF02018_consen 1 GNLIKNGGFED----------------------GGLSGWSFWGNSGASASVDNA-----SGNYSLKVSNRSATWDGQSQQ 53 (131)
T ss_dssp GBSSSSTTSTT----------------------TSTTTEEEESSTTEEEEEEEC-----SSSEEEEEECCSSGCGEEEEE
T ss_pred CCEEECCCccC----------------------CCCCCCEEccCCCEEEEEEcC-----CCeEEEEEECCCCCcccccee
Confidence 49999999998 234678886522 35566654 8999998865544 33333
Q ss_pred E-EEccCCCeEEEEEEeccCCCCCCcceEEEEEecCC--eeEEEE-EeCCccceEEEEEEEEEccceeEEEe
Q 039909 271 V-VKTEVNKTYALSFAVGDAGNGCAGTLGVEAYAGRD--NVKVTY-ASKGKGGFKKALLRFKAVSPRTRIMF 338 (339)
Q Consensus 271 ~-v~T~~g~~Y~ltFsvgda~n~c~g~~~v~a~ag~~--~~~~~~-~s~g~gg~~~~~~~F~A~~~~Trv~F 338 (339)
. +...+|++|+|+|-+=-... ..+.+.+..... ...+.. ....++.|++.+++|++..+-.++.|
T Consensus 54 ~~~~l~~G~~Y~~s~~vk~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l 122 (131)
T PF02018_consen 54 QTISLKPGKTYTVSFWVKADSG---GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRL 122 (131)
T ss_dssp EEEEE-TTSEEEEEEEEEESSS---EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEE
T ss_pred cceEecCCCEEEEEEEEEeCCC---CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEE
Confidence 3 67899999999999833222 455555555444 333433 34555789999999999966665554
No 6
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.66 E-value=2.1e-06 Score=70.01 Aligned_cols=115 Identities=20% Similarity=0.408 Sum_probs=70.0
Q ss_pred CCcccCCCCCCCCCCCCCCccEEecCCCCCCcEEEee---EEEEeCCCcCCCceEecCCCCeEEEc-CCC---ceeeE--
Q 039909 23 DGLLPNGNFEYGPKRSQMKGTVVTHPNAIPNWQISGY---VEYIKSGHKQGDMLLIVPEGVFAVRL-GNE---ASIKQ-- 93 (339)
Q Consensus 23 ~nLL~NG~FE~gP~~~~~~gt~v~g~s~IPgW~i~G~---VeyI~sg~~~g~m~~~vP~G~~AVeL-G~e---~sI~Q-- 93 (339)
.|||.||+||++ .+.+|...+. ...++ .++|.+++++ +.. ..+.|
T Consensus 1 ~nli~N~~Fe~~---------------~~~~W~~~~~~~~~~~~~-----------~~~g~~~l~v~~~~~~~~~~~~~~ 54 (131)
T PF02018_consen 1 GNLIKNGGFEDG---------------GLSGWSFWGNSGASASVD-----------NASGNYSLKVSNRSATWDGQSQQQ 54 (131)
T ss_dssp GBSSSSTTSTTT---------------STTTEEEESSTTEEEEEE-----------ECSSSEEEEEECCSSGCGEEEEEE
T ss_pred CCEEECCCccCC---------------CCCCCEEccCCCEEEEEE-----------cCCCeEEEEEECCCCCccccceec
Confidence 389999999982 2457777542 22332 2278888888 221 23333
Q ss_pred EEEecCCCeEEEEEEecCCccccceEEEEEeccccCCCceeEeEEeeecCCCeeEEEEEEEEc--cceEEEEEEC
Q 039909 94 NIKVTKGRFYSMTFSAARTCAQEEKLNVSVSPNLETNDWAILPMQTMYSNNGWDSYAWAFVAD--AEEVEITIHN 166 (339)
Q Consensus 94 ~~~t~~G~~Y~LTFsaartCa~~~~l~Vsv~~~~~~~~s~~~~~qt~y~s~GW~~~s~~F~A~--~~~t~L~F~s 166 (339)
.+.+.+|+.|+|+|.+-.... ..+.+.+.... ......+..+..-.+..|+.++..|++. .+.++|.|+.
T Consensus 55 ~~~l~~G~~Y~~s~~vk~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~ 126 (131)
T PF02018_consen 55 TISLKPGKTYTVSFWVKADSG--GTVSVSLRDED-GSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEI 126 (131)
T ss_dssp EEEE-TTSEEEEEEEEEESSS--EEEEEEEEESS-TTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEE
T ss_pred ceEecCCCEEEEEEEEEeCCC--CEEEEEEEEcC-CCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEe
Confidence 468999999999999833222 44666665421 0011223222333567899999999888 4555677765
No 7
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=81.89 E-value=12 Score=30.97 Aligned_cols=85 Identities=13% Similarity=0.024 Sum_probs=42.9
Q ss_pred CCCeEEEEEEecCCccccceEEEEEeccccCCCceeEeEE-eeecCCCeeEEEEEEEEccceEEEEEECCCCCCCCCCCc
Q 039909 99 KGRFYSMTFSAARTCAQEEKLNVSVSPNLETNDWAILPMQ-TMYSNNGWDSYAWAFVADAEEVEITIHNPGVEEDPACGP 177 (339)
Q Consensus 99 ~G~~Y~LTFsaartCa~~~~l~Vsv~~~~~~~~s~~~~~q-t~y~s~GW~~~s~~F~A~~~~t~L~F~s~g~~~~~~CGP 177 (339)
....+-|+|.+-..-.....|+|.+.... ......-.. +.-....|....+.+.+.....+|+|....- .+..-.=
T Consensus 70 ~~~~~cl~F~y~~~g~~~~~L~V~v~~~~--~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~~~~-~~~~~~i 146 (160)
T PF00629_consen 70 ASGNSCLSFWYYMYGSSVGTLRVYVREES--TGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEAIRG-SSYRGDI 146 (160)
T ss_dssp -SS--EEEEEEEEE-SSSEEEEEEEEETT------S-SEEE-----SSEEEEEEEE---TS-EEEEEEEEE---SS--EE
T ss_pred ccccceeEEEEeeccccceeeEEEEEecC--CccceeeeeecCCCcCCccceEEEcccccccceEEEEEEEc-CCCceEE
Confidence 33466699998332222355888887621 011111111 1113457999999999999999999997421 1112345
Q ss_pred ceeEeEEee
Q 039909 178 LIDSVALKV 186 (339)
Q Consensus 178 vID~VaV~~ 186 (339)
.||||.|..
T Consensus 147 aiDdi~~~~ 155 (160)
T PF00629_consen 147 AIDDISLSP 155 (160)
T ss_dssp EEEEEEEES
T ss_pred EEEEEEEeC
Confidence 699999974
No 8
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=78.96 E-value=19 Score=30.56 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=51.7
Q ss_pred CeEEEEEEecCCccccceEEEEEeccccCCCceeEeEEeeec--CCCeeEEEEEEEEccceEEEEEECCCCCCCCCCCcc
Q 039909 101 RFYSMTFSAARTCAQEEKLNVSVSPNLETNDWAILPMQTMYS--NNGWDSYAWAFVADAEEVEITIHNPGVEEDPACGPL 178 (339)
Q Consensus 101 ~~Y~LTFsaartCa~~~~l~Vsv~~~~~~~~s~~~~~qt~y~--s~GW~~~s~~F~A~~~~t~L~F~s~g~~~~~~CGPv 178 (339)
...-|+|.+-..-.....|+|.+... ......++-+..+ ...|....+.+.+.....+|+|....- .+....=.
T Consensus 71 ~~~Cl~F~y~~~g~~~g~L~V~v~~~---~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~~-~~~~g~IA 146 (157)
T cd06263 71 SSHCLSFWYHMYGSGVGTLNVYVREE---GGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRG-SGSRGDIA 146 (157)
T ss_pred CCeEEEEEEEecCCCCCeEEEEEEeC---CCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEEEC-CCccccEE
Confidence 34559999822112245688888652 1111222222222 356999999999998999999998521 22445678
Q ss_pred eeEeEEee
Q 039909 179 IDSVALKV 186 (339)
Q Consensus 179 ID~VaV~~ 186 (339)
||||+|..
T Consensus 147 IDdI~l~~ 154 (157)
T cd06263 147 LDDISLSP 154 (157)
T ss_pred EeEEEEec
Confidence 99999973
No 9
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=75.46 E-value=46 Score=28.90 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=49.9
Q ss_pred CeEEEEEEecCCccccceEEEEEeccccCCCceeEeEEeeec--CCCeeEEEEEEEEccceEEEEEECCCCCCCCCCCcc
Q 039909 101 RFYSMTFSAARTCAQEEKLNVSVSPNLETNDWAILPMQTMYS--NNGWDSYAWAFVADAEEVEITIHNPGVEEDPACGPL 178 (339)
Q Consensus 101 ~~Y~LTFsaartCa~~~~l~Vsv~~~~~~~~s~~~~~qt~y~--s~GW~~~s~~F~A~~~~t~L~F~s~g~~~~~~CGPv 178 (339)
..+-|+|.+-..-.....|+|.+... .....-++-+..+ ...|....+.+.......+|+|...- ..+...-=.
T Consensus 75 ~~~cl~F~Y~m~G~~~g~L~V~~~~~---~~~~~~~lw~~~g~~~~~W~~~~v~l~~~~~~fqi~fe~~~-g~~~~g~IA 150 (161)
T smart00137 75 STHCLTFWYYMYGSGSGTLNVYVREN---NGSQDTLLWSRSGTQGGQWLQAEVALSKWQQPFQVVFEGTR-GKGHSGYIA 150 (161)
T ss_pred CCeEEEEEEEecCCCCCEEEEEEEeC---CCCCceEeEEEcCCCCCceEEEEEEecCCCCcEEEEEEEEE-cCCccceEE
Confidence 35679999822212234588777520 0111112222222 23599999999988888999999842 123345568
Q ss_pred eeEeEEee
Q 039909 179 IDSVALKV 186 (339)
Q Consensus 179 ID~VaV~~ 186 (339)
||||+|..
T Consensus 151 iDDI~i~~ 158 (161)
T smart00137 151 LDDILLSN 158 (161)
T ss_pred EeEEEeec
Confidence 99999974
No 10
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=63.74 E-value=83 Score=26.48 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=11.7
Q ss_pred EEEEEEEEccceeEEEe
Q 039909 322 KALLRFKAVSPRTRIMF 338 (339)
Q Consensus 322 ~~~~~F~A~~~~Trv~F 338 (339)
+..++|++....|+|+|
T Consensus 99 ~v~~~~~~~~~~T~lt~ 115 (146)
T cd08895 99 TMTWTLSPVSGGTDVTI 115 (146)
T ss_pred EEEEEEEecCCCEEEEE
Confidence 56677777777777765
No 11
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=61.96 E-value=68 Score=25.45 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=42.8
Q ss_pred EccCCCeEEEEEEeccCCCCCCcceEEEEEecCCeeEEEEEeCCc--cceEEEEEEEEEccceeEEEe
Q 039909 273 KTEVNKTYALSFAVGDAGNGCAGTLGVEAYAGRDNVKVTYASKGK--GGFKKALLRFKAVSPRTRIMF 338 (339)
Q Consensus 273 ~T~~g~~Y~ltFsvgda~n~c~g~~~v~a~ag~~~~~~~~~s~g~--gg~~~~~~~F~A~~~~Trv~F 338 (339)
...+|..|++ .++.+..+...+.|....-...+.+.+...+. +...+..++|.+...+|+|.+
T Consensus 29 ~~~~Gg~~~~---~~~~g~~~~~~~~v~~~~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~T~l~~ 93 (124)
T PF08327_consen 29 DFRPGGSFRF---MDPDGGEFGFDGTVLEVEPPERIVFTWRMPDDPDGPESRVTFEFEEEGGGTRLTL 93 (124)
T ss_dssp ECSTTEEEEE---EETTSEEEEEEEEEEEEETTTEEEEEEEEETSSSCEEEEEEEEEEEETTEEEEEE
T ss_pred eeecCCEEEE---EecCCCCceeeEEEEEEeCCEEEEEEEEccCCCCCCceEEEEEEEEcCCcEEEEE
Confidence 3466777777 33555555556667767676777777655432 446778899999999999876
No 12
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=57.01 E-value=94 Score=25.93 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=33.9
Q ss_pred cCCCeEEEEEEeccCCCCCCcceEEEEEecCCeeEEEEEeCCccceEEEEEEEEEcc-ceeEEEe
Q 039909 275 EVNKTYALSFAVGDAGNGCAGTLGVEAYAGRDNVKVTYASKGKGGFKKALLRFKAVS-PRTRIMF 338 (339)
Q Consensus 275 ~~g~~Y~ltFsvgda~n~c~g~~~v~a~ag~~~~~~~~~s~g~gg~~~~~~~F~A~~-~~Trv~F 338 (339)
.+|..|+..|.+.+. .....+....-...+.+.+. ..+...+..++|.+.. ..|+|.+
T Consensus 38 ~~Gg~~~~~~~~~~~----~~~g~~~~~~p~~~l~~~w~--~~~~~s~v~~~l~~~~~ggT~ltl 96 (136)
T cd08901 38 EEGKTVTWDWEMYGA----SVPVNVLEIEPNKRIVIEWG--DPGEPTTVEWTFEELDDGRTFVTI 96 (136)
T ss_pred cCCCEEEEEEEccCC----ceEEEEEEEcCCCEEEEEec--CCCCCEEEEEEEEECCCCcEEEEE
Confidence 467788888876442 11233444444444444433 3244566788888877 7888875
No 13
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=56.24 E-value=51 Score=30.62 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=47.7
Q ss_pred CCcEE---Ee---eEEEEeC-CCcCCCceEecCCCCeEEEc--------CCCceeeEEE-----EecCCCeEEEEEEecC
Q 039909 52 PNWQI---SG---YVEYIKS-GHKQGDMLLIVPEGVFAVRL--------GNEASIKQNI-----KVTKGRFYSMTFSAAR 111 (339)
Q Consensus 52 PgW~i---~G---~VeyI~s-g~~~g~m~~~vP~G~~AVeL--------G~e~sI~Q~~-----~t~~G~~Y~LTFsaar 111 (339)
..|++ .| .++|-.. .......+|.+|++...+.+ |.+-+-.+++ .+.+|.+|.|+|.+..
T Consensus 127 ~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~~~l~~~~~~t~~~g~~~~~~~~~~~~~~~v~~~~~y~lt~~~~~ 206 (235)
T PF14900_consen 127 SDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGEGGETLTLTLSGTNKDGESVSKEQTINKDISNVKAGDHYKLTFDPSD 206 (235)
T ss_pred cceEEEEEccCCccEEEeeccCCCCcceEEECCCCCceEEEEEEEEecCCcccccceeEeeccCcccCceEEEEEEeecc
Confidence 66775 22 4777321 11234578999997777776 3222344444 6789999999999984
Q ss_pred CccccceEEEEEec
Q 039909 112 TCAQEEKLNVSVSP 125 (339)
Q Consensus 112 tCa~~~~l~Vsv~~ 125 (339)
.-.+.-.|.|.+..
T Consensus 207 ~~~g~~~i~I~vd~ 220 (235)
T PF14900_consen 207 SSAGSIGITITVDD 220 (235)
T ss_pred CCCCeeEEEEEEeC
Confidence 44556677777765
No 14
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=55.86 E-value=85 Score=29.57 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=32.8
Q ss_pred CCcccCCCCCCCCCCCCCCccEEecCCCCCCcEEE-----e--eEEEEeCCCcCCCceEecCCCCeEEEc-CCC------
Q 039909 23 DGLLPNGNFEYGPKRSQMKGTVVTHPNAIPNWQIS-----G--YVEYIKSGHKQGDMLLIVPEGVFAVRL-GNE------ 88 (339)
Q Consensus 23 ~nLL~NG~FE~gP~~~~~~gt~v~g~s~IPgW~i~-----G--~VeyI~sg~~~g~m~~~vP~G~~AVeL-G~e------ 88 (339)
.|||+||+|.+ |.... +++ .-.....-|-+. | .+-++.++.++-+ .+++. +-+
T Consensus 6 QnLIkN~~F~t-~Lt~e-~~~--as~~T~~~Wfavnde~~G~Tt~a~~~tnD~k~~---------na~~is~~~~~tsWy 72 (212)
T PF15425_consen 6 QNLIKNGDFDT-PLTNE-NTT--ASNTTFGKWFAVNDEWDGATTIAWINTNDQKTG---------NAWGISSWDKQTSWY 72 (212)
T ss_dssp ----SSTT--S-----B--SS--GGGS-TTSEEEEE-S-TTS-EEEEEE-S-TTS----------EEEEETT-SS---TT
T ss_pred hhhhhcCccCc-chhcc-ccC--cCcccccceEEEecccCCceEeeeeccCccccc---------ceEEEeecccCcHHH
Confidence 69999999996 53321 110 012334566552 1 3444544433322 25555 222
Q ss_pred -ceeeEEE-EecCCCeEEEEEEe-cCC
Q 039909 89 -ASIKQNI-KVTKGRFYSMTFSA-ART 112 (339)
Q Consensus 89 -~sI~Q~~-~t~~G~~Y~LTFsa-art 112 (339)
+-+.|.+ .-..-..|.|+|++ +.+
T Consensus 73 kafLaQr~~~gae~~mYtLsF~AkA~t 99 (212)
T PF15425_consen 73 KAFLAQRYTNGAEKGMYTLSFDAKADT 99 (212)
T ss_dssp TEEEEEEE-S---SSEEEEEEEEEESS
T ss_pred HHHHHHHHhcccccceEEEEEEeeccc
Confidence 6678988 33445679999999 443
No 15
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=54.96 E-value=64 Score=24.08 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=29.3
Q ss_pred ecCCCCeEEEc--CCCceeeEEEEecCCCeEEEEEEec
Q 039909 75 IVPEGVFAVRL--GNEASIKQNIKVTKGRFYSMTFSAA 110 (339)
Q Consensus 75 ~vP~G~~AVeL--G~e~sI~Q~~~t~~G~~Y~LTFsaa 110 (339)
.+|.|.|.|++ .+--...+++.+.+|+...|.+.+-
T Consensus 31 ~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 31 DLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred ecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 38899999999 3334577899999999999998874
No 16
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=54.07 E-value=1e+02 Score=25.69 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=27.2
Q ss_pred CCCeEEEEEEeccCCCCCCcceEEEEEecCCeeEEEEEeCCccceEEEEEEEEEccceeEEEe
Q 039909 276 VNKTYALSFAVGDAGNGCAGTLGVEAYAGRDNVKVTYASKGKGGFKKALLRFKAVSPRTRIMF 338 (339)
Q Consensus 276 ~g~~Y~ltFsvgda~n~c~g~~~v~a~ag~~~~~~~~~s~g~gg~~~~~~~F~A~~~~Trv~F 338 (339)
+|-.|++.+. +..+..+...+.|....-...+.+++... +.-.+..++|.+....|||.+
T Consensus 45 ~GG~~~~~~~-~~~g~~~~~~g~v~e~~p~~~l~~t~~~~--~~~~~v~~~~~~~~~gT~ltl 104 (139)
T cd08894 45 PGGRWRFVMH-GPDGTDYPNRIVFLEIEPPERIVYDHGSG--PPRFRLTVTFEEQGGKTRLTW 104 (139)
T ss_pred CCCEEEEEEE-CCCCCEecceEEEEEEcCCCEEEEEeccC--CCcEEEEEEEEECCCCEEEEE
Confidence 4445555543 11122222233444443333344433222 223445677777777777754
No 17
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=51.76 E-value=1.3e+02 Score=24.44 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=54.5
Q ss_pred CCeEEEcCCC-cee-eEEEEecCCCeEEEEEEecCCccccceEEEEEeccccCCCceeEeEEeeecCCCeeEEEEEEEEc
Q 039909 79 GVFAVRLGNE-ASI-KQNIKVTKGRFYSMTFSAARTCAQEEKLNVSVSPNLETNDWAILPMQTMYSNNGWDSYAWAFVAD 156 (339)
Q Consensus 79 G~~AVeLG~e-~sI-~Q~~~t~~G~~Y~LTFsaartCa~~~~l~Vsv~~~~~~~~s~~~~~qt~y~s~GW~~~s~~F~A~ 156 (339)
|.+.+....+ +.| ...|.+..+..|.|++.++..-.. ..+.+.+... .+...+.+++....+-..|...+......
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~-~~~~l~id~~-~g~~~~~~~~~~tg~w~~~~~~~~~v~l~ 98 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG-GTIELRIDGP-DGTLIGTVSLPPTGGWDTWQTVSVSVKLP 98 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS-EEEEEEETTT-TSEEEEEEEEE-ESSTTEEEEEEEEEEEE
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC-cEEEEEECCC-CCcEEEEEEEcCCCCccccEEEEEEEeeC
Confidence 5666666222 223 334888999999999998543322 4688888640 01122445443221122355555555444
Q ss_pred cceEEEEEECCCCCCCCCCCcceeEeEEe
Q 039909 157 AEEVEITIHNPGVEEDPACGPLIDSVALK 185 (339)
Q Consensus 157 ~~~t~L~F~s~g~~~~~~CGPvID~VaV~ 185 (339)
.-.=+|.|...+-. .|.+=||.+.+.
T Consensus 99 ~G~h~i~l~~~~~~---~~~~niD~~~f~ 124 (125)
T PF03422_consen 99 AGKHTIYLVFNGGD---GWAFNIDYFQFT 124 (125)
T ss_dssp SEEEEEEEEESSSS---SB-EEEEEEEEE
T ss_pred CCeeEEEEEEECCC---CceEEeEEEEEE
Confidence 44444555553211 177889988875
No 18
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=49.20 E-value=93 Score=23.18 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=25.9
Q ss_pred cCCCceeEEeecCCcceeeEEEEccCCCeEEEEEEe
Q 039909 251 VPEGRRAIELVAGKESALTQVVKTEVNKTYALSFAV 286 (339)
Q Consensus 251 vp~G~~aveLv~g~e~ai~Q~v~T~~g~~Y~ltFsv 286 (339)
+|.|.+.|++-...--...+.|..-+|+...|.+.|
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 677788888755555556777777778887777765
No 19
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=47.99 E-value=1.5e+02 Score=27.98 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=33.7
Q ss_pred cccceecCCccccCccCCCCCCceeeCCCCCCCCCCCCCcEEeee-----ceeeEeecCCcccCCCceeEEeecCCc---
Q 039909 194 GVNILKNGNFEEGPYVFPNASWGVLIPPKIEDDHSPLPGWIIESL-----KAVKYIDLKHFFVPEGRRAIELVAGKE--- 265 (339)
Q Consensus 194 ~~Nll~NG~FEegp~~~p~~~~gvl~p~~~~~~~splpgW~v~s~-----k~V~yid~~h~~vp~G~~aveLv~g~e--- 265 (339)
..||||||+|.+ |-.+-+.+. ..--+.-|-++-. -++-++.+..- .=-.|+++ ++-+
T Consensus 5 AQnLIkN~~F~t-~Lt~e~~~a----------s~~T~~~Wfavnde~~G~Tt~a~~~tnD~---k~~na~~i-s~~~~~t 69 (212)
T PF15425_consen 5 AQNLIKNGDFDT-PLTNENTTA----------SNTTFGKWFAVNDEWDGATTIAWINTNDQ---KTGNAWGI-SSWDKQT 69 (212)
T ss_dssp -----SSTT--S-----B-SSG----------GGS-TTSEEEEE-S-TTS-EEEEEE-S-T---TS-EEEEE-TT-SS--
T ss_pred hhhhhhcCccCc-chhccccCc----------CcccccceEEEecccCCceEeeeeccCcc---cccceEEE-eecccCc
Confidence 469999999994 554433221 1223556766521 23444433321 12235665 3333
Q ss_pred ----ceeeEEE-EccCCCeEEEEEEe
Q 039909 266 ----SALTQVV-KTEVNKTYALSFAV 286 (339)
Q Consensus 266 ----~ai~Q~v-~T~~g~~Y~ltFsv 286 (339)
+-+.|.+ .-....-|.|+|.+
T Consensus 70 sWykafLaQr~~~gae~~mYtLsF~A 95 (212)
T PF15425_consen 70 SWYKAFLAQRYTNGAEKGMYTLSFDA 95 (212)
T ss_dssp -TTTEEEEEEE-S---SSEEEEEEEE
T ss_pred HHHHHHHHHHHhcccccceEEEEEEe
Confidence 6789999 56778889999996
No 20
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=44.79 E-value=37 Score=27.93 Aligned_cols=37 Identities=22% Similarity=0.484 Sum_probs=29.5
Q ss_pred ceEecCCCCeEEEc---CCCc-----eeeEEEEecCCCeEEEEEE
Q 039909 72 MLLIVPEGVFAVRL---GNEA-----SIKQNIKVTKGRFYSMTFS 108 (339)
Q Consensus 72 m~~~vP~G~~AVeL---G~e~-----sI~Q~~~t~~G~~Y~LTFs 108 (339)
.++.+|.|.|-+++ |... -+...+.+.+|+.|+|--.
T Consensus 36 ~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~ 80 (122)
T PF14344_consen 36 DYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAV 80 (122)
T ss_pred CceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEE
Confidence 35899999999999 5542 3467889999999998665
No 21
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=44.00 E-value=1.6e+02 Score=32.35 Aligned_cols=104 Identities=16% Similarity=0.333 Sum_probs=60.9
Q ss_pred CCCeEEEc--CCC--ceeeEEEEecCCCeEEEEEEecCCccc---cceEE-EEEeccccCCCceeEeEEee------ec-
Q 039909 78 EGVFAVRL--GNE--ASIKQNIKVTKGRFYSMTFSAARTCAQ---EEKLN-VSVSPNLETNDWAILPMQTM------YS- 142 (339)
Q Consensus 78 ~G~~AVeL--G~e--~sI~Q~~~t~~G~~Y~LTFsaartCa~---~~~l~-Vsv~~~~~~~~s~~~~~qt~------y~- 142 (339)
+|.++.=- |+. ..+.+.|.+..++.=+|+|.+--.-+. -..+. |+... +..+..++..+. .+
T Consensus 339 ~G~~~w~Sg~Gd~l~~tLt~~vdLp~~s~AtLsfk~wydIE~dyDy~~VevvStdG---g~Twt~~~g~~~~~~~~~~~~ 415 (645)
T PF05547_consen 339 SGSYAWYSGSGDDLNNTLTRSVDLPAASSATLSFKAWYDIEADYDYAYVEVVSTDG---GKTWTPLPGNTTGNGNPNGGS 415 (645)
T ss_pred CCceEEEECCCcchhhheeeeeccCCCCCeEEEeehheecccCCceEEEEEEEcCC---CceeEecCccccccCCCCCCC
Confidence 56655544 332 567888887777777899986211111 12344 44433 223333433221 12
Q ss_pred CCCeeEEEEEEEE-ccceEEEEEECCCCCCCC--CCCcceeEeEEee
Q 039909 143 NNGWDSYAWAFVA-DAEEVEITIHNPGVEEDP--ACGPLIDSVALKV 186 (339)
Q Consensus 143 s~GW~~~s~~F~A-~~~~t~L~F~s~g~~~~~--~CGPvID~VaV~~ 186 (339)
+.+|...++...| .+.+++|.|+=. .|.. .-|-+||||+|..
T Consensus 416 sg~Wv~~~~DLSayAGqtV~LrFrY~--TD~~v~~~G~~vDdi~v~~ 460 (645)
T PF05547_consen 416 SGGWVDASFDLSAYAGQTVQLRFRYV--TDGGVAGRGFYVDDIRVTA 460 (645)
T ss_pred ccceeEeEeccccccCCeEEEEEEEE--cCCCccCCcEEEEEEEEEE
Confidence 2579999999987 456788999852 1211 2589999999973
No 22
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=43.28 E-value=1.5e+02 Score=22.66 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=39.9
Q ss_pred ccCCCeEEEEEEeccCCCCCCcceEEEEEecCCeeEEEEE-eCCccceEEEEEEEEEc
Q 039909 274 TEVNKTYALSFAVGDAGNGCAGTLGVEAYAGRDNVKVTYA-SKGKGGFKKALLRFKAV 330 (339)
Q Consensus 274 T~~g~~Y~ltFsvgda~n~c~g~~~v~a~ag~~~~~~~~~-s~g~gg~~~~~~~F~A~ 330 (339)
..+|..+++++.|-+.|........|..+..+....-.+- +-..|..++..+.+++.
T Consensus 15 ~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 15 VVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp EETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred ccCCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 4789999999999998888888899998887776533332 34456677777777764
No 23
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=41.51 E-value=2.2e+02 Score=24.04 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=41.0
Q ss_pred eEEEEEEeccCCCCCCcceEEEEEecCC-eeEEEEEeCCc--cceEEEEEEEEEccceeEEEe
Q 039909 279 TYALSFAVGDAGNGCAGTLGVEAYAGRD-NVKVTYASKGK--GGFKKALLRFKAVSPRTRIMF 338 (339)
Q Consensus 279 ~Y~ltFsvgda~n~c~g~~~v~a~ag~~-~~~~~~~s~g~--gg~~~~~~~F~A~~~~Trv~F 338 (339)
..-|+|..==.+.. .+.+.|.+..... ....-++.++. ..|+++.+++.+....-+|.|
T Consensus 72 ~~Cl~F~y~~~g~~-~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~f 133 (157)
T cd06263 72 SHCLSFWYHMYGSG-VGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVF 133 (157)
T ss_pred CeEEEEEEEecCCC-CCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEE
Confidence 34488876333332 6788888877665 33444455555 569999999999888888887
No 24
>cd08545 YcnI_like Reeler-like domain of YcnI and similar proteins. YcnI is a copper-responsive gene of Bacillus subtilis. It is homologous to an uncharacterized protein from Nocardia farcinica, which shares a conserved three-dimensional structure with cohesins and the reeler domain. Some members in this YcnI_like family have C-terminal domains (DUF461) that may bind copper.
Probab=40.36 E-value=44 Score=30.02 Aligned_cols=44 Identities=20% Similarity=0.571 Sum_probs=29.9
Q ss_pred ecCCCeEEEEEEecCCcccc--ceEEEEEeccccCCCceeEeEEeeecCCCeeE
Q 039909 97 VTKGRFYSMTFSAARTCAQE--EKLNVSVSPNLETNDWAILPMQTMYSNNGWDS 148 (339)
Q Consensus 97 t~~G~~Y~LTFsaartCa~~--~~l~Vsv~~~~~~~~s~~~~~qt~y~s~GW~~ 148 (339)
...|++|.|+|.+...|.+. -+|+|.++..+ ...+. -.+-||+.
T Consensus 12 a~aGs~~~~tfrVPhecdg~~Ttkv~V~lP~gv-------~~v~p-~p~pGWt~ 57 (152)
T cd08545 12 AAAGSYYKLTFRVPHGCDGAATTKVRVKLPEGV-------ASVKP-QPKPGWTV 57 (152)
T ss_pred CCCCceEEEEEEccCCCCCCCceEEEEEcCCCc-------cccce-ecCCCCEE
Confidence 45799999999999999764 46777776522 11121 25678975
No 25
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=37.74 E-value=2.2e+02 Score=26.65 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=14.4
Q ss_pred EEEEecCCCeEEEEEEe
Q 039909 93 QNIKVTKGRFYSMTFSA 109 (339)
Q Consensus 93 Q~~~t~~G~~Y~LTFsa 109 (339)
..+...+|+.|+|+..+
T Consensus 92 ~~~~~~~G~~Y~L~V~~ 108 (298)
T PF14054_consen 92 NSFRGRPGRTYRLEVET 108 (298)
T ss_pred ccccccCCCEEEEEEEE
Confidence 35577899999999998
No 26
>PF07987 DUF1775: Domain of unkown function (DUF1775); InterPro: IPR012533 GLE1 is an essential nuclear export factor involved in RNA export.; PDB: 3ESM_A.
Probab=37.15 E-value=66 Score=28.67 Aligned_cols=44 Identities=20% Similarity=0.544 Sum_probs=23.1
Q ss_pred ecCCCeEEEEEEecCCcccc--ceEEEEEeccccCCCceeEeEEeeecCCCeeE
Q 039909 97 VTKGRFYSMTFSAARTCAQE--EKLNVSVSPNLETNDWAILPMQTMYSNNGWDS 148 (339)
Q Consensus 97 t~~G~~Y~LTFsaartCa~~--~~l~Vsv~~~~~~~~s~~~~~qt~y~s~GW~~ 148 (339)
..+|++|.++|.+...|.+. -+|+|.+.. + +..-..-..-||+.
T Consensus 9 a~~G~~~~~tf~Vp~e~d~a~Tt~v~v~lP~-------g-v~~v~~~p~pGWt~ 54 (145)
T PF07987_consen 9 AAAGSYYKLTFRVPHECDGAATTKVRVTLPE-------G-VTSVSPQPKPGWTV 54 (145)
T ss_dssp -BTT--EEEEEEEE---SS--EEEEEEEEEE---------ESEEEE---TTEEE
T ss_pred cCCCceEEEEEEecCCCCCCCceEEEEECCC-------c-ccccceeeCCCCEE
Confidence 45899999999999999764 477777776 2 22112225679976
No 27
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=36.33 E-value=2.6e+02 Score=23.43 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=11.3
Q ss_pred EEEEEEEEEccceeEEE
Q 039909 321 KKALLRFKAVSPRTRIM 337 (339)
Q Consensus 321 ~~~~~~F~A~~~~Trv~ 337 (339)
.+..++|++..+.|||+
T Consensus 94 ~~v~~~~~~~~~gT~Lt 110 (146)
T cd08896 94 MTAIITFEDEGGGTRYT 110 (146)
T ss_pred EEEEEEEEecCCcEEEE
Confidence 44567777777777765
No 28
>PRK15252 putative fimbrial-like adhesin protein StcD; Provisional
Probab=35.07 E-value=72 Score=32.41 Aligned_cols=98 Identities=19% Similarity=0.281 Sum_probs=53.4
Q ss_pred hceeeeccCCcccCCCCCCCCCCCCCCccEEecCCCCCCcEEEeeEEEEeCCCcCCCceEecCCCCeEEEcCC----Cce
Q 039909 15 CHVVLSVTDGLLPNGNFEYGPKRSQMKGTVVTHPNAIPNWQISGYVEYIKSGHKQGDMLLIVPEGVFAVRLGN----EAS 90 (339)
Q Consensus 15 ~~~~~~~~~nLL~NG~FE~gP~~~~~~gt~v~g~s~IPgW~i~G~VeyI~sg~~~g~m~~~vP~G~~AVeLG~----e~s 90 (339)
|.......++++...+|-..+..+....+...|. .=+-.+.| +.-++-+.++.-+.|++-|+|-- ...
T Consensus 22 C~~~~t~~~~~i~~~~l~~~~~~s~~~~~~f~gt----~Cs~~~~v----t~~~~~~~ivGf~~~k~~l~~~it~~~~n~ 93 (344)
T PRK15252 22 CYSELSVQHNLVVQGDFALNQTQSATYEHNFNDS----SCVSTNTI----TPMSPSDIIVGLYNDTIKLNLHFEWTNKNN 93 (344)
T ss_pred ecCCcccccCceeecccccCCcceeEEEeeccCC----cccCCCcc----CCCCCccEEEEecCCeEEEEEEEEecCCCc
Confidence 4444447789999998886543211111111111 00111122 45567788888899999999921 122
Q ss_pred eeEEEEecCC---CeEEEEEEecCCccccceEEEEEec
Q 039909 91 IKQNIKVTKG---RFYSMTFSAARTCAQEEKLNVSVSP 125 (339)
Q Consensus 91 I~Q~~~t~~G---~~Y~LTFsaartCa~~~~l~Vsv~~ 125 (339)
| .+.-..| ..|+|+|..... .+.++|++.+
T Consensus 94 i--~l~n~~g~~~a~ytv~~t~~~s---~~~v~vsa~~ 126 (344)
T PRK15252 94 I--TLSNNQTSFTSGYSVTVTPAAS---NAKVNVSAGS 126 (344)
T ss_pred e--eccCCCceEecceEEEEEEccC---CccEEEecCC
Confidence 3 1211111 279999998532 2367777654
No 29
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=34.79 E-value=2.9e+02 Score=24.51 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=38.9
Q ss_pred CCCeEEEEEEec-CCc-cccceEEEEEeccccCCCceeEe--E-Eee-ec------------CCCeeEEEEEEEEccceE
Q 039909 99 KGRFYSMTFSAA-RTC-AQEEKLNVSVSPNLETNDWAILP--M-QTM-YS------------NNGWDSYAWAFVADAEEV 160 (339)
Q Consensus 99 ~G~~Y~LTFsaa-rtC-a~~~~l~Vsv~~~~~~~~s~~~~--~-qt~-y~------------s~GW~~~s~~F~A~~~~t 160 (339)
+|. .+|+|.+. ..+ ...|...|.+... +.....|. + .|. .. ..-|..+...+.+-..
T Consensus 71 ~g~-~~i~f~v~~~~~~~~~E~y~V~~Stt--g~~~~~f~~i~e~t~~~~~~~~~~~~~~~~~~~w~~~~v~Lp~gt~-- 145 (167)
T PF07675_consen 71 SGA-QTISFWVKSQDASYGPEHYEVLYSTT--GNNIADFTTILEETITANTFTNAEKIEGKTQGEWTERTVDLPAGTK-- 145 (167)
T ss_dssp TT--EEEEEEEEECTTTC---EEEEEEESS---SSGGGEEECEEEE---SS-SSSSSSSSS-----EEEEEEE-TT----
T ss_pred CCC-CEEEEEEEeccCCCCCceEEEEEecC--CCChhheEEeeeeeecccccccccccccccCccEEEEEEeCCCCCc--
Confidence 675 69999983 221 2367777777641 22223332 1 121 11 1349999999965555
Q ss_pred EEEEECCCCCCCCCCCcceeEeEE
Q 039909 161 EITIHNPGVEEDPACGPLIDSVAL 184 (339)
Q Consensus 161 ~L~F~s~g~~~~~~CGPvID~VaV 184 (339)
.+.||.... .| ...=+||||.|
T Consensus 146 Y~afrh~~~-td-~~~l~iDDV~v 167 (167)
T PF07675_consen 146 YFAFRHYNS-TD-AFYLMIDDVTV 167 (167)
T ss_dssp EEEEEEES---S-S-EEEEEEEEE
T ss_pred EEEEEeccC-CC-ceEEEeccEEC
Confidence 899975322 22 34678999987
No 30
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=34.13 E-value=1.4e+02 Score=26.43 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=46.5
Q ss_pred CceeeCCCCCCCCCCCCCcEEeeeceeeE-------eecCCcccCCCceeEEeecCCcceeeEEEEccCCCeEEEEEEec
Q 039909 215 WGVLIPPKIEDDHSPLPGWIIESLKAVKY-------IDLKHFFVPEGRRAIELVAGKESALTQVVKTEVNKTYALSFAVG 287 (339)
Q Consensus 215 ~gvl~p~~~~~~~splpgW~v~s~k~V~y-------id~~h~~vp~G~~aveLv~g~e~ai~Q~v~T~~g~~Y~ltFsvg 287 (339)
.|||.+|. .-|++|=+|+ |||.+= .=+.+-.=..|.+++++--| .|+++..+.
T Consensus 6 SGvL~dg~----G~pv~g~~I~-L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG---------------~Y~V~l~~~ 65 (134)
T PF08400_consen 6 SGVLKDGA----GKPVPGCTIT-LKARRTSSTVVVGTVASVVTGEAGEYSFDVEPG---------------VYRVTLKVE 65 (134)
T ss_pred EEEEeCCC----CCcCCCCEEE-EEEccCchheEEEEEEEEEcCCCceEEEEecCC---------------eEEEEEEEC
Confidence 37887644 5589999998 777542 11111112267777777555 488888887
Q ss_pred cCCCCCCcceEEEEEecCCee
Q 039909 288 DAGNGCAGTLGVEAYAGRDNV 308 (339)
Q Consensus 288 da~n~c~g~~~v~a~ag~~~~ 308 (339)
.-.-.|.|.+.|.--..+.|+
T Consensus 66 g~~~~~vG~I~V~~dS~pGTL 86 (134)
T PF08400_consen 66 GRPPVYVGDITVYEDSKPGTL 86 (134)
T ss_pred CCCceeEEEEEEecCCCCCcH
Confidence 766666788877755444443
No 31
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=30.59 E-value=80 Score=25.91 Aligned_cols=51 Identities=37% Similarity=0.548 Sum_probs=36.1
Q ss_pred ceeeEee-cCCcccCCCceeEEe-ecCCcc-----eeeEEEEccCCCeEEEEEEeccCC
Q 039909 239 KAVKYID-LKHFFVPEGRRAIEL-VAGKES-----ALTQVVKTEVNKTYALSFAVGDAG 290 (339)
Q Consensus 239 k~V~yid-~~h~~vp~G~~aveL-v~g~e~-----ai~Q~v~T~~g~~Y~ltFsvgda~ 290 (339)
+.+.|=+ +....+|.|.+-|++ -+|... .+...+.-.+|+.|+| |.+|+++
T Consensus 27 ~~v~y~~~s~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl-~~~g~~~ 84 (122)
T PF14344_consen 27 SNVAYGQASDYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTL-FAVGTAA 84 (122)
T ss_pred ccCCCCcccCceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEE-EEECCCC
Confidence 3444432 335689999999999 556552 4567788889999998 5567766
No 32
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=27.91 E-value=3.4e+02 Score=22.16 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=29.3
Q ss_pred eEEEEEEeccCCCCCCcceEEEEEecC---CeeEEEEEeCCccceEEEEEEEEEccceeEEEe
Q 039909 279 TYALSFAVGDAGNGCAGTLGVEAYAGR---DNVKVTYASKGKGGFKKALLRFKAVSPRTRIMF 338 (339)
Q Consensus 279 ~Y~ltFsvgda~n~c~g~~~v~a~ag~---~~~~~~~~s~g~gg~~~~~~~F~A~~~~Trv~F 338 (339)
.+-|+|..=-.+. ..+.+.|.+.... ...-..........|+++.+++.+....-+|.|
T Consensus 73 ~~cl~F~y~~~g~-~~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f 134 (160)
T PF00629_consen 73 NSCLSFWYYMYGS-SVGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIF 134 (160)
T ss_dssp --EEEEEEEEE-S-SSEEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEE
T ss_pred cceeEEEEeeccc-cceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEE
Confidence 4448887622222 1366777766651 222222222334679999999999988888887
No 33
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.20 E-value=3.2e+02 Score=21.64 Aligned_cols=6 Identities=33% Similarity=1.032 Sum_probs=3.1
Q ss_pred CCCCcE
Q 039909 229 PLPGWI 234 (339)
Q Consensus 229 plpgW~ 234 (339)
-++.|+
T Consensus 24 ~~~~w~ 29 (141)
T cd07822 24 SYPEWN 29 (141)
T ss_pred cccccC
Confidence 345555
No 34
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=26.64 E-value=3.4e+02 Score=23.21 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=15.2
Q ss_pred EEEEEeCCccceEEEEEEEEEccceeEEEe
Q 039909 309 KVTYASKGKGGFKKALLRFKAVSPRTRIMF 338 (339)
Q Consensus 309 ~~~~~s~g~gg~~~~~~~F~A~~~~Trv~F 338 (339)
.+.|...+.+.-....++|.+....|+|.+
T Consensus 77 ~l~~~~~~~~~~~~~~~~l~~~~~gT~v~~ 106 (157)
T cd08899 77 LLAFTWGEGGGESEVRFELAPEGDGTRLTL 106 (157)
T ss_pred EEEEEecCCCCCceEEEEEEEcCCCEEEEE
Confidence 333333333233345566666666666654
No 35
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=26.25 E-value=3.5e+02 Score=21.84 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=36.6
Q ss_pred CceeEEeecCCcceeeEEEEccCCCeEEEEEEeccCCCCCCcceEEEEEe--cCCeeEEEEEeCCc-cceEEEEEEEEE
Q 039909 254 GRRAIELVAGKESALTQVVKTEVNKTYALSFAVGDAGNGCAGTLGVEAYA--GRDNVKVTYASKGK-GGFKKALLRFKA 329 (339)
Q Consensus 254 G~~aveLv~g~e~ai~Q~v~T~~g~~Y~ltFsvgda~n~c~g~~~v~a~a--g~~~~~~~~~s~g~-gg~~~~~~~F~A 329 (339)
|.+.|-.+...+...-..|.--.+-.|+|++.+...... +.+.|.+-- |....++++.++|. ..|+..+...+.
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~--~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l 97 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG--GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKL 97 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS--EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEE
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC--cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEee
Confidence 555555544444444445776677778888777544443 333333322 23445566545433 124444433333
No 36
>PF08358 Flexi_CP_N: Carlavirus coat; InterPro: IPR013569 This domain is found together with the viral coat protein domain (IPR000052 from INTERPRO) in coat/capsid proteins of the plant infecting Carlavirus. It is required for genome encapsidation by forming ribonucleoprotein complexes along with TGB1 helicase and viral RNA. The N- and the C terminus of this coat protein can be exposed on the surface of the virus particle. The central core sequence may be important in maintaining correct tertiary structure of the coat protein and/or play a role in the interaction with the viral RNA. Coat proteins are often used to distinguish between Carlavirus isolates. In the coat protein amino acid sequences of definitive and tentative species of carlaviruses, there is a region of seven amino acids (GLGVPTE) that are conserved []. The complete coat protein (CP) sequences of 29 Indian Chrysanthemum virus B (CVB) isolates were highly heterogeneous, sharing nucleotide sequence identities of 74-98% [, ].
Probab=25.75 E-value=46 Score=24.93 Aligned_cols=35 Identities=20% Similarity=0.080 Sum_probs=22.7
Q ss_pred cceecCCccccCccCCCCCCceeeCCCCCCCCCCCCCcEEe
Q 039909 196 NILKNGNFEEGPYVFPNASWGVLIPPKIEDDHSPLPGWIIE 236 (339)
Q Consensus 196 Nll~NG~FEegp~~~p~~~~gvl~p~~~~~~~splpgW~v~ 236 (339)
.-|+|++||.|= +.=-+.+.+-.|..++-.-|+|.
T Consensus 16 ~~v~N~~fE~GR------P~l~~~~~mr~d~tN~y~RpSiD 50 (52)
T PF08358_consen 16 SNVTNPGFEIGR------PKLEPSDDMRGDPTNPYSRPSID 50 (52)
T ss_pred CcccccccccCC------cCCcCchhhCCCcCcccCCcccc
Confidence 458999999972 22223455566677777777664
No 37
>PF14122 YokU: YokU-like protein
Probab=24.82 E-value=37 Score=28.06 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=13.2
Q ss_pred ecCCcccCCCceeEEe
Q 039909 245 DLKHFFVPEGRRAIEL 260 (339)
Q Consensus 245 d~~h~~vp~G~~aveL 260 (339)
.+-.|-+|+|.||||+
T Consensus 15 ~tvyWeLpdGtraIeI 30 (87)
T PF14122_consen 15 STVYWELPDGTRAIEI 30 (87)
T ss_pred ceEEEEcCCCceEEEe
Confidence 3345789999999998
No 38
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=24.01 E-value=2e+02 Score=23.87 Aligned_cols=38 Identities=11% Similarity=0.336 Sum_probs=27.4
Q ss_pred eEecCCCCeEEEcC-CCceeeEEE-----EecCCCeEEEEEEec
Q 039909 73 LLIVPEGVFAVRLG-NEASIKQNI-----KVTKGRFYSMTFSAA 110 (339)
Q Consensus 73 ~~~vP~G~~AVeLG-~e~sI~Q~~-----~t~~G~~Y~LTFsaa 110 (339)
+|.--+|+-+|+|| --...++.| .+++|+.|.+.|=.+
T Consensus 30 vWVFIn~kLv~DlGG~H~~~~~sV~l~~lgl~~g~~Y~~d~F~~ 73 (90)
T TIGR02148 30 VWVFINNKLVVDIGGQHPAVPGAVDLDTLGLKEGKTYPFDIFYC 73 (90)
T ss_pred EEEEECCEEEEEccCcCCCcccEEEhhhcCCccCcEeeEEEEEE
Confidence 46777899999994 333444444 468999999999653
No 39
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=23.30 E-value=3.6e+02 Score=21.24 Aligned_cols=14 Identities=7% Similarity=0.200 Sum_probs=6.1
Q ss_pred CCcEEeeeceeeEee
Q 039909 231 PGWIIESLKAVKYID 245 (339)
Q Consensus 231 pgW~v~s~k~V~yid 245 (339)
+-|+=. .+.+++.+
T Consensus 27 ~~w~~~-~~~~~~~~ 40 (140)
T cd07821 27 HKWHPA-VASCELEG 40 (140)
T ss_pred hhhccC-cceEEeec
Confidence 444432 34555544
No 40
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=23.11 E-value=3.9e+02 Score=21.28 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=8.3
Q ss_pred EEEEEEEcc-ceeEEEe
Q 039909 323 ALLRFKAVS-PRTRIMF 338 (339)
Q Consensus 323 ~~~~F~A~~-~~Trv~F 338 (339)
..++|.+.. .+|||++
T Consensus 85 ~~~~~~~~~~~~t~l~~ 101 (138)
T cd08862 85 HRHEFEAKPDGGVRVTT 101 (138)
T ss_pred EEEEEEEcCCCcEEEEE
Confidence 445555554 4555543
No 41
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=22.91 E-value=5e+02 Score=27.36 Aligned_cols=115 Identities=22% Similarity=0.259 Sum_probs=65.7
Q ss_pred CCCCeEEEc---C-CCceeeEEEEecCCCeEEEEEEe-----cCCccccceEEEEEeccccCCCceeEeEEeeecCCCee
Q 039909 77 PEGVFAVRL---G-NEASIKQNIKVTKGRFYSMTFSA-----ARTCAQEEKLNVSVSPNLETNDWAILPMQTMYSNNGWD 147 (339)
Q Consensus 77 P~G~~AVeL---G-~e~sI~Q~~~t~~G~~Y~LTFsa-----artCa~~~~l~Vsv~~~~~~~~s~~~~~qt~y~s~GW~ 147 (339)
..+.+.|-+ | +|+-|. ++ -|.+.|+++|+. .-+|. +.+++|.-. ..+++--.- -.-.|-+
T Consensus 150 ag~Dn~v~iWnv~tgeali~--l~-hpd~i~S~sfn~dGs~l~Ttck-DKkvRv~dp------r~~~~v~e~-~~heG~k 218 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALIT--LD-HPDMVYSMSFNRDGSLLCTTCK-DKKVRVIDP------RRGTVVSEG-VAHEGAK 218 (472)
T ss_pred ccCCceEEEEeccCCceeee--cC-CCCeEEEEEeccCCceeeeecc-cceeEEEcC------CCCcEeeec-ccccCCC
Confidence 356667766 2 123222 33 699999999997 23443 667775443 233332222 1344667
Q ss_pred EEEEEEEEccceEEEEEECCCCCCCCCCCcceeEeEEeeecCCCcccccceecCCccccCccCCCCCCceeeCCCCC
Q 039909 148 SYAWAFVADAEEVEITIHNPGVEEDPACGPLIDSVALKVLYPPKRTGVNILKNGNFEEGPYVFPNASWGVLIPPKIE 224 (339)
Q Consensus 148 ~~s~~F~A~~~~t~L~F~s~g~~~~~~CGPvID~VaV~~l~~p~~~~~Nll~NG~FEegp~~~p~~~~gvl~p~~~~ 224 (339)
....-|.+.+.-.+--|.-.. + +-.+|-. .+||=.-+.|+| =++|.|||+|=-++
T Consensus 219 ~~Raifl~~g~i~tTGfsr~s--e-----------Rq~aLwd----p~nl~eP~~~~e-----lDtSnGvl~PFyD~ 273 (472)
T KOG0303|consen 219 PARAIFLASGKIFTTGFSRMS--E-----------RQIALWD----PNNLEEPIALQE-----LDTSNGVLLPFYDP 273 (472)
T ss_pred cceeEEeccCceeeecccccc--c-----------cceeccC----cccccCcceeEE-----eccCCceEEeeecC
Confidence 777777777763333333221 1 0112223 348877788888 58999999984444
No 42
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=20.78 E-value=27 Score=24.40 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=8.2
Q ss_pred eccCCcccCCC
Q 039909 20 SVTDGLLPNGN 30 (339)
Q Consensus 20 ~~~~nLL~NG~ 30 (339)
+...+.+.||+
T Consensus 21 ~~pG~ViING~ 31 (36)
T PF08194_consen 21 ATPGNVIINGK 31 (36)
T ss_pred CCCCeEEECce
Confidence 34678888986
No 43
>PF03684 UPF0179: Uncharacterised protein family (UPF0179); InterPro: IPR005369 The function of this family is unknown, however the proteins contain two cysteine clusters that may be iron sulphur redox centres.
Probab=20.21 E-value=2.2e+02 Score=25.44 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=33.1
Q ss_pred EccCCCeEEEEEEeccCCCCC--C--cceEEEEEecCCeeEEEEEeCCccceEEEEEEEEE
Q 039909 273 KTEVNKTYALSFAVGDAGNGC--A--GTLGVEAYAGRDNVKVTYASKGKGGFKKALLRFKA 329 (339)
Q Consensus 273 ~T~~g~~Y~ltFsvgda~n~c--~--g~~~v~a~ag~~~~~~~~~s~g~gg~~~~~~~F~A 329 (339)
+..+|+.|+++ .|-+....| | |-.+|++--+ .+...-+|+. -+.-..+.|..
T Consensus 37 nLe~Gr~YrI~-~VR~~~h~C~vH~~gV~~VEVee~--pi~~~i~sk~--A~eGs~i~~~~ 92 (142)
T PF03684_consen 37 NLEPGRRYRIV-EVRNNEHPCPVHDGGVVAVEVEEA--PIIALIESKK--AFEGSKITYEP 92 (142)
T ss_pred cCCCCceEEEE-EEcCCCCccceeCCcEEEEEEEeC--CEEEEeccch--hhcCCEEEECC
Confidence 56899999999 999999999 3 3455666655 3444334432 24444444443
Done!