BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039912
SARGKRVHWVGKYSIKMEKYKRAARAVLTPEVGNGLIGELKRGGLWVRTASDKPQATDVL
LRNHLVITHKRRIEYLVVVSDDSDFVEVLLEANLRCLKTVVVGDINDGALKRISYACFSW
WDILMGKARKEAVSVVGKWKDGDVLKRLEWTYDPEVEKKALDWDDGTEGADVDDITLASD
ADFIQKEDGGALMEAGFF

High Scoring Gene Products

Symbol, full name Information P value
AT4G12240 protein from Arabidopsis thaliana 6.4e-44
AT5G52010 protein from Arabidopsis thaliana 2.1e-11

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039912
        (198 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2139119 - symbol:AT4G12240 "AT4G12240" species...   463  6.4e-44   1
TAIR|locus:2173038 - symbol:AT5G52010 "AT5G52010" species...   163  2.1e-11   1


>TAIR|locus:2139119 [details] [associations]
            symbol:AT4G12240 "AT4G12240" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] [GO:0005739 "mitochondrion"
            evidence=IDA] InterPro:IPR007087 InterPro:IPR015880 PROSITE:PS00028
            PROSITE:PS50157 SMART:SM00355 GO:GO:0005739 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008270 GO:GO:0003700 EMBL:AL161533
            EMBL:AL080318 UniGene:At.48849 UniGene:At.66589 InterPro:IPR021139
            Pfam:PF01936 HOGENOM:HOG000240853 EMBL:BT005409 EMBL:AK118936
            IPI:IPI00531382 PIR:T48134 RefSeq:NP_192961.1
            ProteinModelPortal:Q9STI7 SMR:Q9STI7 EnsemblPlants:AT4G12240.1
            GeneID:826832 KEGG:ath:AT4G12240 TAIR:At4g12240 eggNOG:NOG321752
            InParanoid:Q9STI7 OMA:KRAGFWV PhylomeDB:Q9STI7
            ProtClustDB:CLSN2685569 Genevestigator:Q9STI7 Uniprot:Q9STI7
        Length = 364

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 99/204 (48%), Positives = 127/204 (62%)

Query:     1 SARG-KRVHWVGKYSIKMEKYKRAARAVLTPEVGNGLIGELKRGGLWVRTASDKPQATDV 59
             S++G +RV  V KYS+K+EKYKRAAR VLTP+ G GL  ELKR G WV+  SDKP A D 
Sbjct:   153 SSKGHRRVRLVAKYSMKIEKYKRAARNVLTPKEGYGLADELKRAGFWVKMVSDKPDAADK 212

Query:    60 LLRNHLV-ITHKRRIEYXXXXXXXXXXXXXXXEANLRCLKTVVVGDINDGALKRISYACF 118
              L+ HLV +  KR +E                EA  RCL+TVV+GD N+GALKR++   +
Sbjct:   213 ALKEHLVEVMDKREVECVVLVSDDSDFAGILWEAKERCLRTVVIGDSNEGALKRVADVAY 272

Query:   119 SWWDILMGKARKEAVSVVGKWKDGDVLKRLEWTYDPEVEKKA----------LDWDDGTE 168
             SW ++ MGKA+KE   VVGKWKD DVLK+LEWTYDP +EK+            D+DD  E
Sbjct:   273 SWKEVTMGKAKKEVEKVVGKWKDRDVLKKLEWTYDPALEKERGGSCGVWDYEFDYDDEIE 332

Query:   169 -GADVDDITLASDADF--IQKEDG 189
              G +V+ + +    D+  I  EDG
Sbjct:   333 NGTEVEPVEIGDGVDWWKIDTEDG 356


>TAIR|locus:2173038 [details] [associations]
            symbol:AT5G52010 "AT5G52010" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR007087 InterPro:IPR015880
            PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355 EMBL:CP002688
            GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 EMBL:AB015478
            EMBL:AY039592 EMBL:AY129489 IPI:IPI00522595 RefSeq:NP_200014.1
            UniGene:At.9332 ProteinModelPortal:Q9FJ91 SMR:Q9FJ91 IntAct:Q9FJ91
            PRIDE:Q9FJ91 EnsemblPlants:AT5G52010.1 GeneID:835276
            KEGG:ath:AT5G52010 TAIR:At5g52010 HOGENOM:HOG000240853
            InParanoid:Q9FJ91 OMA:DNKPPRG PhylomeDB:Q9FJ91
            ProtClustDB:CLSN2687448 Genevestigator:Q9FJ91 Uniprot:Q9FJ91
        Length = 396

 Score = 163 (62.4 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 46/139 (33%), Positives = 72/139 (51%)

Query:     1 SARGK-RVHWVGKYSIKMEKYKRAARAVLTPEVGNGLIGELKRGGLWVRTASDKPQATDV 59
             S +GK R  +  +Y    EKY  AAR++LTP+VG GL  EL+R G++V+T  DKPQA D 
Sbjct:   188 SLKGKKRQKFKERYVSGNEKYNEAARSLLTPKVGYGLEAELRRAGVYVKTVEDKPQAADW 247

Query:    60 LLRNHLVITHKRRIEYXXXXXXXXXXXXXXXEANLRCLKTVVVGDINDGALKRISYACFS 119
              ++  +  +  R I++               +A    L T+VV D+ D AL R +     
Sbjct:   248 AVKRQIQHSMTRGIDWLVLVSDDKDFSDMLRKAREADLGTLVVSDM-DRALGRHADLWVP 306

Query:   120 WWDILMGKARKEAVSVVGK 138
             W  +  G+  ++ + + GK
Sbjct:   307 WSGVEKGEIGEKDL-IPGK 324


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      198       183   0.00076  110 3  11 22  0.45    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  173 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.51u 0.14s 14.65t   Elapsed:  00:00:01
  Total cpu time:  14.51u 0.14s 14.65t   Elapsed:  00:00:01
  Start:  Thu May  9 17:16:11 2013   End:  Thu May  9 17:16:12 2013

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