BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039912
         (198 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UE9|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
           (Pura) From Burkholderia Thailandensis
 pdb|3UE9|B Chain B, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
           (Pura) From Burkholderia Thailandensis
 pdb|3UE9|C Chain C, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
           (Pura) From Burkholderia Thailandensis
 pdb|3UE9|D Chain D, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
           (Pura) From Burkholderia Thailandensis
          Length = 452

 Score = 30.0 bits (66), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query: 27  VLTPEVGNGLIGELKRGGLWVRTASDKPQATDVLLRNHLVITHKR 71
           VL+PE     IGEL+  GL VR      +AT ++L  H+ I   R
Sbjct: 87  VLSPEALFKEIGELEEAGLSVRERLFISEATTLILPYHIAIDQAR 131


>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
           From Hyperthermophilic Thermotoga Maritima
           F132aL128AI123AD62A MUTANT
          Length = 299

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 127 KARKEAVSVVGKWKDGDVLKRLEWTYDPEVEKKALDWDDGTEGA 170
           KAR+ A++V+GK  + +++++L   Y P  +++ L   +G  GA
Sbjct: 127 KARRAALNVIGKMSEAELIEQLS-RYKPITKEEYLRIVEGKSGA 169


>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
           From Hyperthermophilic Thermotoga Maritima F132aL128A
           MUTANT
 pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
           From Hyperthermophilic Thermotoga Maritima F132aL128A
           MUTANT
          Length = 299

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 127 KARKEAVSVVGKWKDGDVLKRLEWTYDPEVEKKALDWDDGTEGA 170
           KAR+ A++V+GK  + +++++L   Y P  +++ L   +G  GA
Sbjct: 127 KARRAALNVIGKMSEAELIEQLS-RYKPITKEEYLRIVEGKSGA 169


>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
           From Hyperthermophilic Thermotoga Maritima
           F132aL128AI123A MUTANT
          Length = 299

 Score = 28.1 bits (61), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 127 KARKEAVSVVGKWKDGDVLKRLEWTYDPEVEKKALDWDDGTEGA 170
           KAR+ A++V+GK  + +++++L   Y P  +++ L   +G  GA
Sbjct: 127 KARRAALNVIGKMSEAELIEQLS-RYKPITKEEYLRIVEGKSGA 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,891,723
Number of Sequences: 62578
Number of extensions: 225738
Number of successful extensions: 554
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 17
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)