BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039913
         (128 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
          Length = 151

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 56/119 (47%), Gaps = 17/119 (14%)

Query: 1   GHHQTLALA--RADWKETRTAHVITLDIP-------RMKENDVKIEV-------EENXXX 44
           G  +T A A  R DWKET  AHV   D+P       +++  D  + V       E+    
Sbjct: 34  GGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKN 93

Query: 45  XXXXXXXXXXXXFWMQFRMPMSADLEHVKALLENGVLRITVPKLAEEKKSRPKVISISG 103
                       F  +FR+   A +E VKA LENGVL +TVPK AE KK   K I ISG
Sbjct: 94  DKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK-AEVKKPEVKAIQISG 151


>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
          Length = 101

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 14/95 (14%)

Query: 9  ARADWKETRTAHVITLDIP-------RMKENDVKIEV-------EENXXXXXXXXXXXXX 54
          AR DWKET  AHV   D+P       +++  D  + V       E+              
Sbjct: 2  ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSS 61

Query: 55 XXFWMQFRMPMSADLEHVKALLENGVLRITVPKLA 89
            F  +FR+   A +E VKA LENGVL +TVPK A
Sbjct: 62 GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAA 96


>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
          Length = 93

 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 14/93 (15%)

Query: 9  ARADWKETRTAHVITLDIP-------RMKENDVKIEV-------EENXXXXXXXXXXXXX 54
          AR DWKET  AHV   D+P       +++  D  + V       E+              
Sbjct: 1  ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSS 60

Query: 55 XXFWMQFRMPMSADLEHVKALLENGVLRITVPK 87
            F  +FR+   A +E VKA LENGVL +TVPK
Sbjct: 61 GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93


>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
          Length = 100

 Score = 32.3 bits (72), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 13/93 (13%)

Query: 8  LARADWKETRTAHVITLDIPRMKENDVKIEV-------------EENXXXXXXXXXXXXX 54
          + R D KE     V+  D+P +  + +++++             E +             
Sbjct: 4  VPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRY 63

Query: 55 XXFWMQFRMPMSADLEHVKALLENGVLRITVPK 87
            F  +F +P SAD + + A   NGVL I +PK
Sbjct: 64 GSFHRRFALPDSADADGITAAGRNGVLEIRIPK 96


>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
          Length = 103

 Score = 32.0 bits (71), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 13/93 (13%)

Query: 8  LARADWKETRTAHVITLDIPRMKENDVKIEV-------------EENXXXXXXXXXXXXX 54
          + R D KE     V+  D+P +  + +++++             E +             
Sbjct: 7  VPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRY 66

Query: 55 XXFWMQFRMPMSADLEHVKALLENGVLRITVPK 87
            F  +F +P SAD + + A   NGVL I +PK
Sbjct: 67 GSFHRRFALPDSADADGITAAGRNGVLEIRIPK 99


>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
          Length = 114

 Score = 30.4 bits (67), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 1  GHHQT-LALARADWKETRTAHVITLDIPRMKENDVKIEVEE 40
          G H T  +  + DW +T +  VITL I  +++NDV +E  E
Sbjct: 1  GSHMTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSE 41


>pdb|3AGR|A Chain A, Crystal Structure Of Nucleoside Triphosphate Hydrolases
           From Neospora Caninum
 pdb|3AGR|B Chain B, Crystal Structure Of Nucleoside Triphosphate Hydrolases
           From Neospora Caninum
          Length = 602

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 75  LLENGVLRITVPKLAEEKKSRPKVISISGFFCTIA 109
           LLE+  +RI   KL EE+K + + + +    C+ A
Sbjct: 131 LLEDDAVRILDEKLTEEQKVQVQAMGVPVLLCSTA 165


>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
          Length = 147

 Score = 26.2 bits (56), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 58  WMQFRMPMSADLEHVKALLENGVLRITVPK 87
           +   ++P +   E+  A  ENGVL + +PK
Sbjct: 106 YRTIKLPATVKEENASAKFENGVLSVILPK 135


>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
 pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
          Length = 161

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 58  WMQFRMPMSADLEHVKALLENGVLRITVPK 87
           +   ++P +   E+  A  ENGVL + +PK
Sbjct: 120 YRTIKLPATVKEENASAKFENGVLSVILPK 149


>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
           Angstroms Resolution
 pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
           Angstroms Resolution
          Length = 449

 Score = 26.2 bits (56), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 67  ADLEHVKALLENGVLRITVPKLAEEK 92
            DLE VK +  N V+ +T+PK+   K
Sbjct: 394 GDLEKVKFIWYNNVINLTLPKVGASK 419


>pdb|1SDO|A Chain A, Crystal Structure Of Restriction Endonuclease Bstyi
 pdb|1VRR|A Chain A, Crystal Structure Of The Restriction Endonuclease Bstyi
           Complex With Dna
 pdb|1VRR|B Chain B, Crystal Structure Of The Restriction Endonuclease Bstyi
           Complex With Dna
 pdb|2P0J|A Chain A, Structure Of Restriction Endonuclease Bstyi Bound To
           Non-Cognate Dna
 pdb|2P0J|B Chain B, Structure Of Restriction Endonuclease Bstyi Bound To
           Non-Cognate Dna
          Length = 203

 Score = 25.4 bits (54), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 13  WKETRTAHVITLDIPRMKENDVKIEVEEN 41
           WKE+RT + +T D P++    + +E EE 
Sbjct: 73  WKESRTNYYVTAD-PKLIRETLSLEPEEQ 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,098,576
Number of Sequences: 62578
Number of extensions: 87470
Number of successful extensions: 191
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 18
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)