Query 039913
Match_columns 128
No_of_seqs 199 out of 1118
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:16:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 1.7E-25 3.7E-30 158.3 12.7 96 5-104 29-137 (142)
2 COG0071 IbpA Molecular chapero 99.9 6.2E-25 1.3E-29 155.9 13.0 95 6-102 38-146 (146)
3 PRK10743 heat shock protein Ib 99.9 5.4E-25 1.2E-29 155.0 12.1 91 8-102 34-137 (137)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 2.1E-24 4.5E-29 142.2 10.5 78 10-87 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 9.2E-24 2E-28 140.7 12.2 90 12-102 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 4.1E-23 8.8E-28 136.0 10.2 77 9-87 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 4.3E-22 9.4E-27 130.8 10.9 76 9-87 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 3.4E-22 7.4E-27 130.5 9.8 75 12-87 4-86 (86)
9 cd06479 ACD_HspB7_like Alpha c 99.9 2.8E-22 6.1E-27 129.6 8.7 75 12-87 2-81 (81)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 9.5E-22 2.1E-26 127.6 9.7 75 12-87 1-83 (83)
11 cd06498 ACD_alphaB-crystallin_ 99.9 1.3E-21 2.9E-26 127.2 9.6 75 13-88 2-84 (84)
12 cd06476 ACD_HspB2_like Alpha c 99.9 1.8E-21 3.9E-26 126.4 9.5 74 13-87 2-83 (83)
13 cd06475 ACD_HspB1_like Alpha c 99.9 2.3E-21 4.9E-26 126.7 9.6 75 11-86 3-85 (86)
14 cd06481 ACD_HspB9_like Alpha c 99.8 3E-20 6.4E-25 121.6 9.1 72 15-87 4-87 (87)
15 cd06526 metazoan_ACD Alpha-cry 99.8 3.6E-20 7.8E-25 119.8 8.5 70 17-87 6-83 (83)
16 cd06464 ACD_sHsps-like Alpha-c 99.8 6.9E-20 1.5E-24 117.8 9.7 75 12-87 1-88 (88)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 5.6E-20 1.2E-24 119.3 9.2 72 14-86 3-82 (83)
18 cd06482 ACD_HspB10 Alpha cryst 99.8 6.2E-20 1.3E-24 120.1 9.2 70 16-86 6-86 (87)
19 cd06480 ACD_HspB8_like Alpha-c 99.7 4.1E-17 8.8E-22 107.6 8.5 73 13-86 10-90 (91)
20 KOG0710 Molecular chaperone (s 99.7 1.1E-16 2.3E-21 118.9 6.6 99 4-102 80-195 (196)
21 KOG3591 Alpha crystallins [Pos 99.6 5.3E-15 1.1E-19 107.9 11.3 94 9-104 63-164 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 1.1E-14 2.5E-19 90.3 9.4 74 13-87 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 3E-12 6.6E-17 81.1 9.1 71 13-90 1-71 (78)
24 cd06463 p23_like Proteins cont 99.2 4E-10 8.7E-15 71.1 9.2 76 13-90 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.1 8.7E-10 1.9E-14 80.3 10.8 81 5-91 88-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 99.0 4.8E-09 1E-13 67.0 7.8 77 12-90 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.8 1.5E-07 3.3E-12 58.7 11.3 77 9-87 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.6 1.1E-06 2.4E-11 59.1 10.2 78 9-89 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.4 1.7E-06 3.7E-11 67.9 8.8 65 17-86 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.2 1.2E-05 2.5E-10 51.6 8.3 77 12-90 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 98.2 1.9E-05 4E-10 50.4 9.1 75 11-90 1-77 (85)
32 cd06493 p23_NUDCD1_like p23_NU 98.1 6.9E-05 1.5E-09 48.3 9.4 75 11-90 1-77 (85)
33 cd06488 p23_melusin_like p23_l 98.1 8.7E-05 1.9E-09 48.1 9.7 79 10-90 2-80 (87)
34 cd06468 p23_CacyBP p23_like do 98.0 0.00015 3.3E-09 47.0 10.3 80 9-90 2-85 (92)
35 cd06494 p23_NUDCD2_like p23-li 97.9 0.00042 9E-09 45.7 10.1 78 7-90 4-83 (93)
36 cd00237 p23 p23 binds heat sho 97.8 0.00058 1.3E-08 46.0 10.4 78 9-90 2-79 (106)
37 PLN03088 SGT1, suppressor of 97.2 0.0023 5.1E-08 51.3 8.8 81 8-90 156-236 (356)
38 KOG1309 Suppressor of G2 allel 97.1 0.0028 6.1E-08 46.6 7.0 82 7-90 2-83 (196)
39 cd06492 p23_mNUDC_like p23-lik 97.1 0.011 2.3E-07 38.3 9.1 74 12-90 2-79 (87)
40 cd06490 p23_NCB5OR p23_like do 97.0 0.021 4.5E-07 36.9 9.8 76 11-90 1-80 (87)
41 cd06495 p23_NUDCD3_like p23-li 96.7 0.039 8.5E-07 36.9 9.7 81 7-89 3-86 (102)
42 PF14913 DPCD: DPCD protein fa 93.2 1.3 2.9E-05 32.9 9.1 81 4-89 82-170 (194)
43 KOG3158 HSP90 co-chaperone p23 91.4 0.98 2.1E-05 33.1 6.4 82 5-90 4-85 (180)
44 KOG2265 Nuclear distribution p 91.2 2 4.4E-05 31.5 7.8 79 7-90 17-97 (179)
45 KOG1667 Zn2+-binding protein M 90.9 1.7 3.7E-05 34.0 7.5 88 3-91 209-296 (320)
46 COG5091 SGT1 Suppressor of G2 85.7 0.5 1.1E-05 37.3 1.7 83 7-90 175-257 (368)
47 cd06482 ACD_HspB10 Alpha cryst 79.4 5.3 0.00011 25.8 4.5 35 55-90 8-42 (87)
48 cd06480 ACD_HspB8_like Alpha-c 78.1 5.7 0.00012 25.9 4.4 31 18-48 58-89 (91)
49 cd06478 ACD_HspB4-5-6 Alpha-cr 76.6 6.7 0.00015 24.8 4.3 34 54-88 6-39 (83)
50 PRK05518 rpl6p 50S ribosomal p 75.3 19 0.00042 26.4 7.0 46 30-86 12-57 (180)
51 cd06470 ACD_IbpA-B_like Alpha- 75.2 8.4 0.00018 24.6 4.6 36 55-91 11-46 (90)
52 KOG3591 Alpha crystallins [Pos 75.1 5.4 0.00012 29.1 4.0 45 20-64 117-162 (173)
53 PF13349 DUF4097: Domain of un 75.0 24 0.00053 24.3 8.4 70 10-84 67-147 (166)
54 cd06477 ACD_HspB3_Like Alpha c 74.9 16 0.00036 23.2 5.8 35 54-89 6-40 (83)
55 KOG3260 Calcyclin-binding prot 74.8 9.1 0.0002 28.5 5.1 77 11-89 77-154 (224)
56 PRK05498 rplF 50S ribosomal pr 74.5 16 0.00034 26.6 6.4 44 31-86 12-55 (178)
57 TIGR03653 arch_L6P archaeal ri 74.4 23 0.0005 25.7 7.2 45 31-86 7-51 (170)
58 PRK10743 heat shock protein Ib 74.3 14 0.0003 25.8 5.8 30 60-90 50-79 (137)
59 cd06471 ACD_LpsHSP_like Group 74.1 5.5 0.00012 25.3 3.5 29 18-47 62-90 (93)
60 cd06476 ACD_HspB2_like Alpha c 73.8 7.6 0.00017 24.7 4.0 35 54-89 6-40 (83)
61 cd06464 ACD_sHsps-like Alpha-c 73.6 6.5 0.00014 24.0 3.7 32 16-48 54-86 (88)
62 cd06472 ACD_ScHsp26_like Alpha 73.3 6 0.00013 25.2 3.5 30 17-47 59-89 (92)
63 TIGR03654 L6_bact ribosomal pr 72.6 23 0.0005 25.7 6.8 44 31-86 11-54 (175)
64 KOG3247 Uncharacterized conser 72.2 2.2 4.7E-05 35.4 1.4 78 7-91 2-82 (466)
65 cd06526 metazoan_ACD Alpha-cry 71.2 11 0.00024 23.5 4.3 34 56-90 8-41 (83)
66 cd06497 ACD_alphaA-crystallin_ 71.0 18 0.0004 22.9 5.4 34 54-88 9-42 (86)
67 cd06479 ACD_HspB7_like Alpha c 70.7 12 0.00026 23.7 4.4 34 55-89 8-41 (81)
68 PF12992 DUF3876: Domain of un 70.1 19 0.00041 23.7 5.4 40 7-47 24-68 (95)
69 cd06481 ACD_HspB9_like Alpha c 70.1 25 0.00055 22.3 6.1 35 55-90 7-41 (87)
70 PF00011 HSP20: Hsp20/alpha cr 68.2 18 0.00038 23.1 5.0 34 54-88 6-39 (102)
71 PRK11597 heat shock chaperone 68.1 22 0.00048 25.0 5.7 32 57-89 45-76 (142)
72 PTZ00027 60S ribosomal protein 67.1 29 0.00063 25.7 6.4 48 30-86 12-59 (190)
73 cd06475 ACD_HspB1_like Alpha c 66.4 15 0.00032 23.4 4.2 35 54-89 9-43 (86)
74 cd06498 ACD_alphaB-crystallin_ 66.0 26 0.00056 22.2 5.3 34 54-88 6-39 (84)
75 CHL00140 rpl6 ribosomal protei 64.7 30 0.00066 25.2 6.1 44 31-86 12-55 (178)
76 PF04972 BON: BON domain; Int 61.3 19 0.0004 21.0 3.8 22 27-49 12-33 (64)
77 cd06469 p23_DYX1C1_like p23_li 61.0 20 0.00044 21.6 4.0 30 18-48 36-66 (78)
78 PF08308 PEGA: PEGA domain; I 60.5 31 0.00066 20.6 4.7 39 10-48 26-65 (71)
79 PF01954 DUF104: Protein of un 60.2 9.5 0.00021 23.0 2.3 33 70-104 3-35 (60)
80 PTZ00179 60S ribosomal protein 56.2 53 0.0011 24.3 6.1 47 31-86 12-58 (189)
81 COG0071 IbpA Molecular chapero 56.1 26 0.00057 24.3 4.4 32 17-49 99-131 (146)
82 cd06467 p23_NUDC_like p23_like 55.7 30 0.00064 21.2 4.2 29 58-86 11-39 (85)
83 PF13349 DUF4097: Domain of un 51.0 75 0.0016 21.8 6.1 28 19-47 119-147 (166)
84 cd06494 p23_NUDCD2_like p23-li 50.6 37 0.0008 22.0 4.1 26 60-85 20-45 (93)
85 PRK10568 periplasmic protein; 48.7 1.1E+02 0.0023 22.6 8.0 22 27-49 73-94 (203)
86 PF14869 DUF4488: Domain of un 43.4 56 0.0012 22.9 4.2 73 8-86 26-100 (133)
87 cd01759 PLAT_PL PLAT/LH2 domai 39.7 1.2E+02 0.0026 20.5 7.9 80 19-104 2-88 (113)
88 PLN02711 Probable galactinol-- 39.1 76 0.0016 28.6 5.3 54 43-101 720-775 (777)
89 COG0097 RplF Ribosomal protein 38.8 1.6E+02 0.0034 21.7 6.3 47 29-86 10-56 (178)
90 PF00347 Ribosomal_L6: Ribosom 36.2 98 0.0021 18.6 5.3 44 31-86 2-47 (77)
91 KOG3413 Mitochondrial matrix p 35.5 18 0.0004 25.9 0.8 22 65-86 67-88 (156)
92 PF06964 Alpha-L-AF_C: Alpha-L 35.4 98 0.0021 21.9 4.7 29 60-88 148-176 (177)
93 PF12624 Chorein_N: N-terminal 35.2 76 0.0016 21.1 3.9 73 27-110 18-90 (118)
94 PF01491 Frataxin_Cyay: Fratax 33.8 56 0.0012 21.8 3.0 17 71-87 31-47 (109)
95 PRK13726 conjugal transfer pil 33.3 90 0.002 23.0 4.3 51 31-86 130-180 (188)
96 PRK00446 cyaY frataxin-like pr 32.3 45 0.00098 22.3 2.3 16 72-87 29-44 (105)
97 cd00503 Frataxin Frataxin is a 32.1 48 0.001 22.1 2.4 17 70-86 28-44 (105)
98 TIGR03421 FeS_CyaY iron donor 31.2 45 0.00098 22.1 2.2 17 71-87 26-42 (102)
99 PF12673 DUF3794: Domain of un 31.0 1.1E+02 0.0024 18.5 3.9 14 35-49 17-30 (87)
100 PF12866 DUF3823: Protein of u 30.3 1.3E+02 0.0028 22.8 4.8 56 19-89 78-137 (222)
101 COG4004 Uncharacterized protei 29.8 1.4E+02 0.0031 19.7 4.2 33 11-48 26-58 (96)
102 PF05309 TraE: TraE protein; 29.3 1.1E+02 0.0023 22.2 4.1 49 31-84 130-178 (187)
103 PF14814 UB2H: Bifunctional tr 29.1 1.5E+02 0.0033 18.6 5.0 29 56-84 42-72 (85)
104 PF07873 YabP: YabP family; I 25.6 52 0.0011 19.8 1.6 21 28-49 22-42 (66)
105 cd07698 IgC_MHC_I_alpha3 Class 25.6 1.8E+02 0.0038 18.1 7.0 61 17-78 14-81 (93)
106 PRK11198 LysM domain/BON super 24.4 1.1E+02 0.0025 21.3 3.4 22 27-49 38-59 (147)
107 PF14730 DUF4468: Domain of un 23.9 2E+02 0.0043 18.2 4.8 18 71-88 69-86 (91)
108 TIGR03422 mito_frataxin fratax 23.5 54 0.0012 21.6 1.5 15 73-87 30-44 (97)
109 PF08487 VIT: Vault protein in 23.0 2.3E+02 0.0051 18.7 5.7 30 58-87 38-67 (118)
110 PF14545 DBB: Dof, BCAP, and B 22.5 2.4E+02 0.0052 20.0 4.7 26 17-42 48-76 (142)
111 KOG4379 Uncharacterized conser 21.8 2.8E+02 0.006 23.8 5.5 41 6-47 287-328 (596)
112 PF11589 DUF3244: Domain of un 21.6 2.3E+02 0.005 18.4 4.3 36 43-88 10-46 (106)
113 PRK05090 hypothetical protein; 21.4 2.3E+02 0.005 18.5 4.2 35 13-49 4-39 (95)
114 TIGR02761 TraE_TIGR type IV co 21.3 2.5E+02 0.0054 20.3 4.8 50 30-84 129-178 (181)
115 TIGR02856 spore_yqfC sporulati 21.2 78 0.0017 20.2 1.8 21 28-49 40-60 (85)
116 COG0718 Uncharacterized protei 20.4 1.7E+02 0.0037 19.7 3.4 35 71-110 32-66 (105)
117 PF04841 Vps16_N: Vps16, N-ter 20.3 4.7E+02 0.01 21.4 6.6 74 7-84 58-144 (410)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.93 E-value=1.7e-25 Score=158.26 Aligned_cols=96 Identities=22% Similarity=0.335 Sum_probs=86.1
Q ss_pred CCCCceeeEEE-cCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe------------eeceeeeEEEEEECCCCcccCC
Q 039913 5 TLALARADWKE-TRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR------------GRRTSGTFWMQFRMPMSADLEH 71 (128)
Q Consensus 5 ~~~~p~~di~e-~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~------------~e~~~~~f~r~~~LP~~vd~~~ 71 (128)
..+.|++||++ ++++|.|.++||||+++||+|.+.+ +.|+|+|+ +|+.+|.|.|+|.||..||.+
T Consensus 29 ~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~- 106 (142)
T PRK11597 29 SQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS- 106 (142)
T ss_pred cCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence 45679999998 5789999999999999999999999 89999998 678899999999999999998
Q ss_pred eEEEEeCCEEEEEEeccccccCCCCeEEEecce
Q 039913 72 VKALLENGVLRITVPKLAEEKKSRPKVISISGF 104 (128)
Q Consensus 72 i~A~~~~G~L~I~~pK~~~~~~~~~~~I~I~~~ 104 (128)
+|+|+||+|+|+|||...+ ..++|+|+|+..
T Consensus 107 -~A~~~nGVL~I~lPK~~~~-~~~~rkI~I~~~ 137 (142)
T PRK11597 107 -GATFVNGLLHIDLIRNEPE-AIAPQRIAISER 137 (142)
T ss_pred -cCEEcCCEEEEEEeccCcc-ccCCcEEEECCc
Confidence 6999999999999997543 357899999854
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.2e-25 Score=155.89 Aligned_cols=95 Identities=35% Similarity=0.553 Sum_probs=87.4
Q ss_pred CCCceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe--------------eeceeeeEEEEEECCCCcccCC
Q 039913 6 LALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR--------------GRRTSGTFWMQFRMPMSADLEH 71 (128)
Q Consensus 6 ~~~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~--------------~e~~~~~f~r~~~LP~~vd~~~ 71 (128)
.+.|++||+++++.|.|.++||||+++||+|.+.+ +.|+|+|+ +++.++.|+|+|.||..|+.+.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 37899999999999999999999999999999999 79999999 4557899999999999999999
Q ss_pred eEEEEeCCEEEEEEeccccccCCCCeEEEec
Q 039913 72 VKALLENGVLRITVPKLAEEKKSRPKVISIS 102 (128)
Q Consensus 72 i~A~~~~G~L~I~~pK~~~~~~~~~~~I~I~ 102 (128)
++|+|+||+|+|+|||...++ ...++|.|+
T Consensus 117 ~~A~~~nGvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred eeeEeeCcEEEEEEecccccc-ccCceeecC
Confidence 999999999999999998763 568888774
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.93 E-value=5.4e-25 Score=155.01 Aligned_cols=91 Identities=20% Similarity=0.335 Sum_probs=82.1
Q ss_pred CceeeEEE-cCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe------------eeceeeeEEEEEECCCCcccCCeEE
Q 039913 8 LARADWKE-TRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR------------GRRTSGTFWMQFRMPMSADLEHVKA 74 (128)
Q Consensus 8 ~p~~di~e-~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~------------~e~~~~~f~r~~~LP~~vd~~~i~A 74 (128)
.|++||++ ++++|.|.++||||+++||+|.+.+ +.|+|+|+ +|+.+|.|.|+|.||..||.++ |
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A 110 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--A 110 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--C
Confidence 49999994 8999999999999999999999999 79999998 5778899999999999999984 9
Q ss_pred EEeCCEEEEEEeccccccCCCCeEEEec
Q 039913 75 LLENGVLRITVPKLAEEKKSRPKVISIS 102 (128)
Q Consensus 75 ~~~~G~L~I~~pK~~~~~~~~~~~I~I~ 102 (128)
+|+||+|+|+|||...+ ..++|+|+|+
T Consensus 111 ~~~dGVL~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 111 NLVNGLLYIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred EEeCCEEEEEEeCCCcc-ccCCeEEeeC
Confidence 99999999999997443 3578999985
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.92 E-value=2.1e-24 Score=142.17 Aligned_cols=78 Identities=59% Similarity=0.958 Sum_probs=73.1
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe--------------eeceeeeEEEEEECCCCcccCCeEEE
Q 039913 10 RADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR--------------GRRTSGTFWMQFRMPMSADLEHVKAL 75 (128)
Q Consensus 10 ~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~--------------~e~~~~~f~r~~~LP~~vd~~~i~A~ 75 (128)
++||+|+++.|+|.++||||++++|+|++.+++.|+|+|+ +|+.+|.|.|+|.||..++.+.|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 4899999999999999999999999999987358999997 46778999999999999999999999
Q ss_pred EeCCEEEEEEec
Q 039913 76 LENGVLRITVPK 87 (128)
Q Consensus 76 ~~~G~L~I~~pK 87 (128)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999997
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.91 E-value=9.2e-24 Score=140.72 Aligned_cols=90 Identities=41% Similarity=0.684 Sum_probs=76.5
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe------------eeceeeeEEEEEECCCCcccCCeEEEEeCC
Q 039913 12 DWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR------------GRRTSGTFWMQFRMPMSADLEHVKALLENG 79 (128)
Q Consensus 12 di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~------------~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G 79 (128)
||.+++++|.|.++||||.+++|+|++.+ +.|+|+|. .++.++.|.|+|.||..+|.+.|+|.|+||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-CccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 79999999999999999999999999999 79999999 345668999999999999999999999999
Q ss_pred EEEEEEeccccccCCCCeEEEec
Q 039913 80 VLRITVPKLAEEKKSRPKVISIS 102 (128)
Q Consensus 80 ~L~I~~pK~~~~~~~~~~~I~I~ 102 (128)
+|+|++||....+...+++|+|+
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEEEccccccCCCCeEEEeC
Confidence 99999999998855689999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.90 E-value=4.1e-23 Score=136.00 Aligned_cols=77 Identities=38% Similarity=0.652 Sum_probs=72.0
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe----------------eeceeeeEEEEEECCCCcccCCe
Q 039913 9 ARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR----------------GRRTSGTFWMQFRMPMSADLEHV 72 (128)
Q Consensus 9 p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~----------------~e~~~~~f~r~~~LP~~vd~~~i 72 (128)
|++||+++++.|+|.++||||++++|+|.+.+ +.|+|+|+ +|+.+|.|.|+|.|| .++.+.+
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 47999999999999999999999999999999 79999998 245788999999999 7999999
Q ss_pred EEEEeCCEEEEEEec
Q 039913 73 KALLENGVLRITVPK 87 (128)
Q Consensus 73 ~A~~~~G~L~I~~pK 87 (128)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999997
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.88 E-value=4.3e-22 Score=130.83 Aligned_cols=76 Identities=29% Similarity=0.420 Sum_probs=70.2
Q ss_pred ceeeEEEcC-CEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe-------------eeceeeeEEEEEECCCCcccCCeEE
Q 039913 9 ARADWKETR-TAHVITLDIPRMKENDVKIEVEENRVLRVSGR-------------GRRTSGTFWMQFRMPMSADLEHVKA 74 (128)
Q Consensus 9 p~~di~e~~-~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~-------------~e~~~~~f~r~~~LP~~vd~~~i~A 74 (128)
|++||++++ +.|.|.++|||+++++|+|.+.+ +.|+|+|+ +|+.+|.|.|+|.||.+++.. +|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 789999975 99999999999999999999999 79999998 466789999999999999874 89
Q ss_pred EEeCCEEEEEEec
Q 039913 75 LLENGVLRITVPK 87 (128)
Q Consensus 75 ~~~~G~L~I~~pK 87 (128)
+|+||+|+|+||+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.88 E-value=3.4e-22 Score=130.54 Aligned_cols=75 Identities=23% Similarity=0.470 Sum_probs=68.9
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeee-------ceeeeEEEEEECCCCcccCCeEEEE-eCCEEEE
Q 039913 12 DWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGR-------RTSGTFWMQFRMPMSADLEHVKALL-ENGVLRI 83 (128)
Q Consensus 12 di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e-------~~~~~f~r~~~LP~~vd~~~i~A~~-~~G~L~I 83 (128)
+|++++++|.|.++||||++++|+|.+.+ +.|+|+|+.. .....|.|+|.||.+||.+.|+|+| +||+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I 82 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEE
Confidence 78999999999999999999999999999 7999999821 2335799999999999999999999 8999999
Q ss_pred EEec
Q 039913 84 TVPK 87 (128)
Q Consensus 84 ~~pK 87 (128)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9997
No 9
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.88 E-value=2.8e-22 Score=129.62 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=69.8
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEee----eceeeeEEEEEECCCCcccCCeEEEE-eCCEEEEEEe
Q 039913 12 DWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRG----RRTSGTFWMQFRMPMSADLEHVKALL-ENGVLRITVP 86 (128)
Q Consensus 12 di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~----e~~~~~f~r~~~LP~~vd~~~i~A~~-~~G~L~I~~p 86 (128)
||.++++.|.|.++||||++++|+|++.+ +.|+|+|++ +..+|+|.|+|.||.+||++.|+|+| +||+|+|+++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~ 80 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKAR 80 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEec
Confidence 68899999999999999999999999999 799999983 23679999999999999999999997 9999999998
Q ss_pred c
Q 039913 87 K 87 (128)
Q Consensus 87 K 87 (128)
+
T Consensus 81 ~ 81 (81)
T cd06479 81 R 81 (81)
T ss_pred C
Confidence 5
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.87 E-value=9.5e-22 Score=127.59 Aligned_cols=75 Identities=20% Similarity=0.438 Sum_probs=68.0
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeee-------ceeeeEEEEEECCCCcccCCeEEEE-eCCEEEE
Q 039913 12 DWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGR-------RTSGTFWMQFRMPMSADLEHVKALL-ENGVLRI 83 (128)
Q Consensus 12 di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e-------~~~~~f~r~~~LP~~vd~~~i~A~~-~~G~L~I 83 (128)
+|.+++++|.|.++||||++++|+|.+.+ +.|+|+|+++ .....|.|+|.||.+||.+.|+|+| +||+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I 79 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTI 79 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEE
Confidence 47889999999999999999999999999 7999999832 2245799999999999999999999 6999999
Q ss_pred EEec
Q 039913 84 TVPK 87 (128)
Q Consensus 84 ~~pK 87 (128)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9997
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.87 E-value=1.3e-21 Score=127.22 Aligned_cols=75 Identities=20% Similarity=0.412 Sum_probs=68.1
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEee-------eceeeeEEEEEECCCCcccCCeEEEEe-CCEEEEE
Q 039913 13 WKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRG-------RRTSGTFWMQFRMPMSADLEHVKALLE-NGVLRIT 84 (128)
Q Consensus 13 i~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~-------e~~~~~f~r~~~LP~~vd~~~i~A~~~-~G~L~I~ 84 (128)
+..++++|.|.++||||++++|+|.+.+ +.|+|+|++ ....+.|.|+|.||.+||.+.|+|+|+ ||+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEE
Confidence 5678999999999999999999999999 799999982 124567999999999999999999995 9999999
Q ss_pred Eecc
Q 039913 85 VPKL 88 (128)
Q Consensus 85 ~pK~ 88 (128)
+||+
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9985
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.86 E-value=1.8e-21 Score=126.41 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=68.1
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe-------eeceeeeEEEEEECCCCcccCCeEEEEe-CCEEEEE
Q 039913 13 WKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR-------GRRTSGTFWMQFRMPMSADLEHVKALLE-NGVLRIT 84 (128)
Q Consensus 13 i~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~-------~e~~~~~f~r~~~LP~~vd~~~i~A~~~-~G~L~I~ 84 (128)
+..++++|.|.++||||++++|+|.+.+ +.|+|+|+ .++..+.|.|+|.||.+||.+.|+|+|. ||+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEE
Confidence 4567899999999999999999999999 79999998 2456788999999999999999999996 9999999
Q ss_pred Eec
Q 039913 85 VPK 87 (128)
Q Consensus 85 ~pK 87 (128)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.86 E-value=2.3e-21 Score=126.65 Aligned_cols=75 Identities=19% Similarity=0.446 Sum_probs=69.4
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeee-------ceeeeEEEEEECCCCcccCCeEEEEe-CCEEE
Q 039913 11 ADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGR-------RTSGTFWMQFRMPMSADLEHVKALLE-NGVLR 82 (128)
Q Consensus 11 ~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e-------~~~~~f~r~~~LP~~vd~~~i~A~~~-~G~L~ 82 (128)
.||++++++|.|.++||||++++|+|.+.+ +.|+|+|+++ ...+.|.|+|.||..||.++++|+|. ||+|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 589999999999999999999999999999 7999999932 24478999999999999999999997 99999
Q ss_pred EEEe
Q 039913 83 ITVP 86 (128)
Q Consensus 83 I~~p 86 (128)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.83 E-value=3e-20 Score=121.60 Aligned_cols=72 Identities=25% Similarity=0.435 Sum_probs=65.8
Q ss_pred EcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEee-----------eceeeeEEEEEECCCCcccCCeEEEE-eCCEEE
Q 039913 15 ETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRG-----------RRTSGTFWMQFRMPMSADLEHVKALL-ENGVLR 82 (128)
Q Consensus 15 e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~-----------e~~~~~f~r~~~LP~~vd~~~i~A~~-~~G~L~ 82 (128)
+..+.|.|.++||||+++||+|.+.+ +.|+|+|++ .+.++.|.|+|.||..||.+.|+|.| +||+|+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEE
Confidence 45679999999999999999999999 899999982 23468999999999999999999999 999999
Q ss_pred EEEec
Q 039913 83 ITVPK 87 (128)
Q Consensus 83 I~~pK 87 (128)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99995
No 15
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.83 E-value=3.6e-20 Score=119.83 Aligned_cols=70 Identities=30% Similarity=0.511 Sum_probs=64.7
Q ss_pred CCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEee-------eceeeeEEEEEECCCCcccCCeEEEEeC-CEEEEEEec
Q 039913 17 RTAHVITLDIPRMKENDVKIEVEENRVLRVSGRG-------RRTSGTFWMQFRMPMSADLEHVKALLEN-GVLRITVPK 87 (128)
Q Consensus 17 ~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~-------e~~~~~f~r~~~LP~~vd~~~i~A~~~~-G~L~I~~pK 87 (128)
++.|.|.++||||++++|+|.+.+ +.|.|+|++ .+.++.|.|+|.||.+||.+.++|+|.| |+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 469999999999999999999999 899999992 2356899999999999999999999998 999999997
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.83 E-value=6.9e-20 Score=117.84 Aligned_cols=75 Identities=48% Similarity=0.753 Sum_probs=69.9
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEee-------------eceeeeEEEEEECCCCcccCCeEEEEeC
Q 039913 12 DWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRG-------------RRTSGTFWMQFRMPMSADLEHVKALLEN 78 (128)
Q Consensus 12 di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~-------------e~~~~~f~r~~~LP~~vd~~~i~A~~~~ 78 (128)
++.++++.|+|.++||||++++|+|++.+ +.|.|+|+. ++.++.|.|+|.||..++.+.++|.|.|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC
Confidence 47889999999999999999999999999 899999982 2357999999999999999999999999
Q ss_pred CEEEEEEec
Q 039913 79 GVLRITVPK 87 (128)
Q Consensus 79 G~L~I~~pK 87 (128)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.83 E-value=5.6e-20 Score=119.35 Aligned_cols=72 Identities=25% Similarity=0.431 Sum_probs=65.2
Q ss_pred EEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEee-------eceeeeEEEEEECCCCcccCCeEEEE-eCCEEEEEE
Q 039913 14 KETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRG-------RRTSGTFWMQFRMPMSADLEHVKALL-ENGVLRITV 85 (128)
Q Consensus 14 ~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~-------e~~~~~f~r~~~LP~~vd~~~i~A~~-~~G~L~I~~ 85 (128)
.+++++|.|.++||||++++|+|.+.+ +.|+|+|++ ....+.|.|+|.||.+|+.+.|+|+| +||+|+|..
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET 81 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence 367889999999999999999999999 899999982 23456999999999999999999998 899999987
Q ss_pred e
Q 039913 86 P 86 (128)
Q Consensus 86 p 86 (128)
+
T Consensus 82 ~ 82 (83)
T cd06477 82 K 82 (83)
T ss_pred c
Confidence 6
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.82 E-value=6.2e-20 Score=120.13 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=65.1
Q ss_pred cCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe----------eeceeeeEEEEEECCCCcccCCeEEEEeCC-EEEEE
Q 039913 16 TRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR----------GRRTSGTFWMQFRMPMSADLEHVKALLENG-VLRIT 84 (128)
Q Consensus 16 ~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~----------~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G-~L~I~ 84 (128)
+++.|+|.++||||++++|+|.+.+ +.|+|+|+ .++.+|.|.|+|.||.+||.++|+|+|+|| +|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 5689999999999999999999999 89999998 357889999999999999999999999876 99998
Q ss_pred Ee
Q 039913 85 VP 86 (128)
Q Consensus 85 ~p 86 (128)
-|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 77
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.72 E-value=4.1e-17 Score=107.57 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=66.6
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEee-------eceeeeEEEEEECCCCcccCCeEEEEe-CCEEEEE
Q 039913 13 WKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRG-------RRTSGTFWMQFRMPMSADLEHVKALLE-NGVLRIT 84 (128)
Q Consensus 13 i~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~-------e~~~~~f~r~~~LP~~vd~~~i~A~~~-~G~L~I~ 84 (128)
+.++++.|.|.+++.||+++||+|++.+ +.|+|+|+. ....+.|.|+|.||.+||.+.|+|+|. ||+|+|.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 4567889999999999999999999999 799999992 234689999999999999999999998 9999999
Q ss_pred Ee
Q 039913 85 VP 86 (128)
Q Consensus 85 ~p 86 (128)
+|
T Consensus 89 aP 90 (91)
T cd06480 89 AP 90 (91)
T ss_pred cC
Confidence 98
No 20
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-16 Score=118.88 Aligned_cols=99 Identities=40% Similarity=0.647 Sum_probs=87.1
Q ss_pred CCCCCceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe----------------eeceeeeEEEEEECCCCc
Q 039913 4 QTLALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR----------------GRRTSGTFWMQFRMPMSA 67 (128)
Q Consensus 4 ~~~~~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~----------------~e~~~~~f~r~~~LP~~v 67 (128)
.+.+.+++++.+..+.|.+.++|||+++++++|.+.+++.|.|+|+ .++..|.|.|.|.||.++
T Consensus 80 ~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv 159 (196)
T KOG0710|consen 80 KSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENV 159 (196)
T ss_pred cccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccc
Confidence 4567788899999999999999999999999999998558999999 367889999999999999
Q ss_pred ccCCeEEEEeCCEEEEEEeccccc-cCCCCeEEEec
Q 039913 68 DLEHVKALLENGVLRITVPKLAEE-KKSRPKVISIS 102 (128)
Q Consensus 68 d~~~i~A~~~~G~L~I~~pK~~~~-~~~~~~~I~I~ 102 (128)
+.+.|+|.|+||+|+|++||.... +....+.|.|.
T Consensus 160 ~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 160 DVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred cHHHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 999999999999999999999874 23456666664
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.3e-15 Score=107.85 Aligned_cols=94 Identities=22% Similarity=0.435 Sum_probs=83.0
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEee-------eceeeeEEEEEECCCCcccCCeEEEEe-CCE
Q 039913 9 ARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRG-------RRTSGTFWMQFRMPMSADLEHVKALLE-NGV 80 (128)
Q Consensus 9 p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~-------e~~~~~f~r~~~LP~~vd~~~i~A~~~-~G~ 80 (128)
...++..+.+.|.|.+++..|++++|.|++.+ +.|.|.|+. ....++|.|+|.||.+||++.|++.|. +|+
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGv 141 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGV 141 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCce
Confidence 45678889999999999999999999999999 799999992 234579999999999999999999995 899
Q ss_pred EEEEEeccccccCCCCeEEEecce
Q 039913 81 LRITVPKLAEEKKSRPKVISISGF 104 (128)
Q Consensus 81 L~I~~pK~~~~~~~~~~~I~I~~~ 104 (128)
|+|.+||....+. ..|.|+|+..
T Consensus 142 LtI~ap~~~~~~~-~er~ipI~~~ 164 (173)
T KOG3591|consen 142 LTIEAPKPPPKQD-NERSIPIEQV 164 (173)
T ss_pred EEEEccCCCCcCc-cceEEeEeec
Confidence 9999999987643 6899999854
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.60 E-value=1.1e-14 Score=90.28 Aligned_cols=74 Identities=47% Similarity=0.798 Sum_probs=68.5
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeee------ceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 13 WKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGR------RTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 13 i~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e------~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
|+++++.|.|++++||+.++++.|.+.+ +.|.|++... ...+.|.+.+.||..++++.++|.|.+|.|+|.+|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 5688899999999999999999999999 8999999843 35789999999999999999999999999999999
Q ss_pred c
Q 039913 87 K 87 (128)
Q Consensus 87 K 87 (128)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.40 E-value=3e-12 Score=81.06 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=65.5
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEecccc
Q 039913 13 WKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPKLAE 90 (128)
Q Consensus 13 i~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~~ 90 (128)
|+++++.+.|.+.+||+++++++|.+.+ +.|.|++ ..|.+.+.||..|+++..++++.+|.|.|+|+|...
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP 71 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC
Confidence 5688999999999999999999999999 7899985 469999999999999999999999999999999764
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.17 E-value=4e-10 Score=71.10 Aligned_cols=76 Identities=25% Similarity=0.340 Sum_probs=67.6
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEecccc
Q 039913 13 WKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPKLAE 90 (128)
Q Consensus 13 i~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~~ 90 (128)
|.++++.+.|.+.+||..++++.|.+.+ +.|.|++... ..+.|...+.|+..|+++..++++.+|.|.|+|+|...
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGG-GGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCC-CCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 4678899999999999999999999999 7999997621 23678899999999999999999999999999999875
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.13 E-value=8.7e-10 Score=80.30 Aligned_cols=81 Identities=20% Similarity=0.407 Sum_probs=65.6
Q ss_pred CCCCceeeEEEcCC-EEEEEEEcCCCCCCC-eEEEEEc-CcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEE
Q 039913 5 TLALARADWKETRT-AHVITLDIPRMKEND-VKIEVEE-NRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVL 81 (128)
Q Consensus 5 ~~~~p~~di~e~~~-~~~l~~~lPG~~~ed-i~V~v~~-~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L 81 (128)
....+++++.+.++ .++|.++|||+++++ |+|.+.. ...|+|.. .+.|.+++.||.. +.+.++++|+||+|
T Consensus 88 ~~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~-----~~~~~krv~L~~~-~~e~~~~t~nNgIL 161 (177)
T PF05455_consen 88 DEESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV-----GEKYLKRVALPWP-DPEITSATFNNGIL 161 (177)
T ss_pred CcceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec-----CCceEeeEecCCC-ccceeeEEEeCceE
Confidence 34467889998777 699999999999888 9999984 25666663 3447899999976 78889999999999
Q ss_pred EEEEeccccc
Q 039913 82 RITVPKLAEE 91 (128)
Q Consensus 82 ~I~~pK~~~~ 91 (128)
.|+|-+....
T Consensus 162 EIri~~~~~~ 171 (177)
T PF05455_consen 162 EIRIRRTEES 171 (177)
T ss_pred EEEEeecCCC
Confidence 9999877654
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.96 E-value=4.8e-09 Score=66.96 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=68.1
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEecccc
Q 039913 12 DWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPKLAE 90 (128)
Q Consensus 12 di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~~ 90 (128)
||+++++.+.|.+.+||+.++++.|.+.+ +.|.|+.... ....|...+.|+..|+++..++++.+|.|.|+|.|...
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP-GGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEP 77 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC-CCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCC
Confidence 68899999999999999999999999999 7899986521 13468889999999999999999999999999999864
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.84 E-value=1.5e-07 Score=58.72 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=65.7
Q ss_pred ceeeEEEcCCEEEEEEEcCCC--CCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 9 ARADWKETRTAHVITLDIPRM--KENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 9 p~~di~e~~~~~~l~~~lPG~--~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
|+++|.++++...|.+.+++. +++++.|.+.+ +.|.|+...... ..|...+.|...|+++..+.++.++.|.|+|.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~-~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~ 78 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG-KEYLLEGELFGEIDPDESTWKVKDNKIEITLK 78 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS-CEEEEEEEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC-ceEEEEEEEeeeEcchhcEEEEECCEEEEEEE
Confidence 689999999999999999655 59999999999 799999653322 67888899999999999999999999999998
Q ss_pred c
Q 039913 87 K 87 (128)
Q Consensus 87 K 87 (128)
|
T Consensus 79 K 79 (79)
T PF04969_consen 79 K 79 (79)
T ss_dssp B
T ss_pred C
Confidence 6
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.59 E-value=1.1e-06 Score=59.09 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=68.5
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEecc
Q 039913 9 ARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPKL 88 (128)
Q Consensus 9 p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~ 88 (128)
|+++|+++.+...|.+.+|++ +++.|.+.. +.|.|++........|...+.|...|+++..+.++.++.|.|+|.|.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~ 77 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKK 77 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEEC
Confidence 689999999999999999998 889999999 79999976322344578888999999999999999999999999998
Q ss_pred c
Q 039913 89 A 89 (128)
Q Consensus 89 ~ 89 (128)
.
T Consensus 78 ~ 78 (108)
T cd06465 78 E 78 (108)
T ss_pred C
Confidence 7
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.41 E-value=1.7e-06 Score=67.87 Aligned_cols=65 Identities=22% Similarity=0.480 Sum_probs=57.9
Q ss_pred CCEEEEEEEcCCC-CCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEe--CCEEEEEEe
Q 039913 17 RTAHVITLDIPRM-KENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLE--NGVLRITVP 86 (128)
Q Consensus 17 ~~~~~l~~~lPG~-~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~--~G~L~I~~p 86 (128)
.+.++|++.|||+ +..+|+|.|.+ ..|.|... ...|.-.+.||..|+.+..+|.|. .+.|+|+||
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~----~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSP----KPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeC----CCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 5789999999999 88999999999 78999844 226888999999999999999996 589999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.24 E-value=1.2e-05 Score=51.60 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=66.0
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEecccc
Q 039913 12 DWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPKLAE 90 (128)
Q Consensus 12 di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~~ 90 (128)
||+++++...|.+.++|+.++++.|.+.+ +.|.+++... ....|.-.+.|...|+++..+.+...+-+.|.|.|...
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 77 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLP-SGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEA 77 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECC-CCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCC
Confidence 68899999999999999999999999999 7899987521 12357778899999999988888889999999999753
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.24 E-value=1.9e-05 Score=50.40 Aligned_cols=75 Identities=27% Similarity=0.435 Sum_probs=63.0
Q ss_pred eeEEEcCCEEEEEEEcC-CCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeC-CEEEEEEecc
Q 039913 11 ADWKETRTAHVITLDIP-RMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLEN-GVLRITVPKL 88 (128)
Q Consensus 11 ~di~e~~~~~~l~~~lP-G~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~-G~L~I~~pK~ 88 (128)
+.|.++++...|.+.+| ++.++++.|.+.. +.|.|+... +.+.-...|...|+++...-++.+ ..|.|+|+|.
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~----~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~ 75 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG----GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKR 75 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC----CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEEC
Confidence 46899999999999998 7899999999999 789998541 233334478999999998888999 9999999998
Q ss_pred cc
Q 039913 89 AE 90 (128)
Q Consensus 89 ~~ 90 (128)
..
T Consensus 76 ~~ 77 (85)
T cd06467 76 NE 77 (85)
T ss_pred CC
Confidence 64
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=98.08 E-value=6.9e-05 Score=48.25 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=60.8
Q ss_pred eeEEEcCCEEEEEEEcC-CCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCC-EEEEEEecc
Q 039913 11 ADWKETRTAHVITLDIP-RMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENG-VLRITVPKL 88 (128)
Q Consensus 11 ~di~e~~~~~~l~~~lP-G~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G-~L~I~~pK~ 88 (128)
++|+++.+...|.+.+| |+.+++++|.+.. +.|.|... .+...-...|...|+++...-.+.+| .|.|.|.|.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~----~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~ 75 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALK----DQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKK 75 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeC----CCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEEC
Confidence 47899999999999996 9999999999999 78888742 11122344788999999988888766 799999998
Q ss_pred cc
Q 039913 89 AE 90 (128)
Q Consensus 89 ~~ 90 (128)
..
T Consensus 76 ~~ 77 (85)
T cd06493 76 DE 77 (85)
T ss_pred CC
Confidence 64
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=98.06 E-value=8.7e-05 Score=48.05 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=66.9
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEeccc
Q 039913 10 RADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPKLA 89 (128)
Q Consensus 10 ~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~ 89 (128)
++||+++++...|.+.+.|+.++++.+.++. +.|.|+..-.. ...|.-.+.|-..|+++..+.+....-+.|+|.|..
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~-~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~ 79 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG-NKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAE 79 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC-CceEEEEeeccceEChhHcEEEecCcEEEEEEEeCC
Confidence 5799999999999999999999999999998 78887654111 225788889999999999888888999999999986
Q ss_pred c
Q 039913 90 E 90 (128)
Q Consensus 90 ~ 90 (128)
.
T Consensus 80 ~ 80 (87)
T cd06488 80 P 80 (87)
T ss_pred C
Confidence 4
No 34
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=98.03 E-value=0.00015 Score=46.98 Aligned_cols=80 Identities=14% Similarity=0.274 Sum_probs=65.6
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCC---CCeEEEEEcCcEEEEEEeeeceeeeEEEEEE-CCCCcccCCeEEEEeCCEEEEE
Q 039913 9 ARADWKETRTAHVITLDIPRMKE---NDVKIEVEENRVLRVSGRGRRTSGTFWMQFR-MPMSADLEHVKALLENGVLRIT 84 (128)
Q Consensus 9 p~~di~e~~~~~~l~~~lPG~~~---edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~-LP~~vd~~~i~A~~~~G~L~I~ 84 (128)
..++|+++++...|.+.+|+..+ +++.|.+.. +.|.|.+... ....|.-.+. |-..|+++..+..+..+-+.|+
T Consensus 2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~-~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~ 79 (92)
T cd06468 2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDL-NGKNYRFTINRLLKKIDPEKSSFKVKTDRIVIT 79 (92)
T ss_pred ceeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECC-CCcEEEEEehHhhCccCccccEEEEeCCEEEEE
Confidence 35789999999999999999876 999999999 7899986421 1124555554 8899999999999999999999
Q ss_pred Eecccc
Q 039913 85 VPKLAE 90 (128)
Q Consensus 85 ~pK~~~ 90 (128)
|.|...
T Consensus 80 L~K~~~ 85 (92)
T cd06468 80 LAKKKE 85 (92)
T ss_pred EEeCCC
Confidence 999864
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.85 E-value=0.00042 Score=45.71 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=63.3
Q ss_pred CCceeeEEEcCCEEEEEEEcC-CCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCE-EEEE
Q 039913 7 ALARADWKETRTAHVITLDIP-RMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGV-LRIT 84 (128)
Q Consensus 7 ~~p~~di~e~~~~~~l~~~lP-G~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~-L~I~ 84 (128)
..+.+.|.++.+...|++.+| |+++.|+.|.+.. +.|.|... ...+- .=.|...|+++.-.-+++++- |.|.
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~----g~~~l-~G~L~~~I~~destWtled~k~l~I~ 77 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVK----GQEVL-KGKLFDSVVADECTWTLEDRKLIRIV 77 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEEC----CEEEE-cCcccCccCcccCEEEEECCcEEEEE
Confidence 457789999999999999998 8999999999999 78988843 11111 116889999999888898875 8999
Q ss_pred Eecccc
Q 039913 85 VPKLAE 90 (128)
Q Consensus 85 ~pK~~~ 90 (128)
|.|...
T Consensus 78 L~K~~~ 83 (93)
T cd06494 78 LTKSNR 83 (93)
T ss_pred EEeCCC
Confidence 999753
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.80 E-value=0.00058 Score=46.04 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=64.5
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEecc
Q 039913 9 ARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPKL 88 (128)
Q Consensus 9 p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~ 88 (128)
|.++|++..+.+.|++.+|+ ..++.|.+.. +.|.++|... ....|.-.+.|-..|+++..+.+...-.+.|.|.|.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~-~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~ 77 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG-DNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKG 77 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC-CCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeC
Confidence 78999999999999999999 5799999999 7999998632 223466678888999999877777777888999987
Q ss_pred cc
Q 039913 89 AE 90 (128)
Q Consensus 89 ~~ 90 (128)
..
T Consensus 78 ~~ 79 (106)
T cd00237 78 KE 79 (106)
T ss_pred CC
Confidence 63
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.25 E-value=0.0023 Score=51.26 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=68.2
Q ss_pred CceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEec
Q 039913 8 LARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPK 87 (128)
Q Consensus 8 ~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK 87 (128)
.++.||+++++.+.|.+.+.|+.++++.|.+.. +.|.|+.... ....|...+.|-..|+++..+.++...-+.|+|.|
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K 233 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVP-GEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAK 233 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecC-CCcceeecccccccccccccEEEEecceEEEEEec
Confidence 467899999999999999999999999999999 7888875411 12356667889999999998988888899999998
Q ss_pred ccc
Q 039913 88 LAE 90 (128)
Q Consensus 88 ~~~ 90 (128)
...
T Consensus 234 ~~~ 236 (356)
T PLN03088 234 AEP 236 (356)
T ss_pred CCC
Confidence 764
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.09 E-value=0.0028 Score=46.61 Aligned_cols=82 Identities=22% Similarity=0.264 Sum_probs=66.0
Q ss_pred CCceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 7 ALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 7 ~~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
..++.||+++....+|.+-.+++.++|+.|.+.. +.|.+...- +....|.-...|-..|.++..+-..----+.|+|+
T Consensus 2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~-~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~ 79 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQL-PSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLA 79 (196)
T ss_pred CcccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEec-CCchhhhhhHHhcccccccceeeEeeeeeEEEEec
Confidence 4678999999999999999999999999999998 688777441 12234555566888899998777777788999999
Q ss_pred cccc
Q 039913 87 KLAE 90 (128)
Q Consensus 87 K~~~ 90 (128)
|...
T Consensus 80 K~~~ 83 (196)
T KOG1309|consen 80 KAEI 83 (196)
T ss_pred cccc
Confidence 9553
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=97.07 E-value=0.011 Score=38.35 Aligned_cols=74 Identities=18% Similarity=0.356 Sum_probs=57.9
Q ss_pred eEEEcCCEEEEEEEcC-C--CCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCC-EEEEEEec
Q 039913 12 DWKETRTAHVITLDIP-R--MKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENG-VLRITVPK 87 (128)
Q Consensus 12 di~e~~~~~~l~~~lP-G--~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G-~L~I~~pK 87 (128)
.|.++.+...|++.|| + ++..+++|.+.. ..|.|.-. .....-.-.|...|+.+.-.-.+++| .|.|.|-|
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~----g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K 76 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLK----GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEK 76 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEEC----CCceEEeCcccCcccccccEEEEeCCCEEEEEEEE
Confidence 4678888999999997 4 789999999999 78888743 11222233788899999888889886 89999999
Q ss_pred ccc
Q 039913 88 LAE 90 (128)
Q Consensus 88 ~~~ 90 (128)
...
T Consensus 77 ~~~ 79 (87)
T cd06492 77 INK 79 (87)
T ss_pred CCC
Confidence 753
No 40
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.98 E-value=0.021 Score=36.89 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=56.2
Q ss_pred eeEEEcCCEEEEEEEcCCC--CCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEe--CCEEEEEEe
Q 039913 11 ADWKETRTAHVITLDIPRM--KENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLE--NGVLRITVP 86 (128)
Q Consensus 11 ~di~e~~~~~~l~~~lPG~--~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~--~G~L~I~~p 86 (128)
.||+++++...|.+...+. .+.++.+.... +.|.|+-.-. ...|...+.|-..|+.+. +.++. -|-+.|+|.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~--~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~ 76 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG--DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLK 76 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC--CceEEEeeeccccCCCCc-EEEEcccCceEEEEEE
Confidence 4899999999999998854 55555565555 5788874311 334777788888898775 55555 789999999
Q ss_pred cccc
Q 039913 87 KLAE 90 (128)
Q Consensus 87 K~~~ 90 (128)
|..+
T Consensus 77 K~e~ 80 (87)
T cd06490 77 KKEP 80 (87)
T ss_pred cCCC
Confidence 9764
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.70 E-value=0.039 Score=36.92 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=61.1
Q ss_pred CCceeeEEEcCCEEEEEEEcC-CC-CCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCC-EEEE
Q 039913 7 ALARADWKETRTAHVITLDIP-RM-KENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENG-VLRI 83 (128)
Q Consensus 7 ~~p~~di~e~~~~~~l~~~lP-G~-~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G-~L~I 83 (128)
....+.|.++-+...|++.|| |. +..+|.|.+.. ..|.|.-........|- .=.|+..|+.+.-.-.+++| .|.|
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~~~~~~i-~G~L~~~V~~des~Wtled~~~l~I 80 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGGGEKVLM-EGEFTHKINTENSLWSLEPGKCVLL 80 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCCCCceEE-eCcccCcccCccceEEEeCCCEEEE
Confidence 356789999999999999999 64 68999999999 78888742100001121 12688999999988889986 5899
Q ss_pred EEeccc
Q 039913 84 TVPKLA 89 (128)
Q Consensus 84 ~~pK~~ 89 (128)
+|-|..
T Consensus 81 ~L~K~~ 86 (102)
T cd06495 81 SLSKCS 86 (102)
T ss_pred EEEECC
Confidence 999974
No 42
>PF14913 DPCD: DPCD protein family
Probab=93.23 E-value=1.3 Score=32.86 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=63.7
Q ss_pred CCCCCceeeEEEcCCEEEEEE-EcCCCCCCCeEEEEEcC-cEEEEEEeeeceeeeEEEEEECCC----C--cccCCeEEE
Q 039913 4 QTLALARADWKETRTAHVITL-DIPRMKENDVKIEVEEN-RVLRVSGRGRRTSGTFWMQFRMPM----S--ADLEHVKAL 75 (128)
Q Consensus 4 ~~~~~p~~di~e~~~~~~l~~-~lPG~~~edi~V~v~~~-~~L~I~g~~e~~~~~f~r~~~LP~----~--vd~~~i~A~ 75 (128)
+++..|.+-=.++...|.-++ +|| +.++-.+|+++++ +.++|+.. ...|.+.|.+|+ . .+.+.++..
T Consensus 82 ESs~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTt----NKKYyKk~~IPDl~R~~l~l~~~~ls~~ 156 (194)
T PF14913_consen 82 ESSSNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTT----NKKYYKKFSIPDLDRCGLPLEQSALSFA 156 (194)
T ss_pred ecCCCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECc----CccceeEecCCcHHhhCCCcchhhceee
Confidence 566778777788999999998 666 5778888888753 46888854 778899999994 2 366778888
Q ss_pred EeCCEEEEEEeccc
Q 039913 76 LENGVLRITVPKLA 89 (128)
Q Consensus 76 ~~~G~L~I~~pK~~ 89 (128)
+.|..|.|+..|..
T Consensus 157 h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 157 HQNNTLIISYKKPK 170 (194)
T ss_pred eecCeEEEEecCcH
Confidence 89999999998765
No 43
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.98 Score=33.13 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCCCceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEE
Q 039913 5 TLALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRIT 84 (128)
Q Consensus 5 ~~~~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~ 84 (128)
.+..|.+-|.+..+.+.|++.++.-+ +..|.+.. ..|++++.+....-.|...|.|=..||++..+-+-. +.+...
T Consensus 4 ~~~~p~v~Waqr~~~vyltv~Ved~~--d~~v~~e~-~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~-~r~if~ 79 (180)
T KOG3158|consen 4 GMQPPEVKWAQRRDLVYLTVCVEDAK--DVHVNLEP-SKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRT-SRSIFC 79 (180)
T ss_pred cccCCcchhhhhcCeEEEEEEeccCc--cceeeccc-cEEEEEeccCCCceeeEEeeehhhhcCHhhcccccc-ceEEEE
Confidence 35678899999999999999998655 45566667 689999985555566777899999999998876665 655555
Q ss_pred Eecccc
Q 039913 85 VPKLAE 90 (128)
Q Consensus 85 ~pK~~~ 90 (128)
++++..
T Consensus 80 i~~K~e 85 (180)
T KOG3158|consen 80 ILRKKE 85 (180)
T ss_pred EEEccc
Confidence 555443
No 44
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=91.18 E-value=2 Score=31.50 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=59.6
Q ss_pred CCceeeEEEcCCEEEEEEEcC-CC-CCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEE
Q 039913 7 ALARADWKETRTAHVITLDIP-RM-KENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRIT 84 (128)
Q Consensus 7 ~~p~~di~e~~~~~~l~~~lP-G~-~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~ 84 (128)
..+.+.|..+=..+.|.+.+| |+ +..+|.|.+.. ..|.|.-. .....-.=.|...|+.+...-++++|.+.|.
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~k----g~~~ildG~L~~~vk~des~WtiEd~k~i~i 91 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLK----GQPPILDGELSHSVKVDESTWTIEDGKMIVI 91 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecC----CCCceecCccccccccccceEEecCCEEEEE
Confidence 356778888888899999888 88 88999999999 78888744 1112223367888999998899999977777
Q ss_pred Eecccc
Q 039913 85 VPKLAE 90 (128)
Q Consensus 85 ~pK~~~ 90 (128)
+-++..
T Consensus 92 ~l~K~~ 97 (179)
T KOG2265|consen 92 LLKKSN 97 (179)
T ss_pred Eeeccc
Confidence 665544
No 45
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=90.88 E-value=1.7 Score=33.96 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=70.1
Q ss_pred CCCCCCceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEE
Q 039913 3 HQTLALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLR 82 (128)
Q Consensus 3 ~~~~~~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~ 82 (128)
......-+.||..++....|.+..-|.-++.-.|..++ -.|.|.-.-......|...+.|=--|+.+..++.+-.--+.
T Consensus 209 ~~~V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVE 287 (320)
T KOG1667|consen 209 NEIVVKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVE 287 (320)
T ss_pred cCccccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEE
Confidence 34456678899999999999999999999988888888 78888755223344666667776677899999999999999
Q ss_pred EEEeccccc
Q 039913 83 ITVPKLAEE 91 (128)
Q Consensus 83 I~~pK~~~~ 91 (128)
|+|+|.++.
T Consensus 288 Isl~k~ep~ 296 (320)
T KOG1667|consen 288 ISLKKAEPG 296 (320)
T ss_pred EEEeccCCC
Confidence 999998764
No 46
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=85.67 E-value=0.5 Score=37.35 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=64.6
Q ss_pred CCceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 7 ALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 7 ~~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
....+++.++.....|-+.-|-++.++|++-+.+ +.|.|+-+.++..-.|.-...|-..|+++...-..--..+.|.+-
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~ 253 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLR 253 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecC-CcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhh
Confidence 3556778888888889899999999999999999 799999664444444455678888998888776655578888887
Q ss_pred cccc
Q 039913 87 KLAE 90 (128)
Q Consensus 87 K~~~ 90 (128)
|...
T Consensus 254 KV~~ 257 (368)
T COG5091 254 KVEM 257 (368)
T ss_pred hhhh
Confidence 7654
No 47
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=79.35 E-value=5.3 Score=25.79 Aligned_cols=35 Identities=9% Similarity=0.218 Sum_probs=29.3
Q ss_pred eeEEEEEECCCCcccCCeEEEEeCCEEEEEEecccc
Q 039913 55 GTFWMQFRMPMSADLEHVKALLENGVLRITVPKLAE 90 (128)
Q Consensus 55 ~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~~ 90 (128)
..|.-...|| +++.+.|+-++.+|.|+|+.-+...
T Consensus 8 ~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 8 SNVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 3455567899 8899999999999999999987654
No 48
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=78.08 E-value=5.7 Score=25.93 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=26.7
Q ss_pred CEEEEEEEcC-CCCCCCeEEEEEcCcEEEEEE
Q 039913 18 TAHVITLDIP-RMKENDVKIEVEENRVLRVSG 48 (128)
Q Consensus 18 ~~~~l~~~lP-G~~~edi~V~v~~~~~L~I~g 48 (128)
.+|.-.+.|| +++.+.|+-.+..++.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4677789999 899999999999559999985
No 49
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=76.56 E-value=6.7 Score=24.78 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=28.8
Q ss_pred eeeEEEEEECCCCcccCCeEEEEeCCEEEEEEecc
Q 039913 54 SGTFWMQFRMPMSADLEHVKALLENGVLRITVPKL 88 (128)
Q Consensus 54 ~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~ 88 (128)
...|.-.+.|| +++++.|+-.+.++.|+|+.-+.
T Consensus 6 ~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 6 KDRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred CceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 34577778998 88999999999999999998654
No 50
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=75.30 E-value=19 Score=26.38 Aligned_cols=46 Identities=28% Similarity=0.425 Sum_probs=34.8
Q ss_pred CCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 30 KENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 30 ~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
=|++++|++++ +.+.|+|. .|...+.|.-+ .++..++++.|.|...
T Consensus 12 IP~~V~v~i~~-~~v~VkGp----~G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEIEG-LVVTVKGP----KGELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEEEC-CEEEEECC----CeEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 37889999999 79999988 77777665432 3556678888888855
No 51
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=75.20 E-value=8.4 Score=24.58 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=30.1
Q ss_pred eeEEEEEECCCCcccCCeEEEEeCCEEEEEEeccccc
Q 039913 55 GTFWMQFRMPMSADLEHVKALLENGVLRITVPKLAEE 91 (128)
Q Consensus 55 ~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~~~ 91 (128)
..|.-.+.|| ++..+.|+-.++++.|+|+..+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 4566678999 68999999999999999998776654
No 52
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=75.10 E-value=5.4 Score=29.12 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=32.0
Q ss_pred EEEEEEcC-CCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECC
Q 039913 20 HVITLDIP-RMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMP 64 (128)
Q Consensus 20 ~~l~~~lP-G~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP 64 (128)
|.=+..|| ||+++.|.-.+..+|.|+|++..-.....+.|.|++.
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCccceEEeEe
Confidence 33457899 9999999999988799999987221111156666554
No 53
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=75.05 E-value=24 Score=24.29 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=37.0
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe-eec---ee-------eeEEEEEECCCCcccCCeEEEEeC
Q 039913 10 RADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR-GRR---TS-------GTFWMQFRMPMSADLEHVKALLEN 78 (128)
Q Consensus 10 ~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~-~e~---~~-------~~f~r~~~LP~~vd~~~i~A~~~~ 78 (128)
.+.|...++ ..+++.. ..+.+++..++ +.|.|+.. ++. .. ..-.-.+.||.....+.++....+
T Consensus 67 ~V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~~~ 141 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKTSS 141 (166)
T ss_pred eEEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEecc
Confidence 344444333 3344444 21258888888 78999866 111 00 111234566666655666666666
Q ss_pred CEEEEE
Q 039913 79 GVLRIT 84 (128)
Q Consensus 79 G~L~I~ 84 (128)
|-+.|.
T Consensus 142 G~i~i~ 147 (166)
T PF13349_consen 142 GDITIE 147 (166)
T ss_pred ccEEEE
Confidence 666554
No 54
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=74.89 E-value=16 Score=23.22 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=29.8
Q ss_pred eeeEEEEEECCCCcccCCeEEEEeCCEEEEEEeccc
Q 039913 54 SGTFWMQFRMPMSADLEHVKALLENGVLRITVPKLA 89 (128)
Q Consensus 54 ~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~ 89 (128)
...|.-.+.|| +++++.|+-.++++.|+|+--+..
T Consensus 6 ~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 6 KPMFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred CceEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 44677778898 789999999999999999997655
No 55
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=74.84 E-value=9.1 Score=28.52 Aligned_cols=77 Identities=12% Similarity=0.221 Sum_probs=54.6
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEE-ECCCCcccCCeEEEEeCCEEEEEEeccc
Q 039913 11 ADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQF-RMPMSADLEHVKALLENGVLRITVPKLA 89 (128)
Q Consensus 11 ~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~-~LP~~vd~~~i~A~~~~G~L~I~~pK~~ 89 (128)
+-|-++++..-+.+.|-|+..++++|.+.. +.|-+..+ .-...+|.-.+ .|-..|+++.-+-..+-....|.+.|..
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~-dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe 154 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVH-DLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVE 154 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeee-ecCCcceeeehhhhccccChhhcccccccceEEEeehhhh
Confidence 456677888899999999999999999998 67776644 11112333222 4556778888777778777888885554
No 56
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=74.55 E-value=16 Score=26.62 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
|++|+|++.+ +.|+|+|. .|...+.| |.. +...++++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp----~G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGP----KGELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECC----CEEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 6889999999 89999987 77787766 433 445568888777754
No 57
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=74.42 E-value=23 Score=25.69 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
|++++|++.+ +.+.|+|. .|...+.|. |. .+....+++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp----~G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGP----KGEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECC----CeEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 5788999999 79999987 777776663 22 3555678888888854
No 58
>PRK10743 heat shock protein IbpA; Provisional
Probab=74.29 E-value=14 Score=25.82 Aligned_cols=30 Identities=7% Similarity=0.096 Sum_probs=25.6
Q ss_pred EEECCCCcccCCeEEEEeCCEEEEEEecccc
Q 039913 60 QFRMPMSADLEHVKALLENGVLRITVPKLAE 90 (128)
Q Consensus 60 ~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~~ 90 (128)
...|| +++.+.|.-.+++|.|+|+.-+...
T Consensus 50 ~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 50 AIAVA-GFAESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred EEECC-CCCHHHeEEEEECCEEEEEEEECcc
Confidence 36799 8999999999999999999876543
No 59
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=74.05 E-value=5.5 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=25.2
Q ss_pred CEEEEEEEcCCCCCCCeEEEEEcCcEEEEE
Q 039913 18 TAHVITLDIPRMKENDVKIEVEENRVLRVS 47 (128)
Q Consensus 18 ~~~~l~~~lPG~~~edi~V~v~~~~~L~I~ 47 (128)
+.|.-.+.||.+..+.++-.+.+ +.|.|+
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~d-GvL~I~ 90 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYEN-GVLKIT 90 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEEC-CEEEEE
Confidence 45677789999999999999988 899997
No 60
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=73.75 E-value=7.6 Score=24.67 Aligned_cols=35 Identities=3% Similarity=0.090 Sum_probs=29.3
Q ss_pred eeeEEEEEECCCCcccCCeEEEEeCCEEEEEEeccc
Q 039913 54 SGTFWMQFRMPMSADLEHVKALLENGVLRITVPKLA 89 (128)
Q Consensus 54 ~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~ 89 (128)
...|.-.+.|| ++.++.|+-.+.++.|+|..-+..
T Consensus 6 ~d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 6 DDKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred CCeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 35677778898 789999999999999999987643
No 61
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=73.56 E-value=6.5 Score=24.04 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=28.0
Q ss_pred cCCEEEEEEEcC-CCCCCCeEEEEEcCcEEEEEE
Q 039913 16 TRTAHVITLDIP-RMKENDVKIEVEENRVLRVSG 48 (128)
Q Consensus 16 ~~~~~~l~~~lP-G~~~edi~V~v~~~~~L~I~g 48 (128)
....|.-.+.|| +++.+.++..+.+ +.|.|+.
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~ 86 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITL 86 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeC-CEEEEEE
Confidence 357899999999 7899999999999 8999973
No 62
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=73.28 E-value=6 Score=25.25 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=26.7
Q ss_pred CCEEEEEEEcC-CCCCCCeEEEEEcCcEEEEE
Q 039913 17 RTAHVITLDIP-RMKENDVKIEVEENRVLRVS 47 (128)
Q Consensus 17 ~~~~~l~~~lP-G~~~edi~V~v~~~~~L~I~ 47 (128)
...|.-.+.|| +++.+.|+-.+.+ +.|.|+
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~n-GvL~I~ 89 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLEN-GVLTVT 89 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEEC-CEEEEE
Confidence 45888899999 7999999999999 899997
No 63
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=72.56 E-value=23 Score=25.71 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
|++|+|++++ +.|.|+|. .|...+.| |.. +...++++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp----~G~l~~~l--~~~-----i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGP----KGELSRTL--HPG-----VTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcC----CeEEEEEc--CCC-----eEEEEECCEEEEEec
Confidence 6889999998 89999987 77777666 433 455668888888755
No 64
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.17 E-value=2.2 Score=35.45 Aligned_cols=78 Identities=14% Similarity=0.265 Sum_probs=62.3
Q ss_pred CCceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCc-ccCCeEEEE--eCCEEEE
Q 039913 7 ALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSA-DLEHVKALL--ENGVLRI 83 (128)
Q Consensus 7 ~~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~v-d~~~i~A~~--~~G~L~I 83 (128)
-.|.+.+..+++...|.+..|-++...+.+...+ +....+ .+.|.-++.+|..+ +-..-.|+| ++|...|
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~------~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~v 74 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFS------AGPYFLRLAGPGMVEDDARPNASYDAKDGYAHV 74 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhc------cchhHHhhcCcchhhhhccccCccccccceeEE
Confidence 4688899999999999999998888888888777 566665 67788888899877 555555666 5899999
Q ss_pred EEeccccc
Q 039913 84 TVPKLAEE 91 (128)
Q Consensus 84 ~~pK~~~~ 91 (128)
++||..+.
T Consensus 75 K~~K~~~~ 82 (466)
T KOG3247|consen 75 KVPKFHPG 82 (466)
T ss_pred eecCCCcc
Confidence 99996654
No 65
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=71.17 E-value=11 Score=23.55 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=30.1
Q ss_pred eEEEEEECCCCcccCCeEEEEeCCEEEEEEecccc
Q 039913 56 TFWMQFRMPMSADLEHVKALLENGVLRITVPKLAE 90 (128)
Q Consensus 56 ~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~~ 90 (128)
.|.-.+.|| ++.++.|+-.++++.|+|..-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 688889999 5999999999999999999987654
No 66
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=70.95 E-value=18 Score=22.95 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=28.3
Q ss_pred eeeEEEEEECCCCcccCCeEEEEeCCEEEEEEecc
Q 039913 54 SGTFWMQFRMPMSADLEHVKALLENGVLRITVPKL 88 (128)
Q Consensus 54 ~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~ 88 (128)
...|.-.+.|| +++++.|+-.+.++.|+|+--+.
T Consensus 9 ~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 9 RDKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 34566678898 78999999999999999998654
No 67
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=70.65 E-value=12 Score=23.68 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=29.0
Q ss_pred eeEEEEEECCCCcccCCeEEEEeCCEEEEEEeccc
Q 039913 55 GTFWMQFRMPMSADLEHVKALLENGVLRITVPKLA 89 (128)
Q Consensus 55 ~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~ 89 (128)
..|.-.+.|| .++++.|+-.+.++.|+|+--+..
T Consensus 8 ~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 8 DTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 4577778999 889999999999999999987643
No 68
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=70.12 E-value=19 Score=23.73 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=31.7
Q ss_pred CCceeeEEEcCCEEEEEEEcCCC-----CCCCeEEEEEcCcEEEEE
Q 039913 7 ALARADWKETRTAHVITLDIPRM-----KENDVKIEVEENRVLRVS 47 (128)
Q Consensus 7 ~~p~~di~e~~~~~~l~~~lPG~-----~~edi~V~v~~~~~L~I~ 47 (128)
..|.+.|+++++.|.|.+--+.. +++...|.-.+ +.|.|.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~-g~~fI~ 68 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEED-GNLFIE 68 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeC-CEEEEe
Confidence 37999999999999999876643 66666777666 788887
No 69
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=70.10 E-value=25 Score=22.34 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=29.2
Q ss_pred eeEEEEEECCCCcccCCeEEEEeCCEEEEEEecccc
Q 039913 55 GTFWMQFRMPMSADLEHVKALLENGVLRITVPKLAE 90 (128)
Q Consensus 55 ~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~~ 90 (128)
..|.-.+.|| ++.++.|+-.++++.|+|+.-+...
T Consensus 7 d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~ 41 (87)
T cd06481 7 EGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKK 41 (87)
T ss_pred ceEEEEEECC-CCChHHeEEEEECCEEEEEEEEeee
Confidence 4567778888 7899999999999999999976543
No 70
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=68.18 E-value=18 Score=23.13 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=27.7
Q ss_pred eeeEEEEEECCCCcccCCeEEEEeCCEEEEEEecc
Q 039913 54 SGTFWMQFRMPMSADLEHVKALLENGVLRITVPKL 88 (128)
Q Consensus 54 ~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~ 88 (128)
...|.-.+.|| +++.+.++-.+.++.|.|+.-+.
T Consensus 6 ~~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 6 EDEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SSEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 34566679999 88999999999999999999887
No 71
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=68.13 E-value=22 Score=25.03 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=26.8
Q ss_pred EEEEEECCCCcccCCeEEEEeCCEEEEEEeccc
Q 039913 57 FWMQFRMPMSADLEHVKALLENGVLRITVPKLA 89 (128)
Q Consensus 57 f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~ 89 (128)
|.-.+.|| +++.+.|.-.+++|.|+|+--+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 44447799 889999999999999999997654
No 72
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=67.11 E-value=29 Score=25.67 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=34.8
Q ss_pred CCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 30 KENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 30 ~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
=|++++|++.+ +.|.|+|. .|...+.|.=|. ..+....++|.|.|..+
T Consensus 12 IP~~V~V~i~~-~~v~VkGp----~G~L~~~~~~~~----~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 12 IPEGVTVTVKS-RKVTVTGK----YGELTRSFRHLP----VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCCEEEEEC-CEEEEECC----CceEEEEecCCC----ceEEEEeCCCEEEEEeC
Confidence 37899999999 79999987 777776653211 24556678888887755
No 73
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=66.37 E-value=15 Score=23.38 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=29.4
Q ss_pred eeeEEEEEECCCCcccCCeEEEEeCCEEEEEEeccc
Q 039913 54 SGTFWMQFRMPMSADLEHVKALLENGVLRITVPKLA 89 (128)
Q Consensus 54 ~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~ 89 (128)
...|.-.+.|| +++++.|+-.+.++.|+|+--+..
T Consensus 9 ~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 9 ADRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred CCeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 34577778898 889999999999999999997643
No 74
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=66.02 E-value=26 Score=22.17 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=28.2
Q ss_pred eeeEEEEEECCCCcccCCeEEEEeCCEEEEEEecc
Q 039913 54 SGTFWMQFRMPMSADLEHVKALLENGVLRITVPKL 88 (128)
Q Consensus 54 ~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~ 88 (128)
...|.-.+.|| +++++.|+-.+.++.|+|.--+.
T Consensus 6 ~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 6 KDKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred CceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 34566678898 78999999999999999998543
No 75
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=64.68 E-value=30 Score=25.19 Aligned_cols=44 Identities=16% Similarity=0.470 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
|++|+|++++ +.|.|+|. .|...+ .||.. +....+++.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp----~G~l~~--~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGP----KGTLSR--KIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECC----CEEEEE--ECCCC-----eEEEEeCCEEEEEcC
Confidence 5788999999 79999987 666664 45543 455668887777754
No 76
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=61.29 E-value=19 Score=21.00 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=17.9
Q ss_pred CCCCCCCeEEEEEcCcEEEEEEe
Q 039913 27 PRMKENDVKIEVEENRVLRVSGR 49 (128)
Q Consensus 27 PG~~~edi~V~v~~~~~L~I~g~ 49 (128)
++++..+|.|.+.+ +.+.|+|.
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~ 33 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGE 33 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEE
T ss_pred cccCCCeEEEEEEC-CEEEEEee
Confidence 36777789999999 89999998
No 77
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=60.98 E-value=20 Score=21.61 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=25.2
Q ss_pred CEEEEEEEcCC-CCCCCeEEEEEcCcEEEEEE
Q 039913 18 TAHVITLDIPR-MKENDVKIEVEENRVLRVSG 48 (128)
Q Consensus 18 ~~~~l~~~lPG-~~~edi~V~v~~~~~L~I~g 48 (128)
+.|.+.++||+ +.+++.+..+.+ +.|.|+-
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L 66 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGN-GVLVFTL 66 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeC-CEEEEEE
Confidence 56888889995 799999999988 7888873
No 78
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=60.46 E-value=31 Score=20.58 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=26.6
Q ss_pred eeeEE-EcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEE
Q 039913 10 RADWK-ETRTAHVITLDIPRMKENDVKIEVEENRVLRVSG 48 (128)
Q Consensus 10 ~~di~-e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g 48 (128)
++.+. -..+.|.|++..||+..-.-.|.+..+....|..
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~ 65 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNV 65 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEE
Confidence 34554 3466788888888888877777777545555553
No 79
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=60.21 E-value=9.5 Score=22.99 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=16.2
Q ss_pred CCeEEEEeCCEEEEEEeccccccCCCCeEEEecce
Q 039913 70 EHVKALLENGVLRITVPKLAEEKKSRPKVISISGF 104 (128)
Q Consensus 70 ~~i~A~~~~G~L~I~~pK~~~~~~~~~~~I~I~~~ 104 (128)
..|.|.|+||+|.-.=|-.-+. ...-+|.|...
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L~E--g~~V~i~I~~~ 35 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDLPE--GEEVKITIEEE 35 (60)
T ss_dssp --EEEEEETTEEEECS-----T--TEEEEEEE---
T ss_pred ceEEEEEECCEEEECCCCCCCC--CCEEEEEEecc
Confidence 4589999999998654433322 23345555543
No 80
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=56.22 E-value=53 Score=24.26 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
|++++|++++ +.|+|+|. .|...+.|.=+ .+ .+....+++.|.|.-+
T Consensus 12 P~~V~V~i~~-~~ItVkGp----kG~Ls~~~~~~-~~---~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGK----RGTLTKDLRHL-QL---DFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeC-CEEEEECC----CcEEEEEcCCC-Cc---EEEEEecCCEEEEEeC
Confidence 6889999999 79999987 66666544321 11 2445567778888744
No 81
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=56.08 E-value=26 Score=24.30 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=26.5
Q ss_pred CCEEEEEEEcC-CCCCCCeEEEEEcCcEEEEEEe
Q 039913 17 RTAHVITLDIP-RMKENDVKIEVEENRVLRVSGR 49 (128)
Q Consensus 17 ~~~~~l~~~lP-G~~~edi~V~v~~~~~L~I~g~ 49 (128)
...|.-++.|| +++.+.+.-++.+ +.|.|.-.
T Consensus 99 ~~~f~r~~~Lp~~v~~~~~~A~~~n-GvL~I~lp 131 (146)
T COG0071 99 YGEFERTFRLPEKVDPEVIKAKYKN-GLLTVTLP 131 (146)
T ss_pred eeeEEEEEECcccccccceeeEeeC-cEEEEEEe
Confidence 36788889999 6788889999999 89999833
No 82
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=55.69 E-value=30 Score=21.23 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=25.0
Q ss_pred EEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 58 WMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 58 ~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
.-+|.+|..+..+.++..+.+.-|.|.+.
T Consensus 11 ~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 11 TVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 33478999999999999999999999986
No 83
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=50.97 E-value=75 Score=21.76 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=12.3
Q ss_pred EEEEEEEcC-CCCCCCeEEEEEcCcEEEEE
Q 039913 19 AHVITLDIP-RMKENDVKIEVEENRVLRVS 47 (128)
Q Consensus 19 ~~~l~~~lP-G~~~edi~V~v~~~~~L~I~ 47 (128)
...+.+.|| +++-++|++.... +.+.|.
T Consensus 119 ~~~i~I~lP~~~~l~~i~i~~~~-G~i~i~ 147 (166)
T PF13349_consen 119 KSKITIYLPKDYKLDKIDIKTSS-GDITIE 147 (166)
T ss_pred CcEEEEEECCCCceeEEEEEecc-ccEEEE
Confidence 344445555 2333445444444 344443
No 84
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=50.58 E-value=37 Score=22.04 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=24.1
Q ss_pred EEECCCCcccCCeEEEEeCCEEEEEE
Q 039913 60 QFRMPMSADLEHVKALLENGVLRITV 85 (128)
Q Consensus 60 ~~~LP~~vd~~~i~A~~~~G~L~I~~ 85 (128)
+|+||.++..+.+...+...-|+|.+
T Consensus 20 ~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 20 EVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEECCCCCceeeEEEEEEcCEEEEEE
Confidence 47899999999999999999999998
No 85
>PRK10568 periplasmic protein; Provisional
Probab=48.75 E-value=1.1e+02 Score=22.62 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.7
Q ss_pred CCCCCCCeEEEEEcCcEEEEEEe
Q 039913 27 PRMKENDVKIEVEENRVLRVSGR 49 (128)
Q Consensus 27 PG~~~edi~V~v~~~~~L~I~g~ 49 (128)
++++..+|+|.+.+ +.+.+.|.
T Consensus 73 ~~i~~~~I~V~v~~-G~V~L~G~ 94 (203)
T PRK10568 73 DNIKSTDISVKTHQ-KVVTLSGF 94 (203)
T ss_pred CCCCCCceEEEEEC-CEEEEEEE
Confidence 57778899999999 89999999
No 86
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=43.37 E-value=56 Score=22.94 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=38.6
Q ss_pred CceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCC-eEEEE-eCCEEEEEE
Q 039913 8 LARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEH-VKALL-ENGVLRITV 85 (128)
Q Consensus 8 ~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~-i~A~~-~~G~L~I~~ 85 (128)
.|.+.|..+++.|.--+-+|+-+ --|...+ .+-..+ ......+..+++.||.-...++ ++-.+ ++++|.|++
T Consensus 26 ~~~lKilS~Dgtf~Ni~~~~~~~---aiIt~~G-tY~~~s--D~~Y~E~IeKnv~lp~~~g~~n~l~fe~~~dnll~iky 99 (133)
T PF14869_consen 26 SNVLKILSDDGTFVNITMIPKSG---AIITGYG-TYEQPS--DNIYVESIEKNVHLPFLDGKDNELEFELLHDNLLKIKY 99 (133)
T ss_pred cccEEEEcCCCcEEEEEEeCCCC---cEEEEeE-EEEEcC--CccceeeecceecCcccCCCccEEEEEecCCCEEEEEE
Confidence 45577777777766555555433 3344444 343333 1112234456777776554333 45555 366777766
Q ss_pred e
Q 039913 86 P 86 (128)
Q Consensus 86 p 86 (128)
-
T Consensus 100 ~ 100 (133)
T PF14869_consen 100 F 100 (133)
T ss_pred E
Confidence 4
No 87
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=39.69 E-value=1.2e+02 Score=20.50 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=43.8
Q ss_pred EEEEEEEcCCC--CCCCeEEEEEcC----cEEEEEEeeeceeeeEEEEEECCCCc-ccCCeEEEEeCCEEEEEEeccccc
Q 039913 19 AHVITLDIPRM--KENDVKIEVEEN----RVLRVSGRGRRTSGTFWMQFRMPMSA-DLEHVKALLENGVLRITVPKLAEE 91 (128)
Q Consensus 19 ~~~l~~~lPG~--~~edi~V~v~~~----~~L~I~g~~e~~~~~f~r~~~LP~~v-d~~~i~A~~~~G~L~I~~pK~~~~ 91 (128)
+|.|.+.+.|= -.-.+.|++.+. ..+.|.--.-.....|..-|....++ +...++-.+++.+|-...|+..
T Consensus 2 ~Yqv~V~~s~~~~~~g~~~vsL~G~~g~s~~~~i~~g~l~pg~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~~-- 79 (113)
T cd01759 2 RYKVSVTLSGKKKVTGTILVSLYGNKGNTRQYEIFKGTLKPGNTYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKVG-- 79 (113)
T ss_pred eEEEEEEEecccccCceEEEEEEcCCCCccceEEEeeeecCCCEEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeEE--
Confidence 57777777663 223444444321 11222200011234555666677666 7777888888887765555543
Q ss_pred cCCCCeEEEecce
Q 039913 92 KKSRPKVISISGF 104 (128)
Q Consensus 92 ~~~~~~~I~I~~~ 104 (128)
.++|.|+.+
T Consensus 80 ----~~~I~Vq~G 88 (113)
T cd01759 80 ----AEKITVQSG 88 (113)
T ss_pred ----EEEEEEEeC
Confidence 678888844
No 88
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=39.13 E-value=76 Score=28.61 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=32.3
Q ss_pred EEEEEEeeeceeeeEEEEEECCC--CcccCCeEEEEeCCEEEEEEeccccccCCCCeEEEe
Q 039913 43 VLRVSGRGRRTSGTFWMQFRMPM--SADLEHVKALLENGVLRITVPKLAEEKKSRPKVISI 101 (128)
Q Consensus 43 ~L~I~g~~e~~~~~f~r~~~LP~--~vd~~~i~A~~~~G~L~I~~pK~~~~~~~~~~~I~I 101 (128)
.|.|+.+..-..+-|.. .+|. .||...+...|++|+|++.+|-.... ....|+|
T Consensus 720 ~v~v~vkg~G~lg~YsS--~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~~~---~~~~v~~ 775 (777)
T PLN02711 720 SVQIGVKGSGEMRVFAS--EKPRSCKIDGEEVEFGYEDCMVVVQVPWSGSS---GLSLIEY 775 (777)
T ss_pred eEEEEEEeeeEEEEEec--CCCeEEEECCEEeeeEecCCEEEEEecCCCcC---CceeEEE
Confidence 45554332223334443 4554 44666777788899999999977622 3555554
No 89
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=38.80 E-value=1.6e+02 Score=21.70 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=32.6
Q ss_pred CCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 29 MKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 29 ~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
.-|++++|++++ +.++++|. .|...+.|.-+ + +.-..+|+++.+...
T Consensus 10 ~~P~gV~V~i~~-~~v~vkGp----kGeL~~~~~~~--~----v~v~~~~~~~vv~~~ 56 (178)
T COG0097 10 VIPAGVTVSIEG-QVVTVKGP----KGELTREFHDN--V----VKVEVEDNILVVRPV 56 (178)
T ss_pred ecCCCeEEEEec-cEEEEECC----CcEEEEEecCc--c----eEEEecCCEEEEeec
Confidence 348899999998 89999977 66676665433 2 455566776665543
No 90
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=36.21 E-value=98 Score=18.56 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEE--EeCCEEEEEEe
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKAL--LENGVLRITVP 86 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~--~~~G~L~I~~p 86 (128)
++.++|.+.+ ..+.+.|. .|. .++.||.. +... .+++.+.+...
T Consensus 2 P~gV~v~~~~-~~i~v~G~----~g~--l~~~~~~~-----v~v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGP----KGE--LSRPIPPG-----VKVEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESS----SSE--EEEEETTT-----EEEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECC----CEe--EEEECCCC-----eeEEEEcCCCceEEEEC
Confidence 5678999999 79999876 444 34666755 4444 55776666654
No 91
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=35.51 E-value=18 Score=25.89 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=17.5
Q ss_pred CCcccCCeEEEEeCCEEEEEEe
Q 039913 65 MSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 65 ~~vd~~~i~A~~~~G~L~I~~p 86 (128)
+.+..+.-.+.|.||+|+|.++
T Consensus 67 e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred hhcCccccccccccceEEEEec
Confidence 4454566778899999999998
No 92
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=35.38 E-value=98 Score=21.91 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=20.6
Q ss_pred EEECCCCcccCCeEEEEeCCEEEEEEecc
Q 039913 60 QFRMPMSADLEHVKALLENGVLRITVPKL 88 (128)
Q Consensus 60 ~~~LP~~vd~~~i~A~~~~G~L~I~~pK~ 88 (128)
++.=|..|-+........+|-++++||+.
T Consensus 148 t~~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 148 TFENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp CSSSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 34567778777656666799999999963
No 93
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=35.20 E-value=76 Score=21.13 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=44.3
Q ss_pred CCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEeccccccCCCCeEEEecceec
Q 039913 27 PRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPKLAEEKKSRPKVISISGFFC 106 (128)
Q Consensus 27 PG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~~~~~~~~~~I~I~~~~~ 106 (128)
-+++++++++.+-+ +.+.++-- .-....-..+.||-.+.. + .=|.|.|.+|-..-. .++-.|.|++...
T Consensus 18 ~~l~~~ql~vsl~~-G~v~L~nl--~l~~~~l~~~~lP~~v~~----g--~i~~l~i~IPw~~l~--~~pv~i~I~~v~l 86 (118)
T PF12624_consen 18 ENLDKDQLSVSLWN-GEVELRNL--ELKKDALNNLGLPIEVKS----G--SIGKLRIKIPWTSLW--SKPVVIEIEDVFL 86 (118)
T ss_pred hcCCHHHeeeeecc-CceEEEcc--EeeHHHhcCcCCCeEEeE----E--EeeeEEEEEEhHHhC--CCCEEEEEeeEEE
Confidence 47889999999987 67877733 101111123356622111 1 125699999977643 4688899987766
Q ss_pred Cccc
Q 039913 107 TIAD 110 (128)
Q Consensus 107 ~~~~ 110 (128)
....
T Consensus 87 ~~~~ 90 (118)
T PF12624_consen 87 VLKP 90 (118)
T ss_pred EEEE
Confidence 5433
No 94
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=33.84 E-value=56 Score=21.77 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=14.8
Q ss_pred CeEEEEeCCEEEEEEec
Q 039913 71 HVKALLENGVLRITVPK 87 (128)
Q Consensus 71 ~i~A~~~~G~L~I~~pK 87 (128)
.+.+.+.+|+|+|.++.
T Consensus 31 d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPD 47 (109)
T ss_dssp TEEEEEETTEEEEEETT
T ss_pred ceEEEccCCEEEEEECC
Confidence 58899999999999953
No 95
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=33.32 E-value=90 Score=23.01 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
+..+.+.... +.+.|+|......|.- .+......-.+.-+|++|.|.|.==
T Consensus 130 ~~~i~v~~~~-~~V~V~Gtlkt~vg~~----~~~~~~k~Y~l~~~y~~G~l~L~~f 180 (188)
T PRK13726 130 QTSVRVWPQY-GRVDIRGVLKTWIGDS----KPFTEIKHYILILKRENGVTWLDNF 180 (188)
T ss_pred eeeEEEccCC-CEEEEEEEEEEEECCc----ccCchheEEEEEEEEcCCEEEEEEE
Confidence 3455555555 6777777611111111 1222223345777889999988643
No 96
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=32.28 E-value=45 Score=22.26 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.9
Q ss_pred eEEEEeCCEEEEEEec
Q 039913 72 VKALLENGVLRITVPK 87 (128)
Q Consensus 72 i~A~~~~G~L~I~~pK 87 (128)
+.+.+.+|+|+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 6788899999999984
No 97
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=32.06 E-value=48 Score=22.07 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=14.6
Q ss_pred CCeEEEEeCCEEEEEEe
Q 039913 70 EHVKALLENGVLRITVP 86 (128)
Q Consensus 70 ~~i~A~~~~G~L~I~~p 86 (128)
..+.+.+.+|+|+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 46778888999999998
No 98
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=31.24 E-value=45 Score=22.10 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.2
Q ss_pred CeEEEEeCCEEEEEEec
Q 039913 71 HVKALLENGVLRITVPK 87 (128)
Q Consensus 71 ~i~A~~~~G~L~I~~pK 87 (128)
.+.+.+.+|+|+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 36778889999999983
No 99
>PF12673 DUF3794: Domain of unknown function (DUF3794); InterPro: IPR024300 This presumed domain is functionally uncharacterised. It is found in bacteria, and is approximately 90 amino acids in length.
Probab=31.00 E-value=1.1e+02 Score=18.53 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=9.7
Q ss_pred EEEEEcCcEEEEEEe
Q 039913 35 KIEVEENRVLRVSGR 49 (128)
Q Consensus 35 ~V~v~~~~~L~I~g~ 49 (128)
++++.+ +.|.|.|.
T Consensus 17 ~~~v~~-~kv~v~G~ 30 (87)
T PF12673_consen 17 EIKVID-DKVIVEGE 30 (87)
T ss_pred EEEEEC-CEEEEEEE
Confidence 445566 67888888
No 100
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=30.32 E-value=1.3e+02 Score=22.79 Aligned_cols=56 Identities=7% Similarity=0.066 Sum_probs=30.7
Q ss_pred EEEEEE-EcCC---CCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEeccc
Q 039913 19 AHVITL-DIPR---MKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPKLA 89 (128)
Q Consensus 19 ~~~l~~-~lPG---~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~ 89 (128)
.|.|.+ +=|| ...+.+.|.+.++..+.+. .-.|.|- ...+..+.++.|+.++--..
T Consensus 78 ~Yki~~~~G~fp~~~~~dti~v~i~G~t~~d~e------VtPY~~I---------~~~~~~~~g~~v~asf~v~~ 137 (222)
T PF12866_consen 78 DYKIVPKNGNFPWVVPVDTIEVDIKGNTTQDFE------VTPYLRI---------KNAKISLNGNKVTASFKVEQ 137 (222)
T ss_dssp EEEEEE-CTSCSBSCCE--EEEEESSCEEEEEE------E-BSEEE---------EECEEEEETTEEEEEEEEEE
T ss_pred ceEEEEcCCCCcccCCCccEEEEecCceEEeEE------eeeeEEE---------eccceeecCCEEEEEEEEEe
Confidence 456666 6678 7888888888874445454 3333333 33345556666666654333
No 101
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.84 E-value=1.4e+02 Score=19.66 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=23.0
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEE
Q 039913 11 ADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSG 48 (128)
Q Consensus 11 ~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g 48 (128)
+.+.+.+| .|....||.+. |.++.++ +.|.|.+
T Consensus 26 ~~v~~eGD--~ivas~pgis~--ieik~E~-kkL~v~t 58 (96)
T COG4004 26 WTVSEEGD--RIVASSPGISR--IEIKPEN-KKLLVNT 58 (96)
T ss_pred eeEeeccc--EEEEecCCceE--EEEeccc-ceEEEec
Confidence 56666777 66777888764 6666666 6787775
No 102
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=29.27 E-value=1.1e+02 Score=22.17 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEE
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRIT 84 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~ 84 (128)
++++.+.... +.+.|+|......|.- .+...-..=.+.-+|.+|.|.|.
T Consensus 130 ~~~i~~d~~~-~~V~V~G~l~t~~g~~----~~~~~~~~y~~~~~~~~g~~~L~ 178 (187)
T PF05309_consen 130 PKSIEVDPET-LTVFVTGTLKTWIGDK----KVSSEDKTYRLQFKYRNGRLWLK 178 (187)
T ss_pred EeEEEEecCC-CEEEEEEEEEEEECCc----cccceeEEEEEEEEEeCCEEEEe
Confidence 3555555556 6777776611111110 01111112235567889988876
No 103
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=29.12 E-value=1.5e+02 Score=18.59 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=17.7
Q ss_pred eEEEEEECCCCc-ccCCeEEEEeCCEEE-EE
Q 039913 56 TFWMQFRMPMSA-DLEHVKALLENGVLR-IT 84 (128)
Q Consensus 56 ~f~r~~~LP~~v-d~~~i~A~~~~G~L~-I~ 84 (128)
-|.|.|.+|... ....+.-.|.+|.+. |.
T Consensus 42 i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~ 72 (85)
T PF14814_consen 42 IYTRGFDFPDGQEPARRVRLTFSGGRVSSIQ 72 (85)
T ss_dssp EEE--EEETTCEE--EEEEEEEETTEEEEEE
T ss_pred EEECCCCCCCCCccCEEEEEEECCCEEEEEE
Confidence 368899999887 445577778877443 44
No 104
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=25.56 E-value=52 Score=19.78 Aligned_cols=21 Identities=10% Similarity=0.499 Sum_probs=17.1
Q ss_pred CCCCCCeEEEEEcCcEEEEEEe
Q 039913 28 RMKENDVKIEVEENRVLRVSGR 49 (128)
Q Consensus 28 G~~~edi~V~v~~~~~L~I~g~ 49 (128)
-|+.+.|.+.... +.|.|+|+
T Consensus 22 ~f~~~~I~l~t~~-g~l~I~G~ 42 (66)
T PF07873_consen 22 SFDDEEIRLNTKK-GKLTIKGE 42 (66)
T ss_dssp EEETTEEEEEETT-EEEEEEEE
T ss_pred EECCCEEEEEeCC-EEEEEECc
Confidence 3577888888888 89999987
No 105
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=25.55 E-value=1.8e+02 Score=18.14 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe-----eeceeeeEEE--EEECCCCcccCCeEEEEeC
Q 039913 17 RTAHVITLDIPRMKENDVKIEVEENRVLRVSGR-----GRRTSGTFWM--QFRMPMSADLEHVKALLEN 78 (128)
Q Consensus 17 ~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~-----~e~~~~~f~r--~~~LP~~vd~~~i~A~~~~ 78 (128)
++...|...+-||-+.+|.|....++.....+. .....+.|.. .+.++.. +.....+...+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~-~~~~ytC~V~H 81 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPE-DKARYSCRVEH 81 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCC-CCCEEEEEEEe
Confidence 467899999999999999999876453222222 2223455654 4555444 44555565544
No 106
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=24.36 E-value=1.1e+02 Score=21.29 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=19.4
Q ss_pred CCCCCCCeEEEEEcCcEEEEEEe
Q 039913 27 PRMKENDVKIEVEENRVLRVSGR 49 (128)
Q Consensus 27 PG~~~edi~V~v~~~~~L~I~g~ 49 (128)
.|+...++.|.+.+ +.++++|.
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~ 59 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGD 59 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEE
Confidence 47778889999998 89999998
No 107
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=23.91 E-value=2e+02 Score=18.17 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=13.8
Q ss_pred CeEEEEeCCEEEEEEecc
Q 039913 71 HVKALLENGVLRITVPKL 88 (128)
Q Consensus 71 ~i~A~~~~G~L~I~~pK~ 88 (128)
.+.+.++||-.++++-..
T Consensus 69 ~l~i~~kDgk~r~~~~~i 86 (91)
T PF14730_consen 69 TLIIDCKDGKYRLTITNI 86 (91)
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 467778899998888643
No 108
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=23.53 E-value=54 Score=21.57 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=12.5
Q ss_pred EEEEeCCEEEEEEec
Q 039913 73 KALLENGVLRITVPK 87 (128)
Q Consensus 73 ~A~~~~G~L~I~~pK 87 (128)
.+.+.+|+|+|+++.
T Consensus 30 D~e~~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYSSGVLTLELPS 44 (97)
T ss_pred ccccCCCEEEEEECC
Confidence 667789999999963
No 109
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=22.98 E-value=2.3e+02 Score=18.68 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=21.1
Q ss_pred EEEEECCCCcccCCeEEEEeCCEEEEEEec
Q 039913 58 WMQFRMPMSADLEHVKALLENGVLRITVPK 87 (128)
Q Consensus 58 ~r~~~LP~~vd~~~i~A~~~~G~L~I~~pK 87 (128)
.-.|+||.+.-.....+.+.+..+.=.+-.
T Consensus 38 ~y~fpLp~~A~i~~f~~~i~g~~i~g~v~e 67 (118)
T PF08487_consen 38 VYSFPLPEGAAISGFSMWIGGRTIEGEVKE 67 (118)
T ss_pred EEEeECCCCeEEEEEEEEECCEEEEEEEec
Confidence 345899998888888888766665555433
No 110
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=22.48 E-value=2.4e+02 Score=19.96 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=19.3
Q ss_pred CCEEEEEEEcCCC---CCCCeEEEEEcCc
Q 039913 17 RTAHVITLDIPRM---KENDVKIEVEENR 42 (128)
Q Consensus 17 ~~~~~l~~~lPG~---~~edi~V~v~~~~ 42 (128)
.+.|.+.+.+|.+ ....|.|.+.-++
T Consensus 48 ~N~yt~~~~aPd~~~~pag~V~v~v~~~g 76 (142)
T PF14545_consen 48 ENPYTLQFKAPDFCLEPAGSVNVRVYCDG 76 (142)
T ss_pred ECCEEEEEECchhcCCCCceEEEEEEECC
Confidence 3678888888888 7778888886534
No 111
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=21.83 E-value=2.8e+02 Score=23.83 Aligned_cols=41 Identities=15% Similarity=0.344 Sum_probs=34.3
Q ss_pred CCCceeeEEEcCCEEEEEEEcCC-CCCCCeEEEEEcCcEEEEE
Q 039913 6 LALARADWKETRTAHVITLDIPR-MKENDVKIEVEENRVLRVS 47 (128)
Q Consensus 6 ~~~p~~di~e~~~~~~l~~~lPG-~~~edi~V~v~~~~~L~I~ 47 (128)
.-.|.+-|..++|...+++.+|- .+.++|.|+.-. +.|.|.
T Consensus 287 ~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~-~~v~v~ 328 (596)
T KOG4379|consen 287 GGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSK-TTVVVK 328 (596)
T ss_pred cCCccceeeeccCcceEEEecccccccceEEEEecC-ceEEEE
Confidence 34678889999999999999995 588999999988 566665
No 112
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=21.63 E-value=2.3e+02 Score=18.37 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=16.6
Q ss_pred EEEEEEeeeceeeeEEEEE-ECCCCcccCCeEEEEeCCEEEEEEecc
Q 039913 43 VLRVSGRGRRTSGTFWMQF-RMPMSADLEHVKALLENGVLRITVPKL 88 (128)
Q Consensus 43 ~L~I~g~~e~~~~~f~r~~-~LP~~vd~~~i~A~~~~G~L~I~~pK~ 88 (128)
.+.++|+. ...-.|++ .+| +.|.+++..|.|.+...
T Consensus 10 ~I~l~g~~---~~~~~RSi~~~P-------i~a~i~~~~l~I~F~~~ 46 (106)
T PF11589_consen 10 PIPLKGKW---DDKTHRSIPPIP-------ITASIDGNNLSIEFESP 46 (106)
T ss_dssp EE--EEE---------------S-------EEEEEETTEEEEEESS-
T ss_pred eEEeccee---ccCCCccccccC-------cEEEEeCCEEEEEEcCC
Confidence 35555541 12345666 334 77888999999999754
No 113
>PRK05090 hypothetical protein; Validated
Probab=21.41 E-value=2.3e+02 Score=18.53 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=26.0
Q ss_pred EEEcCCEEEEEEEc-CCCCCCCeEEEEEcCcEEEEEEe
Q 039913 13 WKETRTAHVITLDI-PRMKENDVKIEVEENRVLRVSGR 49 (128)
Q Consensus 13 i~e~~~~~~l~~~l-PG~~~edi~V~v~~~~~L~I~g~ 49 (128)
+..+++.++|.+.+ ||-+++.|.- +.+ +.|.|+-.
T Consensus 4 ~~~~~~~~~l~i~V~P~A~~~~i~~-~~~-~~lkv~v~ 39 (95)
T PRK05090 4 VTWDGDGLVLRLYIQPKASRDQIVG-LHG-DELKVAIT 39 (95)
T ss_pred eEEeCCeEEEEEEEeeCCCcceecc-ccC-CEEEEEEe
Confidence 55688889999987 7888887654 345 67887755
No 114
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=21.26 E-value=2.5e+02 Score=20.26 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEE
Q 039913 30 KENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRIT 84 (128)
Q Consensus 30 ~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~ 84 (128)
.+.++.+.... +.+.|+|......| .+. ....-..=.+.-.+++|.|.|.
T Consensus 129 ~~~~i~v~~~~-~~V~V~G~l~~~vg--~~~--~~~~~k~y~~~~~~~~g~~~L~ 178 (181)
T TIGR02761 129 YPKSVEWNPQE-GTVKVRGHLKRFVG--GRL--LSDERKTYLLRFSYSGGRLVLD 178 (181)
T ss_pred EeeeEEEccCC-CEEEEEEEEEEEEC--Cee--ccccceEEEEEEEEcCCEEEEe
Confidence 34566666666 67888776222122 011 1111122235566778888775
No 115
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=21.17 E-value=78 Score=20.24 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=17.6
Q ss_pred CCCCCCeEEEEEcCcEEEEEEe
Q 039913 28 RMKENDVKIEVEENRVLRVSGR 49 (128)
Q Consensus 28 G~~~edi~V~v~~~~~L~I~g~ 49 (128)
-|+.+.|.+.... +.|.|+|+
T Consensus 40 ~y~~~~I~l~t~~-G~l~I~G~ 60 (85)
T TIGR02856 40 VFSPEEVKLNSTN-GKITIEGK 60 (85)
T ss_pred EECCCEEEEEcCc-eEEEEEcc
Confidence 4588888888888 89999987
No 116
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.44 E-value=1.7e+02 Score=19.65 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=26.2
Q ss_pred CeEEEEeCCEEEEEEeccccccCCCCeEEEecceecCccc
Q 039913 71 HVKALLENGVLRITVPKLAEEKKSRPKVISISGFFCTIAD 110 (128)
Q Consensus 71 ~i~A~~~~G~L~I~~pK~~~~~~~~~~~I~I~~~~~~~~~ 110 (128)
.+..++-+|+.+|++--.. ..+.|.|.....+|.|
T Consensus 32 ev~g~aggGlVtV~~~G~~-----ev~~v~Idp~l~dpeD 66 (105)
T COG0718 32 EVTGKAGGGLVTVTINGKG-----EVKSVEIDPSLLDPED 66 (105)
T ss_pred EEeeecCCcEEEEEEeCCC-----cEEEEEeCHHHcCccc
Confidence 4567778999999998654 5788999877666533
No 117
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=20.31 E-value=4.7e+02 Score=21.36 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=39.4
Q ss_pred CCce-eeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe--ee---ceeeeEEEEEECCCCcccCC-eEE-----
Q 039913 7 ALAR-ADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR--GR---RTSGTFWMQFRMPMSADLEH-VKA----- 74 (128)
Q Consensus 7 ~~p~-~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~--~e---~~~~~f~r~~~LP~~vd~~~-i~A----- 74 (128)
..|. +.|+...+..+=.+...+ ..=+.+....+..|+|--. .- ...|.| .|.|+..+...+ +.|
T Consensus 58 ~~p~~I~iys~sG~ll~~i~w~~--~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 58 AKPNSIQIYSSSGKLLSSIPWDS--GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAI 133 (410)
T ss_pred CCCcEEEEECCCCCEeEEEEECC--CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhhhccccCccccccccc
Confidence 3454 888888887777777765 2333333333223333222 00 123566 788887774433 233
Q ss_pred E-EeCCEEEEE
Q 039913 75 L-LENGVLRIT 84 (128)
Q Consensus 75 ~-~~~G~L~I~ 84 (128)
. +++|+..++
T Consensus 134 ~~~~~GivvLt 144 (410)
T PF04841_consen 134 WFYKNGIVVLT 144 (410)
T ss_pred ccCCCCEEEEC
Confidence 2 358876655
Done!