Query 039913
Match_columns 128
No_of_seqs 199 out of 1118
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 04:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039913.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039913hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gmea_ b.15.1.1 (A:) Small he 99.9 7.3E-26 5.3E-30 158.5 11.2 97 6-103 40-150 (150)
2 d1shsa_ b.15.1.1 (A:) Small he 99.9 1.8E-25 1.3E-29 149.8 12.3 93 6-102 8-115 (115)
3 d1rl1a_ b.15.1.3 (A:) Suppress 98.6 1E-07 7.2E-12 59.7 8.2 82 7-90 1-82 (92)
4 d1ejfa_ b.15.1.2 (A:) Co-chape 98.0 2E-05 1.5E-09 50.4 8.8 82 7-91 2-83 (110)
5 d1wh0a_ b.15.1.3 (A:) Ubiquiti 97.8 0.00014 1E-08 48.3 9.8 83 8-91 19-113 (134)
6 d1wfia_ b.15.1.4 (A:) Nuclear 97.4 0.00033 2.4E-08 46.1 7.9 82 5-91 4-89 (131)
7 d1wgva_ b.15.1.4 (A:) NudC dom 97.3 0.0019 1.4E-07 41.6 10.3 80 8-89 19-101 (124)
8 d1rl6a1 d.141.1.1 (A:7-81) Rib 88.4 1 7.6E-05 25.8 6.5 43 31-85 5-47 (75)
9 d1vqoe1 d.141.1.1 (E:1-79) Rib 88.3 0.76 5.6E-05 26.6 5.9 44 31-85 8-51 (79)
10 d2cqla1 d.141.1.1 (A:1-87) Rib 78.9 1.5 0.00011 25.7 4.2 47 31-85 13-59 (87)
11 d1shsa_ b.15.1.1 (A:) Small he 78.5 4.9 0.00036 24.1 9.3 31 60-91 25-55 (115)
12 d2j01h1 d.141.1.1 (H:12-82) Ri 52.0 3.1 0.00022 23.3 1.5 42 31-84 1-42 (71)
13 d1gmea_ b.15.1.1 (A:) Small he 51.3 8.1 0.00059 24.3 3.8 29 19-48 104-133 (150)
14 d1vqoe2 d.141.1.1 (E:80-172) R 42.2 30 0.0022 20.4 5.9 30 34-67 14-43 (93)
15 d2qamg1 d.141.1.1 (G:1-81) Rib 42.1 0.93 6.8E-05 26.4 -2.0 43 31-85 11-53 (81)
16 d1h8la1 b.3.2.1 (A:305-383) Ca 39.8 11 0.00081 20.7 2.7 28 17-44 43-70 (79)
17 d2fqla1 d.82.2.1 (A:61-172) C- 33.0 15 0.0011 22.2 2.7 18 70-87 38-55 (112)
18 d1ekga_ d.82.2.1 (A:) C-termin 31.8 15 0.0011 22.4 2.6 18 70-87 32-49 (119)
19 d1tvfa1 b.105.1.2 (A:316-383) 31.1 20 0.0015 19.8 2.8 25 64-88 29-53 (68)
20 d1ew4a_ d.82.2.1 (A:) CyaY {Es 29.4 16 0.0012 21.9 2.3 17 71-87 29-45 (106)
21 d2nwta1 b.129.2.2 (A:1-61) Unc 26.8 26 0.0019 18.7 2.6 31 70-102 3-33 (61)
22 d2mhaa1 b.1.1.2 (A:182-270) Cl 26.0 51 0.0037 18.2 4.6 30 16-45 14-43 (89)
23 d1nvpc_ b.56.1.1 (C:) Large ch 22.9 18 0.0013 18.7 1.4 14 70-83 18-31 (47)
24 d2zjre2 d.141.1.1 (E:5-82) Rib 20.9 3.7 0.00027 23.4 -2.0 18 31-49 8-25 (78)
No 1
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=99.93 E-value=7.3e-26 Score=158.47 Aligned_cols=97 Identities=53% Similarity=0.750 Sum_probs=87.0
Q ss_pred CCCceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe--------------eeceeeeEEEEEECCCCcccCC
Q 039913 6 LALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR--------------GRRTSGTFWMQFRMPMSADLEH 71 (128)
Q Consensus 6 ~~~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~--------------~e~~~~~f~r~~~LP~~vd~~~ 71 (128)
.+.|++||.+++++|+|+++|||++++||+|.+.+++.|+|+|+ +|+.++.|.|+|.||.+||.++
T Consensus 40 ~~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 119 (150)
T d1gmea_ 40 FANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEE 119 (150)
T ss_dssp HGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGG
T ss_pred cCCCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeece
Confidence 35689999999999999999999999999999986468999997 5677889999999999999999
Q ss_pred eEEEEeCCEEEEEEeccccccCCCCeEEEecc
Q 039913 72 VKALLENGVLRITVPKLAEEKKSRPKVISISG 103 (128)
Q Consensus 72 i~A~~~~G~L~I~~pK~~~~~~~~~~~I~I~~ 103 (128)
|+|+|+||+|+|++||.... ..+.++|+|+|
T Consensus 120 i~A~~~nGvL~I~lpK~~~~-~~~~~~I~I~g 150 (150)
T d1gmea_ 120 VKAGLENGVLTVTVPKAEVK-KPEVKAIQISG 150 (150)
T ss_dssp CEEEEETTEEEEEEECCCCC-TTCCCCCCCCC
T ss_pred eEEEEECCEEEEEEEcCCcC-CCCceEEeccC
Confidence 99999999999999998766 45677888875
No 2
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.93 E-value=1.8e-25 Score=149.82 Aligned_cols=93 Identities=18% Similarity=0.285 Sum_probs=84.2
Q ss_pred CCCceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEe---------------eeceeeeEEEEEECCCCcccC
Q 039913 6 LALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR---------------GRRTSGTFWMQFRMPMSADLE 70 (128)
Q Consensus 6 ~~~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~---------------~e~~~~~f~r~~~LP~~vd~~ 70 (128)
...+++||++++++|.|.++|||+++++|+|++.+ +.|+|+|+ .++.++.|.|+|.||..+|.+
T Consensus 8 ~~~~pvdi~e~~~~~~i~~~lPG~~~edi~v~v~~-~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~ 86 (115)
T d1shsa_ 8 KGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEE 86 (115)
T ss_dssp ESCCCEEEEECSSEEEEEEECTTCCGGGEEEEEET-TEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGG
T ss_pred CCcCceEEEEcCCEEEEEEECCCCCHHHEEEEEEC-CEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeec
Confidence 45678999999999999999999999999999999 79999998 234578999999999999999
Q ss_pred CeEEEEeCCEEEEEEeccccccCCCCeEEEec
Q 039913 71 HVKALLENGVLRITVPKLAEEKKSRPKVISIS 102 (128)
Q Consensus 71 ~i~A~~~~G~L~I~~pK~~~~~~~~~~~I~I~ 102 (128)
+++|.|+||+|+|++||.... .+++|+|+
T Consensus 87 ~i~A~~~nGvL~I~lpK~~~~---~~~~I~Ie 115 (115)
T d1shsa_ 87 NASAKFENGVLSVILPKAESS---IKKGINIE 115 (115)
T ss_dssp GCEEEEETTEEEEEEEBCGGG---CCEECCCC
T ss_pred ceEEEEECCEEEEEEEeCCCC---CCceeeeC
Confidence 999999999999999998754 57888875
No 3
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.62 E-value=1e-07 Score=59.69 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=70.5
Q ss_pred CCceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 7 ALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 7 ~~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
+.++++|+++++...|.+.+||+.++++.|.+.. ..|.+.... .....|...+.|...|+++..+.++.++.|.|+|.
T Consensus 1 sk~ry~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~-~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~ 78 (92)
T d1rl1a_ 1 SKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSE-KELSALVKL-PSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLK 78 (92)
T ss_dssp CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSS-SCEEEEEEC-TTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEE
T ss_pred CCCceeEEeCCCEEEEEEEeCCCChHheEEEEec-CEEEEEEEc-CCCcEEEEEEEcCcccCchhcEEEEeCCEEEEEEE
Confidence 3578999999999999999999999999999999 788887541 12245888899999999999999999999999999
Q ss_pred cccc
Q 039913 87 KLAE 90 (128)
Q Consensus 87 K~~~ 90 (128)
|..+
T Consensus 79 K~~~ 82 (92)
T d1rl1a_ 79 KPEA 82 (92)
T ss_dssp CSSC
T ss_pred ECCC
Confidence 9754
No 4
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.02 E-value=2e-05 Score=50.37 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=67.7
Q ss_pred CCceeeEEEcCCEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 039913 7 ALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86 (128)
Q Consensus 7 ~~p~~di~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~p 86 (128)
..|++.|+++.+...|.+.+|+. .++.|.+.. +.|.+++........|.-.+.|...|+++..+.++.++.|.|+|-
T Consensus 2 ~p~~~~W~Qt~~~V~i~I~v~~~--~~~~v~i~~-~~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~~kiei~L~ 78 (110)
T d1ejfa_ 2 QPASAKWYDRRDYVFIEFCVEDS--KDVNVNFEK-SKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLR 78 (110)
T ss_dssp BCCCEEEEECSSEEEEEECCTTE--EEEEEEEET-TEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEE
T ss_pred CCCCcEEEECCCEEEEEEEeCCC--CCceEEEEe-ceEEEEEEecCCCceEEEEEEcccCcccCccEEEEeCCEEEEEEE
Confidence 34678999999999999999985 578888888 688888763333346788899999999999999999999999999
Q ss_pred ccccc
Q 039913 87 KLAEE 91 (128)
Q Consensus 87 K~~~~ 91 (128)
|....
T Consensus 79 K~~~~ 83 (110)
T d1ejfa_ 79 KGESG 83 (110)
T ss_dssp ESSTT
T ss_pred EcCCC
Confidence 87653
No 5
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.76 E-value=0.00014 Score=48.35 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=69.7
Q ss_pred CceeeEEEcC-CEEEEEEEcCCCCCCCeEEEEEcCcEEEEEEeee-----------ceeeeEEEEEECCCCcccCCeEEE
Q 039913 8 LARADWKETR-TAHVITLDIPRMKENDVKIEVEENRVLRVSGRGR-----------RTSGTFWMQFRMPMSADLEHVKAL 75 (128)
Q Consensus 8 ~p~~di~e~~-~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~e-----------~~~~~f~r~~~LP~~vd~~~i~A~ 75 (128)
..+-||++++ +...|.+.+.|+.++++.|.+.+ +.|.|.-... .....|.-.+.|-..|+++.-+.+
T Consensus 19 ~ir~dwyq~~~~~V~VtI~~K~v~ke~~~V~f~~-~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~~ 97 (134)
T d1wh0a_ 19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFRE-QDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFC 97 (134)
T ss_dssp CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECS-SEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEE
T ss_pred ccccceeecCCCEEEEEEEeCCCchhheEEEEeC-CEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEEE
Confidence 4477899985 79999999999999999999999 7999985400 112368889999999999999999
Q ss_pred EeCCEEEEEEeccccc
Q 039913 76 LENGVLRITVPKLAEE 91 (128)
Q Consensus 76 ~~~G~L~I~~pK~~~~ 91 (128)
+....+.|+|-|....
T Consensus 98 v~~~kiei~L~K~~~~ 113 (134)
T d1wh0a_ 98 FTASRIDICLRKRQSQ 113 (134)
T ss_dssp ECSSEEEEEEEESSSC
T ss_pred eCCCEEEEEEEeCCCC
Confidence 9999999999997643
No 6
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.43 E-value=0.00033 Score=46.08 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=63.0
Q ss_pred CCCCceeeEEEcCCEEEEEEEcC---CCCCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCC-E
Q 039913 5 TLALARADWKETRTAHVITLDIP---RMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENG-V 80 (128)
Q Consensus 5 ~~~~p~~di~e~~~~~~l~~~lP---G~~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G-~ 80 (128)
....|.+.|.++.+...|.+.+| ++++++|.|.+.. +.|.|..... ..| -.-.|...|+++.-.-.++++ .
T Consensus 4 G~~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~-~~l~v~v~~~---~~l-l~g~L~~~I~~des~W~ied~~~ 78 (131)
T d1wfia_ 4 GSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQR-RHLRVGLKGQ---PPV-VDGELYNEVKVEESSWLIEDGKV 78 (131)
T ss_dssp SSSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEET-TEEEEEETTS---CCS-BCSCBSSCBCSTTCEEEEETTTE
T ss_pred CCCCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeC-CEEEEEEcCC---cee-ecccccCcccccccEEEEeCCCE
Confidence 34578999999999998888764 7899999999999 7888875411 111 112678889998888888865 8
Q ss_pred EEEEEeccccc
Q 039913 81 LRITVPKLAEE 91 (128)
Q Consensus 81 L~I~~pK~~~~ 91 (128)
|.|.|-|....
T Consensus 79 l~i~L~K~~~~ 89 (131)
T d1wfia_ 79 VTVHLEKINKM 89 (131)
T ss_dssp EEEEEEBSSSC
T ss_pred EEEEEEECCCC
Confidence 99999997643
No 7
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.29 E-value=0.0019 Score=41.57 Aligned_cols=80 Identities=16% Similarity=0.278 Sum_probs=61.0
Q ss_pred CceeeEEEcCCEEEEEEEcC-CC-CCCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCC-EEEEE
Q 039913 8 LARADWKETRTAHVITLDIP-RM-KENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENG-VLRIT 84 (128)
Q Consensus 8 ~p~~di~e~~~~~~l~~~lP-G~-~~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G-~L~I~ 84 (128)
.+.+.|.++.+.+.|++.|| |. +.++|.|.+.. +.|.|.-... ....+.-...|...|+++.-...++++ +|.+.
T Consensus 19 ~~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~-~~l~v~v~~~-~~~~~~l~g~L~~~I~~deS~w~i~~~~~~i~~ 96 (124)
T d1wgva_ 19 RENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSS-SSIRVAMLEE-NGERVLMEGKLTHKINTESSLWSLEPGKCVLVN 96 (124)
T ss_dssp CSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECS-SEEEEEEECS-SSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEE
T ss_pred CCCeEEEeECCEEEEEEEeCCCCcchhhEEEEEEe-CEEEEEEecc-CCcceEEeCcccCcccccccEEEEeCCCEEEEE
Confidence 56799999999999999999 43 56899999999 7888874411 112455567899999999999999877 45556
Q ss_pred Eeccc
Q 039913 85 VPKLA 89 (128)
Q Consensus 85 ~pK~~ 89 (128)
+.|..
T Consensus 97 lkK~~ 101 (124)
T d1wgva_ 97 LSKVG 101 (124)
T ss_dssp ECBSS
T ss_pred EEecC
Confidence 66554
No 8
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=88.39 E-value=1 Score=25.80 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEE
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITV 85 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~ 85 (128)
|++++|++++ +.|.|+|. -|...+. ||.. +....+++.|.|..
T Consensus 5 P~gV~v~i~~-~~i~vkGp----kG~L~~~--~~~~-----v~i~~~~~~i~v~~ 47 (75)
T d1rl6a1 5 PAGVTVTVNG-NTVTVKGP----KGELTRT--FHPD-----MTITVEGNVITVTR 47 (75)
T ss_dssp CTTCEEEEET-TEEEEEET----TEEEEEE--CCTT-----CEEEEETTEEEEEC
T ss_pred CCCcEEEEEC-CEEEEEeC----CEEEEEe--ccCc-----EEEEEeCceEEEcc
Confidence 5789999999 89999987 6766644 5654 55678999988874
No 9
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=88.32 E-value=0.76 Score=26.61 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEE
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITV 85 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~ 85 (128)
+++++|++++ +.|.|+|. .|...+.| |. ..+....+++.|.|..
T Consensus 8 P~~V~v~i~~-~~i~vkGp----~G~L~~~~--~~----~~v~i~~~~~~i~v~~ 51 (79)
T d1vqoe1 8 PEDVDAEQDH-LDITVEGD----NGSVTRRL--WY----PDIDVSVDGDTVVIES 51 (79)
T ss_dssp CSSCEEEEET-TEEEEEET----TEEEEEEC--CC----TTCEEEECSSEEEEEC
T ss_pred CCCcEEEEeC-CEEEEEcC----CeEEEEEc--cC----CeEEEEEcCCEEEecc
Confidence 5789999999 89999987 77777665 32 2356677888887764
No 10
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.88 E-value=1.5 Score=25.73 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEE
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITV 85 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~ 85 (128)
|++++|++++ +.|.|+|. .|...+.|.-| ..+......+++.|.+.-
T Consensus 13 P~gV~v~i~~-~~i~vkGp----kG~L~~~~~~~---~v~~~~~~~~~~~i~v~~ 59 (87)
T d2cqla1 13 PENVDITLKG-RTVIVKGP----RGTLRRDFNHI---NVELSLLGKKKKRLRVDK 59 (87)
T ss_dssp CSSCEEEEET-TEEEEEET----TEEEEEECCSS---CCEEEEECSSSCEEEEEC
T ss_pred CCCCEEEEeC-CEEEEEcC----CcEEEEEecCC---cceEEEeeccccEEEeec
Confidence 5788999999 78999987 77777666432 111122223456666653
No 11
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=78.47 E-value=4.9 Score=24.05 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=26.5
Q ss_pred EEECCCCcccCCeEEEEeCCEEEEEEeccccc
Q 039913 60 QFRMPMSADLEHVKALLENGVLRITVPKLAEE 91 (128)
Q Consensus 60 ~~~LP~~vd~~~i~A~~~~G~L~I~~pK~~~~ 91 (128)
.+.|| +++.+.+.-.++++.|+|+.-+....
T Consensus 25 ~~~lP-G~~~edi~v~v~~~~l~I~~~~~~~~ 55 (115)
T d1shsa_ 25 IAWLP-GVNKEDIILNAVGDTLEIRAKRSPLM 55 (115)
T ss_dssp EEECT-TCCGGGEEEEEETTEEEEEEECCCCC
T ss_pred EEECC-CCCHHHEEEEEECCEEEEEEEecccc
Confidence 37899 79999999999999999998765543
No 12
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=51.99 E-value=3.1 Score=23.31 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEE
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRIT 84 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~ 84 (128)
|+.++|++.+ +.|.|+|. .|...+. ||..+ ....+++.|.|.
T Consensus 1 P~gV~v~i~~-~~v~vkGp----kG~l~~~--~~~~i-----~i~~~~~~i~v~ 42 (71)
T d2j01h1 1 PKGVSVEVAP-GRVKVKGP----KGELEVP--VSPEM-----RVVVEEGVVRVE 42 (71)
T ss_dssp CTTCEEEECS-SCEEEECS----SCCEECC--CCSSS-----CCCCCSSSCCCC
T ss_pred CCceEEEEEC-CEEEEECC----CEEEEEE--ccCce-----EEEEeCCEEEEE
Confidence 5788999988 78999977 6665544 45443 233455655443
No 13
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=51.31 E-value=8.1 Score=24.28 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=24.9
Q ss_pred EEEEEEEcC-CCCCCCeEEEEEcCcEEEEEE
Q 039913 19 AHVITLDIP-RMKENDVKIEVEENRVLRVSG 48 (128)
Q Consensus 19 ~~~l~~~lP-G~~~edi~V~v~~~~~L~I~g 48 (128)
.|.-.+.|| .++.+.|+-.+.+ |.|+|+-
T Consensus 104 ~f~r~~~LP~~vd~~~i~A~~~n-GvL~I~l 133 (150)
T d1gmea_ 104 KFVRRFRLLEDAKVEEVKAGLEN-GVLTVTV 133 (150)
T ss_dssp CEEEEEECSSCCCGGGCEEEEET-TEEEEEE
T ss_pred eEEEEEECCCCeeeceeEEEEEC-CEEEEEE
Confidence 466679999 7999999999988 8999984
No 14
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=42.23 E-value=30 Score=20.36 Aligned_cols=30 Identities=7% Similarity=-0.010 Sum_probs=13.3
Q ss_pred eEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCc
Q 039913 34 VKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSA 67 (128)
Q Consensus 34 i~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~v 67 (128)
|.|.+++ +.+.|+- .-...+-|.+.+|.++
T Consensus 14 i~v~v~g-~~v~I~N---FlGEK~~R~~~i~~gv 43 (93)
T d1vqoe2 14 MQVNVEG-DEVVIEN---FLGEKAPRRTTIHGDT 43 (93)
T ss_dssp CEEEEET-TEEEEES---GGGCSSCEEEECCTTC
T ss_pred eEEEEcC-CEEEEEe---ccCCceeEEEEecCCC
Confidence 3455555 4555541 1112334555555443
No 15
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=42.05 E-value=0.93 Score=26.43 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCcEEEEEEeeeceeeeEEEEEECCCCcccCCeEEEEeCCEEEEEE
Q 039913 31 ENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITV 85 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G~L~I~~ 85 (128)
|++++|++.+ +.|.|+|. .|...+.| |. .+....+|+.|.|..
T Consensus 11 P~~V~v~i~~-~~i~vkGp----~G~l~~~~--~~-----~v~i~~~~~~i~v~~ 53 (81)
T d2qamg1 11 PAGVDVKING-QVITIKGK----NGELTRTL--ND-----AVEVKHADNTLTFGP 53 (81)
T ss_dssp CSSCCCCCBT-TEECCCCS----SSCCCCEE--CC-----SEEEECSSSSCEEEE
T ss_pred CCCCEEEEEC-CEEEEEeC----CEEEEEEe--cC-----CcEEEEcCCEEEEEe
Confidence 5778888888 78888877 56655554 33 356667777777764
No 16
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Probab=39.82 E-value=11 Score=20.69 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=21.3
Q ss_pred CCEEEEEEEcCCCCCCCeEEEEEcCcEE
Q 039913 17 RTAHVITLDIPRMKENDVKIEVEENRVL 44 (128)
Q Consensus 17 ~~~~~l~~~lPG~~~edi~V~v~~~~~L 44 (128)
.+.|.|.+..+|+.+....|.+..+..+
T Consensus 43 ~G~y~l~vs~~Gy~~~~~~v~v~~~~~~ 70 (79)
T d1h8la1 43 QGTYKVTASARGYDPVTKTVEVDSKGGV 70 (79)
T ss_dssp SEEEEEEEECTTBCCEEEEEEECSSCEE
T ss_pred cccEEEEEEEEEeccEEEEEEECCCCeE
Confidence 4678899999999888888888763443
No 17
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.01 E-value=15 Score=22.18 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.8
Q ss_pred CCeEEEEeCCEEEEEEec
Q 039913 70 EHVKALLENGVLRITVPK 87 (128)
Q Consensus 70 ~~i~A~~~~G~L~I~~pK 87 (128)
..+.+.+.+|+|+|+++.
T Consensus 38 ~d~D~e~~~gvLti~~~~ 55 (112)
T d2fqla1 38 CIPDVELSHGVMTLEIPA 55 (112)
T ss_dssp SSCEEECCSSEEEEEETT
T ss_pred cceeeeccCCEEEEEECC
Confidence 357788899999999963
No 18
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.79 E-value=15 Score=22.45 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.4
Q ss_pred CCeEEEEeCCEEEEEEec
Q 039913 70 EHVKALLENGVLRITVPK 87 (128)
Q Consensus 70 ~~i~A~~~~G~L~I~~pK 87 (128)
..+.+.+.+|+|+|+++.
T Consensus 32 ~d~D~e~~~gvLti~f~~ 49 (119)
T d1ekga_ 32 EDYDVSFGSGVLTVKLGG 49 (119)
T ss_dssp TTCEEEEETTEEEEECCT
T ss_pred cceeeeccCCEEEEEECC
Confidence 468899999999999963
No 19
>d1tvfa1 b.105.1.2 (A:316-383) Pencillin binding protein 4 (PbpD), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=31.06 E-value=20 Score=19.84 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=13.2
Q ss_pred CCCcccCCeEEEEeCCEEEEEEecc
Q 039913 64 PMSADLEHVKALLENGVLRITVPKL 88 (128)
Q Consensus 64 P~~vd~~~i~A~~~~G~L~I~~pK~ 88 (128)
|.+......+..++||.+.|..++.
T Consensus 29 pK~~~k~~~k~~v~dgkv~vdy~r~ 53 (68)
T d1tvfa1 29 PSDFSKKDYKLVVEDGKVHADYPRE 53 (68)
T ss_dssp ETTCCGGGCEEEEETTEEEEECSCC
T ss_pred cCCCCccCceEEEeCCeEEEecccc
Confidence 4444444455555666666665543
No 20
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=29.41 E-value=16 Score=21.88 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.6
Q ss_pred CeEEEEeCCEEEEEEec
Q 039913 71 HVKALLENGVLRITVPK 87 (128)
Q Consensus 71 ~i~A~~~~G~L~I~~pK 87 (128)
.+.+.+.+|+|+|+++.
T Consensus 29 d~D~e~~~gvLti~~~~ 45 (106)
T d1ew4a_ 29 DIDCEINGGVLTITFEN 45 (106)
T ss_dssp CCEEEEETTEEEEECTT
T ss_pred CeeeeccCCEEEEEECC
Confidence 47788999999999964
No 21
>d2nwta1 b.129.2.2 (A:1-61) Uncharacterized protein AF2212 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.78 E-value=26 Score=18.67 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=17.6
Q ss_pred CCeEEEEeCCEEEEEEeccccccCCCCeEEEec
Q 039913 70 EHVKALLENGVLRITVPKLAEEKKSRPKVISIS 102 (128)
Q Consensus 70 ~~i~A~~~~G~L~I~~pK~~~~~~~~~~~I~I~ 102 (128)
.-|.|.|+||++. -+.|..-. ..+.-+|.|+
T Consensus 3 kiIeaiYengVFk-PLqKvdlk-~Gek~~i~ie 33 (61)
T d2nwta1 3 KIIEAVYENGVFK-PLQKVDLK-EGERVKIKLE 33 (61)
T ss_dssp CCEEEEEETTEEE-ESSCCCCC-TTEEEEEECC
T ss_pred eeEeEeeeCCccc-hhhhcccC-CCcEEEEEEE
Confidence 4589999999876 23343332 2233344444
No 22
>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.95 E-value=51 Score=18.20 Aligned_cols=30 Identities=7% Similarity=-0.093 Sum_probs=24.0
Q ss_pred cCCEEEEEEEcCCCCCCCeEEEEEcCcEEE
Q 039913 16 TRTAHVITLDIPRMKENDVKIEVEENRVLR 45 (128)
Q Consensus 16 ~~~~~~l~~~lPG~~~edi~V~v~~~~~L~ 45 (128)
.++...|...+-||.+.+|.|....++...
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~ 43 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEEL 43 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEEE
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEe
Confidence 456788999999999999999997545543
No 23
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.93 E-value=18 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=10.8
Q ss_pred CCeEEEEeCCEEEE
Q 039913 70 EHVKALLENGVLRI 83 (128)
Q Consensus 70 ~~i~A~~~~G~L~I 83 (128)
..-++.|+||++.|
T Consensus 18 nKWKc~lKdGim~i 31 (47)
T d1nvpc_ 18 NKWKFHLKDGIMNL 31 (47)
T ss_dssp TEEEEEEEEEEEEE
T ss_pred ceEEEEEEeeEEEE
Confidence 34578889999887
No 24
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=20.86 E-value=3.7 Score=23.39 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=12.8
Q ss_pred CCCeEEEEEcCcEEEEEEe
Q 039913 31 ENDVKIEVEENRVLRVSGR 49 (128)
Q Consensus 31 ~edi~V~v~~~~~L~I~g~ 49 (128)
|++++|++.+ +.|.|+|.
T Consensus 8 P~~V~v~i~~-~~v~vkGp 25 (78)
T d2zjre2 8 PSGVTVNAQD-GVFKVKGP 25 (78)
T ss_dssp CTTCCEECCT-TCCEECCS
T ss_pred CCCCEEEEEC-CEEEEEcC
Confidence 5677777777 67777766
Done!