RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 039913
(128 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 107 bits (269), Expect = 4e-31
Identities = 55/112 (49%), Positives = 66/112 (58%), Gaps = 15/112 (13%)
Query: 6 LALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSG--------------RGR 51
A AR DWKET AHV D+P +K+ +VK+EVE+ VL VSG R
Sbjct: 41 FANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVE 100
Query: 52 RTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPKLAEEKKSRPKVISISG 103
R+SG F +FR+ A +E VKA LENGVL +TVPK AE KK K I ISG
Sbjct: 101 RSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK-AEVKKPEVKAIQISG 151
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 90.0 bits (224), Expect = 1e-24
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 12/103 (11%)
Query: 4 QTLALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSG----------RGRRT 53
L D E V+ D+ + +K V L + +
Sbjct: 20 YELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQR 79
Query: 54 SGTFWMQFRMPMSADLE-HVKALLENGVLRITVPKLAEEKKSR 95
R+P + + + ENGVL I +P A +
Sbjct: 80 PKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPI-AGTSVFK 121
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 87.5 bits (218), Expect = 5e-24
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 10 RADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSG--------------RGRRTSG 55
R D KE V+ D+P + + +++++++ +L + G R R G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 64
Query: 56 TFWMQFRMPMSADLEHVKALLENGVLRITVPKLAE 90
+F +F +P SAD + + A NGVL I +PK
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPKRPA 99
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 86.7 bits (215), Expect = 5e-23
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 19/107 (17%)
Query: 10 RADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSG---------------RGRRTS 54
E + +P + + D+ + + L +
Sbjct: 58 PISIIEGDQHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEE 116
Query: 55 GTFWMQFRMPMSADLEHVKALLENGVLRITVPKLAEEKKSRPKVISI 101
+ ++P + E+ A ENGVL + +PK K I+I
Sbjct: 117 EEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSI---KKGINI 160
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 67.3 bits (164), Expect = 3e-15
Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 2 HHQTLALARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR-------GRRTS 54
++ + + + LD+ ++K++V + + V G+ S
Sbjct: 57 APSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDV-IEVHGKHEERQDEHGFIS 115
Query: 55 GTFWMQFRMPMSADLEHVKA-LLENGVLRITVPKLAEEKKSRPKVISISG 103
F ++R+P D + + L +GVL + P+ R I+
Sbjct: 116 REFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREE 165
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 64.5 bits (157), Expect = 7e-15
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 14 KETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR-------GRRTSGTFWMQFRMPMS 66
+ R VI LD+ D+ ++V+E+ V + G+ S F ++R+P +
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGKHNERQDDHGYISREFHRRYRLPSN 66
Query: 67 ADLEHVKA-LLENGVLRITVPKLAEEKKSRPKVISI 101
D + L +G+L + PK+ + +I
Sbjct: 67 VDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAI 102
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 60.9 bits (148), Expect = 2e-13
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 14 KETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR-------GRRTSGTFWMQFRMPMS 66
+ LD+ ++ ++V + + V R + F ++R+P
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHARHEERPDEHGFIAREFHRRYRLPPG 65
Query: 67 ADLEHVKA-LLENGVLRITVPKLAEEKKSRPKVI 99
D V + L GVL I + +
Sbjct: 66 VDPAAVTSALSPEGVLSIQATPASAQASLPSPPA 99
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 60.1 bits (146), Expect = 2e-13
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 14 KETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR-------GRRTSGTFWMQFRMPMS 66
T ++LD+ +++ ++ ++ V ++G+ S F ++ +P
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVE-ITGKHAARQDEHGYISRCFTRKYTLPPG 61
Query: 67 ADLEHVKA-LLENGVLRITVPK 87
D V + L G L + P
Sbjct: 62 VDPTQVSSSLSPEGTLTVEAPM 83
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 60.1 bits (146), Expect = 2e-13
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 14 KETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR-------GRRTSGTFWMQFRMPMS 66
+ + LD+ ++K++V + V+ V G+ S F ++R+P
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVLGD-VIEVHGKHEERQDEHGFISREFHRKYRIPAD 60
Query: 67 ADLEHVKA-LLENGVLRITVPKLAEEKKSR 95
D + + + +GVL + P+ R
Sbjct: 61 VDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 48.7 bits (115), Expect = 7e-08
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 12 DWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSG----------RGRRTSGTFWMQF 61
++ H+ P DVK+ + N+V V G F+ F
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVY-VHGVTGKEEKTENASHSEHREFYKAF 286
Query: 62 RMPMSADLEHVKALLENGVLRITVPKL 88
P D +A + +G++ + P
Sbjct: 287 VTPEVVDASKTQAEIVDGLMVVEAPLF 313
Score = 45.2 bits (106), Expect = 1e-06
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 14 KETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGR------GRRTSGTFWMQFRMPMSA 67
K+ R + ++ K ++ I+ ++N+ L V + S + +P S
Sbjct: 108 KDGRLHFKVYFNVKNFKAEEITIKADKNK-LVVRAQKSVACGDAAMSESVGRSIPLPPSV 166
Query: 68 DLEHVKA-LLENGVLRITVPKLAEEKKSRP 96
D H++A + + VL I P K+
Sbjct: 167 DRNHIQATITTDDVLVIEAPVNEPNYKAIK 196
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 28.3 bits (63), Expect = 0.34
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 10 RADWKETRTAHVITLDIPRMKENDVKIEVEENRV 43
+ DW +T + VITL I +++NDV +E E +
Sbjct: 11 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKEL 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.45
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 41 NRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVP 86
N LR + + SG Q R+P S K N L + P
Sbjct: 390 NLTLR---KAKAPSGLD--QSRIPFSER----KLKFSNRFLPVASP 426
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 27.9 bits (62), Expect = 0.46
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 10 RADWKETRTAHVITLDIPRMKENDVKIEVEENRV 43
R ++ + V+T+ + + +V I+ E +
Sbjct: 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQIL 37
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 28.5 bits (64), Expect = 0.58
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 20 HVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENG 79
+D P + I + + + + + T F L V L++ G
Sbjct: 265 RFCLIDDP----SAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEG 320
Query: 80 VLRITV 85
LR T+
Sbjct: 321 RLRTTL 326
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 28.3 bits (64), Expect = 0.65
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 42 RVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITV 85
RV+ V+ + R + Q +L ++ L+ LRI +
Sbjct: 251 RVIEVAKQKHRRAFGLLKQ---FNIEELHYLGKLVSEDKLRIEI 291
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 27.8 bits (62), Expect = 0.89
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 4 QTLALARADWKETRTAHVITLDIPRMKENDVKIEVEENR-----VLRVSGRGRRTSGTFW 58
T A K+ A +TL P + D + V + + +
Sbjct: 259 STETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYR 318
Query: 59 MQFRMPMSADLEHVKALLENGVLRITV 85
F M L+ + L++ G +R +
Sbjct: 319 WAFFMASGPCLDDIAELVDAGKIRPVI 345
>1slu_A Ecotin; serine protease, inhibitor, complex, metal binding sites,
PR engineering, protease-substrate interactions; 1.80A
{Escherichia coli} SCOP: b.16.1.1 PDB: 1slv_A 1slw_A
1slx_A 1n8o_E 1azz_C* 1ecz_A* 1ecy_A 1xx9_C* 1p0s_E*
1id5_I* 1ezu_A 1xxf_C 1ezs_A 1xxd_C 1ifg_A 1fi8_C
1fi8_D
Length = 142
Score = 27.2 bits (60), Expect = 1.3
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 20 HVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTF 57
VI L P+ E+ +K+E+ + L V R G
Sbjct: 23 QVIQLT-PQEDESTLKVELLIGQTLEVDCNLHRLGGKL 59
>2y6t_E Ecotin, chymotrypsinogen A; hydrolase-inhibitor complex; 2.74A
{Yersinia pseudotuberculosis}
Length = 148
Score = 26.9 bits (59), Expect = 1.4
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 20 HVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQ 60
VI L+ P+ E+ K+E+ + L V G +
Sbjct: 28 QVIFLE-PQKDESRFKVELLIGKTLNVDCNRHMLGGNLETR 67
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1,
putative class I ribonucleotide reductase,
ribonucleotide reductase; HET: MSE PGE PG4; 1.90A
{Bacillus halodurans c-125}
Length = 346
Score = 27.2 bits (61), Expect = 1.6
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 19/75 (25%)
Query: 57 FWMQFRMPMSADLEHVKALLENGVLRITVPKLAEEKKSRPKVISISGFFCTIADEAAGN- 115
FW F + MS D + L E E+++ I G D +
Sbjct: 52 FWTPFEINMSHDAKQFPTLTE------------TEQEA---FKKIIGLL-AFLDSVQTDY 95
Query: 116 --SSGEDIKAAEAEM 128
+ E + +
Sbjct: 96 SMRAAEYLTDSSLAA 110
>3u1j_B Serine protease NS3; serine protease, ER MEM hydrolase-hydrolase
inhibitor complex; 1.80A {Dengue virus 3} PDB: 3u1i_B
Length = 191
Score = 26.8 bits (59), Expect = 1.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 48 GRGRRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPKL 88
G G SG W + + E KA LE GV RI +
Sbjct: 4 GSGGGGSGVLW-----DVPSPPETQKAELEEGVYRIKQQGI 39
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 26.8 bits (60), Expect = 2.1
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 51 RRTSGTFWMQFRMPMSADLEHVKALLENGVLRITVPK 87
Q + E + L+ G + I P
Sbjct: 252 GALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPD 288
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center
for structural genomics, JCSG, protein structure INI
PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima}
SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Length = 378
Score = 25.6 bits (57), Expect = 5.0
Identities = 3/29 (10%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 24 LDIPR-MKENDVKIEVEENRVLRVSGRGR 51
+ + + + ++ +E + ++ SG
Sbjct: 88 QKMVKVLPDEITELSLEGDALVISSGSTV 116
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp,
transferase; HET: DNA; 2.89A {Mycobacterium
tuberculosis} PDB: 3rb9_A*
Length = 408
Score = 25.7 bits (57), Expect = 5.5
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 24 LDIPR-MKENDVKIEVEENRVLRVSGRGR 51
DI R + V + VE NRV G R
Sbjct: 93 SDITRALPNKPVDVHVEGNRVALTCGNAR 121
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase,
epstein-BARR virus, R2 subunit; 1.68A {Human
herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A
4a5i_A 4a5j_A
Length = 324
Score = 25.3 bits (56), Expect = 7.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 57 FWMQFRMPMSADLEHVKALLEN 78
W + ++ D +K L E
Sbjct: 46 RWFAAHIVLTKDCGCLKLLNER 67
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 25.1 bits (55), Expect = 7.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 70 EHVKALLENGVLRITVPK 87
E++K L E G+ R PK
Sbjct: 67 ENIKLLKEIGLHRAFQPK 84
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 25.1 bits (55), Expect = 8.3
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 70 EHVKALLENGVLRITVPK 87
L ++G +R+ P+
Sbjct: 52 AAAGLLRDSGAIRLLQPR 69
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system,
Zn-binding protein, MQSA, YGIU B3022, B3021, stress
response; 2.00A {Escherichia coli k-12}
Length = 101
Score = 24.4 bits (53), Expect = 9.0
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 59 MQFRMPMSADLEHVKALLENGVLRIT 84
M+ R P L VK L+ G +R T
Sbjct: 4 MEKRTP-HTRLSQVKKLVNAGQVRTT 28
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 24.9 bits (55), Expect = 9.4
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 45 RVSGRGRRTSGTFWMQFRM------PMSADLEHVKALLENGVLRITV 85
+S + SG F + + L AL++ G L +
Sbjct: 255 PLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRL 301
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 25.0 bits (55), Expect = 9.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 70 EHVKALLENGVLRITVPK 87
+ +KAL E G R+ P+
Sbjct: 39 DSMKALQETGFFRLLQPE 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.372
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,025,294
Number of extensions: 114353
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 45
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)