RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 039913
         (128 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 82.5 bits (203), Expect = 8e-22
 Identities = 53/108 (49%), Positives = 64/108 (59%), Gaps = 15/108 (13%)

Query: 10  RADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSG--------------RGRRTSG 55
           R DWKET  AHV   D+P +K+ +VK+EVE+  VL VSG              R  R+SG
Sbjct: 44  RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSG 103

Query: 56  TFWMQFRMPMSADLEHVKALLENGVLRITVPKLAEEKKSRPKVISISG 103
            F  +FR+   A +E VKA LENGVL +TVPK AE KK   K I ISG
Sbjct: 104 KFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK-AEVKKPEVKAIQISG 150


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 65.8 bits (160), Expect = 9e-16
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 12  DWKETRTAHVITLDIPRMKENDVKIEVEENRVL--------------RVSGRGRRTSGTF 57
              E      +   +P + + D+ +    + +               R+           
Sbjct: 14  SIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEI 73

Query: 58  WMQFRMPMSADLEHVKALLENGVLRITVPKLAEEKKSRPKVISI 101
           +   ++P +   E+  A  ENGVL + +PK         K I+I
Sbjct: 74  YRTIKLPATVKEENASAKFENGVLSVILPKAESSI---KKGINI 114


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog,
          gst1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 30.3 bits (68), Expect = 0.019
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 10 RADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADL 69
          + DW +T +  VITL I  +++NDV +E  E  +   +     +   + ++  +      
Sbjct: 4  KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELS--ALVKLPSGEDYNLKLELLHPIIP 61

Query: 70 EHVKALLENGVLRITVPKLAEEK 92
          E     + +  + I + K    +
Sbjct: 62 EQSTFKVLSTKIEIKLKKPEAVR 84


>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 110

 Score = 27.7 bits (61), Expect = 0.25
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 9  ARADWKETRTAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSAD 68
          A A W + R    + ++       DV +  E+++ L  S  G   +     +  +    D
Sbjct: 4  ASAKWYDRRD--YVFIEFCVEDSKDVNVNFEKSK-LTFSCLGGSDNFKHLNEIDLFHCID 60

Query: 69 LEHVKALLENGVLRITVPKLAEEK 92
              K    +  +   + K    +
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQ 84


>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 283

 Score = 25.9 bits (56), Expect = 1.8
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 12/72 (16%)

Query: 57  FWMQFRMPMSADLEHVKALLENGVLRITVPKLAEEKKSRPKVISISGFFCTIADEAAGNS 116
           FW+  ++P+S D+   + L               E++   +V +      TI + A   S
Sbjct: 25  FWLPEKVPLSNDIPAWQTLSA------------AEQQLTIRVFTGLTLLDTIQNIAGAPS 72

Query: 117 SGEDIKAAEAEM 128
              D      E 
Sbjct: 73  LMADAITPHEEA 84


>d2i9ia1 c.51.6.1 (A:51-271) Hypothetical protein HP0492
           {Helicobacter pylori [TaxId: 210]}
          Length = 221

 Score = 24.1 bits (52), Expect = 5.3
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 33  DVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEH 71
           D+K+ +++     +     ++SG+ W  F  P S  + H
Sbjct: 102 DLKMNLKDPNNPNLDTLVDQSSGSVWFNFYEPESNRVVH 140


>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK
          {Escherichia coli [TaxId: 562]}
          Length = 179

 Score = 24.1 bits (51), Expect = 6.1
 Identities = 11/54 (20%), Positives = 18/54 (33%)

Query: 21 VITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSADLEHVKA 74
           + +       NDVKIE+    V        R+     +   +P    +  V A
Sbjct: 15 PMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVA 68


>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP
          {Bacillus subtilis [TaxId: 1423]}
          Length = 162

 Score = 23.7 bits (50), Expect = 7.6
 Identities = 8/48 (16%), Positives = 21/48 (43%)

Query: 18 TAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPM 65
          + HV T+    + ++ V I+V  + +    G   +  G    ++ + +
Sbjct: 17 SVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLIL 64


>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia
          coli [TaxId: 562]}
          Length = 339

 Score = 23.6 bits (50), Expect = 8.9
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 55 GTFWMQFRMPMSADLEHVKALLEN 78
            FW    + +S D    +AL E+
Sbjct: 45 SFFWRPEEVDVSRDRIDYQALPEH 68


>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 152

 Score = 23.3 bits (49), Expect = 9.2
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 18 TAHVITLDIPRMKENDVKIEVEENRVLRVSGRGRRTSGTFWMQFRMPMSAD 68
          TA V T+ +  + E DV + V  + V    G      G     +      D
Sbjct: 17 TAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGID 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 468,632
Number of extensions: 19813
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 16
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)