Query 039915
Match_columns 127
No_of_seqs 55 out of 57
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 99.9 1.7E-24 3.7E-29 161.9 8.3 112 1-124 1-115 (118)
2 PF05617 Prolamin_like: Prolam 99.8 6.5E-20 1.4E-24 120.7 3.9 64 52-116 1-70 (70)
3 PF07172 GRP: Glycine rich pro 96.0 0.0048 1E-07 44.4 2.3 27 1-27 1-28 (95)
4 PLN00214 putative protein; Pro 66.5 5.6 0.00012 30.3 2.5 31 61-92 45-76 (115)
5 PF03058 Sar8_2: Sar8.2 family 52.8 11 0.00024 27.8 2.0 28 1-28 1-30 (93)
6 PF09585 Lin0512_fam: Conserve 44.1 15 0.00033 27.6 1.7 34 72-106 13-47 (113)
7 cd04660 nsLTP_like nsLTP_like: 37.0 17 0.00037 24.0 0.9 32 57-92 5-39 (73)
8 PF15284 PAGK: Phage-encoded v 29.6 51 0.0011 22.7 2.2 16 3-18 4-19 (61)
9 smart00499 AAI Plant lipid tra 25.7 39 0.00085 20.7 1.1 17 76-92 22-40 (79)
10 KOG0856 Predicted pilin-like t 23.3 37 0.00081 26.9 0.8 38 64-102 43-85 (146)
11 PF15240 Pro-rich: Proline-ric 22.1 68 0.0015 26.0 2.0 13 9-21 3-15 (179)
12 PF08109 Antimicrobial14: Lact 21.9 55 0.0012 19.7 1.1 25 102-126 4-28 (31)
13 PF07064 RIC1: RIC1; InterPro 21.6 36 0.00077 28.2 0.4 20 85-106 164-183 (258)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.91 E-value=1.7e-24 Score=161.93 Aligned_cols=112 Identities=21% Similarity=0.390 Sum_probs=82.4
Q ss_pred CcchhHHHHHHHHHHHHHHhhhccC-ccccCCCCCCCcchHHHHhhccCChhhhhHhhhcccchHHHHHHHHHhCccc-c
Q 039915 1 MALKNVCLVLVVTLCLLAYASTATR-TSYDHKVNTPGYDLAARLQAYQGQFMECWNSLQALSSCSSLTVQFFLTGKAD-I 78 (127)
Q Consensus 1 MA~~~~~l~~~~tl~ll~~~~~a~r-~~~~~~~~~~~~~l~~rL~~~~~~~~~CW~sL~~l~sCt~EIv~fflnGe~~-i 78 (127)
|..|+++.+++++- ++.++..+ +...++...+.. . .++.+ -.|..+||+||++++||..||.+++++||++ |
T Consensus 1 m~iknV~~ll~v~c---IvvsVna~lpqf~~~fp~~~p-~-~~~pg-~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~I 74 (118)
T PLN00213 1 MSIKNVFLLLAVLC---IIVSVNAQLPQFPAQLPFLFP-F-QLIPG-LPDITKCFSSVMDIPGCIAEISQSIFTGKFGNL 74 (118)
T ss_pred CchHHHHHHHHHHH---HHheeccCCCCCCCCCCCCCC-c-cCCCC-CccHHHHHHHHcCCcchHHHHHHHHHhchhccc
Confidence 78899877766542 23333333 222223321111 1 33443 3589999999999999999999999999996 9
Q ss_pred h-hhhHHHHHhhhcCCCchhhhcCCCCchhhhHHHhhhhccCCCCCC
Q 039915 79 A-SCCGSIDIIWSKCSWPSAVISLGYTPAEANILKTYCDAVSAPPAN 124 (127)
Q Consensus 79 G-~CC~AI~~I~~~C~WP~M~~slgfT~eE~~iLkgyCd~~a~~pa~ 124 (127)
| +||+||...+ +| ||+| |.++|+|. +||+.|.+.+.+++.
T Consensus 75 g~aCCKAf~~~d-nC-wP~~-P~~P~fPp---~LK~~Cs~i~~~~~~ 115 (118)
T PLN00213 75 GPACCKAFLDAD-NC-IPKI-PFIPFFPP---MLKEQCSRVAGATPP 115 (118)
T ss_pred chHHHHHHHhhh-cc-ccCC-cCCCccch---HHHHHHhcccCCCCC
Confidence 9 9999999966 99 9995 99999885 999999998666553
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.79 E-value=6.5e-20 Score=120.75 Aligned_cols=64 Identities=23% Similarity=0.546 Sum_probs=59.6
Q ss_pred hhhHhhhcccchHHHHHHHHHhCc-ccch-hhhHHHHHhhhcCCCchhhhcCCCCchhhh----HHHhhhh
Q 039915 52 ECWNSLQALSSCSSLTVQFFLTGK-ADIA-SCCGSIDIIWSKCSWPSAVISLGYTPAEAN----ILKTYCD 116 (127)
Q Consensus 52 ~CW~sL~~l~sCt~EIv~fflnGe-~~iG-~CC~AI~~I~~~C~WP~M~~slgfT~eE~~----iLkgyCd 116 (127)
+||+++.++++|+.||+.+|++|+ ..|| +||++|+.++++| ||.|+..++++|++.+ .|+++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C-~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDC-HPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhH-HHHHHHHccCCCCccchhHHHHHhhcC
Confidence 699999999999999999999999 6799 9999999999999 9997777778888888 9999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=96.01 E-value=0.0048 Score=44.42 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=20.2
Q ss_pred CcchhHHH-HHHHHHHHHHHhhhccCcc
Q 039915 1 MALKNVCL-VLVVTLCLLAYASTATRTS 27 (127)
Q Consensus 1 MA~~~~~l-~~~~tl~ll~~~~~a~r~~ 27 (127)
||||..+| .++|+++|||+|.++.|++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 99887443 3446677888898888887
No 4
>PLN00214 putative protein; Provisional
Probab=66.53 E-value=5.6 Score=30.29 Aligned_cols=31 Identities=19% Similarity=0.501 Sum_probs=26.8
Q ss_pred cchHHHHHHHHH-hCcccchhhhHHHHHhhhcC
Q 039915 61 SSCSSLTVQFFL-TGKADIASCCGSIDIIWSKC 92 (127)
Q Consensus 61 ~sCt~EIv~ffl-nGe~~iG~CC~AI~~I~~~C 92 (127)
.-|..||+..++ ||.. ...||+-|-..+++|
T Consensus 45 ~KCa~EI~a~i~~N~t~-s~~CC~~LVk~GK~C 76 (115)
T PLN00214 45 PKCALDIIAVVFENGTL-IDPCCNDLVKEGKVC 76 (115)
T ss_pred HhhHHHHHHHHHcCCCC-chHHHHHHHHHhhHH
Confidence 449999999988 5555 669999999999999
No 5
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=52.76 E-value=11 Score=27.82 Aligned_cols=28 Identities=21% Similarity=0.295 Sum_probs=18.6
Q ss_pred Ccchh-HHHHHHHHHHHH-HHhhhccCccc
Q 039915 1 MALKN-VCLVLVVTLCLL-AYASTATRTSY 28 (127)
Q Consensus 1 MA~~~-~~l~~~~tl~ll-~~~~~a~r~~~ 28 (127)
|++|+ +||-++|+++|+ +++-+.+|+..
T Consensus 1 M~~Ktnlfl~lSLailLmIISSqv~AREms 30 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLMIISSQVDAREMS 30 (93)
T ss_pred CcchhhhHHHHHHHHHHHHHhhHHHHHHHh
Confidence 88776 666666755555 46677788773
No 6
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=44.11 E-value=15 Score=27.63 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=26.6
Q ss_pred HhCcccchhhhHHHH-HhhhcCCCchhhhcCCCCch
Q 039915 72 LTGKADIASCCGSID-IIWSKCSWPSAVISLGYTPA 106 (127)
Q Consensus 72 lnGe~~iG~CC~AI~-~I~~~C~WP~M~~slgfT~e 106 (127)
+.||=|-.++++|++ .|.|+| =|.|+..+|+..+
T Consensus 13 lhGqD~TkAA~RAv~DAI~~ns-lp~l~~~~~~~~~ 47 (113)
T PF09585_consen 13 LHGQDYTKAAVRAVRDAISHNS-LPGLFEILGLDLD 47 (113)
T ss_pred ccCCcHHHHHHHHHHHHHhhcc-hHHHHHHcCCChH
Confidence 346644458899984 799999 9999999999554
No 7
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=36.96 E-value=17 Score=24.02 Aligned_cols=32 Identities=19% Similarity=0.510 Sum_probs=20.3
Q ss_pred hhcccchHHHHHHHHHhCc--ccch-hhhHHHHHhhhcC
Q 039915 57 LQALSSCSSLTVQFFLTGK--ADIA-SCCGSIDIIWSKC 92 (127)
Q Consensus 57 L~~l~sCt~EIv~fflnGe--~~iG-~CC~AI~~I~~~C 92 (127)
+..|..|.. |+..|. ..-. +||.+|+..+..|
T Consensus 5 ~~~L~~C~~----yl~~~~~~~~Ps~~CC~~vk~~~~~C 39 (73)
T cd04660 5 LDLLAECQP----YVTGPNPPPPPSRECCAALRRADLPC 39 (73)
T ss_pred HHHHHHHHH----HHcCCCCCCCCCHHHHHHHHcCCcCC
Confidence 344555543 333344 2356 9999999988778
No 8
>PF15284 PAGK: Phage-encoded virulence factor
Probab=29.65 E-value=51 Score=22.68 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=11.7
Q ss_pred chhHHHHHHHHHHHHH
Q 039915 3 LKNVCLVLVVTLCLLA 18 (127)
Q Consensus 3 ~~~~~l~~~~tl~ll~ 18 (127)
.|++||.++++|.+..
T Consensus 4 ~ksifL~l~~~LsA~~ 19 (61)
T PF15284_consen 4 FKSIFLALVFILSAAG 19 (61)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5788888887775554
No 9
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=25.70 E-value=39 Score=20.70 Aligned_cols=17 Identities=24% Similarity=0.698 Sum_probs=14.2
Q ss_pred ccch-hhhHHHHHh-hhcC
Q 039915 76 ADIA-SCCGSIDII-WSKC 92 (127)
Q Consensus 76 ~~iG-~CC~AI~~I-~~~C 92 (127)
.... .||..++.+ ...|
T Consensus 22 ~~p~~~CC~~l~~~~~~~C 40 (79)
T smart00499 22 APPSQQCCSQLRGLNSAQC 40 (79)
T ss_pred CCCchHHHHHHHHhcccCC
Confidence 3455 999999999 8888
No 10
>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=37 Score=26.86 Aligned_cols=38 Identities=26% Similarity=0.564 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCcccchhhhH-----HHHHhhhcCCCchhhhcCC
Q 039915 64 SSLTVQFFLTGKADIASCCG-----SIDIIWSKCSWPSAVISLG 102 (127)
Q Consensus 64 t~EIv~fflnGe~~iG~CC~-----AI~~I~~~C~WP~M~~slg 102 (127)
++|..++|-.| +|.=.||. +=...+..|+||+.|..+|
T Consensus 43 tGey~~~~e~G-vY~C~~C~~pLykS~tKfdsgcGWPAF~e~i~ 85 (146)
T KOG0856|consen 43 TGEYTKHFEEG-VYVCAGCGTPLYKSTTKFDSGCGWPAFFEAIG 85 (146)
T ss_pred CcccccccCCc-eEEEeecCCccccccccccCCCCCchhhhccC
Confidence 45555555222 12226664 3457889999999999885
No 11
>PF15240 Pro-rich: Proline-rich
Probab=22.11 E-value=68 Score=25.99 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHhh
Q 039915 9 VLVVTLCLLAYAS 21 (127)
Q Consensus 9 ~~~~tl~ll~~~~ 21 (127)
+|+||..||+-||
T Consensus 3 lVLLSvALLALSS 15 (179)
T PF15240_consen 3 LVLLSVALLALSS 15 (179)
T ss_pred hHHHHHHHHHhhh
Confidence 3334333344333
No 12
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=21.86 E-value=55 Score=19.68 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=17.8
Q ss_pred CCCchhhhHHHhhhhccCCCCCCCC
Q 039915 102 GYTPAEANILKTYCDAVSAPPANRK 126 (127)
Q Consensus 102 gfT~eE~~iLkgyCd~~a~~pa~~~ 126 (127)
||----+|+||||-....++--|.|
T Consensus 4 gyiqgipdflkgylhgisaankhkk 28 (31)
T PF08109_consen 4 GYIQGIPDFLKGYLHGISAANKHKK 28 (31)
T ss_pred ccccccHHHHHHHHhhhhhhccccc
Confidence 3433446899999988877766655
No 13
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=21.56 E-value=36 Score=28.16 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.2
Q ss_pred HHHhhhcCCCchhhhcCCCCch
Q 039915 85 IDIIWSKCSWPSAVISLGYTPA 106 (127)
Q Consensus 85 I~~I~~~C~WP~M~~slgfT~e 106 (127)
.|.|+-.- ||.+|+.+| +|.
T Consensus 164 ~RKtE~~~-W~~LF~~lg-~P~ 183 (258)
T PF07064_consen 164 ARKTEVRY-WPYLFDYLG-SPR 183 (258)
T ss_pred HHhhHHHH-HHHHHHhcC-CHH
Confidence 68888899 999999999 886
Done!