Query 039915
Match_columns 127
No_of_seqs 55 out of 57
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 04:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c8l_A FTSZ-like protein of un 37.6 14 0.00049 27.1 1.7 31 73-104 18-49 (122)
2 3idw_A Actin cytoskeleton-regu 13.3 64 0.0022 21.7 1.0 42 68-112 6-56 (72)
3 4ank_A Transthyretin; hormone 13.2 41 0.0014 25.0 -0.0 17 1-17 1-17 (147)
4 1bwo_A NS-LTP1, nonspecific li 8.8 2.5E+02 0.0086 18.3 2.7 60 53-118 3-76 (90)
5 2knp_A Mcocc-1; disulfide-rich 8.4 44 0.0015 19.5 -1.0 11 91-102 18-28 (33)
6 2gmf_A Granulocyte-macrophage 7.9 99 0.0034 22.9 0.4 29 37-68 53-81 (127)
7 2ljo_A Non-specific lipid-tran 7.4 2.5E+02 0.0086 18.7 2.3 32 53-89 4-36 (93)
8 1fex_A TRF2-interacting telome 7.2 2.7E+02 0.0093 17.1 2.2 19 101-119 3-21 (59)
9 1g0y_I Antagonist peptide AF10 7.2 1.2E+02 0.0043 16.7 0.5 10 101-110 2-11 (26)
10 2alg_A Non-specific lipid tran 7.1 2.5E+02 0.0084 18.4 2.1 60 53-118 4-77 (92)
No 1
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=37.59 E-value=14 Score=27.11 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=24.4
Q ss_pred hCcccchhhhHHHH-HhhhcCCCchhhhcCCCC
Q 039915 73 TGKADIASCCGSID-IIWSKCSWPSAVISLGYT 104 (127)
Q Consensus 73 nGe~~iG~CC~AI~-~I~~~C~WP~M~~slgfT 104 (127)
.||=|-.++.+|++ .|.||| -|.++..+|++
T Consensus 18 hGqD~TkAA~RAvrDAI~~ns-lp~~~~~~g~~ 49 (122)
T 3c8l_A 18 HGQEPTIAASRAVRNAIAHNA-LPGVWEVAGLS 49 (122)
T ss_dssp SSSCHHHHHHHHHHHHHTTCC-CSSHHHHHTCS
T ss_pred cCccHHHHHHHHHHHHHhhhc-chhHHHHCCCC
Confidence 35544447788875 799999 99999999995
No 2
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=13.29 E-value=64 Score=21.74 Aligned_cols=42 Identities=29% Similarity=0.613 Sum_probs=25.5
Q ss_pred HHHHHhCcccchhhhH-HHHH----hhhcCCCc----hhhhcCCCCchhhhHHH
Q 039915 68 VQFFLTGKADIASCCG-SIDI----IWSKCSWP----SAVISLGYTPAEANILK 112 (127)
Q Consensus 68 v~fflnGe~~iG~CC~-AI~~----I~~~C~WP----~M~~slgfT~eE~~iLk 112 (127)
+.||++--...+.|=+ |+.- |+.+. =| .++-.+|++ ||||+|
T Consensus 6 f~FFl~aGv~~~~c~rYA~~F~~~ri~e~m-L~Dl~~~~Lr~LGi~--eGDIIr 56 (72)
T 3idw_A 6 FEFFLNCGVDVSNCQRYTINFDREQLTEDM-MPDINNSMLRTLGLR--EGDIVR 56 (72)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCGGG-GGGCCHHHHHHTTCC--HHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHccCCHHH-HhhCCHHHHHHcCCc--hhhHHH
Confidence 5788887666654433 2222 23333 33 556678997 799987
No 3
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=13.16 E-value=41 Score=24.95 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHH
Q 039915 1 MALKNVCLVLVVTLCLL 17 (127)
Q Consensus 1 MA~~~~~l~~~~tl~ll 17 (127)
||+.+++|+.+..++++
T Consensus 1 m~~~~~~l~~la~l~~~ 17 (147)
T 4ank_A 1 MASHRLLLLCLAGLVFV 17 (147)
T ss_dssp -----------------
T ss_pred CchHHHHHHHHHHHHhh
Confidence 88888887766555333
No 4
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=8.79 E-value=2.5e+02 Score=18.33 Aligned_cols=60 Identities=15% Similarity=0.435 Sum_probs=36.4
Q ss_pred hhHhhhcccchHHHHHHHHHhCcccch-hhhHHHHHhhh------------cCCCchhhhcC-CCCchhhhHHHhhhhcc
Q 039915 53 CWNSLQALSSCSSLTVQFFLTGKADIA-SCCGSIDIIWS------------KCSWPSAVISL-GYTPAEANILKTYCDAV 118 (127)
Q Consensus 53 CW~sL~~l~sCt~EIv~fflnGe~~iG-~CC~AI~~I~~------------~C~WP~M~~sl-gfT~eE~~iLkgyCd~~ 118 (127)
|=..+..|..|.. |+.|..... +||.+++.+.+ .| --....++ |+.+.-+.-|-+-|.-.
T Consensus 3 C~~v~~~L~pCl~-----y~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClC-lk~~~~~~~~in~~~A~~LP~~C~v~ 76 (90)
T 1bwo_A 3 CGHVDSLVRPCLS-----YVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNC-LKGIARGIHNLNEDNARSIPPKCGVN 76 (90)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHH-HHHHHTTCTTCCHHHHHTHHHHHTCC
T ss_pred HHHHHHhhcccHH-----HHcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcC-ccCchhccCCcCHHHHHHHHHHcCCC
Confidence 4455556666644 444444456 99999998763 44 22223344 56777677777778654
No 5
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=8.39 E-value=44 Score=19.47 Aligned_cols=11 Identities=36% Similarity=1.325 Sum_probs=8.2
Q ss_pred cCCCchhhhcCC
Q 039915 91 KCSWPSAVISLG 102 (127)
Q Consensus 91 ~C~WP~M~~slg 102 (127)
+| ||..-|-+|
T Consensus 18 rc-wptvtpgvg 28 (33)
T 2knp_A 18 RC-WPTVTPGVG 28 (33)
T ss_dssp CE-EECSSTTEE
T ss_pred ee-ccccCCCee
Confidence 68 998777555
No 6
>2gmf_A Granulocyte-macrophage colony-stimulating factor; granulocyte-macrophage colony stimulating growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 1csg_A 3cxe_B*
Probab=7.92 E-value=99 Score=22.91 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=21.7
Q ss_pred cchHHHHhhccCChhhhhHhhhcccchHHHHH
Q 039915 37 YDLAARLQAYQGQFMECWNSLQALSSCSSLTV 68 (127)
Q Consensus 37 ~~l~~rL~~~~~~~~~CW~sL~~l~sCt~EIv 68 (127)
+=|..||++++.++ +.||+.++|=-.-+.
T Consensus 53 TClQtRL~LY~qGL---rGslt~Lkg~LtmmA 81 (127)
T 2gmf_A 53 TCLQTRLELYKQGL---RGSLTKLKGPLTMMA 81 (127)
T ss_dssp CSHHHHHHHHHHTC---CGGGGGGHHHHHHHH
T ss_pred cHHHHHHHHHHhhc---cchHHHhccHHHHHH
Confidence 46999999987776 788888887544433
No 7
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=7.39 E-value=2.5e+02 Score=18.67 Aligned_cols=32 Identities=31% Similarity=0.713 Sum_probs=20.4
Q ss_pred hhHhhhcccchHHHHHHHHHhCcccch-hhhHHHHHhh
Q 039915 53 CWNSLQALSSCSSLTVQFFLTGKADIA-SCCGSIDIIW 89 (127)
Q Consensus 53 CW~sL~~l~sCt~EIv~fflnGe~~iG-~CC~AI~~I~ 89 (127)
|=+.+..+-.|. .|+.|..... +||..++.+.
T Consensus 4 C~~v~~~L~pCl-----~Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 4 CGAVTSDLSPCL-----TYLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp SHHHHHHHHHHH-----HHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH-----HHHcCCCCCCCchhhHHHHHH
Confidence 444445555553 3556655566 9999999885
No 8
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=7.18 E-value=2.7e+02 Score=17.07 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=14.5
Q ss_pred CCCCchhhhHHHhhhhccC
Q 039915 101 LGYTPAEANILKTYCDAVS 119 (127)
Q Consensus 101 lgfT~eE~~iLkgyCd~~a 119 (127)
.+||+||-.+|-.|=..-.
T Consensus 3 ~~FT~edD~~L~~~v~~~~ 21 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENA 21 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 5799999999887765443
No 9
>1g0y_I Antagonist peptide AF10847; immunoglobulin, immune system; 3.00A {Homo sapiens} SCOP: k.19.1.1
Probab=7.17 E-value=1.2e+02 Score=16.71 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=7.2
Q ss_pred CCCCchhhhH
Q 039915 101 LGYTPAEANI 110 (127)
Q Consensus 101 lgfT~eE~~i 110 (127)
-|||+||.+-
T Consensus 2 tpftweesna 11 (26)
T 1g0y_I 2 TPFTWEESNA 11 (26)
T ss_dssp CCCCHHHHHH
T ss_pred Cccceecccc
Confidence 3799988653
No 10
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=7.11 E-value=2.5e+02 Score=18.39 Aligned_cols=60 Identities=23% Similarity=0.568 Sum_probs=36.9
Q ss_pred hhHhhhcccchHHHHHHHHHhCcccch-hhhHHHHHhh-------h-----cCCCchhhhcC-CCCchhhhHHHhhhhcc
Q 039915 53 CWNSLQALSSCSSLTVQFFLTGKADIA-SCCGSIDIIW-------S-----KCSWPSAVISL-GYTPAEANILKTYCDAV 118 (127)
Q Consensus 53 CW~sL~~l~sCt~EIv~fflnGe~~iG-~CC~AI~~I~-------~-----~C~WP~M~~sl-gfT~eE~~iLkgyCd~~ 118 (127)
|=..+..|..|.. |++|....- +||.+++.+. + .| ==...+++ |+.+.-+.-|-+-|.-.
T Consensus 4 C~~v~~~L~pCl~-----y~~~~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC-~~~~~~~~~~in~~~A~~LP~~Cgv~ 77 (92)
T 2alg_A 4 CGQVSSSLAPCIP-----YVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNC-LKQLSASVPGVNPNNAAALPGKCGVS 77 (92)
T ss_dssp HHHHHHHHGGGHH-----HHHHCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHH-HHHHHHHSTTCCHHHHHHHHHHTTCC
T ss_pred hHHHHHhccCcHH-----HHcCCCCCCHHHHHHHHHHHhhhcccCCCCcCCcc-ccCcccccCccChHHHHHHHHHcCCC
Confidence 5555666667754 333333444 9999999975 3 34 11233445 67777777788888654
Done!