Query 039915
Match_columns 127
No_of_seqs 55 out of 57
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 04:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039915.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039915hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 27.3 26 0.0019 21.8 3.2 61 53-118 4-78 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 20.4 43 0.0031 20.7 3.2 33 53-90 3-36 (91)
3 d3bofa2 c.1.26.1 (A:1-300) Cob 13.2 28 0.0021 24.7 1.0 16 68-83 259-274 (300)
4 d1lt7a_ c.1.26.1 (A:) Betaine- 12.1 31 0.0023 25.5 0.9 21 72-92 280-304 (361)
5 d2q22a1 d.365.1.1 (A:8-138) Un 11.4 35 0.0026 23.2 0.9 25 83-110 59-83 (131)
6 d2gmfa_ a.26.1.2 (A:) Granuloc 8.2 44 0.0032 22.8 0.4 28 37-67 50-77 (121)
7 d1gv2a2 a.4.1.3 (A:144-190) c- 6.8 81 0.0059 17.1 1.1 15 102-116 3-17 (47)
8 d1fexa_ a.4.1.3 (A:) Rap1 {Hum 6.8 1.4E+02 0.0099 17.4 2.2 22 101-122 3-24 (59)
9 d1vhka2 c.116.1.5 (A:74-253) H 5.4 99 0.0072 20.7 1.1 18 97-114 130-147 (180)
10 d1gvda_ a.4.1.3 (A:) c-Myb, DN 4.9 1.1E+02 0.008 16.8 0.9 11 102-112 5-15 (52)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=27.32 E-value=26 Score=21.81 Aligned_cols=61 Identities=18% Similarity=0.482 Sum_probs=34.3
Q ss_pred hhHhhhcccchHHHHHHHHHhCccc-ch-hhhHHHHHhhh----------cCC-Cchhhh-cCCCCchhhhHHHhhhhcc
Q 039915 53 CWNSLQALSSCSSLTVQFFLTGKAD-IA-SCCGSIDIIWS----------KCS-WPSAVI-SLGYTPAEANILKTYCDAV 118 (127)
Q Consensus 53 CW~sL~~l~sCt~EIv~fflnGe~~-iG-~CC~AI~~I~~----------~C~-WP~M~~-slgfT~eE~~iLkgyCd~~ 118 (127)
|=+.+..+-.|. .|++|... -. .||.+++.+.+ -|. =-.... ..|+.+.-+.-|=+-|.-.
T Consensus 4 C~~v~~~l~pCl-----~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 78 (93)
T d1fk5a_ 4 CGQVASAIAPCI-----SYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp HHHHHHHHGGGH-----HHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhhH-----HHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCC
Confidence 445555555553 36677655 55 99999998863 130 101111 1356666666677777543
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=20.42 E-value=43 Score=20.69 Aligned_cols=33 Identities=15% Similarity=0.513 Sum_probs=22.4
Q ss_pred hhHhhhcccchHHHHHHHHHhCcccch-hhhHHHHHhhh
Q 039915 53 CWNSLQALSSCSSLTVQFFLTGKADIA-SCCGSIDIIWS 90 (127)
Q Consensus 53 CW~sL~~l~sCt~EIv~fflnGe~~iG-~CC~AI~~I~~ 90 (127)
|=+.+..+-.|. .|++|..... .||.+++.+..
T Consensus 3 C~~v~~~l~pCl-----~Yl~g~~~P~~~CC~gv~~L~~ 36 (91)
T d1mida_ 3 CGQVDSKMKPCL-----TYVQGGPGPSGECCNGVRDLHN 36 (91)
T ss_dssp HHHHHHHHGGGH-----HHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH-----HHHcCCCCCCcchhhhHHHHHH
Confidence 445555555664 3667766666 99999988863
No 3
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=13.24 E-value=28 Score=24.67 Aligned_cols=16 Identities=25% Similarity=0.744 Sum_probs=10.8
Q ss_pred HHHHHhCcccchhhhH
Q 039915 68 VQFFLTGKADIASCCG 83 (127)
Q Consensus 68 v~fflnGe~~iG~CC~ 83 (127)
-..+-+|=..|||||.
T Consensus 259 ~~w~~~Ga~iIGGCCg 274 (300)
T d3bofa2 259 DSYYELGVNIFGGCCG 274 (300)
T ss_dssp HHHHHTTCSEECCCTT
T ss_pred HHHHHCCCCEEEEcCC
Confidence 3455667445899995
No 4
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.06 E-value=31 Score=25.51 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=13.5
Q ss_pred HhCcccchhhhH----HHHHhhhcC
Q 039915 72 LTGKADIASCCG----SIDIIWSKC 92 (127)
Q Consensus 72 lnGe~~iG~CC~----AI~~I~~~C 92 (127)
-.|=..|||||. -|+.|.+..
T Consensus 280 ~~Ga~iIGGCCGttP~HI~~la~~l 304 (361)
T d1lt7a_ 280 NLGVRYIGGCCGFEPYHIRAIAEEL 304 (361)
T ss_dssp HHTCCEECCCTTCCHHHHHHHHHHT
T ss_pred HCCCcEEEECCCCCHHHHHHHHHHH
Confidence 345445999996 366666554
No 5
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}
Probab=11.36 E-value=35 Score=23.23 Aligned_cols=25 Identities=4% Similarity=0.006 Sum_probs=17.9
Q ss_pred HHHHHhhhcCCCchhhhcCCCCchhhhH
Q 039915 83 GSIDIIWSKCSWPSAVISLGYTPAEANI 110 (127)
Q Consensus 83 ~AI~~I~~~C~WP~M~~slgfT~eE~~i 110 (127)
.|++.|.+..+||.++. +++.|+++
T Consensus 59 ~ALrs~~~~~~~~~~~d---~~~~~G~V 83 (131)
T d2q22a1 59 LAMKTYSHALGYEVPID---LPVVEGPV 83 (131)
T ss_dssp HHHHHHHHHTTCCCC-C---CCCCSSSE
T ss_pred HHHHHHHHHhCCCccCC---CCCCCCcE
Confidence 47888999999998866 45555553
No 6
>d2gmfa_ a.26.1.2 (A:) Granulocyte-macrophage colony-stimulating factor (GM-CSF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.20 E-value=44 Score=22.84 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=20.9
Q ss_pred cchHHHHhhccCChhhhhHhhhcccchHHHH
Q 039915 37 YDLAARLQAYQGQFMECWNSLQALSSCSSLT 67 (127)
Q Consensus 37 ~~l~~rL~~~~~~~~~CW~sL~~l~sCt~EI 67 (127)
+=|..||++++.++ +.||+.++|=-.-+
T Consensus 50 TClQtRL~LYkqGL---rGslt~L~g~Ltmm 77 (121)
T d2gmfa_ 50 TCLQTRLELYKQGL---RGSLTKLKGPLTMM 77 (121)
T ss_dssp CSHHHHHHHHHHTC---CGGGGGGHHHHHHH
T ss_pred cHHHHHHHHHHhhc---cccHHHhccHHHHH
Confidence 46999999987666 67888888754433
No 7
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.79 E-value=81 Score=17.15 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=11.7
Q ss_pred CCCchhhhHHHhhhh
Q 039915 102 GYTPAEANILKTYCD 116 (127)
Q Consensus 102 gfT~eE~~iLkgyCd 116 (127)
+||+||-++|...-.
T Consensus 3 ~WT~eED~~L~~~v~ 17 (47)
T d1gv2a2 3 SWTEEEDRIIYQAHK 17 (47)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 689999998876543
No 8
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.78 E-value=1.4e+02 Score=17.37 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=15.5
Q ss_pred CCCCchhhhHHHhhhhccCCCC
Q 039915 101 LGYTPAEANILKTYCDAVSAPP 122 (127)
Q Consensus 101 lgfT~eE~~iLkgyCd~~a~~p 122 (127)
.+||.||-.+|=.|=..-...|
T Consensus 3 ~~fT~eeD~~l~~yv~~~~~~~ 24 (59)
T d1fexa_ 3 IAFTDADDVAILTYVKENARSP 24 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCST
T ss_pred CCCCHHHHHHHHHHHHHhccCc
Confidence 5799999888877765543333
No 9
>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}
Probab=5.44 E-value=99 Score=20.67 Aligned_cols=18 Identities=28% Similarity=0.060 Sum_probs=14.8
Q ss_pred hhhcCCCCchhhhHHHhh
Q 039915 97 AVISLGYTPAEANILKTY 114 (127)
Q Consensus 97 M~~slgfT~eE~~iLkgy 114 (127)
.-|-=||+++|-+.|+.+
T Consensus 130 IGPEGGfs~~E~~~l~~~ 147 (180)
T d1vhka2 130 FGPEGGLTEAEVERLTEQ 147 (180)
T ss_dssp ECCTTCCCHHHHHHHHHT
T ss_pred ecCCCCCCHHHHHHHHHC
Confidence 457779999999999864
No 10
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.94 E-value=1.1e+02 Score=16.80 Aligned_cols=11 Identities=27% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCCchhhhHHH
Q 039915 102 GYTPAEANILK 112 (127)
Q Consensus 102 gfT~eE~~iLk 112 (127)
+||+||-+.|+
T Consensus 5 ~WT~eED~~L~ 15 (52)
T d1gvda_ 5 PWTKEEDQRLI 15 (52)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Done!