Query 039918
Match_columns 140
No_of_seqs 136 out of 693
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4005 Transcription factor X 99.5 2.2E-13 4.8E-18 112.1 13.6 83 49-131 65-147 (292)
2 smart00338 BRLZ basic region l 99.5 5.4E-13 1.2E-17 88.5 9.5 62 50-111 2-63 (65)
3 PF00170 bZIP_1: bZIP transcri 99.4 1.2E-12 2.7E-17 86.6 9.3 63 50-112 2-64 (64)
4 KOG4343 bZIP transcription fac 99.4 2.7E-12 5.8E-17 114.9 8.7 66 50-115 278-343 (655)
5 KOG3584 cAMP response element 99.2 3.3E-11 7.2E-16 101.5 8.1 55 50-104 288-342 (348)
6 PF07716 bZIP_2: Basic region 99.2 2.2E-10 4.8E-15 73.8 8.6 52 50-102 2-53 (54)
7 KOG0709 CREB/ATF family transc 99.0 1.1E-09 2.5E-14 96.6 6.4 69 52-127 250-318 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.1 2.3E-08 5E-13 70.7 -6.6 52 52-103 29-80 (92)
9 KOG0837 Transcriptional activa 97.9 7E-05 1.5E-09 62.7 8.2 50 55-104 208-257 (279)
10 KOG4196 bZIP transcription fac 97.8 0.00046 1E-08 52.5 10.9 72 53-138 53-124 (135)
11 KOG4571 Activating transcripti 97.5 0.001 2.2E-08 56.5 10.3 50 50-99 223-273 (294)
12 KOG3119 Basic region leucine z 97.5 0.00062 1.3E-08 56.7 8.5 50 50-99 191-240 (269)
13 COG3074 Uncharacterized protei 97.0 0.0069 1.5E-07 41.9 7.8 55 75-129 19-73 (79)
14 KOG3863 bZIP transcription fac 96.8 0.0032 6.9E-08 58.0 6.7 47 54-100 491-537 (604)
15 PF06005 DUF904: Protein of un 96.8 0.037 8E-07 37.9 10.3 54 76-129 6-66 (72)
16 PRK15422 septal ring assembly 96.7 0.018 3.9E-07 40.3 8.3 56 75-130 19-74 (79)
17 TIGR02449 conserved hypothetic 96.6 0.027 5.8E-07 38.1 8.5 57 77-133 3-59 (65)
18 PF06005 DUF904: Protein of un 96.6 0.064 1.4E-06 36.7 10.4 53 74-126 18-70 (72)
19 TIGR02449 conserved hypothetic 96.5 0.06 1.3E-06 36.4 9.5 57 74-130 7-63 (65)
20 TIGR02894 DNA_bind_RsfA transc 96.5 0.041 8.9E-07 43.2 9.9 60 74-133 87-149 (161)
21 PF06156 DUF972: Protein of un 96.3 0.039 8.4E-07 40.4 8.4 49 81-129 8-56 (107)
22 PF02183 HALZ: Homeobox associ 96.2 0.024 5.1E-07 35.6 5.9 42 85-126 2-43 (45)
23 PF06156 DUF972: Protein of un 95.9 0.064 1.4E-06 39.3 7.9 50 74-123 8-57 (107)
24 PF14197 Cep57_CLD_2: Centroso 95.8 0.17 3.6E-06 34.4 9.1 56 73-128 11-66 (69)
25 PRK13169 DNA replication intia 95.8 0.075 1.6E-06 39.2 7.9 47 75-121 9-55 (110)
26 PRK13169 DNA replication intia 95.7 0.11 2.3E-06 38.4 8.5 53 77-129 4-56 (110)
27 PF07989 Microtub_assoc: Micro 95.5 0.24 5.1E-06 34.1 9.1 61 76-136 2-70 (75)
28 PRK10884 SH3 domain-containing 95.4 0.21 4.5E-06 40.4 9.8 33 98-130 128-160 (206)
29 COG4467 Regulator of replicati 94.8 0.18 3.8E-06 37.5 7.2 47 81-127 8-54 (114)
30 PF14662 CCDC155: Coiled-coil 94.7 0.37 8E-06 38.9 9.3 59 76-134 3-61 (193)
31 COG4026 Uncharacterized protei 94.7 0.28 6E-06 41.0 8.8 58 73-130 141-198 (290)
32 PF07888 CALCOCO1: Calcium bin 94.3 1.6 3.4E-05 40.2 13.5 81 55-135 152-232 (546)
33 PF09726 Macoilin: Transmembra 94.1 1.1 2.4E-05 42.2 12.4 63 74-136 538-600 (697)
34 PF11559 ADIP: Afadin- and alp 94.0 1.6 3.5E-05 32.7 11.1 82 53-134 45-126 (151)
35 PF09304 Cortex-I_coil: Cortex 94.0 1.7 3.7E-05 32.1 10.7 65 68-132 10-74 (107)
36 PF12325 TMF_TATA_bd: TATA ele 93.9 1.4 3E-05 32.9 10.3 22 110-131 69-90 (120)
37 PF09755 DUF2046: Uncharacteri 93.8 0.76 1.7E-05 39.5 9.9 54 77-130 23-76 (310)
38 PRK10884 SH3 domain-containing 93.8 0.76 1.7E-05 37.1 9.4 43 74-116 125-167 (206)
39 PRK13729 conjugal transfer pil 93.6 0.29 6.2E-06 44.3 7.3 51 73-123 75-125 (475)
40 PF08614 ATG16: Autophagy prot 93.5 2.9 6.3E-05 32.8 12.5 62 57-118 120-181 (194)
41 KOG3119 Basic region leucine z 93.5 0.82 1.8E-05 38.1 9.5 63 74-136 194-256 (269)
42 PF02183 HALZ: Homeobox associ 93.1 0.51 1.1E-05 29.5 5.9 40 93-132 3-42 (45)
43 PF10473 CENP-F_leu_zip: Leuci 93.1 3.1 6.8E-05 31.9 13.1 82 52-133 30-111 (140)
44 PRK11637 AmiB activator; Provi 93.1 4.1 9E-05 35.5 13.6 63 68-130 62-124 (428)
45 PF06785 UPF0242: Uncharacteri 93.0 0.77 1.7E-05 40.3 8.8 60 68-127 121-180 (401)
46 PF11559 ADIP: Afadin- and alp 93.0 3 6.4E-05 31.3 13.2 60 70-129 48-107 (151)
47 smart00338 BRLZ basic region l 92.8 0.68 1.5E-05 30.2 6.4 38 95-132 26-63 (65)
48 COG4467 Regulator of replicati 92.4 0.84 1.8E-05 33.9 7.1 47 74-120 8-54 (114)
49 PF10224 DUF2205: Predicted co 92.3 1.8 3.9E-05 30.3 8.4 45 77-121 19-63 (80)
50 PF04880 NUDE_C: NUDE protein, 92.2 0.28 6.1E-06 38.6 4.7 52 76-132 2-53 (166)
51 KOG4005 Transcription factor X 92.2 2.7 5.9E-05 35.4 10.6 55 80-134 89-143 (292)
52 PF07106 TBPIP: Tat binding pr 92.2 1.2 2.5E-05 34.1 8.0 54 76-129 81-136 (169)
53 PF12325 TMF_TATA_bd: TATA ele 92.1 3.8 8.3E-05 30.5 12.5 16 116-131 96-111 (120)
54 KOG4571 Activating transcripti 92.1 1.5 3.2E-05 37.5 9.2 45 92-136 245-289 (294)
55 PRK15422 septal ring assembly 92.0 2.5 5.3E-05 29.7 8.7 51 74-124 4-54 (79)
56 PF10805 DUF2730: Protein of u 91.8 3 6.4E-05 30.1 9.3 62 73-134 34-97 (106)
57 PF11932 DUF3450: Protein of u 91.7 5 0.00011 32.5 11.7 49 77-125 45-93 (251)
58 TIGR00219 mreC rod shape-deter 91.6 0.58 1.3E-05 39.2 6.3 37 81-117 66-106 (283)
59 PF12808 Mto2_bdg: Micro-tubul 91.5 0.68 1.5E-05 30.0 5.1 50 71-123 1-50 (52)
60 PF11932 DUF3450: Protein of u 91.4 6.1 0.00013 32.0 11.9 46 72-117 54-99 (251)
61 PF15294 Leu_zip: Leucine zipp 91.3 1.3 2.8E-05 37.6 7.9 48 79-126 130-177 (278)
62 smart00340 HALZ homeobox assoc 91.2 0.65 1.4E-05 29.1 4.6 27 97-123 7-33 (44)
63 PF09728 Taxilin: Myosin-like 91.1 2.8 6.1E-05 35.6 10.0 64 74-137 244-307 (309)
64 TIGR03752 conj_TIGR03752 integ 91.1 1.9 4.2E-05 39.0 9.3 59 75-133 74-133 (472)
65 PF07407 Seadorna_VP6: Seadorn 91.0 1.1 2.5E-05 39.2 7.5 54 81-136 32-89 (420)
66 PF08614 ATG16: Autophagy prot 90.7 3.1 6.6E-05 32.7 9.2 53 73-125 129-181 (194)
67 PRK11637 AmiB activator; Provi 90.5 7.5 0.00016 33.9 12.3 65 64-128 65-129 (428)
68 PF10224 DUF2205: Predicted co 90.4 4.6 9.9E-05 28.3 9.1 63 74-136 8-71 (80)
69 PF00170 bZIP_1: bZIP transcri 90.3 2.1 4.5E-05 27.8 6.7 37 94-130 25-61 (64)
70 PF08317 Spc7: Spc7 kinetochor 90.2 4.1 8.8E-05 34.5 10.2 60 74-133 209-268 (325)
71 PRK02119 hypothetical protein; 90.2 4.3 9.3E-05 27.6 8.6 49 74-129 9-57 (73)
72 PF09744 Jnk-SapK_ap_N: JNK_SA 90.1 2.2 4.7E-05 33.2 7.7 56 76-131 91-146 (158)
73 PF14197 Cep57_CLD_2: Centroso 90.0 2.8 6.1E-05 28.3 7.3 40 81-120 26-65 (69)
74 KOG0977 Nuclear envelope prote 90.0 3.8 8.2E-05 37.8 10.3 62 64-125 131-192 (546)
75 PF07106 TBPIP: Tat binding pr 89.9 3.9 8.4E-05 31.2 9.0 52 72-123 84-137 (169)
76 PF04102 SlyX: SlyX; InterPro 89.8 2.8 6.2E-05 28.0 7.2 49 74-122 4-52 (69)
77 KOG1853 LIS1-interacting prote 89.7 3.7 8.1E-05 35.0 9.4 30 102-131 91-120 (333)
78 COG3883 Uncharacterized protei 89.2 5.7 0.00012 33.5 10.1 63 71-133 35-97 (265)
79 PF12718 Tropomyosin_1: Tropom 89.2 7.1 0.00015 29.6 9.9 55 74-128 14-68 (143)
80 PRK04406 hypothetical protein; 88.7 5.9 0.00013 27.1 8.8 52 78-129 8-59 (75)
81 KOG1414 Transcriptional activa 88.5 0.031 6.8E-07 48.8 -3.9 56 45-100 146-205 (395)
82 KOG3650 Predicted coiled-coil 88.5 4.6 0.0001 29.9 8.0 43 96-138 71-113 (120)
83 PF12718 Tropomyosin_1: Tropom 88.4 8.7 0.00019 29.1 9.8 52 78-129 11-62 (143)
84 PRK00888 ftsB cell division pr 88.2 2.4 5.2E-05 30.7 6.4 27 74-100 34-60 (105)
85 PF15233 SYCE1: Synaptonemal c 88.2 6.6 0.00014 30.1 8.9 62 75-136 7-68 (134)
86 TIGR02894 DNA_bind_RsfA transc 87.7 8.6 0.00019 30.3 9.6 57 76-132 99-155 (161)
87 PRK04325 hypothetical protein; 87.7 6.9 0.00015 26.6 8.3 48 75-129 10-57 (74)
88 PF05266 DUF724: Protein of un 87.6 13 0.00028 29.7 12.7 78 53-130 89-173 (190)
89 PRK13922 rod shape-determining 87.6 1.9 4.2E-05 35.2 6.3 34 84-117 72-108 (276)
90 PF12329 TMF_DNA_bd: TATA elem 87.5 7 0.00015 26.6 9.7 62 72-133 10-71 (74)
91 PF01166 TSC22: TSC-22/dip/bun 87.5 0.9 2E-05 30.2 3.4 29 89-117 15-43 (59)
92 KOG1414 Transcriptional activa 87.4 0.14 2.9E-06 44.8 -0.7 48 47-94 279-326 (395)
93 PF04849 HAP1_N: HAP1 N-termin 87.3 8.5 0.00018 33.2 10.1 23 112-134 272-294 (306)
94 PF04102 SlyX: SlyX; InterPro 87.1 6.5 0.00014 26.2 7.6 51 79-129 2-52 (69)
95 PF13747 DUF4164: Domain of un 86.9 8.7 0.00019 27.0 11.6 75 52-126 10-84 (89)
96 PF08826 DMPK_coil: DMPK coile 86.7 7.2 0.00016 25.9 7.9 44 79-122 16-59 (61)
97 PRK02793 phi X174 lysis protei 86.1 8.4 0.00018 26.1 8.4 49 74-129 8-56 (72)
98 PF10174 Cast: RIM-binding pro 86.1 7.1 0.00015 37.4 9.9 64 70-133 297-360 (775)
99 PF14915 CCDC144C: CCDC144C pr 86.0 16 0.00034 31.5 11.0 75 62-136 181-255 (305)
100 KOG2077 JNK/SAPK-associated pr 86.0 4 8.6E-05 38.4 7.9 54 77-130 325-378 (832)
101 PRK00846 hypothetical protein; 85.7 9.8 0.00021 26.4 8.4 51 79-129 11-61 (77)
102 COG4026 Uncharacterized protei 85.7 7.7 0.00017 32.6 8.7 53 73-125 134-186 (290)
103 PRK02119 hypothetical protein; 85.4 8.9 0.00019 26.1 7.6 41 96-136 17-57 (73)
104 PF14662 CCDC155: Coiled-coil 85.3 10 0.00022 30.7 9.1 43 79-121 100-142 (193)
105 TIGR02209 ftsL_broad cell divi 85.0 7.4 0.00016 26.1 7.2 44 88-132 24-67 (85)
106 PF04849 HAP1_N: HAP1 N-termin 84.9 14 0.0003 31.9 10.2 60 75-134 242-301 (306)
107 PRK00295 hypothetical protein; 84.9 9.3 0.0002 25.6 8.3 49 74-129 5-53 (68)
108 COG1579 Zn-ribbon protein, pos 84.6 22 0.00047 29.6 13.2 80 53-132 31-119 (239)
109 PF04999 FtsL: Cell division p 84.6 10 0.00022 26.3 7.9 47 86-133 33-79 (97)
110 KOG0982 Centrosomal protein Nu 84.1 18 0.0004 32.8 10.9 56 75-130 298-353 (502)
111 PF12777 MT: Microtubule-bindi 84.0 13 0.00029 31.6 9.8 61 75-135 229-289 (344)
112 PF05812 Herpes_BLRF2: Herpesv 83.8 2.3 4.9E-05 31.9 4.5 30 72-101 1-30 (118)
113 PF06785 UPF0242: Uncharacteri 83.4 26 0.00057 31.0 11.3 70 53-126 75-158 (401)
114 PRK00888 ftsB cell division pr 82.9 5.9 0.00013 28.6 6.2 39 90-128 29-67 (105)
115 PF15035 Rootletin: Ciliary ro 82.8 18 0.00039 28.7 9.4 43 80-122 73-115 (182)
116 PF06632 XRCC4: DNA double-str 82.6 16 0.00034 31.8 9.8 39 76-114 139-177 (342)
117 PF04977 DivIC: Septum formati 82.5 7.6 0.00016 25.3 6.3 26 75-100 25-50 (80)
118 KOG1962 B-cell receptor-associ 82.4 6.8 0.00015 32.2 7.1 26 98-123 182-207 (216)
119 PF12711 Kinesin-relat_1: Kine 82.2 8.4 0.00018 27.3 6.6 42 84-125 20-67 (86)
120 PF04977 DivIC: Septum formati 82.2 11 0.00023 24.6 6.9 34 90-123 19-52 (80)
121 PF07558 Shugoshin_N: Shugoshi 81.9 1.9 4.2E-05 26.9 2.9 37 83-119 9-45 (46)
122 PRK02793 phi X174 lysis protei 81.8 14 0.00029 25.1 7.7 51 79-136 6-56 (72)
123 PF10506 MCC-bdg_PDZ: PDZ doma 81.7 14 0.00029 25.1 7.9 50 78-127 2-51 (67)
124 PF15058 Speriolin_N: Sperioli 81.3 3.8 8.2E-05 33.3 5.1 34 76-117 7-40 (200)
125 PHA03162 hypothetical protein; 81.2 1.3 2.8E-05 33.9 2.3 28 71-98 10-37 (135)
126 PF07888 CALCOCO1: Calcium bin 81.0 19 0.00042 33.3 10.2 53 77-129 160-219 (546)
127 PF09738 DUF2051: Double stran 80.8 17 0.00036 31.2 9.1 81 49-132 88-170 (302)
128 COG4942 Membrane-bound metallo 80.7 32 0.00069 30.9 11.2 70 53-122 38-107 (420)
129 PF05667 DUF812: Protein of un 80.7 26 0.00056 32.7 11.0 64 72-135 326-389 (594)
130 PF10482 CtIP_N: Tumour-suppre 80.5 21 0.00045 26.9 8.4 61 66-126 6-66 (120)
131 KOG0161 Myosin class II heavy 80.4 37 0.00081 35.9 12.9 59 77-135 1459-1517(1930)
132 KOG0250 DNA repair protein RAD 80.4 24 0.00052 35.2 11.0 60 71-130 369-429 (1074)
133 PF05377 FlaC_arch: Flagella a 80.3 14 0.0003 24.2 6.7 29 103-131 15-43 (55)
134 COG3883 Uncharacterized protei 80.0 26 0.00057 29.6 10.0 55 77-131 48-102 (265)
135 PF15035 Rootletin: Ciliary ro 79.8 20 0.00043 28.4 8.8 28 79-106 86-113 (182)
136 PF15369 KIAA1328: Uncharacter 79.8 21 0.00046 31.1 9.5 44 93-136 31-74 (328)
137 KOG4797 Transcriptional regula 79.3 5.1 0.00011 30.0 4.9 30 87-116 66-95 (123)
138 PF07716 bZIP_2: Basic region 79.3 8.4 0.00018 24.2 5.3 30 94-123 24-53 (54)
139 TIGR03752 conj_TIGR03752 integ 79.2 8.8 0.00019 34.9 7.3 54 78-131 84-138 (472)
140 PF04899 MbeD_MobD: MbeD/MobD 79.1 17 0.00038 24.7 9.9 55 78-132 11-65 (70)
141 PF00038 Filament: Intermediat 79.0 34 0.00075 28.0 10.6 40 84-123 212-251 (312)
142 PRK00295 hypothetical protein; 78.9 17 0.00036 24.3 8.0 25 112-136 29-53 (68)
143 PF05700 BCAS2: Breast carcino 78.9 17 0.00036 29.3 8.2 37 97-133 177-213 (221)
144 PRK04406 hypothetical protein; 78.8 18 0.00039 24.7 7.8 49 74-122 11-59 (75)
145 PF11365 DUF3166: Protein of u 78.6 8 0.00017 28.0 5.6 32 94-125 14-45 (96)
146 PF05103 DivIVA: DivIVA protei 78.5 1.3 2.8E-05 31.9 1.5 45 74-118 25-69 (131)
147 PF05911 DUF869: Plant protein 78.0 14 0.00031 35.4 8.6 54 73-126 91-165 (769)
148 PF15397 DUF4618: Domain of un 78.0 41 0.00088 28.3 11.9 55 79-133 177-231 (258)
149 PRK04325 hypothetical protein; 77.9 19 0.00041 24.5 7.9 54 76-136 4-57 (74)
150 PF00038 Filament: Intermediat 77.9 37 0.00081 27.8 11.9 29 73-101 222-250 (312)
151 COG1579 Zn-ribbon protein, pos 77.9 39 0.00085 28.1 11.7 62 70-131 85-146 (239)
152 KOG4360 Uncharacterized coiled 77.8 22 0.00049 33.0 9.5 41 74-114 219-259 (596)
153 PRK10803 tol-pal system protei 77.6 12 0.00027 30.9 7.3 49 74-122 54-102 (263)
154 PF03962 Mnd1: Mnd1 family; I 77.5 33 0.00072 27.1 10.2 17 18-34 25-41 (188)
155 COG3074 Uncharacterized protei 77.4 21 0.00045 24.8 7.1 33 89-121 26-58 (79)
156 PHA03155 hypothetical protein; 77.3 3.7 7.9E-05 30.7 3.6 26 74-99 8-33 (115)
157 PF07798 DUF1640: Protein of u 77.2 24 0.00052 27.3 8.4 13 18-30 14-26 (177)
158 KOG0250 DNA repair protein RAD 77.2 42 0.0009 33.6 11.6 74 57-130 362-436 (1074)
159 PF07058 Myosin_HC-like: Myosi 76.8 12 0.00027 32.5 7.2 50 83-132 2-51 (351)
160 smart00787 Spc7 Spc7 kinetocho 76.7 36 0.00079 29.1 10.0 53 78-130 208-260 (312)
161 KOG1962 B-cell receptor-associ 76.6 20 0.00043 29.5 8.0 47 79-125 149-195 (216)
162 PF04111 APG6: Autophagy prote 76.5 40 0.00087 28.7 10.2 41 74-114 64-104 (314)
163 PF10473 CENP-F_leu_zip: Leuci 76.5 32 0.00069 26.3 12.2 61 74-134 24-91 (140)
164 PF09789 DUF2353: Uncharacteri 76.5 37 0.0008 29.4 10.0 45 78-122 69-113 (319)
165 PF05837 CENP-H: Centromere pr 76.4 26 0.00055 25.2 8.4 61 75-136 18-78 (106)
166 PF09738 DUF2051: Double stran 76.1 36 0.00079 29.1 9.8 52 81-132 105-163 (302)
167 PF07412 Geminin: Geminin; In 76.0 25 0.00054 28.6 8.4 45 87-135 124-168 (200)
168 KOG2129 Uncharacterized conser 75.9 6.6 0.00014 35.7 5.5 52 76-127 45-96 (552)
169 PF06428 Sec2p: GDP/GTP exchan 75.9 15 0.00033 26.6 6.5 58 74-131 8-66 (100)
170 PRK00736 hypothetical protein; 75.9 21 0.00045 23.9 8.2 48 74-128 5-52 (68)
171 PHA02562 46 endonuclease subun 75.7 57 0.0012 28.8 12.8 23 99-121 362-384 (562)
172 PRK00736 hypothetical protein; 75.7 21 0.00046 23.8 7.9 25 112-136 29-53 (68)
173 KOG3335 Predicted coiled-coil 75.3 6.8 0.00015 31.4 4.9 47 49-101 87-133 (181)
174 PF04156 IncA: IncA protein; 75.2 35 0.00075 26.1 13.6 63 70-132 126-188 (191)
175 PF09789 DUF2353: Uncharacteri 74.6 11 0.00025 32.5 6.5 25 75-99 87-111 (319)
176 KOG0971 Microtubule-associated 74.2 21 0.00045 35.4 8.6 58 76-133 327-399 (1243)
177 PF01166 TSC22: TSC-22/dip/bun 74.0 5.9 0.00013 26.4 3.6 28 75-102 15-42 (59)
178 PF08172 CASP_C: CASP C termin 73.7 28 0.00061 28.9 8.4 42 74-122 93-134 (248)
179 smart00787 Spc7 Spc7 kinetocho 73.7 45 0.00097 28.5 9.8 51 77-127 147-197 (312)
180 PRK14127 cell division protein 73.5 13 0.00028 27.4 5.7 41 74-114 30-70 (109)
181 PF08317 Spc7: Spc7 kinetochor 73.5 33 0.00071 29.0 9.0 10 77-86 187-196 (325)
182 PF01486 K-box: K-box region; 73.4 18 0.00038 25.4 6.3 27 92-118 72-98 (100)
183 PF08172 CASP_C: CASP C termin 73.3 21 0.00045 29.6 7.5 44 58-102 92-135 (248)
184 PF10146 zf-C4H2: Zinc finger- 73.3 31 0.00067 28.4 8.5 48 72-119 30-77 (230)
185 PF04340 DUF484: Protein of un 73.0 17 0.00036 29.0 6.7 48 76-127 42-89 (225)
186 PHA03011 hypothetical protein; 72.9 36 0.00078 25.3 8.0 54 74-127 64-117 (120)
187 COG2433 Uncharacterized conser 72.2 21 0.00045 33.7 7.9 24 77-100 439-462 (652)
188 PF08647 BRE1: BRE1 E3 ubiquit 72.0 32 0.00069 24.2 11.8 71 56-126 6-76 (96)
189 KOG4674 Uncharacterized conser 72.0 38 0.00082 35.7 10.3 67 65-131 1234-1300(1822)
190 PF11180 DUF2968: Protein of u 71.2 54 0.0012 26.6 13.2 77 54-130 106-182 (192)
191 KOG3650 Predicted coiled-coil 71.2 20 0.00043 26.6 6.1 31 92-122 74-104 (120)
192 PF13863 DUF4200: Domain of un 71.0 35 0.00076 24.3 9.6 47 55-101 62-108 (126)
193 KOG2391 Vacuolar sorting prote 71.0 46 0.001 29.4 9.3 57 71-127 222-278 (365)
194 PF13815 Dzip-like_N: Iguana/D 70.8 25 0.00054 25.5 6.7 39 85-123 77-115 (118)
195 PF01763 Herpes_UL6: Herpesvir 70.8 59 0.0013 30.3 10.5 44 74-117 363-406 (557)
196 PF04728 LPP: Lipoprotein leuc 70.6 27 0.00059 22.9 8.4 30 75-104 4-33 (56)
197 TIGR02132 phaR_Bmeg polyhydrox 70.6 48 0.001 26.8 8.7 64 74-137 79-142 (189)
198 PF04111 APG6: Autophagy prote 70.5 66 0.0014 27.3 12.1 17 108-124 112-128 (314)
199 KOG4643 Uncharacterized coiled 70.3 37 0.00079 34.0 9.3 54 72-125 528-584 (1195)
200 KOG4196 bZIP transcription fac 70.2 47 0.001 25.5 9.4 56 76-132 49-104 (135)
201 PF07334 IFP_35_N: Interferon- 70.1 11 0.00023 26.3 4.4 25 105-129 3-27 (76)
202 PF02388 FemAB: FemAB family; 70.1 44 0.00096 29.1 9.2 57 74-134 242-298 (406)
203 KOG4343 bZIP transcription fac 70.1 30 0.00065 32.4 8.4 31 92-122 306-336 (655)
204 PF03980 Nnf1: Nnf1 ; InterPr 70.0 9.4 0.0002 27.1 4.2 30 72-101 78-107 (109)
205 PRK13729 conjugal transfer pil 69.9 32 0.0007 31.4 8.4 55 73-127 68-122 (475)
206 PF15290 Syntaphilin: Golgi-lo 69.9 68 0.0015 27.7 9.9 10 101-110 107-116 (305)
207 COG1792 MreC Cell shape-determ 69.7 15 0.00032 30.9 6.0 33 86-118 71-106 (284)
208 PF12329 TMF_DNA_bd: TATA elem 69.7 32 0.00069 23.3 9.3 60 76-135 7-66 (74)
209 PRK00846 hypothetical protein; 69.1 36 0.00077 23.6 7.8 49 74-122 13-61 (77)
210 PRK04863 mukB cell division pr 68.4 1.4E+02 0.003 31.0 13.3 13 57-69 325-337 (1486)
211 PF09763 Sec3_C: Exocyst compl 68.4 38 0.00083 31.5 8.9 65 74-138 37-101 (701)
212 PF08826 DMPK_coil: DMPK coile 68.3 32 0.00069 22.8 7.7 45 85-129 15-59 (61)
213 PF04642 DUF601: Protein of un 68.3 6.6 0.00014 33.4 3.5 56 74-129 217-272 (311)
214 PRK10963 hypothetical protein; 68.2 19 0.00042 28.9 6.2 41 81-125 44-84 (223)
215 PF06216 RTBV_P46: Rice tungro 67.9 57 0.0012 28.1 9.1 42 89-130 72-113 (389)
216 PF13874 Nup54: Nucleoporin co 67.9 42 0.00092 25.1 7.6 56 77-132 68-123 (141)
217 KOG0495 HAT repeat protein [RN 67.7 23 0.00049 34.2 7.2 41 70-110 113-153 (913)
218 cd07429 Cby_like Chibby, a nuc 67.7 18 0.0004 26.6 5.4 19 82-100 80-98 (108)
219 PF14988 DUF4515: Domain of un 67.4 64 0.0014 25.9 10.5 48 77-124 152-199 (206)
220 KOG0977 Nuclear envelope prote 67.4 49 0.0011 30.7 9.2 39 92-130 152-190 (546)
221 PF04136 Sec34: Sec34-like fam 67.2 54 0.0012 25.1 9.3 65 74-138 21-88 (157)
222 PF15070 GOLGA2L5: Putative go 67.0 1.1E+02 0.0024 28.6 13.3 45 70-114 118-186 (617)
223 KOG3433 Protein involved in me 66.9 68 0.0015 26.1 9.3 31 69-99 111-141 (203)
224 PF05667 DUF812: Protein of un 66.5 49 0.0011 30.9 9.1 47 73-119 334-380 (594)
225 PF05837 CENP-H: Centromere pr 66.5 40 0.00086 24.2 7.0 37 85-121 7-43 (106)
226 cd07666 BAR_SNX7 The Bin/Amphi 66.4 75 0.0016 26.4 10.2 61 70-133 159-220 (243)
227 PF14645 Chibby: Chibby family 65.8 33 0.00071 25.3 6.5 37 79-115 76-112 (116)
228 KOG1103 Predicted coiled-coil 65.7 49 0.0011 29.8 8.5 67 62-128 226-292 (561)
229 PF09730 BicD: Microtubule-ass 65.6 33 0.00071 32.8 7.9 47 83-129 99-148 (717)
230 COG4942 Membrane-bound metallo 65.6 1E+02 0.0023 27.7 13.3 69 60-128 38-106 (420)
231 TIGR02209 ftsL_broad cell divi 65.2 35 0.00075 22.7 6.1 31 71-101 28-58 (85)
232 PF12711 Kinesin-relat_1: Kine 64.8 32 0.00069 24.4 6.0 49 74-124 31-85 (86)
233 PF12709 Kinetocho_Slk19: Cent 64.7 48 0.001 23.6 8.4 29 75-103 43-71 (87)
234 PF05377 FlaC_arch: Flagella a 64.7 37 0.0008 22.2 5.9 25 76-100 2-26 (55)
235 PF10146 zf-C4H2: Zinc finger- 64.6 79 0.0017 26.0 10.1 52 73-124 49-103 (230)
236 PF04728 LPP: Lipoprotein leuc 64.6 38 0.00081 22.3 8.4 48 81-128 3-50 (56)
237 PF15070 GOLGA2L5: Putative go 64.2 84 0.0018 29.5 10.2 15 109-123 160-174 (617)
238 PRK10636 putative ABC transpor 64.2 95 0.0021 28.6 10.5 62 73-134 562-630 (638)
239 PRK14127 cell division protein 64.1 55 0.0012 24.0 8.3 59 75-133 38-102 (109)
240 KOG0982 Centrosomal protein Nu 64.0 44 0.00096 30.5 8.0 24 102-125 304-327 (502)
241 KOG0995 Centromere-associated 64.0 92 0.002 29.2 10.2 42 74-115 280-321 (581)
242 KOG0612 Rho-associated, coiled 63.6 1.8E+02 0.004 29.8 13.0 11 12-22 394-404 (1317)
243 PF10212 TTKRSYEDQ: Predicted 63.3 98 0.0021 28.7 10.3 54 74-127 420-473 (518)
244 TIGR00606 rad50 rad50. This fa 63.1 1.7E+02 0.0037 29.5 12.7 70 60-129 843-915 (1311)
245 KOG0995 Centromere-associated 63.1 36 0.00078 31.8 7.5 50 76-125 275-324 (581)
246 PRK10803 tol-pal system protei 63.0 86 0.0019 25.9 9.6 43 72-114 59-101 (263)
247 PF03961 DUF342: Protein of un 62.9 96 0.0021 27.3 10.0 33 95-127 375-407 (451)
248 PRK13922 rod shape-determining 62.5 84 0.0018 25.6 10.2 32 103-134 77-111 (276)
249 KOG2264 Exostosin EXT1L [Signa 62.0 92 0.002 29.8 9.9 56 74-129 93-148 (907)
250 PF07407 Seadorna_VP6: Seadorn 61.5 13 0.00029 32.8 4.2 26 78-103 36-61 (420)
251 PF10805 DUF2730: Protein of u 61.3 58 0.0013 23.3 9.6 49 73-128 48-98 (106)
252 PF02403 Seryl_tRNA_N: Seryl-t 61.2 54 0.0012 22.9 9.9 25 106-130 71-95 (108)
253 PF07889 DUF1664: Protein of u 60.9 69 0.0015 24.1 8.9 26 75-100 69-94 (126)
254 PF09486 HrpB7: Bacterial type 60.9 78 0.0017 24.7 9.7 54 75-128 80-133 (158)
255 KOG0243 Kinesin-like protein [ 60.6 1.2E+02 0.0026 30.4 10.9 59 77-135 444-502 (1041)
256 KOG1029 Endocytic adaptor prot 60.1 1.1E+02 0.0024 30.3 10.3 19 108-126 436-454 (1118)
257 KOG0971 Microtubule-associated 59.9 51 0.0011 32.9 8.1 63 74-136 339-437 (1243)
258 PF03980 Nnf1: Nnf1 ; InterPr 59.8 27 0.00058 24.7 5.0 32 92-123 77-108 (109)
259 PTZ00454 26S protease regulato 59.6 57 0.0012 28.6 7.9 13 82-94 30-42 (398)
260 PF05529 Bap31: B-cell recepto 59.6 80 0.0017 24.4 9.1 37 88-124 154-190 (192)
261 PRK14872 rod shape-determining 59.5 22 0.00049 30.9 5.3 32 84-115 60-94 (337)
262 KOG3564 GTPase-activating prot 59.5 1.4E+02 0.003 27.9 10.4 65 70-134 45-109 (604)
263 KOG0946 ER-Golgi vesicle-tethe 59.4 49 0.0011 32.5 7.9 56 72-127 669-724 (970)
264 PF10211 Ax_dynein_light: Axon 59.2 87 0.0019 24.7 11.7 53 76-128 122-175 (189)
265 PF08232 Striatin: Striatin fa 59.0 49 0.0011 24.8 6.5 55 57-118 15-69 (134)
266 KOG4807 F-actin binding protei 58.8 79 0.0017 28.9 8.7 53 70-122 389-455 (593)
267 PF07200 Mod_r: Modifier of ru 58.5 72 0.0016 23.5 9.3 53 54-107 36-88 (150)
268 COG2433 Uncharacterized conser 58.2 1.4E+02 0.0029 28.5 10.3 33 75-107 423-455 (652)
269 PF02403 Seryl_tRNA_N: Seryl-t 58.1 61 0.0013 22.6 8.5 56 77-132 32-90 (108)
270 PF13942 Lipoprotein_20: YfhG 58.0 92 0.002 25.0 8.1 43 89-131 117-159 (179)
271 KOG0964 Structural maintenance 57.9 2.2E+02 0.0047 28.9 12.0 74 62-135 420-500 (1200)
272 PF13815 Dzip-like_N: Iguana/D 57.7 70 0.0015 23.1 8.5 39 79-117 78-116 (118)
273 KOG0804 Cytoplasmic Zn-finger 57.6 1.6E+02 0.0034 27.1 10.7 53 76-128 391-447 (493)
274 PF07558 Shugoshin_N: Shugoshi 57.5 15 0.00033 22.8 2.9 37 89-125 8-44 (46)
275 PF05278 PEARLI-4: Arabidopsis 57.5 1.2E+02 0.0026 25.8 12.2 56 73-128 206-261 (269)
276 PF10186 Atg14: UV radiation r 57.4 98 0.0021 24.7 12.9 46 72-117 61-106 (302)
277 KOG4643 Uncharacterized coiled 57.3 2.2E+02 0.0048 28.8 12.4 81 52-132 372-452 (1195)
278 PRK11147 ABC transporter ATPas 57.2 84 0.0018 28.8 8.9 56 76-131 570-631 (635)
279 PRK14872 rod shape-determining 57.2 33 0.00072 29.9 6.0 27 102-128 57-83 (337)
280 PRK05892 nucleoside diphosphat 57.2 65 0.0014 24.7 7.1 59 74-134 11-72 (158)
281 PF00261 Tropomyosin: Tropomyo 57.1 1E+02 0.0022 24.8 8.8 33 76-108 94-126 (237)
282 PF14645 Chibby: Chibby family 57.1 69 0.0015 23.6 6.9 27 78-104 82-108 (116)
283 PF07200 Mod_r: Modifier of ru 57.0 77 0.0017 23.4 9.2 7 23-29 7-13 (150)
284 KOG4674 Uncharacterized conser 57.0 1.4E+02 0.003 31.8 11.0 66 68-133 655-720 (1822)
285 PF10226 DUF2216: Uncharacteri 57.0 1.1E+02 0.0023 25.0 11.6 77 52-128 22-120 (195)
286 PF05700 BCAS2: Breast carcino 57.0 1E+02 0.0022 24.7 10.5 42 79-120 173-214 (221)
287 COG1196 Smc Chromosome segrega 56.9 2.1E+02 0.0046 28.5 13.2 34 97-130 732-765 (1163)
288 PTZ00454 26S protease regulato 56.9 67 0.0015 28.2 7.9 19 86-104 27-45 (398)
289 KOG2010 Double stranded RNA bi 56.9 1.1E+02 0.0023 27.2 9.0 70 47-119 121-199 (405)
290 PF05335 DUF745: Protein of un 56.6 1E+02 0.0022 24.7 10.2 62 71-132 64-125 (188)
291 PF13118 DUF3972: Protein of u 56.4 58 0.0013 24.7 6.4 45 75-119 79-123 (126)
292 KOG2991 Splicing regulator [RN 56.0 83 0.0018 27.1 8.0 31 109-139 250-280 (330)
293 PF08961 DUF1875: Domain of un 55.9 3.8 8.2E-05 34.1 0.0 42 73-114 121-162 (243)
294 smart00340 HALZ homeobox assoc 55.8 37 0.0008 21.3 4.4 26 76-101 7-32 (44)
295 PRK02224 chromosome segregatio 55.5 1.9E+02 0.004 27.4 11.7 18 79-96 375-392 (880)
296 PF04859 DUF641: Plant protein 55.5 54 0.0012 24.9 6.2 41 76-116 89-129 (131)
297 PF09726 Macoilin: Transmembra 55.4 1.9E+02 0.0042 27.5 11.2 12 73-84 487-498 (697)
298 PF14817 HAUS5: HAUS augmin-li 55.4 1.1E+02 0.0023 29.0 9.3 26 78-103 83-108 (632)
299 KOG0933 Structural maintenance 55.2 2.4E+02 0.0052 28.6 12.4 38 78-115 819-856 (1174)
300 PF10234 Cluap1: Clusterin-ass 55.2 1.3E+02 0.0028 25.4 9.1 46 91-136 172-217 (267)
301 KOG0483 Transcription factor H 55.2 43 0.00094 27.0 6.0 44 89-132 106-149 (198)
302 PRK10722 hypothetical protein; 54.9 63 0.0014 27.2 7.0 32 101-132 175-206 (247)
303 PF06419 COG6: Conserved oligo 54.8 1.7E+02 0.0037 27.1 10.5 66 73-138 44-109 (618)
304 KOG3091 Nuclear pore complex, 54.7 1E+02 0.0022 28.4 8.8 13 117-129 412-424 (508)
305 KOG1029 Endocytic adaptor prot 54.6 1.5E+02 0.0033 29.3 10.2 27 102-128 437-463 (1118)
306 PF11382 DUF3186: Protein of u 54.4 38 0.00083 28.6 5.8 24 76-99 34-57 (308)
307 PF12808 Mto2_bdg: Micro-tubul 54.3 22 0.00049 22.9 3.4 29 74-102 22-50 (52)
308 PF06320 GCN5L1: GCN5-like pro 54.1 87 0.0019 23.1 8.2 59 73-131 32-90 (121)
309 PF08606 Prp19: Prp19/Pso4-lik 53.9 53 0.0012 22.5 5.4 59 76-134 10-68 (70)
310 KOG1318 Helix loop helix trans 53.8 1.7E+02 0.0037 26.4 11.2 80 49-128 225-323 (411)
311 KOG4807 F-actin binding protei 53.6 1.6E+02 0.0034 27.0 9.7 46 82-127 436-481 (593)
312 PF01486 K-box: K-box region; 52.9 48 0.001 23.1 5.3 33 65-97 62-98 (100)
313 COG5185 HEC1 Protein involved 52.8 99 0.0021 28.8 8.4 56 73-128 486-545 (622)
314 PF10481 CENP-F_N: Cenp-F N-te 52.7 1.5E+02 0.0033 25.5 9.5 61 71-131 50-124 (307)
315 PRK10920 putative uroporphyrin 52.6 1.7E+02 0.0036 26.0 9.8 35 93-127 90-124 (390)
316 PF06103 DUF948: Bacterial pro 52.2 72 0.0016 21.6 10.1 63 74-136 26-88 (90)
317 KOG3647 Predicted coiled-coil 52.1 1.1E+02 0.0023 26.6 8.1 53 79-131 110-162 (338)
318 PRK03992 proteasome-activating 52.1 66 0.0014 27.8 7.0 37 78-114 12-48 (389)
319 KOG0946 ER-Golgi vesicle-tethe 51.8 2.4E+02 0.0051 28.0 11.0 63 66-128 656-718 (970)
320 KOG4797 Transcriptional regula 51.7 41 0.00088 25.2 4.9 28 74-101 67-94 (123)
321 TIGR00606 rad50 rad50. This fa 51.7 2.7E+02 0.0058 28.2 11.9 61 72-132 1026-1091(1311)
322 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.2 96 0.0021 22.8 10.3 18 111-128 100-117 (132)
323 PF15058 Speriolin_N: Sperioli 51.2 27 0.00058 28.4 4.1 27 97-123 7-33 (200)
324 KOG0980 Actin-binding protein 51.1 2.6E+02 0.0057 27.8 11.9 62 61-122 453-514 (980)
325 PF14712 Snapin_Pallidin: Snap 51.1 75 0.0016 21.5 9.1 60 76-135 16-83 (92)
326 PF13935 Ead_Ea22: Ead/Ea22-li 50.7 1E+02 0.0022 23.0 9.0 14 113-126 123-136 (139)
327 COG4420 Predicted membrane pro 50.6 1.3E+02 0.0027 24.4 7.9 46 89-134 135-180 (191)
328 KOG0288 WD40 repeat protein Ti 50.6 85 0.0018 28.5 7.5 52 74-125 27-78 (459)
329 PRK11546 zraP zinc resistance 50.6 1.1E+02 0.0025 23.5 7.8 69 48-125 44-112 (143)
330 PF13851 GAS: Growth-arrest sp 50.5 1.3E+02 0.0028 24.0 13.7 57 52-108 71-127 (201)
331 PF06698 DUF1192: Protein of u 50.5 71 0.0015 21.1 5.6 25 76-100 23-47 (59)
332 PF05266 DUF724: Protein of un 50.0 1.3E+02 0.0028 23.9 12.3 54 77-130 127-180 (190)
333 KOG4687 Uncharacterized coiled 50.0 1.2E+02 0.0026 26.5 8.0 57 73-129 50-117 (389)
334 PF10359 Fmp27_WPPW: RNA pol I 49.7 78 0.0017 28.3 7.3 57 74-130 170-228 (475)
335 KOG0249 LAR-interacting protei 49.6 1.3E+02 0.0029 29.4 8.9 60 72-132 208-267 (916)
336 PF13805 Pil1: Eisosome compon 49.3 1.6E+02 0.0036 24.9 8.9 62 55-121 129-191 (271)
337 PF05557 MAD: Mitotic checkpoi 49.0 1.6E+02 0.0034 27.6 9.5 24 78-101 507-530 (722)
338 COG2900 SlyX Uncharacterized p 48.6 88 0.0019 21.6 8.2 31 98-128 25-55 (72)
339 PF09766 FimP: Fms-interacting 48.4 1.5E+02 0.0032 25.6 8.6 41 69-109 103-143 (355)
340 PF09304 Cortex-I_coil: Cortex 48.2 1.1E+02 0.0024 22.6 12.9 69 58-126 21-89 (107)
341 PF04375 HemX: HemX; InterPro 48.2 1.8E+02 0.0039 25.1 9.4 20 106-125 97-116 (372)
342 KOG4673 Transcription factor T 48.2 1.2E+02 0.0026 29.6 8.4 52 80-131 703-754 (961)
343 PF13874 Nup54: Nucleoporin co 48.1 87 0.0019 23.4 6.4 36 91-126 89-124 (141)
344 PF08606 Prp19: Prp19/Pso4-lik 47.8 89 0.0019 21.4 9.5 32 97-128 10-41 (70)
345 PRK11281 hypothetical protein; 47.6 3.2E+02 0.0068 27.7 12.2 81 52-132 159-250 (1113)
346 PTZ00464 SNF-7-like protein; P 47.5 1.5E+02 0.0033 24.0 10.6 33 103-135 62-94 (211)
347 PF10234 Cluap1: Clusterin-ass 47.5 1.7E+02 0.0038 24.7 8.7 56 74-129 183-238 (267)
348 KOG0996 Structural maintenance 47.3 2.3E+02 0.0049 29.1 10.4 58 74-131 535-592 (1293)
349 KOG0483 Transcription factor H 46.7 44 0.00095 27.0 4.8 42 85-126 109-150 (198)
350 COG3159 Uncharacterized protei 46.6 1E+02 0.0022 25.5 6.9 21 108-128 68-88 (218)
351 PRK03918 chromosome segregatio 46.4 2.6E+02 0.0056 26.3 13.4 9 119-127 269-277 (880)
352 KOG0804 Cytoplasmic Zn-finger 46.3 1.8E+02 0.0038 26.8 8.9 39 91-129 385-423 (493)
353 TIGR00414 serS seryl-tRNA synt 46.2 2.1E+02 0.0045 25.3 9.3 22 107-128 74-95 (418)
354 PF07047 OPA3: Optic atrophy 3 45.8 57 0.0012 24.3 5.0 39 50-94 94-132 (134)
355 PF05600 DUF773: Protein of un 45.8 1.7E+02 0.0037 26.7 8.9 56 74-129 432-487 (507)
356 PF10205 KLRAQ: Predicted coil 45.7 1.2E+02 0.0026 22.2 10.3 43 86-128 24-66 (102)
357 PRK13182 racA polar chromosome 45.5 1.5E+02 0.0032 23.3 8.6 55 79-133 83-142 (175)
358 COG3879 Uncharacterized protei 45.5 1.5E+02 0.0033 24.9 7.8 13 110-122 90-102 (247)
359 PRK10929 putative mechanosensi 45.4 3.1E+02 0.0067 27.8 11.1 55 83-137 260-314 (1109)
360 KOG0288 WD40 repeat protein Ti 45.2 2.4E+02 0.0053 25.7 12.2 28 73-100 47-74 (459)
361 PF04871 Uso1_p115_C: Uso1 / p 45.2 1.3E+02 0.0028 22.6 9.6 31 98-128 58-89 (136)
362 KOG0996 Structural maintenance 45.1 3.3E+02 0.0073 28.0 11.2 65 64-128 532-596 (1293)
363 PF07334 IFP_35_N: Interferon- 45.0 56 0.0012 22.7 4.4 23 83-105 2-24 (76)
364 PF04999 FtsL: Cell division p 45.0 49 0.0011 22.7 4.3 27 75-101 43-69 (97)
365 PF12777 MT: Microtubule-bindi 45.0 1.3E+02 0.0027 25.7 7.6 49 52-100 220-268 (344)
366 PF07246 Phlebovirus_NSM: Phle 44.8 2E+02 0.0042 24.5 9.7 36 103-138 203-238 (264)
367 PRK04778 septation ring format 44.6 2.5E+02 0.0054 25.6 12.1 68 72-139 374-441 (569)
368 KOG1691 emp24/gp25L/p24 family 44.5 1.8E+02 0.0038 23.9 8.0 53 71-123 131-183 (210)
369 KOG4370 Ral-GTPase effector RL 44.5 93 0.002 28.5 6.8 45 92-136 410-454 (514)
370 PF10883 DUF2681: Protein of u 44.4 1.1E+02 0.0024 21.6 6.2 35 82-121 31-65 (87)
371 PF11180 DUF2968: Protein of u 44.2 1.7E+02 0.0037 23.7 10.0 57 81-137 126-182 (192)
372 KOG4603 TBP-1 interacting prot 44.2 1.7E+02 0.0037 23.7 8.3 23 107-129 121-143 (201)
373 PF04899 MbeD_MobD: MbeD/MobD 44.1 1E+02 0.0022 21.0 8.3 45 84-128 24-68 (70)
374 PF05622 HOOK: HOOK protein; 44.1 7.5 0.00016 36.3 0.0 60 68-127 319-381 (713)
375 KOG3156 Uncharacterized membra 43.8 1.9E+02 0.0041 24.0 8.4 34 92-125 105-139 (220)
376 PF12128 DUF3584: Protein of u 43.6 3.2E+02 0.007 27.4 11.1 43 83-125 492-534 (1201)
377 PF14915 CCDC144C: CCDC144C pr 43.6 1.9E+02 0.004 25.1 8.3 16 113-128 88-103 (305)
378 PF00435 Spectrin: Spectrin re 43.4 87 0.0019 20.0 9.8 23 111-133 75-97 (105)
379 PF08961 DUF1875: Domain of un 43.3 7.9 0.00017 32.2 0.0 39 81-119 122-160 (243)
380 KOG4360 Uncharacterized coiled 43.2 2.5E+02 0.0055 26.3 9.5 29 93-121 217-245 (596)
381 PF00769 ERM: Ezrin/radixin/mo 43.0 1.9E+02 0.004 23.7 11.9 53 78-130 65-117 (246)
382 PRK02224 chromosome segregatio 43.0 2.9E+02 0.0064 26.0 12.9 11 14-24 455-465 (880)
383 PRK14160 heat shock protein Gr 42.9 1.7E+02 0.0038 23.8 7.7 42 75-116 55-96 (211)
384 cd07591 BAR_Rvs161p The Bin/Am 42.8 1.8E+02 0.0039 23.5 9.3 69 68-136 117-193 (224)
385 TIGR03495 phage_LysB phage lys 42.8 1.5E+02 0.0032 22.6 8.4 65 75-139 20-84 (135)
386 PF06818 Fez1: Fez1; InterPro 42.8 1.7E+02 0.0037 23.8 7.6 64 70-133 76-162 (202)
387 PF05557 MAD: Mitotic checkpoi 42.7 1.2E+02 0.0026 28.4 7.6 26 74-99 510-535 (722)
388 PF15188 CCDC-167: Coiled-coil 42.5 1.2E+02 0.0026 21.4 7.4 55 75-129 6-63 (85)
389 cd07596 BAR_SNX The Bin/Amphip 42.5 1.5E+02 0.0031 22.3 12.6 74 57-133 114-195 (218)
390 TIGR03185 DNA_S_dndD DNA sulfu 42.3 1.7E+02 0.0037 27.0 8.5 20 113-132 266-285 (650)
391 PRK13923 putative spore coat p 42.2 1.7E+02 0.0038 23.2 9.5 38 95-132 111-148 (170)
392 KOG0979 Structural maintenance 42.2 3E+02 0.0065 27.8 10.3 35 56-90 642-677 (1072)
393 KOG1853 LIS1-interacting prote 42.1 2.3E+02 0.0049 24.5 10.3 34 81-114 91-124 (333)
394 KOG4673 Transcription factor T 41.8 2.1E+02 0.0046 28.0 9.0 30 72-101 535-564 (961)
395 KOG0957 PHD finger protein [Ge 41.7 1.5E+02 0.0032 27.9 7.8 52 74-125 445-496 (707)
396 COG4372 Uncharacterized protei 41.5 2.8E+02 0.006 25.3 11.1 68 62-129 125-192 (499)
397 PRK09413 IS2 repressor TnpA; R 41.4 84 0.0018 22.6 5.2 7 18-24 28-34 (121)
398 PF14257 DUF4349: Domain of un 41.2 1.9E+02 0.0041 23.3 8.9 59 74-132 132-192 (262)
399 PF10498 IFT57: Intra-flagella 41.1 2.5E+02 0.0053 24.6 10.9 54 81-134 266-319 (359)
400 KOG1899 LAR transmembrane tyro 40.8 3.5E+02 0.0076 26.3 11.5 10 21-30 83-92 (861)
401 cd07429 Cby_like Chibby, a nuc 40.8 80 0.0017 23.3 5.0 23 103-125 80-102 (108)
402 PF08912 Rho_Binding: Rho Bind 40.5 1.2E+02 0.0026 20.7 6.9 33 79-111 1-33 (69)
403 PF11382 DUF3186: Protein of u 40.4 69 0.0015 27.1 5.2 35 99-133 36-70 (308)
404 PF00769 ERM: Ezrin/radixin/mo 40.3 2.1E+02 0.0045 23.5 11.8 40 70-109 29-68 (246)
405 COG2919 Septum formation initi 40.2 1.3E+02 0.0028 21.9 6.0 29 96-124 58-86 (117)
406 PF10168 Nup88: Nuclear pore c 40.1 3.4E+02 0.0074 25.9 11.5 55 78-132 562-623 (717)
407 PF15619 Lebercilin: Ciliary p 40.1 1.9E+02 0.0041 23.0 9.3 24 103-126 165-188 (194)
408 PF10481 CENP-F_N: Cenp-F N-te 39.9 2.5E+02 0.0054 24.3 8.6 67 54-120 19-92 (307)
409 TIGR01010 BexC_CtrB_KpsE polys 39.8 2.3E+02 0.005 23.9 9.5 16 74-89 177-192 (362)
410 PHA02562 46 endonuclease subun 39.3 2.7E+02 0.0059 24.6 10.7 38 77-114 361-398 (562)
411 KOG3584 cAMP response element 39.1 1.4E+02 0.0031 26.0 6.9 29 98-126 315-343 (348)
412 COG1730 GIM5 Predicted prefold 39.0 1.8E+02 0.0039 22.4 7.5 18 41-58 82-99 (145)
413 PF14988 DUF4515: Domain of un 38.8 2.1E+02 0.0044 23.0 9.4 36 96-131 150-185 (206)
414 TIGR03545 conserved hypothetic 38.5 3.2E+02 0.0069 25.3 9.5 25 65-89 182-206 (555)
415 PF15619 Lebercilin: Ciliary p 38.3 2E+02 0.0044 22.8 10.8 33 64-96 8-41 (194)
416 PF10046 BLOC1_2: Biogenesis o 38.2 1.4E+02 0.0031 21.0 8.2 22 103-124 74-95 (99)
417 PF05812 Herpes_BLRF2: Herpesv 38.0 64 0.0014 24.2 4.1 22 83-104 5-26 (118)
418 PF04880 NUDE_C: NUDE protein, 37.9 75 0.0016 25.0 4.7 17 84-100 27-43 (166)
419 TIGR00414 serS seryl-tRNA synt 37.5 2.9E+02 0.0063 24.4 9.1 20 113-132 73-92 (418)
420 COG1730 GIM5 Predicted prefold 37.4 1.6E+02 0.0035 22.6 6.4 21 112-132 23-43 (145)
421 PF10883 DUF2681: Protein of u 37.4 1.5E+02 0.0032 21.0 6.4 31 97-127 25-55 (87)
422 PF10205 KLRAQ: Predicted coil 37.3 1.6E+02 0.0036 21.5 8.9 46 81-126 26-71 (102)
423 KOG0999 Microtubule-associated 37.3 3.4E+02 0.0073 26.0 9.4 52 77-128 11-62 (772)
424 COG4985 ABC-type phosphate tra 37.1 1.9E+02 0.0041 24.6 7.2 55 76-130 188-242 (289)
425 TIGR02231 conserved hypothetic 37.1 3.1E+02 0.0067 24.5 11.5 76 50-128 81-171 (525)
426 PF15136 UPF0449: Uncharacteri 37.0 1.6E+02 0.0035 21.3 6.3 38 82-119 58-95 (97)
427 COG2919 Septum formation initi 36.9 1.2E+02 0.0025 22.1 5.4 21 79-99 55-75 (117)
428 KOG0976 Rho/Rac1-interacting s 36.7 2.4E+02 0.0052 28.2 8.6 57 75-131 352-408 (1265)
429 PF15079 DUF4546: Domain of un 36.3 1.7E+02 0.0038 23.6 6.6 45 92-136 51-95 (205)
430 PF07851 TMPIT: TMPIT-like pro 36.2 2.9E+02 0.0064 24.1 9.2 25 76-100 6-30 (330)
431 PF10211 Ax_dynein_light: Axon 36.2 2.1E+02 0.0046 22.5 10.3 56 73-128 126-182 (189)
432 PF05701 WEMBL: Weak chloropla 35.9 3.4E+02 0.0073 24.7 10.6 63 65-127 293-355 (522)
433 COG3599 DivIVA Cell division i 35.8 75 0.0016 25.9 4.6 34 74-107 30-63 (212)
434 PRK14160 heat shock protein Gr 35.7 2.4E+02 0.0053 22.9 8.6 24 77-100 71-94 (211)
435 PRK03947 prefoldin subunit alp 35.4 1.8E+02 0.0038 21.3 6.7 7 77-83 9-15 (140)
436 PF09730 BicD: Microtubule-ass 35.3 4.2E+02 0.0091 25.6 12.2 47 76-122 71-117 (717)
437 PF02344 Myc-LZ: Myc leucine z 35.2 97 0.0021 18.2 3.8 21 81-101 8-28 (32)
438 KOG2189 Vacuolar H+-ATPase V0 35.1 4E+02 0.0086 26.2 9.7 63 71-133 53-130 (829)
439 KOG0239 Kinesin (KAR3 subfamil 34.9 4.1E+02 0.0088 25.3 10.8 42 76-117 243-284 (670)
440 TIGR03689 pup_AAA proteasome A 34.9 1.3E+02 0.0028 27.6 6.4 27 77-103 4-30 (512)
441 KOG0976 Rho/Rac1-interacting s 34.8 3.8E+02 0.0081 27.0 9.6 53 73-125 105-157 (1265)
442 TIGR00219 mreC rod shape-deter 34.8 1.9E+02 0.0042 24.1 7.0 15 91-105 69-83 (283)
443 PRK09413 IS2 repressor TnpA; R 34.7 1.1E+02 0.0025 21.9 5.0 13 18-30 39-51 (121)
444 PF06008 Laminin_I: Laminin Do 34.5 2.5E+02 0.0054 22.7 9.9 33 76-108 47-79 (264)
445 PF09755 DUF2046: Uncharacteri 34.1 1.8E+02 0.004 25.2 6.8 23 75-97 42-64 (310)
446 PF00261 Tropomyosin: Tropomyo 34.0 2.5E+02 0.0054 22.6 13.9 65 68-132 163-227 (237)
447 PRK15396 murein lipoprotein; P 33.9 1.6E+02 0.0035 20.4 8.0 33 75-107 26-58 (78)
448 KOG2391 Vacuolar sorting prote 33.8 3E+02 0.0066 24.4 8.2 47 74-120 232-278 (365)
449 PF10046 BLOC1_2: Biogenesis o 33.6 1.7E+02 0.0037 20.5 9.6 26 83-108 23-48 (99)
450 PF09006 Surfac_D-trimer: Lung 33.6 95 0.0021 19.7 3.8 20 113-132 3-22 (46)
451 PF09325 Vps5: Vps5 C terminal 33.6 2.3E+02 0.0049 22.0 8.7 72 58-132 133-212 (236)
452 TIGR02977 phageshock_pspA phag 33.5 2.4E+02 0.0053 22.3 10.6 45 75-119 100-144 (219)
453 KOG2077 JNK/SAPK-associated pr 33.3 2E+02 0.0043 27.6 7.3 47 75-121 330-376 (832)
454 PF15066 CAGE1: Cancer-associa 33.3 2.3E+02 0.005 26.2 7.6 58 79-136 343-403 (527)
455 PF10828 DUF2570: Protein of u 33.1 1.8E+02 0.004 20.7 9.3 52 76-127 34-85 (110)
456 KOG0018 Structural maintenance 32.9 5.5E+02 0.012 26.2 11.1 67 62-128 411-477 (1141)
457 TIGR01461 greB transcription e 32.9 1.9E+02 0.0041 22.1 6.2 57 76-134 10-70 (156)
458 COG4238 Murein lipoprotein [Ce 32.9 1.7E+02 0.0038 20.4 8.0 49 74-122 25-73 (78)
459 PF06103 DUF948: Bacterial pro 32.9 1.6E+02 0.0034 19.9 9.0 57 73-129 32-88 (90)
460 PRK00409 recombination and DNA 32.8 4.6E+02 0.0099 25.2 10.0 60 74-133 520-580 (782)
461 KOG0243 Kinesin-like protein [ 32.7 5.4E+02 0.012 26.1 13.2 64 72-135 446-523 (1041)
462 PF03670 UPF0184: Uncharacteri 32.6 1.8E+02 0.0039 20.5 7.5 38 75-119 34-71 (83)
463 KOG4593 Mitotic checkpoint pro 32.6 1.7E+02 0.0037 28.2 6.9 68 67-134 552-625 (716)
464 PF05384 DegS: Sensor protein 32.4 2.4E+02 0.0052 21.9 8.0 48 83-130 22-69 (159)
465 PF06632 XRCC4: DNA double-str 32.4 3.4E+02 0.0073 23.6 9.5 54 77-130 147-208 (342)
466 PF12795 MscS_porin: Mechanose 32.3 2.6E+02 0.0057 22.3 9.1 51 78-128 154-211 (240)
467 cd07611 BAR_Amphiphysin_I_II T 32.3 2.8E+02 0.006 22.6 7.7 60 68-127 112-176 (211)
468 PRK13923 putative spore coat p 32.2 1.8E+02 0.0039 23.1 6.0 34 74-107 111-144 (170)
469 KOG1103 Predicted coiled-coil 32.2 3.9E+02 0.0084 24.2 10.9 47 81-127 139-185 (561)
470 PF05600 DUF773: Protein of un 32.1 4E+02 0.0086 24.4 10.0 50 71-120 443-492 (507)
471 COG3352 FlaC Putative archaeal 32.1 2.5E+02 0.0055 22.1 8.6 58 73-130 78-136 (157)
472 PRK11546 zraP zinc resistance 31.9 2.4E+02 0.0052 21.7 6.9 48 81-128 54-108 (143)
473 PF09766 FimP: Fms-interacting 31.8 3.4E+02 0.0073 23.5 8.2 45 92-136 105-149 (355)
474 KOG2010 Double stranded RNA bi 31.8 3.7E+02 0.0081 23.9 8.6 49 85-133 151-199 (405)
475 KOG2129 Uncharacterized conser 31.8 3.5E+02 0.0076 24.9 8.4 33 81-113 285-317 (552)
476 COG5570 Uncharacterized small 31.8 1E+02 0.0023 20.2 3.9 50 75-124 6-55 (57)
477 PHA03162 hypothetical protein; 31.7 80 0.0017 24.2 3.8 22 83-104 15-36 (135)
478 PF13094 CENP-Q: CENP-Q, a CEN 31.7 2.2E+02 0.0048 21.3 7.0 49 73-121 40-88 (160)
479 PF12795 MscS_porin: Mechanose 31.6 2.7E+02 0.0058 22.3 8.9 58 76-133 80-137 (240)
480 COG3096 MukB Uncharacterized p 31.6 4.6E+02 0.0099 26.4 9.6 68 70-137 344-411 (1480)
481 PF06657 Cep57_MT_bd: Centroso 31.6 1.7E+02 0.0037 20.0 7.8 56 76-131 19-79 (79)
482 PRK05431 seryl-tRNA synthetase 31.4 3.7E+02 0.008 23.7 11.8 76 58-133 7-97 (425)
483 PF09311 Rab5-bind: Rabaptin-l 31.3 18 0.0004 28.2 0.3 46 77-122 25-70 (181)
484 PF05483 SCP-1: Synaptonemal c 31.3 5E+02 0.011 25.3 9.8 61 73-133 600-660 (786)
485 PHA03155 hypothetical protein; 31.3 78 0.0017 23.7 3.6 22 97-118 10-31 (115)
486 PF06428 Sec2p: GDP/GTP exchan 31.1 55 0.0012 23.6 2.8 88 53-140 1-89 (100)
487 PF10359 Fmp27_WPPW: RNA pol I 31.0 2.7E+02 0.0059 24.9 7.7 61 75-135 164-226 (475)
488 PF10351 Apt1: Golgi-body loca 30.8 3.7E+02 0.008 23.6 10.0 84 47-136 69-156 (457)
489 PF06637 PV-1: PV-1 protein (P 30.7 3.8E+02 0.0082 24.3 8.4 64 74-137 58-121 (442)
490 COG3264 Small-conductance mech 30.6 2.4E+02 0.0052 27.7 7.6 56 73-128 71-126 (835)
491 PF13870 DUF4201: Domain of un 30.6 2.4E+02 0.0053 21.4 10.0 60 74-133 56-115 (177)
492 TIGR03689 pup_AAA proteasome A 30.6 1.4E+02 0.003 27.4 5.9 41 83-123 3-43 (512)
493 PF05103 DivIVA: DivIVA protei 30.5 44 0.00096 23.8 2.2 59 77-135 21-79 (131)
494 PF07926 TPR_MLP1_2: TPR/MLP1/ 30.5 2.2E+02 0.0047 20.8 10.4 67 70-136 13-79 (132)
495 PRK11239 hypothetical protein; 30.5 1.1E+02 0.0024 25.2 4.7 30 75-104 184-213 (215)
496 PF10018 Med4: Vitamin-D-recep 30.5 2.6E+02 0.0056 21.7 9.9 61 74-135 2-62 (188)
497 COG3167 PilO Tfp pilus assembl 30.5 3.1E+02 0.0067 22.5 7.3 52 75-130 43-94 (211)
498 PF06210 DUF1003: Protein of u 30.2 2.2E+02 0.0047 20.7 7.9 52 58-114 55-106 (108)
499 PF08700 Vps51: Vps51/Vps67; 30.1 1.6E+02 0.0036 19.3 9.4 67 72-138 17-87 (87)
500 TIGR01242 26Sp45 26S proteasom 29.9 1.9E+02 0.0041 24.4 6.3 39 91-129 2-40 (364)
No 1
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.53 E-value=2.2e-13 Score=112.10 Aligned_cols=83 Identities=33% Similarity=0.403 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 49 SDDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 49 ~~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
+.|||-.||++|||.+|+-+|.|||+++++++.+|..|..||+.|..+++.|+.+.+.|..+|..|..++..++..|..+
T Consensus 65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 56888899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHH
Q 039918 129 YRI 131 (140)
Q Consensus 129 ~~i 131 (140)
.+.
T Consensus 145 ~~~ 147 (292)
T KOG4005|consen 145 KQQ 147 (292)
T ss_pred HHH
Confidence 653
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.47 E-value=5.4e-13 Score=88.51 Aligned_cols=62 Identities=39% Similarity=0.523 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 50 DDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKEN 111 (140)
Q Consensus 50 ~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN 111 (140)
.|+|+.+|+++||+||++||.||+.|+.+|+.+|..|..+|..|..++..|..++..|..+|
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999998887766666655554
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.44 E-value=1.2e-12 Score=86.63 Aligned_cols=63 Identities=40% Similarity=0.544 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 50 DDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENE 112 (140)
Q Consensus 50 ~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~ 112 (140)
.+.++.+|+++||+||++||.||+.++++|+.+|..|..+|..|..++..|...+..|..+|.
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356789999999999999999999999999999999999999999999999888888888773
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.35 E-value=2.7e-12 Score=114.93 Aligned_cols=66 Identities=36% Similarity=0.383 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 50 DDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLT 115 (140)
Q Consensus 50 ~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr 115 (140)
.--||+.|||+|||||..||+|||+|+..||.++..|..||+.|+.++..|+.++..++.||..|+
T Consensus 278 kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 278 KVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 335888899999999999999999999999999999999999999999999999999999999985
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.22 E-value=3.3e-11 Score=101.52 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 50 DDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 50 ~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~ 104 (140)
.--||+-|++||||+||.||+|||+|+.+||.+|+.|+.+|..|-.++..|++-|
T Consensus 288 ~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 288 ATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred hhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 3347777999999999999999999999999999999999999999998887654
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.18 E-value=2.2e-10 Score=73.78 Aligned_cols=52 Identities=42% Similarity=0.630 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 50 DDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 50 ~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
+|+++.+|. +||+||++||.||+.++.+|+.+|..|..+|..|..++..|..
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777888 9999999999999999999999999999999999888877653
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.96 E-value=1.1e-09 Score=96.65 Aligned_cols=69 Identities=29% Similarity=0.378 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
-||-||+|+|.+||+.||+|||.|++.||.+|....++|+.|..++.. |+.+|..|-+++..|++.+..
T Consensus 250 LKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~-------Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 250 LKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE-------LELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH-------HhhccHHHHHHHHHHHHHHhh
Confidence 367789999999999999999999999999999999999999987655 567777777777777766543
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.14 E-value=2.3e-08 Score=70.75 Aligned_cols=52 Identities=33% Similarity=0.457 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
-|..||..+||.+|+.||.||..++++|+.++..|..+...|..++..+...
T Consensus 29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e 80 (92)
T PF03131_consen 29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQE 80 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999998887766666655554433
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.87 E-value=7e-05 Score=62.67 Aligned_cols=50 Identities=28% Similarity=0.428 Sum_probs=43.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 55 KRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 55 ~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~ 104 (140)
.|..+.||++|.+||.||-+|+..|+.+|..|..+|..|...+..|.++.
T Consensus 208 eRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v 257 (279)
T KOG0837|consen 208 ERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQV 257 (279)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 44589999999999999999999999999999999999888876665544
No 10
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.81 E-value=0.00046 Score=52.49 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=56.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 53 RKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 53 Rr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
|-+||-+|||=-|+-+|-|+...-++||.+-..|..+ ++.|..||++++.++..+..++..+....
T Consensus 53 KQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qq--------------v~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 53 KQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQ--------------VEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5567899999999999999999888888776665543 45566778888899999999998887776
Q ss_pred HhccCC
Q 039918 133 GSMQTP 138 (140)
Q Consensus 133 ~~~~~~ 138 (140)
....+.
T Consensus 119 ~~~~~~ 124 (135)
T KOG4196|consen 119 VSVGAS 124 (135)
T ss_pred hhccCC
Confidence 654443
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.54 E-value=0.001 Score=56.47 Aligned_cols=50 Identities=32% Similarity=0.375 Sum_probs=37.4
Q ss_pred hHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 50 DDERKKRR-MISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 50 ~eeRr~RR-~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~ 99 (140)
.++++.+| .+.|..+|-|=|+||++..+.|..++..|..+|.+|+.++..
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ 273 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASE 273 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554 677777799999999999998888887777777666665444
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.50 E-value=0.00062 Score=56.68 Aligned_cols=50 Identities=24% Similarity=0.404 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 50 DDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 50 ~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~ 99 (140)
.+.+-..|+.+|-+++++||.+.+...+++..+|..|..||..|+.++..
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~ 240 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQ 240 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999999999998877777777766665555554433
No 13
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.0069 Score=41.90 Aligned_cols=55 Identities=29% Similarity=0.284 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
-+.-|.-+|..|..+|..|..+...+......|+.||..|+.+-...+.+|..|.
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778899999999999999999999999999999999999999998887653
No 14
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.82 E-value=0.0032 Score=57.97 Aligned_cols=47 Identities=26% Similarity=0.286 Sum_probs=41.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 54 KKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 54 r~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
--||+=|||.||+++|+||-..+..||..|..|+.+-++|..+-..+
T Consensus 491 DIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~ 537 (604)
T KOG3863|consen 491 DIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDEL 537 (604)
T ss_pred ccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999988888765444
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.81 E-value=0.037 Score=37.92 Aligned_cols=54 Identities=37% Similarity=0.391 Sum_probs=35.3
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELN-------RSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 76 leeLe~~v~-------~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
++.|+.+|. .|+.+|..|+.++..+......|..||..|+.+...+..+|..+-
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555 455566666666666666677777777777777777777776553
No 16
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.71 E-value=0.018 Score=40.33 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
-+.=|.-+|+.|+.+|..|..++..+......|..||..|+.+...+..+|..|--
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557788888999999999999988888999999999999999999999877643
No 17
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.64 E-value=0.027 Score=38.09 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
..|+.+|..|-.....|+.++..|..+...+..|+..|.++...-+.++..|-.=|.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555555555555555555555555555555555555555443333
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.60 E-value=0.064 Score=36.74 Aligned_cols=53 Identities=19% Similarity=0.126 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
..+.-|+.++..|+.+|..|..++..|......+..+-......+..|=.++.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566777777777777777777777777777777666666666655555443
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.49 E-value=0.06 Score=36.40 Aligned_cols=57 Identities=32% Similarity=0.324 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
..++.|-..+..|+.||..|+.++..+......|...|..-+.++..+-.+|..|.+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 568889999999999999999999999999999999999999999999999988754
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.49 E-value=0.041 Score=43.20 Aligned_cols=60 Identities=23% Similarity=0.217 Sum_probs=51.3
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTE---ELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 74 ~~leeLe~---~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
..+..|.. ....+..||..|..++..|..++..|..||..|..++..+..-+..|-.||.
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555553 4778889999999999999999999999999999999999999999888875
No 21
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.32 E-value=0.039 Score=40.44 Aligned_cols=49 Identities=31% Similarity=0.300 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.++..+...-..|..++..|+.+...+..||..|+-|...|+.+|..+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555555556666666666666666666665543
No 22
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.23 E-value=0.024 Score=35.61 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 85 RSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 85 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
+|+.+-..|+.....|...+..|..||..|++++..|..++.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666677777777888888888888888888888887764
No 23
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.92 E-value=0.064 Score=39.29 Aligned_cols=50 Identities=28% Similarity=0.343 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
..+..|+.++..+-.+-..|+..+..|.+....|..||..||..+..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999988755
No 24
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.84 E-value=0.17 Score=34.38 Aligned_cols=56 Identities=30% Similarity=0.387 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
+.+++.+..++.....+|..|..+......++...-.+|..|++++..|+..|...
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888888888888888899999999999998887654
No 25
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.80 E-value=0.075 Score=39.24 Aligned_cols=47 Identities=30% Similarity=0.338 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
.+..|+.++..+-.+-..|+..+..+.+....|..||..||..+..+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555555555555544444443
No 26
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.74 E-value=0.11 Score=38.44 Aligned_cols=53 Identities=30% Similarity=0.305 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.+|=.++..+...-..|..++..|......+..||..|+-+...|+.+|..+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667899999999999999999999999999999999999999999999763
No 27
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=95.53 E-value=0.24 Score=34.12 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCY--------LLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~--------~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
+.+.+..++.|..||=.|+-++-.|.++.. .+..+|-.|+.++..|+..|......|.-.+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999987776 4578999999999999999988887776543
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.40 E-value=0.21 Score=40.38 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.........|..+|+.|++++..++.++..+..
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555554444433
No 29
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.84 E-value=0.18 Score=37.50 Aligned_cols=47 Identities=28% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
.+|..|....-.|..++..+.++...+..||..|+-+...|+.+|+.
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34555555555666677777777888888888888888888888876
No 30
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.72 E-value=0.37 Score=38.89 Aligned_cols=59 Identities=25% Similarity=0.239 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
..+|-..|+.|..-|++|..++..|......++..|+.|..++..|+..+..+.+.+..
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~ 61 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK 61 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888889999999999998888889999999999999999888888777654
No 31
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.71 E-value=0.28 Score=41.03 Aligned_cols=58 Identities=26% Similarity=0.237 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
+..++++..+-..|..+|..|..++..+++++..++.||+.|......|-..+.+|..
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 4556777777777888888888888888999999999999998877777666666543
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.29 E-value=1.6 Score=40.24 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=65.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 55 KRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 55 ~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
...+++-..........-+.+++.|+..+...+.++..|..+...+......+..|+..|..+...+..++..+.+-|..
T Consensus 152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~ 231 (546)
T PF07888_consen 152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKT 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466666666667777778888888888888888888888888888888888999999999888888888888877765
Q ss_pred c
Q 039918 135 M 135 (140)
Q Consensus 135 ~ 135 (140)
|
T Consensus 232 l 232 (546)
T PF07888_consen 232 L 232 (546)
T ss_pred H
Confidence 5
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.10 E-value=1.1 Score=42.22 Aligned_cols=63 Identities=21% Similarity=0.090 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
+.-+-+..+..+|+.|-..|+.++....+++..++.|...|+....+-......|...|..||
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amq 600 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQ 600 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 444557778888888888888888888888888888887777653333334555556666665
No 34
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.03 E-value=1.6 Score=32.72 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=64.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 53 RKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 53 Rr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
....|=..-|+..-....++...++.|...+..|..++..+..++..+......+..++..+...+......+..+...+
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667788888888888888888999999999888888888888888888888888888777777777776666555
Q ss_pred Hh
Q 039918 133 GS 134 (140)
Q Consensus 133 ~~ 134 (140)
..
T Consensus 125 ~~ 126 (151)
T PF11559_consen 125 QQ 126 (151)
T ss_pred HH
Confidence 43
No 35
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.97 E-value=1.7 Score=32.11 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 68 SRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 68 SR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
|+.-.+..+-.|+..+.........|..+-..|......|..+|..+-..+..|++++.++..-|
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666666666666666666666666666666666666666666654443
No 36
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.88 E-value=1.4 Score=32.90 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039918 110 ENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 110 EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
+...|+.++..|..++..+.++
T Consensus 69 ~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 37
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.81 E-value=0.76 Score=39.54 Aligned_cols=54 Identities=28% Similarity=0.367 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
+.|...++.|+.+|..|+.++.....++..|..+|..|+.....+..+...-.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE 76 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEE 76 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999999888888777655433
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.77 E-value=0.76 Score=37.10 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
..+......++.|..+|+.|+.++..++.+...+..+|..++.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555444555444443
No 39
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.58 E-value=0.29 Score=44.28 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
+...++||.+++.|+.+.+.+......+.+++..++.||..|+.++..+..
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 457889999999999999999999999999999999999999999865543
No 40
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.54 E-value=2.9 Score=32.79 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=30.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 57 RMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 57 R~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
.....+.+-+.-.......+.+...-+..|..|...|.-++..+..++..+..||..|-.+.
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444445555555555555555555555555555555555555554443
No 41
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=93.52 E-value=0.82 Score=38.11 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
+|.+-.+.....++..-..=+.....+..+...|+.||..|+.++..|+..+..+.+++....
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~ 256 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLP 256 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444444444444444555778889999999999999999999999999999987643
No 42
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.15 E-value=0.51 Score=29.54 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 93 LKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 93 L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
|-.....|...|..|..+|..|..+...|++.+..+...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566778888888888888888888888888888876654
No 43
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.11 E-value=3.1 Score=31.88 Aligned_cols=82 Identities=26% Similarity=0.194 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
+|-..-...|.+.+-.-=.-+++.+..|+.++..+..+...|..++..++.....|..+-...+.++..|.....++...
T Consensus 30 EreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 30 ERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455567777777777777778888888888888888877877777777777777766667777777776666666555
Q ss_pred HH
Q 039918 132 LG 133 (140)
Q Consensus 132 l~ 133 (140)
|.
T Consensus 110 l~ 111 (140)
T PF10473_consen 110 LQ 111 (140)
T ss_pred HH
Confidence 54
No 44
>PRK11637 AmiB activator; Provisional
Probab=93.06 E-value=4.1 Score=35.49 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 68 SRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 68 SR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.....+..+.+++.++..+..+...+..++..+..++..+..+-..|..++..++.++.....
T Consensus 62 ~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 62 SVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555555555555555555555555555555555555555555555544433
No 45
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.01 E-value=0.77 Score=40.28 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 68 SRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 68 SR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
-=.|-+.+...||.-+.+++.||+.|.-+++.+.+.|...+.|+..|..|+.+-.+.-+.
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~ 180 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQE 180 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888999999999999999999999999999988887666555444333
No 46
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.98 E-value=3 Score=31.26 Aligned_cols=60 Identities=25% Similarity=0.242 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.|=..+.+.|..++..+..++..|...+..|..++..+..+...+......+...+..+.
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555554444444444444443
No 47
>smart00338 BRLZ basic region leucin zipper.
Probab=92.78 E-value=0.68 Score=30.16 Aligned_cols=38 Identities=32% Similarity=0.301 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 95 NELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 95 ~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
..+..|..++..|..+|..|+.++..|...+..+..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777888888888888888888888888887765
No 48
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=92.40 E-value=0.84 Score=33.94 Aligned_cols=47 Identities=28% Similarity=0.290 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVA 120 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~ 120 (140)
..+.+|+.++..+-++...|+..+..+.+....|.-||..||..+..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999999876
No 49
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=92.33 E-value=1.8 Score=30.28 Aligned_cols=45 Identities=24% Similarity=0.175 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
++|..++..|+..-..|..++..+...+..|..||..|..=+..|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666666666555555444
No 50
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=92.25 E-value=0.28 Score=38.63 Aligned_cols=52 Identities=31% Similarity=0.405 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
++++|.++++.-..|.-|..++. +-..|..++++||.|+..|+..| .+.+.+
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 78999999999999999999883 35667788888888888887777 554433
No 51
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=92.18 E-value=2.7 Score=35.41 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 80 TEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 80 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
..+.+.+..+...|..++..|...+..|...|..|-.+-.+|..+|..+++-|+-
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3556667777777777777777777777777777777888888888877776653
No 52
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.15 E-value=1.2 Score=34.14 Aligned_cols=54 Identities=30% Similarity=0.326 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQC--YLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~--~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
+.+|..++..|..++..|..++..|.... ..+..+...|+.++..|..+|..+.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555544443221 3344444445555555555554443
No 53
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.12 E-value=3.8 Score=30.52 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 039918 116 SEYVALRTRLSNLYRI 131 (140)
Q Consensus 116 ~e~~~L~~~l~~l~~i 131 (140)
+++.+|+.-+.++..+
T Consensus 96 E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 96 EEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555443
No 54
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=92.09 E-value=1.5 Score=37.52 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
+=+.+-+.+.-+++.|+.+|.+||.++.+|...+..|.++|-.++
T Consensus 245 KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 245 KKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778889999999999999999999999999999987654
No 55
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.98 E-value=2.5 Score=29.71 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
+-++.|+.+|...-....-|.-++..|.++...+..|+..++..-..|...
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~e 54 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 346788888888888888888888888888888888777744444444433
No 56
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=91.77 E-value=3 Score=30.11 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIV--LNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l--~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
+..++.|...+......-..+..++..+ ....+.|..+=..++.++..+..++..+.+.+..
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444445444444444444444444444 4455555555666666666666666666555543
No 57
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.68 E-value=5 Score=32.53 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+.+..+...|..+...|..++..+......+...-..++.++..|..++
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI 93 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333
No 58
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=91.62 E-value=0.58 Score=39.18 Aligned_cols=37 Identities=30% Similarity=0.202 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCY----LLWKENEQLTSE 117 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~----~l~~EN~~Lr~e 117 (140)
..+..|..||.+|+.++..+..+.. .+..||.+||+-
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677888888888766643333 266677776663
No 59
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=91.53 E-value=0.68 Score=30.02 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
|+..++++|+.++..=+ +.=...-......+..+..||..|++++..++.
T Consensus 1 kw~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777665533 122223345667788889999999999887654
No 60
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.43 E-value=6.1 Score=32.04 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSE 117 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e 117 (140)
-.+.+..|..+++.|+..|..|...+.........|..+...+..-
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555444444433
No 61
>PF15294 Leu_zip: Leucine zipper
Probab=91.26 E-value=1.3 Score=37.61 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
|..++..|+.||..|+.++..+..+|.....|+..|..++..|+....
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~ 177 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQG 177 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999999988443
No 62
>smart00340 HALZ homeobox associated leucin zipper.
Probab=91.20 E-value=0.65 Score=29.11 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 97 LNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 97 ~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
...|...|..|..||.+|..++.+|++
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778899999999999999999875
No 63
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.11 E-value=2.8 Score=35.63 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQT 137 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~ 137 (140)
..|+.+...+..|..+|..++.+.......+..+..|+..+..++..+..++..|..+...||.
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677888888999999999999999999999999999999999999999999999999888885
No 64
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.07 E-value=1.9 Score=39.05 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLW-KENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~-~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
.+..|..+-+.|..||+.|+.+...+..+..... .+...|..+...|...++.+...|.
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~ 133 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLID 133 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777766665554444333 5455555555555444444444433
No 65
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=90.98 E-value=1.1 Score=39.23 Aligned_cols=54 Identities=26% Similarity=0.247 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcc
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLT----SEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr----~e~~~L~~~l~~l~~il~~~~ 136 (140)
.+...|+.||..|+.++..|+.+.+.| ||..|+ ..+.........+..|+.-|+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~s~V~E~vet~dv~~d~i~Kimnk~R 89 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERL--ENEMLRSHVCEDVETNDVIYDKIVKIMNKMR 89 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 456678889999999999998888888 666775 222333444444555555443
No 66
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.72 E-value=3.1 Score=32.67 Aligned_cols=53 Identities=28% Similarity=0.390 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+..+..|+..+.....-|+.|..++..|.-++..++.....|..+-..|-.|+
T Consensus 129 ~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 129 EEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555554
No 67
>PRK11637 AmiB activator; Provisional
Probab=90.47 E-value=7.5 Score=33.90 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 64 SARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 64 SArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
..+.....-...+..|+.++..+..+-..+..++..+..+...+..+-..++.++..++..|...
T Consensus 65 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 65 QQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556777788888888888888888888888888877777777777776666555444
No 68
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.44 E-value=4.6 Score=28.26 Aligned_cols=63 Identities=25% Similarity=0.266 Sum_probs=47.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 74 KQLEDLTE-ELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 74 ~~leeLe~-~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
..++.++. .-+.|..+-..|...+..|..++..+..||..|+.+-.-|...+.+|..--...+
T Consensus 8 ~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~~ 71 (80)
T PF10224_consen 8 EDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVFQ 71 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444443 3667778888888888888999999999999999999999998888855443333
No 69
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=90.33 E-value=2.1 Score=27.81 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 94 KNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 94 ~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
+..+..|...+..|..+|..|+.++..|...+..|..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666667777777777777777777777766654
No 70
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.24 E-value=4.1 Score=34.53 Aligned_cols=60 Identities=23% Similarity=0.226 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
..+..+..++..+..+....+.++..+..+...+..+-..+.++..++...+..+.+++.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777777777777777777777777777777777776664
No 71
>PRK02119 hypothetical protein; Provisional
Probab=90.24 E-value=4.3 Score=27.63 Aligned_cols=49 Identities=6% Similarity=0.043 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.++.+||.+++.... -+..|..-...-..+...|+.++..|..+|.++.
T Consensus 9 ~Ri~~LE~rla~QE~-------tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 9 NRIAELEMKIAFQEN-------LLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555555544 4444444444444555666667777766666643
No 72
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=90.05 E-value=2.2 Score=33.25 Aligned_cols=56 Identities=27% Similarity=0.321 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
..+|..+|..|+.+|..|...+..+..+...+......|+.+...++.+-..+.+.
T Consensus 91 ~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~ 146 (158)
T PF09744_consen 91 RKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRK 146 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888988888888888888888888888888888888877666443
No 73
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.04 E-value=2.8 Score=28.35 Aligned_cols=40 Identities=25% Similarity=0.174 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVA 120 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~ 120 (140)
.....|..|+......+...-..+..|..||..|+.++..
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444333
No 74
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.00 E-value=3.8 Score=37.84 Aligned_cols=62 Identities=24% Similarity=0.333 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 64 SARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 64 SArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
.|.+.+.--...+.+....+..++++...++..+..+......|..||.+|+.++..++..|
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33334444445566667777788888888888888888888888888888888888877644
No 75
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.93 E-value=3.9 Score=31.23 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNEL--NIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~--~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
-+..+.+|...+..|..+...|.... ..+......+..|+..|..++..|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667777777777777777777665 56667777777777777777777765
No 76
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=89.82 E-value=2.8 Score=27.98 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
.++.+||.+++.+..-...|...+..-...+..|..+...|..++..+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888888888777777777666665555555555555554444443
No 77
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.74 E-value=3.7 Score=35.02 Aligned_cols=30 Identities=20% Similarity=0.056 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 102 NQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 102 ~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
++...|+.+|+.+++....|+..+..|.+.
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567788888888888888877777654
No 78
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.23 E-value=5.7 Score=33.55 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
.+...+.+++..+..++.+...|..++..+..+...+..++..+.+++..|...+..+..=|.
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777777777777777777777777777777777777766666654443
No 79
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.19 E-value=7.1 Score=29.62 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
...+.++.++..|..+|..+-.++..|..+...++.+-..+...+..+...+...
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455566666666666665555555555555555555555555554444444433
No 80
>PRK04406 hypothetical protein; Provisional
Probab=88.71 E-value=5.9 Score=27.14 Aligned_cols=52 Identities=8% Similarity=0.041 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.++.++..|+......-.-+..|..-...-..+...|+.++..|..+|..+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555544444455555555555555555777777777777776543
No 81
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=88.52 E-value=0.031 Score=48.77 Aligned_cols=56 Identities=20% Similarity=0.158 Sum_probs=47.3
Q ss_pred CcCCChHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 039918 45 RAVYSDDERKKRRMISNRESARR---SRWRKKKQLEDLTEELNRSA-VENQVLKNELNIV 100 (140)
Q Consensus 45 ~~~~~~eeRr~RR~~sNReSArr---SR~RKk~~leeLe~~v~~L~-~eN~~L~~~~~~l 100 (140)
.....++.++..|+..|+.+|.. +|.+++.+...|..+|+.|. ..|..|..++..|
T Consensus 146 ~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~L 205 (395)
T KOG1414|consen 146 VLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPL 205 (395)
T ss_pred CCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccc
Confidence 33467888999999999999999 99999999999999999999 7777755555444
No 82
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=88.47 E-value=4.6 Score=29.86 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 039918 96 ELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQTP 138 (140)
Q Consensus 96 ~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~~ 138 (140)
-+..|.++...+..||-.||.+-..|-+.+.+|...-...|++
T Consensus 71 TLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVFQst 113 (120)
T KOG3650|consen 71 TLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQST 113 (120)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhcC
Confidence 3344444445555555555555555556666665555555543
No 83
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.38 E-value=8.7 Score=29.15 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
....++..+...+..|-.++..+...+..|...|..|..++..+...|..+.
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444443
No 84
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=88.23 E-value=2.4 Score=30.66 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
+.+.+++.++..++.+|..|..++..|
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444333
No 85
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=88.17 E-value=6.6 Score=30.06 Aligned_cols=62 Identities=26% Similarity=0.244 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
++++|-.+++.|+.-......++......+.+|..|-..|..+...|..-|..-..++..+|
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLq 68 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQ 68 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 57888899999998888888888888888889999999998888888777776666666555
No 86
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.74 E-value=8.6 Score=30.29 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
...+..+...|+.++..|..++..|...+..|..+...+......|-.-+...++++
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555556666666666666666655555554443
No 87
>PRK04325 hypothetical protein; Provisional
Probab=87.67 E-value=6.9 Score=26.65 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
++.+||.+++..+.-...|...+. .-..+...|+.++..|..+|.++.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~-------~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVA-------RQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366666666665555555544443 334444666677777777776653
No 88
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.63 E-value=13 Score=29.69 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=46.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 53 RKKRRMISNRESARRSRWRKKKQLEDLTEELNRS-------AVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 53 Rr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L-------~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+-.+.++....+-+-.+.+...+...++.++..- ..+-..|..++..++++...+..++..-..++..|....
T Consensus 89 ~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~ 168 (190)
T PF05266_consen 89 KFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEA 168 (190)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888888888777755 444444555555555554444444444444555554444
Q ss_pred HHHHH
Q 039918 126 SNLYR 130 (140)
Q Consensus 126 ~~l~~ 130 (140)
..+.+
T Consensus 169 ~~l~~ 173 (190)
T PF05266_consen 169 EALKE 173 (190)
T ss_pred HHHHH
Confidence 44443
No 89
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=87.61 E-value=1.9 Score=35.21 Aligned_cols=34 Identities=29% Similarity=0.140 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 039918 84 NRSAVENQVLKNELNIVLNQC---YLLWKENEQLTSE 117 (140)
Q Consensus 84 ~~L~~eN~~L~~~~~~l~~~~---~~l~~EN~~Lr~e 117 (140)
..+..||..|+.++..+..+. ..+..||.+|+.-
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333 2556666666653
No 90
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=87.50 E-value=7 Score=26.57 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
|-+.+..|-.+-..|......+...+..|+.+...++.+...|+..+..+...+..+...+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667777777777777777777777777777777777777777777777777777766553
No 91
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=87.49 E-value=0.9 Score=30.23 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 89 ENQVLKNELNIVLNQCYLLWKENEQLTSE 117 (140)
Q Consensus 89 eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e 117 (140)
|...|+.++..|..+...|+.||..||+-
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44456666666666666777777777654
No 92
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=87.36 E-value=0.14 Score=44.82 Aligned_cols=48 Identities=31% Similarity=0.335 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 47 VYSDDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLK 94 (140)
Q Consensus 47 ~~~~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~ 94 (140)
-..+++++.+=.++||.+|-++|.|||.....|+.....+..+|..|.
T Consensus 279 ~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 279 DEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred CCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 346677775559999999999999999999999999999999998887
No 93
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.25 E-value=8.5 Score=33.15 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 039918 112 EQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 112 ~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
..|.+++..|+.++..+..+|.-
T Consensus 272 ~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 272 RQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555543
No 94
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=87.11 E-value=6.5 Score=26.21 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
++.++..|+.....+-.-+..|..-...-..+-..|+.++..|..+|.++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678899999988888888888888888888888888888888888888775
No 95
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=86.89 E-value=8.7 Score=27.03 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
.++..+.+.+=|++=..|.-+.....+++.++..|......|-.++.....++..|+.-|..+...+...-..+.
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777788888887777777777799999999999999999999999999999999999888877766554443
No 96
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.74 E-value=7.2 Score=25.92 Aligned_cols=44 Identities=27% Similarity=0.298 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
+..++...+..|..+.+++.....+...|..+-..|+.++.+++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555566666666665555555555555455555444444
No 97
>PRK02793 phi X174 lysis protein; Provisional
Probab=86.10 E-value=8.4 Score=26.08 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
+++.+||.+++....-...|... ...-..+...|..++..|..+|..+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~-------v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVT-------VTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556666666555544444444 34444445666677777777776653
No 98
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.06 E-value=7.1 Score=37.44 Aligned_cols=64 Identities=27% Similarity=0.293 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
.||+..+..+..++..+..++..++..+..+...+.....++..|.+++..|+.+|...+..+.
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3566788888888888888888888888888888888888888888888888888877766554
No 99
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=86.04 E-value=16 Score=31.53 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 62 RESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 62 ReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
-|+++|--.-.+.++.+++.-...=+..-.....+-..+.+++.++..||-.|++++...+.+...-..++--+|
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ 255 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQ 255 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 567777777778888888877776666667777788889999999999999999999999888877665554444
No 100
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=85.99 E-value=4 Score=38.45 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.+|-++|+.|..||..|+.++...+.....|+..+..|.+++..+++.+-+.++
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~ 378 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ 378 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999988889999999999999998888877644
No 101
>PRK00846 hypothetical protein; Provisional
Probab=85.68 E-value=9.8 Score=26.44 Aligned_cols=51 Identities=10% Similarity=-0.050 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
++.++..|+......-.-+..|.........+...|+.++..|..+|.++.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444444555555555556666777777777777777764
No 102
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.66 E-value=7.7 Score=32.61 Aligned_cols=53 Identities=25% Similarity=0.250 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
++..+++..++..+..+|..|..++..+...+..+...-.+|+.+...|...+
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666667777777777666666666555555555555554444433
No 103
>PRK02119 hypothetical protein; Provisional
Probab=85.42 E-value=8.9 Score=26.07 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 96 ELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 96 ~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
++.....-+..|...-..-..++..|+.+|..|.+=|..++
T Consensus 17 rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 17 KIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555555544444555666777777777766666554
No 104
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.33 E-value=10 Score=30.72 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
|..++..|+.+|..|..+...+..++..|..+|..|+-++-..
T Consensus 100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~ 142 (193)
T PF14662_consen 100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEF 142 (193)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4445555555555555555555555555555555554444333
No 105
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=85.04 E-value=7.4 Score=26.05 Aligned_cols=44 Identities=25% Similarity=0.199 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 88 VENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 88 ~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
.....+..++..+..+...+..||..|+.++..|.+ ...+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~A 67 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIA 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHH
Confidence 344556666666677777777777777777777754 33344433
No 106
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.94 E-value=14 Score=31.91 Aligned_cols=60 Identities=23% Similarity=0.244 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
.+.+|+.++..+..||..|...+......-..|..|...|+.+..+....|....+=|..
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666666666666666666666666666666666555544433
No 107
>PRK00295 hypothetical protein; Provisional
Probab=84.94 E-value=9.3 Score=25.57 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
+++.+||.+++....-...|...+..- ..+...|+.++..|..+|.++.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Q-------q~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQ-------QRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 347777777777766555555544443 4444666677777777776654
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=84.62 E-value=22 Score=29.57 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=49.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 039918 53 RKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVL---------NQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 53 Rr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~---------~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
+-.+.+..-.+.++..=.-++..+++++.+|..++.+-+.+..++..+. .++..|..|-..++.+...|..
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~ 110 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLED 110 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666777777777777777777777766666554 4455555566666666666666
Q ss_pred HHHHHHHHH
Q 039918 124 RLSNLYRIL 132 (140)
Q Consensus 124 ~l~~l~~il 132 (140)
.|.++...+
T Consensus 111 el~~l~~~~ 119 (239)
T COG1579 111 ELAELMEEI 119 (239)
T ss_pred HHHHHHHHH
Confidence 666555443
No 109
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=84.62 E-value=10 Score=26.29 Aligned_cols=47 Identities=30% Similarity=0.259 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 86 SAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 86 L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
...+...+..++..+..+...+..||..|+-|...|.+ ...+.++..
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~-~~rIe~iA~ 79 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS-PSRIERIAR 79 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHH
Confidence 44566777788888888888899999999999888854 444444444
No 110
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.13 E-value=18 Score=32.84 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
..+.++.++..|..+|..|+..+..|...+..+..+-.++-.++..++.++....+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~ 353 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQK 353 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999999998888888888888766544
No 111
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.04 E-value=13 Score=31.63 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
.+...+.++...+.+-..+..++..+..++.....+...|..++.....+|.....++..+
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL 289 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh
Confidence 4455555666666666666677777777777888888888888888888888888877654
No 112
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=83.80 E-value=2.3 Score=31.92 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
|..-+++|..++..|+-||..|+.++..-.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 445789999999999999999999886543
No 113
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.38 E-value=26 Score=30.99 Aligned_cols=70 Identities=29% Similarity=0.308 Sum_probs=48.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 039918 53 RKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIV--------------LNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 53 Rr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l--------------~~~~~~l~~EN~~Lr~e~ 118 (140)
-|.|.+.-|-|.-|..| +-+++=+.+..+|+..|++|++++..+ ..-.+.+..||..|..++
T Consensus 75 ~kirk~~e~~eglr~i~----es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 75 TKIRKITEKDEGLRKIR----ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455666667766666 456666677778888888888776544 345566778888888888
Q ss_pred HHHHHHHH
Q 039918 119 VALRTRLS 126 (140)
Q Consensus 119 ~~L~~~l~ 126 (140)
.++...+.
T Consensus 151 ~~l~~e~~ 158 (401)
T PF06785_consen 151 DALQQECG 158 (401)
T ss_pred HHHHHHHh
Confidence 77766663
No 114
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.88 E-value=5.9 Score=28.63 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 90 NQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 90 N~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
...+..++..+..+...+..+|..|+.++..|+.--..+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyi 67 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAI 67 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH
Confidence 344555555555555666666666666666665533333
No 115
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.76 E-value=18 Score=28.65 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 80 TEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 80 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
..+.+.|..-|.-|+.++.........|..++..|..+...++
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~ 115 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLR 115 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333333334444333333333
No 116
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=82.65 E-value=16 Score=31.80 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
+..|..++.+|..+|..|..+...+..++..+..+...+
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~ 177 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEH 177 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666555544
No 117
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=82.52 E-value=7.6 Score=25.33 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
.+.+|+.+++.+..+|..|..++..+
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444333
No 118
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.39 E-value=6.8 Score=32.17 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
..+..+...+..|-++|.++...|+.
T Consensus 182 ~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 182 DALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 119
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=82.21 E-value=8.4 Score=27.33 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 84 NRSAVENQVLKNELNIVLN------QCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 84 ~~L~~eN~~L~~~~~~l~~------~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
..+..+|..|..++..|+. .......||-+|+.++..|+...
T Consensus 20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777764 44567889999999998888766
No 120
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=82.16 E-value=11 Score=24.60 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 90 NQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 90 N~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
...+..++..+..+...+..+|..|+.++..|+.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455566666667777777777777777777733
No 121
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=81.87 E-value=1.9 Score=26.92 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
...+-..|..+..++..+...+..|..||..||+.+.
T Consensus 9 n~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 9 NRELAKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3445556666777777777777777777777776653
No 122
>PRK02793 phi X174 lysis protein; Provisional
Probab=81.76 E-value=14 Score=25.06 Aligned_cols=51 Identities=22% Similarity=0.057 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
++.++..|+. ++.....-+..|...-.....++..|..+|..|.+=|..+.
T Consensus 6 ~e~Ri~~LE~-------~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELES-------RLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445544444 33333333333444444445566777777777766555554
No 123
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=81.74 E-value=14 Score=25.07 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
.|...+.+|...|..|...+..-..++..+......-.+....|+-.+..
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~y 51 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKY 51 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 46777888888888888888888888888888777777777777655543
No 124
>PF15058 Speriolin_N: Speriolin N terminus
Probab=81.33 E-value=3.8 Score=33.28 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSE 117 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e 117 (140)
.++|.++++.|..||++|+..+.. ..||..||.=
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrL--------irEN~eLksa 40 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRL--------IRENHELKSA 40 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHH
Confidence 577888999999999999887654 4567777654
No 125
>PHA03162 hypothetical protein; Provisional
Probab=81.25 E-value=1.3 Score=33.93 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVENQVLKNELN 98 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN~~L~~~~~ 98 (140)
+++.-+++|..++..|+-||..|+.++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999983
No 126
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.99 E-value=19 Score=33.32 Aligned_cols=53 Identities=28% Similarity=0.304 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNEL-------NIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~-------~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
..|+.++..|+.++..|..++ ..|..++..+...+..|..+...|...+..+.
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~ 219 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEAR 219 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433 33444444444444455555555555555443
No 127
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.75 E-value=17 Score=31.16 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 49 SDDERKKRRMISNRESARRSRWRK--KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 49 ~~eeRr~RR~~sNReSArrSR~RK--k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
..++|.++=|++| |+.==.|- .-.++-|...+..++.....|..++......+..+......|+.++..|+..|.
T Consensus 88 evEekyrkAMv~n---aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 88 EVEEKYRKAMVSN---AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHH---hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888 22211111 122333333333333333333333333333333344444444445555554444
Q ss_pred HHHHHH
Q 039918 127 NLYRIL 132 (140)
Q Consensus 127 ~l~~il 132 (140)
...++|
T Consensus 165 ~rdeli 170 (302)
T PF09738_consen 165 QRDELI 170 (302)
T ss_pred HHHHHH
Confidence 444433
No 128
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.72 E-value=32 Score=30.93 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 53 RKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 53 Rr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
+++.-+.++=+.-..+....+.....|+.+++.++.+...+..++.........+...++.+...+..|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555666667777777777777777777777666666555555555555555555553
No 129
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.71 E-value=26 Score=32.67 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
..+.+++|+.++..+..+-..+..++..+...+..+..+....+.+...+...+.-..+++..+
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL 389 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELL 389 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666666666666666666666666666666666666665555554443
No 130
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=80.46 E-value=21 Score=26.89 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 66 RRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 66 rrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
.+-+.=-...+.+|+.++..|..+--.=...+..+-.+.+.+..++..|..-+..|..+|.
T Consensus 6 ~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLR 66 (120)
T PF10482_consen 6 NKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLR 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444456777888888887776666666677767777777777777777777777664
No 131
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.42 E-value=37 Score=35.95 Aligned_cols=59 Identities=27% Similarity=0.275 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
+..+.....+.++...|...+..+..+...+..+|..|..++..|...+.++..-+..+
T Consensus 1459 d~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~el 1517 (1930)
T KOG0161|consen 1459 DAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHEL 1517 (1930)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555556666666666666666666666666666666666665554433
No 132
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.35 E-value=24 Score=35.18 Aligned_cols=60 Identities=25% Similarity=0.293 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVEN-QVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN-~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
+++..++.|+.++..+..+- ..+..++......+..|..|+..|...+..|+..+.++.+
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555543 4444444444444444444444444444444444444433
No 133
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=80.32 E-value=14 Score=24.24 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 103 QCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
....+..||..|+..+..+..-+.++..+
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777666555433
No 134
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.01 E-value=26 Score=29.58 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
.+++.+|..|..+-..+..++..+..+...+..+-..|..++..+...+..-..+
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555554444333
No 135
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=79.81 E-value=20 Score=28.40 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYL 106 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~ 106 (140)
|..++++....|..|...+..++..+..
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554444
No 136
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=79.79 E-value=21 Score=31.08 Aligned_cols=44 Identities=23% Similarity=0.198 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 93 LKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 93 L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
|+.+-..+..++..|+.+|.-+-.+-..|...+....++|..+|
T Consensus 31 ~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq 74 (328)
T PF15369_consen 31 LKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQ 74 (328)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666677777777777777777777766666655
No 137
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=79.33 E-value=5.1 Score=29.99 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 87 AVENQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 87 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
+.|...|+.++..|.++...|+.||.-||.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666777777777778888888875
No 138
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=79.29 E-value=8.4 Score=24.23 Aligned_cols=30 Identities=30% Similarity=0.248 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 94 KNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 94 ~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
+.....+...+..|..+|..|+.++..|..
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556667777777888888777777754
No 139
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.15 E-value=8.8 Score=34.91 Aligned_cols=54 Identities=28% Similarity=0.272 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVL-NQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~-~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
.|..+-+.|+.....+..+++... .....+..|-..|+.+...+...|.+|.+=
T Consensus 84 ~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 84 ALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566555555544443332 223344455555555555555555555443
No 140
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=79.11 E-value=17 Score=24.70 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
.|+.--......-+.....+..|...+.....+|..|++++..|..+|..|.+-+
T Consensus 11 ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 11 ALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555667778888888888888999999999999999998886544
No 141
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.96 E-value=34 Score=28.04 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 84 NRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 84 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
..++.++..++..+..+...+..+...|..|...+..+..
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 3344444444444444444444444455555444444433
No 142
>PRK00295 hypothetical protein; Provisional
Probab=78.92 E-value=17 Score=24.35 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 112 EQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 112 ~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
.....++..|+.+|..|.+=|..++
T Consensus 29 ~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 29 VEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555666666666655555444
No 143
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=78.89 E-value=17 Score=29.29 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 97 LNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 97 ~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
+..|..++..+...|-.+...+..|+..+..+.+-..
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666655555544433
No 144
>PRK04406 hypothetical protein; Provisional
Probab=78.83 E-value=18 Score=24.73 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
.++.+||.+++.+..-...|...+..-...+..|..+-..|..++..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788888888888888888888888888888888888888877776654
No 145
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=78.61 E-value=8 Score=27.99 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 94 KNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 94 ~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
..+...+.+....++.+|..|..++..++..+
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333444444445555555555555554443
No 146
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=78.45 E-value=1.3 Score=31.91 Aligned_cols=45 Identities=36% Similarity=0.399 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
.+++.|...+..|..+|..|..++..|..+...+...+..|+..+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 578888888888888888888888777766666666666655544
No 147
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=77.99 E-value=14 Score=35.44 Aligned_cols=54 Identities=30% Similarity=0.361 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKN---------------------ELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~---------------------~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
..++.++..++..+..||..|.. ++..|..++..++.||..|+-++..|...|.
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888889888776 3456677888888888888888887776664
No 148
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=77.98 E-value=41 Score=28.33 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
...-+-....+|..+..++..-++....+..+...|++++..|+....+.+.++.
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF 231 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIF 231 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhh
Confidence 3444556668999999999999999999999999999999999999999888763
No 149
>PRK04325 hypothetical protein; Provisional
Probab=77.93 E-value=19 Score=24.46 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
+..++.++..|+. ++.....-+..|...-..-..++..|..+|..|.+=|..++
T Consensus 4 ~~~~e~Ri~~LE~-------klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 4 VQEMEDRITELEI-------QLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred chhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555554 33333333334444444445566777777777766665554
No 150
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=77.92 E-value=37 Score=27.84 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
+..+..|..++..|...|..|...+..+.
T Consensus 222 r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 222 RRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 34455555555555555555555555443
No 151
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.92 E-value=39 Score=28.09 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
.+....+..|..++..+..+-..|..++..+......+..+-..|+.++..+...+..+..-
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777777777777777777777777777666665443
No 152
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.84 E-value=22 Score=32.96 Aligned_cols=41 Identities=32% Similarity=0.379 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
+.+..+..+.+.+..+|..|..++..+.++...+..||..|
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel 259 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEEL 259 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455556666666777777777777776666666666554
No 153
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=77.64 E-value=12 Score=30.87 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
.-+-+|..+++.|+.|...|+..++.+..++..+......|-.++..+.
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888888888888888888888887777777776643
No 154
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.54 E-value=33 Score=27.08 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=10.3
Q ss_pred CCCChhhhhhhhhhhcc
Q 039918 18 TGFTADDIQEWLSDLFQ 34 (140)
Q Consensus 18 ~~f~~~~~~~~~s~~~~ 34 (140)
.|.++..+-+++..++.
T Consensus 25 ~gI~~~~VKdvlq~LvD 41 (188)
T PF03962_consen 25 KGIVSMSVKDVLQSLVD 41 (188)
T ss_pred cCCchhhHHHHHHHHhc
Confidence 46777666666654444
No 155
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.38 E-value=21 Score=24.82 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 89 ENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 89 eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
|...|+.+++.|......+...+..|..+...|
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneql 58 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQL 58 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444433333
No 156
>PHA03155 hypothetical protein; Provisional
Probab=77.32 E-value=3.7 Score=30.72 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~ 99 (140)
.-+++|..++..|+-||..|+.++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35899999999999999999999855
No 157
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=77.24 E-value=24 Score=27.28 Aligned_cols=13 Identities=23% Similarity=0.573 Sum_probs=8.6
Q ss_pred CCCChhhhhhhhh
Q 039918 18 TGFTADDIQEWLS 30 (140)
Q Consensus 18 ~~f~~~~~~~~~s 30 (140)
.|||+.+...+..
T Consensus 14 ~Gft~~QAe~i~~ 26 (177)
T PF07798_consen 14 AGFTEEQAEAIMK 26 (177)
T ss_pred CCCCHHHHHHHHH
Confidence 5888877655543
No 158
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.18 E-value=42 Score=33.59 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=54.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 57 RMISNRESARRSRWRKKKQLEDLTEEL-NRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 57 R~~sNReSArrSR~RKk~~leeLe~~v-~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
...++=...+.+..+....+.+++.+. ..+..+-.+...++..|..+...++..+.+|+++...+...+.....
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e 436 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE 436 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344555566777777788888888888 77777777788888888888888888888888877777766655543
No 159
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=76.79 E-value=12 Score=32.53 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
|+.++.+|..|..++..-.+....|..-|.+=-.+++.|.+-+..|.+++
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEai 51 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAI 51 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999988888888888888888889999999998887765
No 160
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.67 E-value=36 Score=29.07 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.+..++..+..++...+.++..+..+...+...-.....+..++...++.+..
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444334444444444444444433
No 161
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.55 E-value=20 Score=29.49 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
|+.+.+.+.++-..|..+++.....+..+..++..|+.+.+.+....
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEY 195 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 34444444444444444444444444455555555555554444333
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.54 E-value=40 Score=28.67 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
+.+.+|+.+...+..+-..|..+...+...-.....+...+
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~ 104 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNEL 104 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333333333333
No 163
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=76.51 E-value=32 Score=26.34 Aligned_cols=61 Identities=28% Similarity=0.251 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 74 KQLEDLTEELNRSAVE-------NQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 74 ~~leeLe~~v~~L~~e-------N~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
.|+..|++.+...+.. +..-+..+..|..+...+..+...|..++..++..-.++.+.+.-
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555443332 222333344444444444444444444444444444444444433
No 164
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=76.48 E-value=37 Score=29.41 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
.|..-+...+.+|..|..++..|++.+..+..+|..||..+...+
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 344455555556666666666666666666666666655555443
No 165
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=76.43 E-value=26 Score=25.20 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
.+..++.+--.+...|..|..++..+......-.. +..++.++..+...+..-.+...+|+
T Consensus 18 ~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k 78 (106)
T PF05837_consen 18 KLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMK 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444333222 44555666666666655555444443
No 166
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.06 E-value=36 Score=29.11 Aligned_cols=52 Identities=23% Similarity=0.214 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKEN-------EQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN-------~~Lr~e~~~L~~~l~~l~~il 132 (140)
.+-..|..+...|+.++..+.+.+..+..++ ..++.....|+..+..|..-|
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444443333 333444444455555554444
No 167
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=76.04 E-value=25 Score=28.62 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 87 AVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 87 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
-.||..|..++..+...+..|..||..|+. |..++..|-.+|..+
T Consensus 124 L~ENe~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l 168 (200)
T PF07412_consen 124 LEENEKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERL 168 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 357888999999888888888888888876 444455555555443
No 168
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=75.91 E-value=6.6 Score=35.67 Aligned_cols=52 Identities=27% Similarity=0.397 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
.++|..+|..|..+|..|+.++..+.-.|..+..||.-|+.-...++.+...
T Consensus 45 ~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeq 96 (552)
T KOG2129|consen 45 GESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQ 96 (552)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccch
Confidence 4678889999999999999999999999999999999998887788777663
No 169
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=75.90 E-value=15 Score=26.56 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNEL-NIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~-~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
.....++..+..+..|-..|...+ ............+...+..+...|..+|.+...+
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~ 66 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEAL 66 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555544444 2222222333333333334444444444443333
No 170
>PRK00736 hypothetical protein; Provisional
Probab=75.88 E-value=21 Score=23.87 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
.++.+||.+++....-...|...+..-... -..|..++..|..+|.++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~-------i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKT-------VEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 457888888888777666666655444333 356666666666666554
No 171
>PHA02562 46 endonuclease subunit; Provisional
Probab=75.69 E-value=57 Score=28.83 Aligned_cols=23 Identities=22% Similarity=-0.032 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 99 IVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 99 ~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
.+......|..++..+..++..|
T Consensus 362 ~l~~ei~~l~~~~~~~~~~l~~l 384 (562)
T PHA02562 362 KVKAAIEELQAEFVDNAEELAKL 384 (562)
T ss_pred HHHHHHHHHHhhhhchHHHHHHH
Confidence 33333333333333333333333
No 172
>PRK00736 hypothetical protein; Provisional
Probab=75.67 E-value=21 Score=23.84 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 112 EQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 112 ~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
..-..++..|..+|..|.+=|..++
T Consensus 29 ~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 29 AEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455666666666655555444
No 173
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=75.28 E-value=6.8 Score=31.40 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 49 SDDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 49 ~~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
--+-.|.+|...+++ ...+.++.+|+.++..|..+...+...+..|-
T Consensus 87 v~Ey~R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 87 VFEYWRQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred eehhHHhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777776663 44556677777777777665555555554443
No 174
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.19 E-value=35 Score=26.10 Aligned_cols=63 Identities=21% Similarity=0.266 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
...+..++.++..+..+..+-..|..++.........+..+-..+.+....+...+.+...++
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444445555555555555555555555555555444
No 175
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=74.63 E-value=11 Score=32.49 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~ 99 (140)
.+++|..++..++-++..|+..+..
T Consensus 87 Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 87 EVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHh
Confidence 3344444444444444444444433
No 176
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.23 E-value=21 Score=35.44 Aligned_cols=58 Identities=22% Similarity=0.190 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVL---------------NQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~---------------~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
.+.|+.+|..|...+..|.-.+..|. .++.+|+..|.+|+.-+..||+-.+.-.++.+
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~q 399 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQ 399 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34445555555555555555555553 46677888888888888877776655544433
No 177
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=74.00 E-value=5.9 Score=26.39 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
.++.|..++..|...|..|..++..|+.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555543
No 178
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.66 E-value=28 Score=28.86 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
++..+||.++..+..+...|+. ++..|..+|-.|=+++.-|+
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~-------Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRR-------EVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 4455666666555554444444 44555667777666655443
No 179
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.66 E-value=45 Score=28.52 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
+.|...+..|+.+...|...++.+..-...+......|+.++..|++....
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344555556666666666666665555555555555555555555444433
No 180
>PRK14127 cell division protein GpsB; Provisional
Probab=73.53 E-value=13 Score=27.42 Aligned_cols=41 Identities=22% Similarity=0.095 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
..++.+...+..|..+|..|+.++..+..++..+..+-...
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 57777777777777777777776666666665555544433
No 181
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.49 E-value=33 Score=29.04 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 039918 77 EDLTEELNRS 86 (140)
Q Consensus 77 eeLe~~v~~L 86 (140)
..|..++..|
T Consensus 187 ~~L~~e~~~L 196 (325)
T PF08317_consen 187 AELEEELENL 196 (325)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 182
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.44 E-value=18 Score=25.35 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
.|..++..+..+...+..+|..|+.++
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555554
No 183
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.35 E-value=21 Score=29.63 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 58 MISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 58 ~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
+.+|.|==..-| +-++.+..|..+|+.|+++|-+|-.++..|+.
T Consensus 92 R~Rn~ELE~elr-~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 92 RQRNAELEEELR-KQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444433332 23455667777777777777777777666643
No 184
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.32 E-value=31 Score=28.36 Aligned_cols=48 Identities=23% Similarity=0.148 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
...++.++..+.+.|..|-.....++..+..-+..++..-..++.+..
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777666666665555555554444444433333
No 185
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=73.03 E-value=17 Score=28.98 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
+.=.+.++..|+.+|+.|..++..|... ..+|..+-..+..+.-.|-.
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~Li~~----Ar~Ne~~~~~~~~l~l~LL~ 89 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEELIEN----ARENEAIFQRLHRLVLALLA 89 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 4445678888888888888888777543 67888888888777766643
No 186
>PHA03011 hypothetical protein; Provisional
Probab=72.93 E-value=36 Score=25.27 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
..+++|..+.+.|-.|..-+.++...+..-.+.-..|-.-|++++..|...+.+
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 567888888888888888888887777655555555555666666666655543
No 187
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.18 E-value=21 Score=33.71 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
.+|+..+..++.++..|..++..+
T Consensus 439 ~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 439 SELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333343333333
No 188
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=72.02 E-value=32 Score=24.24 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=58.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 56 RRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 56 RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
-++...++.....=..|...+..++..+..|..|-..-..++-.+......+..||..|+..+..=..-+.
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~ 76 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIE 76 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35566667777777888999999999999999999999999999999999999999999887754443333
No 189
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.96 E-value=38 Score=35.69 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 65 ARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 65 ArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
=|....+.-..+.+|..++..+..+-..|.+.+..+..+.....+++..|+.+...+..|.++|..-
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888888899988888888888888888888888888888888888888888877543
No 190
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=71.19 E-value=54 Score=26.56 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=52.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 54 KKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 54 r~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
|+-++..-..-..|.-.--+.+...|...+..-+.+-......-.....+...|..|....+.++..|+.++..|..
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666777777777777777666666666677777777777777777777777777766654
No 191
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=71.18 E-value=20 Score=26.57 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
.|..++..+.+....|..||+.|-+=+..|-
T Consensus 74 DLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 74 DLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 3445555566666666667777766666553
No 192
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=71.01 E-value=35 Score=24.32 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=23.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 55 KRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 55 ~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
..|-++.=+...+.+..|...+..|..++..|..+...+...+....
T Consensus 62 ~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 62 RERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555544443
No 193
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.98 E-value=46 Score=29.37 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
|.++.++.+.+..+.|..--+.|+.-.+.|......|+.+-..|...+.-|.++...
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344556666666666555555555555555555555555555555555555555443
No 194
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=70.81 E-value=25 Score=25.54 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 85 RSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 85 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
.|...+..|..++..+...+..+...+..+.+++..|+.
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555544444444445555555555544443
No 195
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=70.77 E-value=59 Score=30.29 Aligned_cols=44 Identities=18% Similarity=0.020 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSE 117 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e 117 (140)
.-...||.+|+.+-.+.+.|+..++.+..+...++.+-.+++.+
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888888888887777777777777776666665
No 196
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=70.64 E-value=27 Score=22.93 Aligned_cols=30 Identities=10% Similarity=0.294 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~ 104 (140)
.++.|...|..|......|...+..++...
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555544433
No 197
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=70.64 E-value=48 Score=26.75 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQT 137 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~ 137 (140)
..+-.||.+|+.++..-..+-..+..-.++.-.+..+-..|++.+..|..++..+.++|...|.
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~ 142 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQK 142 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3455677777777666666555555555666677777778888888888888888888876554
No 198
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.54 E-value=66 Score=27.34 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039918 108 WKENEQLTSEYVALRTR 124 (140)
Q Consensus 108 ~~EN~~Lr~e~~~L~~~ 124 (140)
..+...|..++.....+
T Consensus 112 ~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 112 QEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 199
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.29 E-value=37 Score=34.03 Aligned_cols=54 Identities=24% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLN---QCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~---~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+..++++|+..+-.|+.||..|..+|..|.. ....|+..|..+...-.++...+
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~i 584 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYI 584 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3467778888888888888888888877764 33445555555544444444333
No 200
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=70.22 E-value=47 Score=25.49 Aligned_cols=56 Identities=21% Similarity=0.112 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
+--|..+--.|...==...+++..+. +-+.|+.+|..|..++..|+..++.+..=+
T Consensus 49 VvrlKQrRRTLKNRGYA~sCR~KRv~-Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 49 VVRLKQRRRTLKNRGYAQSCRVKRVQ-QKHELEKEKAELQQQVEKLKEENSRLRREL 104 (135)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444433334455555554 457899999999999999988888775543
No 201
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=70.15 E-value=11 Score=26.28 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 105 YLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 105 ~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
+.+..||..|+.++..|.+.|+.+.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667666666666665553
No 202
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=70.12 E-value=44 Score=29.12 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
++++.|+.+++.+..+-..|..++.... .....-..|..++..+..++..+.+++..
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666667777777666666666544433 34455566778888888888888887653
No 203
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=70.11 E-value=30 Score=32.39 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
-|..+++.|...++.|..||..||.++..|.
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3555555555555555566666655555553
No 204
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=69.98 E-value=9.4 Score=27.10 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
|+.+++.|...+..++.+|..|..++...+
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788888888888888888887776543
No 205
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=69.94 E-value=32 Score=31.39 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
+..+.+-+.+.+.|+.+-..|+.+++.+..+...++..-..|.+++..|+.++..
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777778888888888887777777777777777777777777777777643
No 206
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.91 E-value=68 Score=27.67 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 039918 101 LNQCYLLWKE 110 (140)
Q Consensus 101 ~~~~~~l~~E 110 (140)
.+.||.++++
T Consensus 107 EEECHRVEAQ 116 (305)
T PF15290_consen 107 EEECHRVEAQ 116 (305)
T ss_pred HHHHHHHHHH
Confidence 3455555544
No 207
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=69.75 E-value=15 Score=30.91 Aligned_cols=33 Identities=36% Similarity=0.385 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 039918 86 SAVENQVLKNELNIV---LNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 86 L~~eN~~L~~~~~~l---~~~~~~l~~EN~~Lr~e~ 118 (140)
+..+|+.|+.++..+ ......++.||.+|+..+
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555444333 344556667777776544
No 208
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.72 E-value=32 Score=23.31 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
+.+=..+++.|+.|=+.|....-.+...+..|...|..+...+..|..++..+..=+..+
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788888888888888888888888888888888888888888887776655443
No 209
>PRK00846 hypothetical protein; Provisional
Probab=69.08 E-value=36 Score=23.63 Aligned_cols=49 Identities=14% Similarity=-0.011 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
+++.+||.+++....-...|...+.........+..+-..|..++.++.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888888877777777777777777777777777777777776664
No 210
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.40 E-value=1.4e+02 Score=31.03 Aligned_cols=13 Identities=8% Similarity=0.071 Sum_probs=5.6
Q ss_pred HHHHhhHHHHHHH
Q 039918 57 RMISNRESARRSR 69 (140)
Q Consensus 57 R~~sNReSArrSR 69 (140)
.+.+..+.|.+-.
T Consensus 325 kLEkQaEkA~kyl 337 (1486)
T PRK04863 325 DLEQDYQAASDHL 337 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 211
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=68.38 E-value=38 Score=31.47 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQTP 138 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~~ 138 (140)
.++++...+++.+...-.....++..+......++.+|+.|.-+...-+.-+..|..||..+..|
T Consensus 37 ~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~ 101 (701)
T PF09763_consen 37 EYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIP 101 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCC
Confidence 56677777777777777778888888889999999999999999999899999999999887654
No 212
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=68.31 E-value=32 Score=22.81 Aligned_cols=45 Identities=18% Similarity=0.069 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 85 RSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 85 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.+..|-...+..+..+..++...+..|..|..++..|..++..++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566667777777788888888899999999999888887654
No 213
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=68.26 E-value=6.6 Score=33.42 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.+|.++|.+|+.|+.-|..|..++..-...|..+.....++++++..+..+|..|.
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kme 272 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKME 272 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 56789999999999999999999977777777666666788999998888887764
No 214
>PRK10963 hypothetical protein; Provisional
Probab=68.22 E-value=19 Score=28.90 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
.++..|+.+|..|..++..|.. ...+|..+-.++..|.-.|
T Consensus 44 rQ~~~LR~r~~~Le~~l~~Li~----~A~~Ne~l~~~~~~l~l~L 84 (223)
T PRK10963 44 WQMARQRNHIHVLEEEMTLLME----QAIANEDLFYRLLPLQSRL 84 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554432 3556666666666665555
No 215
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=67.93 E-value=57 Score=28.12 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 89 ENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 89 eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
|.+..+.+...|..+...|...|..+|+++.+.+..+.-|++
T Consensus 72 e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 72 ERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333344444444445555555556666666555555555543
No 216
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=67.86 E-value=42 Score=25.06 Aligned_cols=56 Identities=27% Similarity=0.264 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
.+...++..++..+..|..++-.+......+..-+..|..+=..|..+|..+..-|
T Consensus 68 ~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l 123 (141)
T PF13874_consen 68 LETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQL 123 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555556666666666666666655443
No 217
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=67.74 E-value=23 Score=34.22 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKE 110 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~E 110 (140)
+||..+-..+..+++.++.+|.....+...|.+.++.+..+
T Consensus 113 rrK~rre~k~ke~iE~y~~e~pkv~~QFaDLKr~LatvTe~ 153 (913)
T KOG0495|consen 113 RRKERREKKLKEEIEKYRKENPKVQQQFADLKRKLATVTED 153 (913)
T ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHhhcCHH
Confidence 45556666677888889999999999999998888777654
No 218
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=67.72 E-value=18 Score=26.64 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 82 ELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 82 ~v~~L~~eN~~L~~~~~~l 100 (140)
+...|+.||.-|+-+++.|
T Consensus 80 k~~~LeEENNlLklKievL 98 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 219
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=67.44 E-value=64 Score=25.94 Aligned_cols=48 Identities=25% Similarity=0.236 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
..+..-...+..||..|..++..+...+..|...+..|..+...|...
T Consensus 152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666777777777777777777777766666666666544
No 220
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=67.40 E-value=49 Score=30.72 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.+..++..+......++.|...|+.+...|...|..++.
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345556666677777777888888888888888877764
No 221
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=67.25 E-value=54 Score=25.08 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccCC
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL---YRILGSMQTP 138 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l---~~il~~~~~~ 138 (140)
..+++....++.|...-.....+-..+...|..|..|...|..-...+..+|... ..|...+.+|
T Consensus 21 ~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p 88 (157)
T PF04136_consen 21 DQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSP 88 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCC
Confidence 3445555566666666666666777777888888999999999889998888655 4444444443
No 222
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=67.03 E-value=1.1e+02 Score=28.65 Aligned_cols=45 Identities=31% Similarity=0.392 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 70 WRKKKQLEDLTEELNRSAV------------------------ENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~------------------------eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
..+..++.+|+..+..+.. +|..|+..+..+...+-.|..+|..|
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~el 186 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMEL 186 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 3566777777766665543 56677777777777777777777444
No 223
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.94 E-value=68 Score=26.10 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 69 RWRKKKQLEDLTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 69 R~RKk~~leeLe~~v~~L~~eN~~L~~~~~~ 99 (140)
|....++.++|+.+.+.|+.+-+.|+-++..
T Consensus 111 ~e~tEer~~el~kklnslkk~~e~lr~el~k 141 (203)
T KOG3433|consen 111 REETEERTDELTKKLNSLKKILESLRWELAK 141 (203)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444433333333333
No 224
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.54 E-value=49 Score=30.86 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
+..+++|..++..+..+...|...+..+.........++..|.+++.
T Consensus 334 ~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 334 QEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36688888888888888888888888888888888888888877776
No 225
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=66.50 E-value=40 Score=24.19 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 85 RSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 85 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
.+..++..+..++..+......+...|..|-.++..|
T Consensus 7 ~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l 43 (106)
T PF05837_consen 7 NLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLEL 43 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 226
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.38 E-value=75 Score=26.35 Aligned_cols=61 Identities=15% Similarity=0.240 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL-RTRLSNLYRILG 133 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L-~~~l~~l~~il~ 133 (140)
.-++..++.+..-+...+.+...+..++..+..+.... |..+++++... ..+..|+..++.
T Consensus 159 ~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~~~k~~D~k~~~~ 220 (243)
T cd07666 159 DQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWKQNMQTDLRSAFT 220 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444445555556666666666555444 77788888877 456677766554
No 227
>PF14645 Chibby: Chibby family
Probab=65.78 E-value=33 Score=25.33 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLT 115 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr 115 (140)
|..+...|+.||.-|+-++..|..-+.....|-.-+.
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~e 112 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLE 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666665555444444443333
No 228
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=65.69 E-value=49 Score=29.79 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 62 RESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 62 ReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
-++|.--|.|.-+.-...+..+..+..|...|+.+++.......-|..||..|+.-+..|.+-++.+
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 3556666667666666777778888888888888888888888888888888888888777666544
No 229
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=65.62 E-value=33 Score=32.83 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVL---NQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~---~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
...|+.||-.|...+..|+ -.+.++..|+.+|.+++.-|+.+|.++.
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443 2455566666666666666666665553
No 230
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.60 E-value=1e+02 Score=27.73 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=38.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 60 SNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 60 sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
+++...+.--.++...+.+-..+...|+.+...+..++..+..++.....++..++..+..+...|..+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555555555555544
No 231
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=65.19 E-value=35 Score=22.71 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
.....+..++.++..++.+|..|+.++..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556778888888888888888888887764
No 232
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=64.78 E-value=32 Score=24.41 Aligned_cols=49 Identities=31% Similarity=0.363 Sum_probs=35.5
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEE------LNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 74 ~~leeLe~~------v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
+.+.-|..+ |.....||..|+.++..++.-+ ...+-..|-+++..|+..
T Consensus 31 eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 31 EEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 344555543 4456678999999888887666 677888888888888765
No 233
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=64.74 E-value=48 Score=23.59 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
|-.--+.+|..|..+|..|..++..|..+
T Consensus 43 Ye~rwek~v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 43 YEARWEKKVDELENENKALKRENEQLKKK 71 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333
No 234
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=64.72 E-value=37 Score=22.23 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
+++||.++..+...-..++.++..+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i 26 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEI 26 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444444433333
No 235
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.63 E-value=79 Score=25.98 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=29.1
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDL---TEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 73 k~~leeL---e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
..|+++| ...++.|......+..+..........+..|-..|+.++.+++..
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 455555555555555555555555555555556666666655544
No 236
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=64.61 E-value=38 Score=22.27 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
.++.+|..+.+.|..++..|......+..+=...+.|...-..||-+.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466777777777777777777666666666666666666666666543
No 237
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=64.18 E-value=84 Score=29.48 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 039918 109 KENEQLTSEYVALRT 123 (140)
Q Consensus 109 ~EN~~Lr~e~~~L~~ 123 (140)
.+|..|+.++.+|..
T Consensus 160 sQN~eLK~QL~Elq~ 174 (617)
T PF15070_consen 160 SQNRELKEQLAELQD 174 (617)
T ss_pred HhHHHHHHHHHHHHH
Confidence 344444444444443
No 238
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=64.16 E-value=95 Score=28.64 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIV-------LNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l-------~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
+..++.|+.++..|+.+-..|..++..- ......+..|-..++.++..+-.++..+...|.-
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~ 630 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQ 630 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888887777777432 1146666777788888888888888888766544
No 239
>PRK14127 cell division protein GpsB; Provisional
Probab=64.13 E-value=55 Score=24.05 Aligned_cols=59 Identities=22% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLT------SEYVALRTRLSNLYRILG 133 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr------~e~~~L~~~l~~l~~il~ 133 (140)
.++.|..++..|+.+|..|..++..+..+.......+.... .---.+-.||++|++-..
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~VF 102 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHVF 102 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHHh
Confidence 56777778888888888888888888777665543332111 122334556666655443
No 240
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.03 E-value=44 Score=30.46 Aligned_cols=24 Identities=25% Similarity=0.134 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 102 NQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 102 ~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
-+.++|+.||..||..+..|....
T Consensus 304 mr~qqleeentelRs~~arlksl~ 327 (502)
T KOG0982|consen 304 MRDQQLEEENTELRSLIARLKSLA 327 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777776665443
No 241
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.96 E-value=92 Score=29.23 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLT 115 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr 115 (140)
.|+.+++.+...+...-..|..++....+++..+..+|..|+
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
No 242
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.57 E-value=1.8e+02 Score=29.84 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=4.5
Q ss_pred CCCccCCCCCh
Q 039918 12 QLPVLETGFTA 22 (140)
Q Consensus 12 ~~p~~~~~f~~ 22 (140)
++|-.++.||+
T Consensus 394 ~LPFIGfTy~~ 404 (1317)
T KOG0612|consen 394 HLPFIGFTYTH 404 (1317)
T ss_pred cCCeeeeeecc
Confidence 33444444443
No 243
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=63.33 E-value=98 Score=28.65 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
.++++|..++......+..+..+...|..++...+.+...+..++..+...+..
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~ 473 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISR 473 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444333333333
No 244
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.11 E-value=1.7e+02 Score=29.49 Aligned_cols=70 Identities=21% Similarity=0.149 Sum_probs=39.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 60 SNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNEL---NIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 60 sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~---~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
+..++.+....+++..+..|+.++..+..+...+...+ ..+..++..+..++..++.++..+...+..+.
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~ 915 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLE 915 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34445566666667777777666666665555544433 33445555555555555555555555555543
No 245
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.10 E-value=36 Score=31.81 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+.-++.=|..+...++.+-..+..+...+...+.|+..|+++...|+..+
T Consensus 275 ~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 275 VNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666777777777777777777777766655
No 246
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=63.03 E-value=86 Score=25.86 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
=+..++.|+.+|..|+-+++.+..++..+.++-..+-.+-..+
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777776666665554443
No 247
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=62.89 E-value=96 Score=27.30 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 95 NELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 95 ~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
..+..+...+..+..+-..|..++..|...+..
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444443
No 248
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=62.51 E-value=84 Score=25.57 Aligned_cols=32 Identities=25% Similarity=0.147 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q 039918 103 QCYLLWKENEQLTSEYV---ALRTRLSNLYRILGS 134 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~---~L~~~l~~l~~il~~ 134 (140)
+...|..||..|+.++. .++.....|+++|..
T Consensus 77 en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 77 ENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334444444443333 334444445555443
No 249
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=62.01 E-value=92 Score=29.81 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
..+-+||.+-..|.++..++..+++.+++.+.....|-.+|+-+++.-+..+..+.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 56778888888888899999888888888888888888888888887777766654
No 250
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=61.47 E-value=13 Score=32.77 Aligned_cols=26 Identities=31% Similarity=0.219 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
.|..+-..|+.||..|+.++..|...
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 251
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=61.30 E-value=58 Score=23.33 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRS--AVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 73 k~~leeLe~~v~~L--~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
..++..+|.++.+| ..+-..|..++..+. .+=+.|.+++..+...+.-|
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~-------G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELR-------GELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776 445555555555544 44455555555555554444
No 252
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=61.20 E-value=54 Score=22.90 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 106 LLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 106 ~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.+..+-..|+.++..+...+..+..
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 253
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.91 E-value=69 Score=24.10 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
+++.|..+++....-....+.++..+
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v 94 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEV 94 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333333
No 254
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=60.89 E-value=78 Score=24.69 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
|.+.|..++..++.+...|...+.....++......-..+...+.....++..+
T Consensus 80 ~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l 133 (158)
T PF09486_consen 80 YRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRL 133 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444333
No 255
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=60.57 E-value=1.2e+02 Score=30.40 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
.....++..+..+-+.+...+..+.+.+......|..|+.+...+...|.+-..-|..+
T Consensus 444 ~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~ 502 (1041)
T KOG0243|consen 444 KEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESL 502 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555556666666666555556666666666655555554444433
No 256
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.12 E-value=1.1e+02 Score=30.27 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 108 WKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 108 ~~EN~~Lr~e~~~L~~~l~ 126 (140)
...|..|..++..|..++.
T Consensus 436 nak~~ql~~eletLn~k~q 454 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQ 454 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333433333333
No 257
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.94 E-value=51 Score=32.91 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNR----------------------SAVENQVLKNELNIVL--------------NQCYLLWKENEQLTSE 117 (140)
Q Consensus 74 ~~leeLe~~v~~----------------------L~~eN~~L~~~~~~l~--------------~~~~~l~~EN~~Lr~e 117 (140)
+++++|+..++. |+.+|.+|+..+-.|+ ........||..|+..
T Consensus 339 Er~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~ 418 (1243)
T KOG0971|consen 339 ERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQ 418 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777766654 4456777776665443 4455566888888888
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 039918 118 YVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 118 ~~~L~~~l~~l~~il~~~~ 136 (140)
.+.|..++..+..+|+-+|
T Consensus 419 kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 419 KERLSRELDQAESTIADLK 437 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8889999988888877654
No 258
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=59.78 E-value=27 Score=24.73 Aligned_cols=32 Identities=28% Similarity=0.172 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
.+......|...+..+..+|..|..++..+++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566677778888889999999999888764
No 259
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=59.59 E-value=57 Score=28.61 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 039918 82 ELNRSAVENQVLK 94 (140)
Q Consensus 82 ~v~~L~~eN~~L~ 94 (140)
++..|..++..|.
T Consensus 30 ~~~~~~~~~~~~~ 42 (398)
T PTZ00454 30 ELEFLDIQEEYIK 42 (398)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 260
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=59.57 E-value=80 Score=24.39 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 88 VENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 88 ~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
.++..+..++..+..+....+.|...|+.+...|...
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566666777777777777777777777666543
No 261
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=59.55 E-value=22 Score=30.91 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 039918 84 NRSAVENQVLKNELNIVLNQ---CYLLWKENEQLT 115 (140)
Q Consensus 84 ~~L~~eN~~L~~~~~~l~~~---~~~l~~EN~~Lr 115 (140)
-.|..||++|+.++..|..+ +..+..||..|+
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr 94 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKSYEEANQTPPLFS 94 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444322 333445555433
No 262
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=59.52 E-value=1.4e+02 Score=27.88 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
+|--+.+.+.+..+...+.+-..|--++.....+......+|.+++.+...|..+...+..+|.+
T Consensus 45 ~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~ 109 (604)
T KOG3564|consen 45 KRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKC 109 (604)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 34445666677778888888888888999999999999999999999999999999999888765
No 263
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.39 E-value=49 Score=32.47 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
-...++.|...+..|+-+|..|..+++.......++..++.-|+.++...++...+
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~ 724 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRD 724 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 33444444555555555555555555555555555555555555555433333333
No 264
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=59.16 E-value=87 Score=24.68 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSE-YVALRTRLSNL 128 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e-~~~L~~~l~~l 128 (140)
..+++.++..|..++..|..++..+..++..+...+..+++. .......+..+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~l 175 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFL 175 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888999999999999999999988888888777665433 23334444444
No 265
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=59.02 E-value=49 Score=24.79 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=25.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 57 RMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 57 R~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
|....|-.+---|. +|..+++.|+.|+..+.+-...|..++.-|+..+...++..
T Consensus 15 r~ErdR~~WeiERa-------EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 15 RFERDRNQWEIERA-------EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444443 44444444444444444444444444444444444444443
No 266
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=58.84 E-value=79 Score=28.86 Aligned_cols=53 Identities=28% Similarity=0.281 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 70 WRKKKQLEDLTEELNRS--------------AVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L--------------~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
.=|++|-++++.++..- ..+.+.+..++.-|.++|.+.--||..|...+.+=+
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaer 455 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAER 455 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677878877766532 234455666666676666666666655544444333
No 267
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=58.50 E-value=72 Score=23.54 Aligned_cols=53 Identities=23% Similarity=0.176 Sum_probs=29.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 54 KKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLL 107 (140)
Q Consensus 54 r~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 107 (140)
+..=+..|+.-|...=. ++..++++..++..+-.+-..|..++..+..++..+
T Consensus 36 ~~~l~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 36 REELLAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667666665422 245666666666666666666666666665555555
No 268
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.23 E-value=1.4e+02 Score=28.48 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLL 107 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 107 (140)
.+..++..|..|+.+|+.|..++..+......|
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L 455 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKL 455 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444444333333
No 269
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=58.12 E-value=61 Score=22.60 Aligned_cols=56 Identities=25% Similarity=0.242 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWK---ENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~---EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
-+|..+...+..+-..|+.+.+.+..++..+.. +-..|.+++..+...+..+..-+
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444433 23445555555555555554433
No 270
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=57.95 E-value=92 Score=24.98 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 89 ENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 89 eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
|......-...-..++..|..++..|+.++..-+.+|.+|..|
T Consensus 117 Er~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDI 159 (179)
T PF13942_consen 117 ERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDI 159 (179)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3333333333445677778888888888888888888888666
No 271
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.90 E-value=2.2e+02 Score=28.88 Aligned_cols=74 Identities=24% Similarity=0.309 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 62 RESARRSRWRKKKQLEDLT-------EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 62 ReSArrSR~RKk~~leeLe-------~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
++.+..--..+-.++.+|+ .++..+-+++..+++++..+...-..++.|-..|+..+..+..-|....+.|..
T Consensus 420 ~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 420 IEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444544444 444566667777888888888888888888889998888888888777666554
Q ss_pred c
Q 039918 135 M 135 (140)
Q Consensus 135 ~ 135 (140)
+
T Consensus 500 ~ 500 (1200)
T KOG0964|consen 500 T 500 (1200)
T ss_pred h
Confidence 3
No 272
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=57.67 E-value=70 Score=23.14 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSE 117 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e 117 (140)
|...+..|+.+++.+..++..+...+.....+...|+.|
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444445555555554555555555555444
No 273
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.61 E-value=1.6e+02 Score=27.13 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQ----CYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~----~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
++.++.+...++.+|..|.........+ -......+.....++..|..+|.||
T Consensus 391 ~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 391 LKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444445554444444433322222 2222333334444445555555444
No 274
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=57.54 E-value=15 Score=22.84 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 89 ENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 89 eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+|..|...+..+.-++..++.+...|..+-..|+..+
T Consensus 8 qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 8 QNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555555555555443
No 275
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=57.46 E-value=1.2e+02 Score=25.77 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
+..++.+..++...+.+-..+..++.....++..+..+-..|...+.-+..++..+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555556666666666666666555555555555555555555443
No 276
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.44 E-value=98 Score=24.71 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSE 117 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e 117 (140)
.+..+..++.++..|+.....++.++...++++..+...+...+..
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444454444444444444444444444444444433
No 277
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=57.31 E-value=2.2e+02 Score=28.82 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
.|..+-.+.||+--..--+++-..++++..+.-.|..++..|..++..|.+.+..+...+..|...-..|......|.+-
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e 451 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEE 451 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888877777777778888888888888888888888888888888877777777766665555555544443
Q ss_pred H
Q 039918 132 L 132 (140)
Q Consensus 132 l 132 (140)
.
T Consensus 452 ~ 452 (1195)
T KOG4643|consen 452 T 452 (1195)
T ss_pred H
Confidence 3
No 278
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=57.24 E-value=84 Score=28.84 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVL------NQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~------~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
++.||.+++.|+.+-..|..++..-. .....+..|-..++.++..+-.++..+..+
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 631 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELEAL 631 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999998888888775321 156777788888888888888888887743
No 279
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=57.23 E-value=33 Score=29.88 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 102 NQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 102 ~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
..+..+..||.+|++++..|+.++..+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~ 83 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSY 83 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666655553
No 280
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=57.21 E-value=65 Score=24.74 Aligned_cols=59 Identities=22% Similarity=0.182 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL---TSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L---r~e~~~L~~~l~~l~~il~~ 134 (140)
+-++.|+.+++.|..+-..+..++.....+-. ..||+.. +.+...+..++..|...|..
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GD--lsENaey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGD--HGDQAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC--cchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777655555555544332221 2333322 33444455555555555543
No 281
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=57.09 E-value=1e+02 Score=24.81 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLW 108 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~ 108 (140)
++.|+.++......-...-.++..+..++..+.
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E 126 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLE 126 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433333333333333333333
No 282
>PF14645 Chibby: Chibby family
Probab=57.09 E-value=69 Score=23.58 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~ 104 (140)
.|+.+.+.|+-++.-|..-+......+
T Consensus 82 ~L~EENN~Lklk~elLlDMLtettae~ 108 (116)
T PF14645_consen 82 QLEEENNLLKLKIELLLDMLTETTAEA 108 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333
No 283
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=57.01 E-value=77 Score=23.39 Aligned_cols=7 Identities=43% Similarity=0.848 Sum_probs=2.7
Q ss_pred hhhhhhh
Q 039918 23 DDIQEWL 29 (140)
Q Consensus 23 ~~~~~~~ 29 (140)
.++.+++
T Consensus 7 ~eL~~Ll 13 (150)
T PF07200_consen 7 EELQELL 13 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334333
No 284
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=56.98 E-value=1.4e+02 Score=31.79 Aligned_cols=66 Identities=24% Similarity=0.236 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 68 SRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 68 SR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
.=....+.++.|..+|..++.++..+.........++.-|...-..+++++..|+.+-.++...|.
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~ 720 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTIS 720 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566889999999999999999999999999999999999888999999999988888877664
No 285
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=56.97 E-value=1.1e+02 Score=24.97 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 039918 52 ERKKRRMISNRESARRSRWRKKK----QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKE----------------- 110 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~----~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~E----------------- 110 (140)
.+|.||-...+.++=.-+-+=.+ ++...-.++..|+..|++|..++..|+.-|-.|..+
T Consensus 22 ~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGry 101 (195)
T PF10226_consen 22 VRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRY 101 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhH
Confidence 37788888888777554433322 334444666777778888888777777555554432
Q ss_pred -HHHHHHHHHHHHHHHHHH
Q 039918 111 -NEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 111 -N~~Lr~e~~~L~~~l~~l 128 (140)
-..++.++....++|..|
T Consensus 102 ta~vmr~eV~~Y~~KL~eL 120 (195)
T PF10226_consen 102 TASVMRQEVAQYQQKLKEL 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 234566677667776666
No 286
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=56.96 E-value=1e+02 Score=24.73 Aligned_cols=42 Identities=24% Similarity=0.090 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVA 120 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~ 120 (140)
...++..|...-..+..++-.+...|..|+.|...|+.+..+
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444333
No 287
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=56.95 E-value=2.1e+02 Score=28.46 Aligned_cols=34 Identities=29% Similarity=0.277 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 97 LNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 97 ~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
...+..++..+..+-..|..++..+..++..+.+
T Consensus 732 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 765 (1163)
T COG1196 732 LEQLQSRLEELEEELEELEEELEELQERLEELEE 765 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433333334444444433
No 288
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=56.93 E-value=67 Score=28.16 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 86 SAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 86 L~~eN~~L~~~~~~l~~~~ 104 (140)
++.++..|..++..+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~ 45 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQ 45 (398)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333
No 289
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=56.88 E-value=1.1e+02 Score=27.20 Aligned_cols=70 Identities=30% Similarity=0.331 Sum_probs=38.3
Q ss_pred CCChHHHHHHHHHHhhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 47 VYSDDERKKRRMISNRESARRSRWR---------KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSE 117 (140)
Q Consensus 47 ~~~~eeRr~RR~~sNReSArrSR~R---------Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e 117 (140)
|...++|-++-|.+| |+.--.| =|..+++++.+++....+|..+..++..+.+-|..|...-..|++.
T Consensus 121 v~EveekykkaMvsn---aQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~ 197 (405)
T KOG2010|consen 121 VSEVEEKYKKAMVSN---AQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEG 197 (405)
T ss_pred hHHHHHHHHHHHHHH---HhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666 2221111 1244556666666666666666666666666666665555555554
Q ss_pred HH
Q 039918 118 YV 119 (140)
Q Consensus 118 ~~ 119 (140)
+.
T Consensus 198 l~ 199 (405)
T KOG2010|consen 198 LR 199 (405)
T ss_pred HH
Confidence 43
No 290
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=56.61 E-value=1e+02 Score=24.65 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
=|+.-++.|+.+|...+.-.+.....+............--...+.++..|...|.....-+
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl 125 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANL 125 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999888877777777776666655555555555555555555555544433
No 291
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=56.40 E-value=58 Score=24.69 Aligned_cols=45 Identities=22% Similarity=0.125 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
-+......+..|+.||..|+..+-.+++-+..=...-..|+.++.
T Consensus 79 vl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 79 VLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345555667777788888888777777666555555555555443
No 292
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=56.00 E-value=83 Score=27.09 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 039918 109 KENEQLTSEYVALRTRLSNLYRILGSMQTPS 139 (140)
Q Consensus 109 ~EN~~Lr~e~~~L~~~l~~l~~il~~~~~~~ 139 (140)
..|..|+..-..|-..+..|-.=...||+++
T Consensus 250 s~seElkssq~eL~dfm~eLdedVEgmqsTi 280 (330)
T KOG2991|consen 250 SQSEELKSSQEELYDFMEELDEDVEGMQSTI 280 (330)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhcchhhH
Confidence 4455666666666666666666666676654
No 293
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=55.89 E-value=3.8 Score=34.06 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
|..+++...++..|+.-...|..++..|++....|..||.+|
T Consensus 121 KT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 121 KTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444444444444445555555
No 294
>smart00340 HALZ homeobox associated leucin zipper.
Probab=55.77 E-value=37 Score=21.28 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
.+-|..=.+.|..||..|..++..|+
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667788888888888887765
No 295
>PRK02224 chromosome segregation protein; Provisional
Probab=55.48 E-value=1.9e+02 Score=27.36 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNE 96 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~ 96 (140)
++..+..++.+...|..+
T Consensus 375 ~~~~l~~~~~~l~~l~~e 392 (880)
T PRK02224 375 AREAVEDRREEIEELEEE 392 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 296
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=55.45 E-value=54 Score=24.86 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
+...+.-+..|+.+...=-.++..|+.++..+...|..|..
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444555555555555555555555566666666665543
No 297
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=55.44 E-value=1.9e+02 Score=27.53 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELN 84 (140)
Q Consensus 73 k~~leeLe~~v~ 84 (140)
++.+..||.++.
T Consensus 487 Kq~l~~LEkrL~ 498 (697)
T PF09726_consen 487 KQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 298
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=55.42 E-value=1.1e+02 Score=28.97 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
+|+.+|+.|+.++..|..++..+..+
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e 108 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESRERE 108 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555554444444444333
No 299
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.23 E-value=2.4e+02 Score=28.58 Aligned_cols=38 Identities=26% Similarity=0.135 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLT 115 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr 115 (140)
.|.-++..|..+-..+...+..+...+..+..++..|.
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444333
No 300
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=55.22 E-value=1.3e+02 Score=25.45 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 91 QVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 91 ~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
..+..++..+...+..+..+...|.+++..-+..|....+=|.++|
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555544444444444444444443
No 301
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=55.18 E-value=43 Score=27.01 Aligned_cols=44 Identities=30% Similarity=0.335 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 89 ENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 89 eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
.+.+|......|..++..|..+|..|..++.+|+..+..+...+
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~ 149 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREM 149 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 34456667777777888888888888888888888777665443
No 302
>PRK10722 hypothetical protein; Provisional
Probab=54.94 E-value=63 Score=27.16 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 101 LNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 101 ~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
..+...+..++..|+.++.....+|.+|..|=
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIE 206 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLTDIE 206 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777777776663
No 303
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=54.76 E-value=1.7e+02 Score=27.15 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQTP 138 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~~ 138 (140)
.++++.++..|+.+..-...+..++.........+..+=..|+.+...+..+-.-+..++.-.|.+
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls 109 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLS 109 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 356777888888888888888888888888888888888888888888888777777777665543
No 304
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.69 E-value=1e+02 Score=28.44 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 039918 117 EYVALRTRLSNLY 129 (140)
Q Consensus 117 e~~~L~~~l~~l~ 129 (140)
.=++|+.+|..|.
T Consensus 412 ~EE~Lr~Kldtll 424 (508)
T KOG3091|consen 412 DEEELRAKLDTLL 424 (508)
T ss_pred cHHHHHHHHHHHH
Confidence 3455666655543
No 305
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.59 E-value=1.5e+02 Score=29.34 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 102 NQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 102 ~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
.+...|..|-..|..++..|..+|.|+
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334444444444444444444444443
No 306
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=54.37 E-value=38 Score=28.63 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~ 99 (140)
.+.|+.++..|+.+|..|..+++.
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~ 57 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDA 57 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444433
No 307
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=54.28 E-value=22 Score=22.94 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
..-.+...++..|..||..|+.++..++.
T Consensus 22 ~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 22 LDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456778888899999999998876643
No 308
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=54.07 E-value=87 Score=23.13 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
...++.|...|..+-..-..|..+...|......+..++..+-..+..+...|..++.+
T Consensus 32 ~~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDv 90 (121)
T PF06320_consen 32 NALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDV 90 (121)
T ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 35566777777777777777888888999999999999999988888888888776543
No 309
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=53.93 E-value=53 Score=22.52 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
+..|+.+-+.+.-|+-.|+..+...++++....=++..-.-=+..|-.....+.+.|..
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Confidence 44556666666666666666666666555555545544444444444444444444443
No 310
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=53.79 E-value=1.7e+02 Score=26.35 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH---HHHHHHHHHHH
Q 039918 49 SDDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRS----------------AVENQVLKNELN---IVLNQCYLLWK 109 (140)
Q Consensus 49 ~~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L----------------~~eN~~L~~~~~---~l~~~~~~l~~ 109 (140)
..++|.+||+..--+==||-|..=...+.+|-.-|-.. ..-+..|+...+ .+..+...|+.
T Consensus 225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~ 304 (411)
T KOG1318|consen 225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLES 304 (411)
T ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 44556666666666777777777777777776655433 223333443333 33445555667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 110 ENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 110 EN~~Lr~e~~~L~~~l~~l 128 (140)
.|..|..++.+|...+...
T Consensus 305 ~n~~L~~rieeLk~~~~~~ 323 (411)
T KOG1318|consen 305 TNQELALRIEELKSEAGRH 323 (411)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777776665544
No 311
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=53.64 E-value=1.6e+02 Score=27.00 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 82 ELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 82 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
+..+-.-||..|...+..-.+.+..-..||..|.+--.+|..+|+.
T Consensus 436 QYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaa 481 (593)
T KOG4807|consen 436 QYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAA 481 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 3344445777788877777766777778888888888888877754
No 312
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.86 E-value=48 Score=23.14 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=22.4
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 65 ARRSRWRKK----KQLEDLTEELNRSAVENQVLKNEL 97 (140)
Q Consensus 65 ArrSR~RKk----~~leeLe~~v~~L~~eN~~L~~~~ 97 (140)
-.+-|.||. ..++.|..++..|..+|..|..++
T Consensus 62 L~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 62 LKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555554 466777788888888888877765
No 313
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=52.84 E-value=99 Score=28.80 Aligned_cols=56 Identities=23% Similarity=0.257 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL----TSEYVALRTRLSNL 128 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L----r~e~~~L~~~l~~l 128 (140)
.++++++..-++.|..++..+..++..+...|.....+|... +.++..|...|.++
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~l 545 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDL 545 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 477888999999999999999999999999998888777665 67888888888776
No 314
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=52.67 E-value=1.5e+02 Score=25.55 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVENQVLKNELNIVL--------------NQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~--------------~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
|.++.+++-..++..|..||+.|...+..+. .++..++......+.++..|...|..+..=
T Consensus 50 KQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 50 KQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555666666666665555543 344455555555566666666555554433
No 315
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=52.61 E-value=1.7e+02 Score=25.98 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 93 LKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 93 L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
|...+..+......++.+...|..++..|..++..
T Consensus 90 l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ 124 (390)
T PRK10920 90 LEGILKQQAKALDQANRQQAALAKQLDELQQKVAT 124 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444455555555444443
No 316
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=52.20 E-value=72 Score=21.62 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
+-++++...+..++.+-..+..+...+......+..+=..-.+.+..+-..+.++.+.+..+.
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 346666666666666666666777666666666666655666666666666666666665543
No 317
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=52.08 E-value=1.1e+02 Score=26.55 Aligned_cols=53 Identities=26% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
|..-|.....+.+.++..++.+...-..|...-.+-+.+++.++.+|..|..|
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqsi 162 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSI 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 318
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=52.06 E-value=66 Score=27.78 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
+++.++..|+..+..|..++..+......+..++..|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (389)
T PRK03992 12 ELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555544444444444444333
No 319
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.80 E-value=2.4e+02 Score=28.02 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 66 RRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 66 rrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
.+-..+=|..+-+|..+++.|+..+.+|..++..+.+.+.....+-+.|+.+..-|+.+|..+
T Consensus 656 ~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 656 DDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444556666777777777777777777777777777777777777777777777777644
No 320
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=51.71 E-value=41 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
+.++.|..++..|...|..|..++..|+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665553
No 321
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.70 E-value=2.7e+02 Score=28.16 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQ-----VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~-----~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
.+..+.+++.++..|..++. .+..+...+..++..+..++..+..++..|...+..+..=|
T Consensus 1026 ~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1026 RENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666665554 35556666666666666666666666666666665554443
No 322
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.19 E-value=96 Score=22.77 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039918 111 NEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 111 N~~Lr~e~~~L~~~l~~l 128 (140)
-..|..++..+..++.+|
T Consensus 100 k~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555444
No 323
>PF15058 Speriolin_N: Speriolin N terminus
Probab=51.17 E-value=27 Score=28.45 Aligned_cols=27 Identities=26% Similarity=0.190 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 97 LNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 97 ~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
++-+.++...|+.||..||..+.-|+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirE 33 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRE 33 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445677888899999999998877754
No 324
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=51.08 E-value=2.6e+02 Score=27.82 Aligned_cols=62 Identities=18% Similarity=0.073 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 61 NRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 61 NReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
--++++.+-....+...+|..++..+..+-..+..+.......+..+..|-.-|-.++..|.
T Consensus 453 Qle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 453 QLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333433333444444444444444444333
No 325
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=51.05 E-value=75 Score=21.51 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKEN--------EQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN--------~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
++.+...+..|...-..|...+..+...+..+..-+ .....++..++.++..++..+..+
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~l 83 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKL 83 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566555555555555555554443333311 113444555555555555555544
No 326
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=50.72 E-value=1e+02 Score=22.98 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 039918 113 QLTSEYVALRTRLS 126 (140)
Q Consensus 113 ~Lr~e~~~L~~~l~ 126 (140)
.....+..+..+++
T Consensus 123 ~~e~~~~~~~~ria 136 (139)
T PF13935_consen 123 AYEGEIADYAKRIA 136 (139)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444443
No 327
>COG4420 Predicted membrane protein [Function unknown]
Probab=50.63 E-value=1.3e+02 Score=24.44 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 89 ENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 89 eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
+-..|..++..+......+..++..+++.+.++...+.+.......
T Consensus 135 e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~~~~~~~a 180 (191)
T COG4420 135 EVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPELADEEALRRA 180 (191)
T ss_pred HHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcccccHHHHHHH
Confidence 4455667777776666677788888888888888877776655443
No 328
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=50.60 E-value=85 Score=28.51 Aligned_cols=52 Identities=25% Similarity=0.171 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+....+..+...++.+-..++.+++...-.+..|..||..|.++......-.
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~ 78 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE 78 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777778888888888888888888888888888887776654433
No 329
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.57 E-value=1.1e+02 Score=23.47 Aligned_cols=69 Identities=19% Similarity=0.124 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 48 YSDDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 48 ~~~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
-++|....-..|-+ +=......|..++-.-+.|-..|...-..=.+.+.+|..|...|+.++.+++-.+
T Consensus 44 LT~EQQa~~q~I~~---------~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 44 LTTEQQAAWQKIHN---------DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred CCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35565555555543 2333444455444444444444444333334667777778888887777666544
No 330
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.51 E-value=1.3e+02 Score=23.98 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLW 108 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~ 108 (140)
-...++.+.+-++-+.+=..-+.++..++.++..|.-++..|..++..+......|.
T Consensus 71 ~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 71 VEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777666666777777777777777777777777766655544443
No 331
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=50.46 E-value=71 Score=21.07 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
+++|+.++..|+.|...+...+..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776666655443
No 332
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.98 E-value=1.3e+02 Score=23.93 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
..++..+..|+..-..|+.+...+.........|..+|+..+..+...+.++..
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777777777777777777777777777778888888888888888877643
No 333
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=49.95 E-value=1.2e+02 Score=26.49 Aligned_cols=57 Identities=23% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVL-------KNEL----NIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L-------~~~~----~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
+...+.|+..+..|..+-+-| +.++ +.|..-++....||..|+.+..+|.+++.+|+
T Consensus 50 a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~eaL~dq~adLh 117 (389)
T KOG4687|consen 50 AARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREALLDQKADLH 117 (389)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHh
No 334
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=49.71 E-value=78 Score=28.34 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKN--ELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~--~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
+++.+|+.++..+......+.. .-..+..++..+..+-..|+..+.-|+.-+.++..
T Consensus 170 ~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 170 ERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777665555432 22334455555666666666666666666666544
No 335
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=49.56 E-value=1.3e+02 Score=29.36 Aligned_cols=60 Identities=23% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
+++.+..|+ ..+.|..+-..+++.+..+...-..+...+..|++++..|+.....-.+.|
T Consensus 208 lkermaAle-~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~m 267 (916)
T KOG0249|consen 208 LKERMAALE-DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQEL 267 (916)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
No 336
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=49.31 E-value=1.6e+02 Score=24.93 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=34.5
Q ss_pred HHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 55 KRRMISNRESAR-RSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 55 ~RR~~sNReSAr-rSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
.-.-|+|+|..= .+|.+|+.-. .++..|..... -..++..|.+++..++.+|....+++..+
T Consensus 129 ~LK~IR~~E~sl~p~R~~r~~l~----d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 129 HLKSIRNREESLQPSRDRRRKLQ----DEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHhHHHH----HHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 335677887664 4444444332 33334433222 13456667777777777777776666655
No 337
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=49.03 E-value=1.6e+02 Score=27.64 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
.|..++..|+.++..|..++..|.
T Consensus 507 ~L~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 507 ELQKEIEELERENERLRQELEELE 530 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 338
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.61 E-value=88 Score=21.59 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
..|..........-..++.++..|-.++.++
T Consensus 25 eeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 25 EELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333334445555556666655554
No 339
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=48.37 E-value=1.5e+02 Score=25.63 Aligned_cols=41 Identities=29% Similarity=0.240 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 69 RWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWK 109 (140)
Q Consensus 69 R~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~ 109 (140)
|++....+++|+.+...|..+|...+..+..|..++..+..
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~ 143 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKK 143 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55566677777777777777777766666666555554443
No 340
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.25 E-value=1.1e+02 Score=22.61 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=36.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 58 MISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 58 ~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
+..-.|...-|+..=...-++|+..+..|+.+|......+..|..++..+...-..-+.-...|+.++.
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~ 89 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLL 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555666666666666666666666655555544433332222224444443
No 341
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=48.23 E-value=1.8e+02 Score=25.11 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039918 106 LLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 106 ~l~~EN~~Lr~e~~~L~~~l 125 (140)
.+..+...+..++..++.++
T Consensus 97 ~l~~~l~~~~~~l~~l~~~~ 116 (372)
T PF04375_consen 97 QLQQELAQLQQQLAELQQQL 116 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444333
No 342
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=48.19 E-value=1.2e+02 Score=29.56 Aligned_cols=52 Identities=19% Similarity=0.033 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 80 TEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 80 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
..+...|++||..|...+..-..+......||..+..++..|..++..+...
T Consensus 703 ~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e 754 (961)
T KOG4673|consen 703 PIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVE 754 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666555443
No 343
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=48.10 E-value=87 Score=23.35 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 91 QVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 91 ~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
=.+...+..+......+..|...|+.++..|...|.
T Consensus 89 l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~ 124 (141)
T PF13874_consen 89 LRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLN 124 (141)
T ss_dssp HHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 333334444444444444444444444444444443
No 344
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=47.84 E-value=89 Score=21.42 Aligned_cols=32 Identities=28% Similarity=0.230 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 97 LNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 97 ~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
+..++.+++.+.-||-.||.++...++.|+..
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~a 41 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHA 41 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777788888888887777777543
No 345
>PRK11281 hypothetical protein; Provisional
Probab=47.59 E-value=3.2e+02 Score=27.69 Aligned_cols=81 Identities=22% Similarity=0.174 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKK-----------KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVA 120 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk-----------~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~ 120 (140)
+|.+.++-.|+.--+.-+.+-+ .....|+.+...+..+|..++.++........-+..+-+.++.++..
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~ 238 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQR 238 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555554442 34566777777777777777776655544444444444445555555
Q ss_pred HHHHHHHHHHHH
Q 039918 121 LRTRLSNLYRIL 132 (140)
Q Consensus 121 L~~~l~~l~~il 132 (140)
+..+++.+...+
T Consensus 239 ~~~~~~~lq~~i 250 (1113)
T PRK11281 239 LEHQLQLLQEAI 250 (1113)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 346
>PTZ00464 SNF-7-like protein; Provisional
Probab=47.53 E-value=1.5e+02 Score=23.97 Aligned_cols=33 Identities=6% Similarity=0.049 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 103 QCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
+...+......+..++..+...+..+.+++..+
T Consensus 62 ~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~i 94 (211)
T PTZ00464 62 RAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTT 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555544433
No 347
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=47.53 E-value=1.7e+02 Score=24.68 Aligned_cols=56 Identities=23% Similarity=0.270 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
..++.+....+.|....++-+.++.....++..|..=.-.-..|.+.|...|..++
T Consensus 183 ~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 183 QQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333333344444444444443
No 348
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.29 E-value=2.3e+02 Score=29.14 Aligned_cols=58 Identities=28% Similarity=0.256 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
.+..+....+..+..+-..++.++..+...+..+..+-..|+..+..+++++..+.+.
T Consensus 535 ~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~ 592 (1293)
T KOG0996|consen 535 ESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSS 592 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444444444555555444443
No 349
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=46.74 E-value=44 Score=26.99 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 85 RSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 85 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
+|+.+-..|+..+..|......|..|+..|++++..+.....
T Consensus 109 qlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~ 150 (198)
T KOG0483|consen 109 QLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQ 150 (198)
T ss_pred hhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 455556667777777777777777788888887776655443
No 350
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.58 E-value=1e+02 Score=25.45 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 108 WKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 108 ~~EN~~Lr~e~~~L~~~l~~l 128 (140)
..+|.+|-.++..|...|.+.
T Consensus 68 A~~N~~lf~r~~~lq~~Ll~a 88 (218)
T COG3159 68 ARANERLFYRLHALQLDLLDA 88 (218)
T ss_pred HHhhHHHHHHHHHHHHHHHhc
Confidence 456666666666666665443
No 351
>PRK03918 chromosome segregation protein; Provisional
Probab=46.40 E-value=2.6e+02 Score=26.30 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 039918 119 VALRTRLSN 127 (140)
Q Consensus 119 ~~L~~~l~~ 127 (140)
..+..++..
T Consensus 269 ~~l~~~l~~ 277 (880)
T PRK03918 269 EELKKEIEE 277 (880)
T ss_pred HHHHHHHHH
Confidence 333333333
No 352
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.34 E-value=1.8e+02 Score=26.78 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 91 QVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 91 ~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.++..++..+..+...+..+|..|.+....++.+|..+.
T Consensus 385 ~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 385 QQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE 423 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444555555666666667777666666666655553
No 353
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=46.24 E-value=2.1e+02 Score=25.26 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039918 107 LWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 107 l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
+..+-..|++++..|...+..+
T Consensus 74 l~~~~~~l~~~~~~~~~~~~~~ 95 (418)
T TIGR00414 74 IKKELKELKEELTELSAALKAL 95 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555444444443
No 354
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=45.82 E-value=57 Score=24.31 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 50 DDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLK 94 (140)
Q Consensus 50 ~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~ 94 (140)
-|-.|..|+.++++.+. ++.+++|+.++..|..+...+.
T Consensus 94 ~E~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 94 YEYWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666555543 3556777777777766655543
No 355
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=45.75 E-value=1.7e+02 Score=26.72 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.|++-|...+.+....-.++......+.++...+..+-..|.-++..|.++-..|.
T Consensus 432 rYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq 487 (507)
T PF05600_consen 432 RYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQ 487 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555544444443
No 356
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.72 E-value=1.2e+02 Score=22.22 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 86 SAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 86 L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
-+..|..|...+..-...+..++.||..|.-.-..|..|+..|
T Consensus 24 EQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~L 66 (102)
T PF10205_consen 24 EQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVL 66 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444
No 357
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=45.53 E-value=1.5e+02 Score=23.32 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL-----TSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L-----r~e~~~L~~~l~~l~~il~ 133 (140)
+....+.|..+-..+..++..|.+....+..+-..- |.|++++.++|..|.+-|.
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~ 142 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLK 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
No 358
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.48 E-value=1.5e+02 Score=24.89 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 039918 110 ENEQLTSEYVALR 122 (140)
Q Consensus 110 EN~~Lr~e~~~L~ 122 (140)
.++.+..++..|+
T Consensus 90 ~~~~ie~~l~~l~ 102 (247)
T COG3879 90 DDAALEDRLEKLR 102 (247)
T ss_pred HHHHHHHHHHHHH
Confidence 3333433444433
No 359
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=45.44 E-value=3.1e+02 Score=27.78 Aligned_cols=55 Identities=18% Similarity=0.139 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 039918 83 LNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQT 137 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~ 137 (140)
+..+-..|..|..++....++...+..+|.+.+.++..+++-+.++.+=+...+.
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~ 314 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGV 314 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444567999999999999999999999999999999999999988877766553
No 360
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=45.21 E-value=2.4e+02 Score=25.69 Aligned_cols=28 Identities=36% Similarity=0.312 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
++++.+.|..++.|+.||..|..+.-..
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999999888776543
No 361
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=45.19 E-value=1.3e+02 Score=22.57 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEY-VALRTRLSNL 128 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~-~~L~~~l~~l 128 (140)
..+......|...+..|+.+. ..++..+.+|
T Consensus 58 ~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDL 89 (136)
T PF04871_consen 58 EELASEVKELEAEKEKLKEEARKEAQSELDDL 89 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 333444444444454444443 3444444444
No 362
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.05 E-value=3.3e+02 Score=28.00 Aligned_cols=65 Identities=25% Similarity=0.202 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 64 SARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 64 SArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
+.+.+-.+++..+..+...+..+..+-......+..+......+...-..+++++.++++.++..
T Consensus 532 ~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~ 596 (1293)
T KOG0996|consen 532 ASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS 596 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556666666777766666666666666666666666666666666666666666655443
No 363
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=45.05 E-value=56 Score=22.72 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVLNQCY 105 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~~ 105 (140)
+..+..||..|+.+++.+...+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQ 24 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777776665543333
No 364
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=45.03 E-value=49 Score=22.74 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
+++.++.+...|..||..|.-+...+.
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 377777777777777777777776664
No 365
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.99 E-value=1.3e+02 Score=25.68 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
..+......+-..+...=..++..+.+++.++..|+.+......+...+
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l 268 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQEL 268 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555566667777777766666555544444443
No 366
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=44.78 E-value=2e+02 Score=24.48 Aligned_cols=36 Identities=17% Similarity=0.011 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 039918 103 QCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQTP 138 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~~ 138 (140)
....+....+.|+.+...|...+.++..-+..+|..
T Consensus 203 ~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~ 238 (264)
T PF07246_consen 203 LHEELEARESGLRNESKWLEHELSDAKEDMIRLRND 238 (264)
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455556667778888888888877776666543
No 367
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=44.56 E-value=2.5e+02 Score=25.64 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQTPS 139 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~~~ 139 (140)
+..-..+++.++..+..+-..+..+...+......+..+-...+..+..++..+..+.+.|.-...|.
T Consensus 374 ~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpg 441 (569)
T PRK04778 374 QEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPG 441 (569)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33446667777777777777777777777788888888888888888888888888888777666553
No 368
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.51 E-value=1.8e+02 Score=23.93 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
-|+..++-+|.++..|..--..+..++.-|+.+=..+...|..-.+.+..+.-
T Consensus 131 AKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~fSi 183 (210)
T KOG1691|consen 131 AKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWFSI 183 (210)
T ss_pred HhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 37789999999999999999999999999999999999999988888877653
No 369
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=44.45 E-value=93 Score=28.50 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
.|...+..|..++..|+..|+.|++.+.+.+.++-.+.+.....|
T Consensus 410 el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q 454 (514)
T KOG4370|consen 410 ELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQ 454 (514)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666777777777777888888888877777776655443
No 370
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=44.40 E-value=1.1e+02 Score=21.63 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 82 ELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 82 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
+.+.|..||+.|..+... ...+.+|...+.+.++=
T Consensus 31 ~~~kL~~en~qlk~Ek~~-----~~~qvkn~~vrqknee~ 65 (87)
T PF10883_consen 31 QNAKLQKENEQLKTEKAV-----AETQVKNAKVRQKNEEN 65 (87)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHh
Confidence 345555555555554433 33345666666665543
No 371
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=44.25 E-value=1.7e+02 Score=23.69 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQT 137 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~ 137 (140)
.+.+.|+.+-..-...-..+..+-+....|-..|..+-...+.+|..+.+-|..+|.
T Consensus 126 ~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 126 ARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444445555666667777888888888888899988877776653
No 372
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=44.20 E-value=1.7e+02 Score=23.68 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 107 LWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 107 l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
+..+-+.|+.++...+.+|..+.
T Consensus 121 mQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 121 MQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666554
No 373
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=44.14 E-value=1e+02 Score=20.95 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 84 NRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 84 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
...+.....|...+.....+...|...+..|-.++..|...+..+
T Consensus 24 ~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 24 QEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445555555555555566666666666666666665544
No 374
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=44.14 E-value=7.5 Score=36.29 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 039918 68 SRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYL---LWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 68 SR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~---l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
.-++|-..+..|..+|..|+.+|..|......|.+++.. +..+...++.++..|..++.+
T Consensus 319 ~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 319 KYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777788888888888888777776666544433 333444444444444444433
No 375
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=43.79 E-value=1.9e+02 Score=23.98 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=19.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 92 VLKNELNIV-LNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 92 ~L~~~~~~l-~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
.++.++..+ ..+.+.+..||..|+-+++.++..|
T Consensus 105 kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 105 KIRSELVSIERSEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333 3456666677777777776666655
No 376
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.64 E-value=3.2e+02 Score=27.38 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+..++.+-..+..+......++..+..+-..+++++..|...|
T Consensus 492 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 492 VEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333333334444444444444444444
No 377
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=43.57 E-value=1.9e+02 Score=25.13 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 039918 113 QLTSEYVALRTRLSNL 128 (140)
Q Consensus 113 ~Lr~e~~~L~~~l~~l 128 (140)
+|.+++...+.+|+.+
T Consensus 88 rLEtEiES~rsRLaaA 103 (305)
T PF14915_consen 88 RLETEIESYRSRLAAA 103 (305)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555443
No 378
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=43.36 E-value=87 Score=20.05 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 111 NEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 111 N~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
...++..+..|..++..+...+.
T Consensus 75 ~~~i~~~~~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 75 SDEIQEKLEELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665555443
No 379
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=43.27 E-value=7.9 Score=32.22 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
..++...+.+..|+..+..|..+...|..||.+|+++..
T Consensus 122 T~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~a 160 (243)
T PF08961_consen 122 TRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENA 160 (243)
T ss_dssp ---------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333333333333333333
No 380
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=43.20 E-value=2.5e+02 Score=26.32 Aligned_cols=29 Identities=28% Similarity=0.210 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 93 LKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 93 L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
+..++.....+......||..|-.++..+
T Consensus 217 ~~eel~~kt~el~~q~Ee~skLlsql~d~ 245 (596)
T KOG4360|consen 217 GQEELQSKTKELSRQQEENSKLLSQLVDL 245 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333444443333333
No 381
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=43.02 E-value=1.9e+02 Score=23.74 Aligned_cols=53 Identities=25% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.|+.+......+...|..++..+......+..+...-..+...|+..|..+..
T Consensus 65 rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555566666666666666666666666666666555543
No 382
>PRK02224 chromosome segregation protein; Provisional
Probab=43.01 E-value=2.9e+02 Score=26.04 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=4.5
Q ss_pred CccCCCCChhh
Q 039918 14 PVLETGFTADD 24 (140)
Q Consensus 14 p~~~~~f~~~~ 24 (140)
|+-+..|+..+
T Consensus 455 p~C~r~~~~~~ 465 (880)
T PRK02224 455 PECGQPVEGSP 465 (880)
T ss_pred CCCCCcCCCcc
Confidence 44444444333
No 383
>PRK14160 heat shock protein GrpE; Provisional
Probab=42.87 E-value=1.7e+02 Score=23.78 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
.+..|+.++..|..++..|..++..+..++..+.++..-.|.
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666555554444433
No 384
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=42.80 E-value=1.8e+02 Score=23.46 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcc
Q 039918 68 SRWRKKKQLEDLTEELNRSAVEN----QVLKNELNIVLNQCYLLWKENEQLTSEYVALRT----RLSNLYRILGSMQ 136 (140)
Q Consensus 68 SR~RKk~~leeLe~~v~~L~~eN----~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~----~l~~l~~il~~~~ 136 (140)
-|.+|+--.+-+..++..|.... .+|...-..+.........=|..|+.++..|-+ -+..+-+.+..||
T Consensus 117 KR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ 193 (224)
T cd07591 117 KRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQ 193 (224)
T ss_pred HHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777776432 344444445555555667779999999988866 3334444444444
No 385
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=42.80 E-value=1.5e+02 Score=22.58 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQTPS 139 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~~~ 139 (140)
+...|...++............+..+..++..+..+...-...-..|+..+..+...+...+..|
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i 84 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRI 84 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 386
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=42.79 E-value=1.7e+02 Score=23.84 Aligned_cols=64 Identities=28% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIV-----------------------LNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l-----------------------~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
.|++...+-|..++..|..++..|+..+..+ ......+..+-..|++++...+.+..
T Consensus 76 qr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e 155 (202)
T PF06818_consen 76 QRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRRE 155 (202)
T ss_pred HHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHH
Q 039918 127 NLYRILG 133 (140)
Q Consensus 127 ~l~~il~ 133 (140)
....-+.
T Consensus 156 ~q~~~Fe 162 (202)
T PF06818_consen 156 EQRSSFE 162 (202)
T ss_pred HHHHHHH
No 387
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=42.72 E-value=1.2e+02 Score=28.42 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~ 99 (140)
..+..|+..+..|+.++..|..++..
T Consensus 510 ~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 510 KEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666665554
No 388
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=42.52 E-value=1.2e+02 Score=21.41 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIV---LNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l---~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.++.++.++......-...-.++..- .+....++.|-..|+..+.....+|..|+
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 44555555555544444433333221 23445555555666666655555555553
No 389
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.49 E-value=1.5e+02 Score=22.34 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=40.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 039918 57 RMISNRESARRSRWRKKKQLEDLT-------EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT-RLSNL 128 (140)
Q Consensus 57 R~~sNReSArrSR~RKk~~leeLe-------~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~-~l~~l 128 (140)
++...-+.+...-.+|+..++.|. .+|..|..+...+..++..+...+..+ +..++.++..+.. +..++
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~~~~~dl 190 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHEERARDL 190 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666655554 245555555555555555555444333 4456666666643 44555
Q ss_pred HHHHH
Q 039918 129 YRILG 133 (140)
Q Consensus 129 ~~il~ 133 (140)
..+|.
T Consensus 191 k~~l~ 195 (218)
T cd07596 191 KAALK 195 (218)
T ss_pred HHHHH
Confidence 55543
No 390
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=42.27 E-value=1.7e+02 Score=27.02 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039918 113 QLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 113 ~Lr~e~~~L~~~l~~l~~il 132 (140)
.|..++..+...+.....-+
T Consensus 266 ~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 391
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=42.23 E-value=1.7e+02 Score=23.16 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 95 NELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 95 ~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
.++..+..+...|..+|..|+.+...+..-+..|-.||
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im 148 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIM 148 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555444444444
No 392
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=42.18 E-value=3e+02 Score=27.80 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=16.0
Q ss_pred HHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 039918 56 RRMISNRESARRSR-WRKKKQLEDLTEELNRSAVEN 90 (140)
Q Consensus 56 RR~~sNReSArrSR-~RKk~~leeLe~~v~~L~~eN 90 (140)
+--+.+|.+-.|-+ .+++.+..+|+.....+...+
T Consensus 642 ~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~ 677 (1072)
T KOG0979|consen 642 KAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLK 677 (1072)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555544433 334445555554444444433
No 393
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=42.10 E-value=2.3e+02 Score=24.47 Aligned_cols=34 Identities=9% Similarity=-0.044 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
.++..|+.++..++.....+...+..|+.-|..|
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3444555555555555555555555555555544
No 394
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=41.82 E-value=2.1e+02 Score=27.98 Aligned_cols=30 Identities=3% Similarity=-0.116 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
.+.|...+...++.|+..|..+...+..+.
T Consensus 535 q~~~~~~sr~~~~~le~~~~a~qat~d~a~ 564 (961)
T KOG4673|consen 535 QKDYYSNSRALAAALEAQALAEQATNDEAR 564 (961)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344555555555555555555555544443
No 395
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=41.74 E-value=1.5e+02 Score=27.94 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
..+.++..++..|..+-..|..++..+.+....+..-|..|..+...+...|
T Consensus 445 ~~m~e~~s~~~~le~eq~~l~~ey~~~~e~~~e~k~~~~~L~~~~~~~~~ll 496 (707)
T KOG0957|consen 445 SFMQERDSQIIPLEEEQLRLSREYLAETEANQEKKSSQKHLVERFSANEELL 496 (707)
T ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHH
Confidence 3455555666666666666666666655555555555555655555554443
No 396
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=41.54 E-value=2.8e+02 Score=25.33 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 62 RESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 62 ReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
+-.|++--.+-++.+--+..+...|+.+...|..+...+..+...|..+-+.|..-+..|..+..+|.
T Consensus 125 ~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~ 192 (499)
T COG4372 125 LAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLK 192 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 397
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=41.37 E-value=84 Score=22.59 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=2.6
Q ss_pred CCCChhh
Q 039918 18 TGFTADD 24 (140)
Q Consensus 18 ~~f~~~~ 24 (140)
.|.|..+
T Consensus 28 ~g~sv~e 34 (121)
T PRK09413 28 PGMTVSL 34 (121)
T ss_pred CCCCHHH
Confidence 3333333
No 398
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=41.21 E-value=1.9e+02 Score=23.33 Aligned_cols=59 Identities=22% Similarity=0.208 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIV--LNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l--~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
..+-+++.+++.++.+-.+|..-+... .+....++.+-...+.++..+..++..+.+-.
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334456666666666555555544332 34455666677777777777777777775543
No 399
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.12 E-value=2.5e+02 Score=24.59 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
.++..|..+......++..++++|..+..-...+..++..+...|..+.+-|.-
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666677777777777777777777777777666655543
No 400
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=40.76 E-value=3.5e+02 Score=26.26 Aligned_cols=10 Identities=60% Similarity=1.003 Sum_probs=6.6
Q ss_pred Chhhhhhhhh
Q 039918 21 TADDIQEWLS 30 (140)
Q Consensus 21 ~~~~~~~~~s 30 (140)
|..-|.+|+.
T Consensus 83 taa~i~eWle 92 (861)
T KOG1899|consen 83 TAARIAEWLE 92 (861)
T ss_pred HHHHHHHHHh
Confidence 4556777765
No 401
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=40.75 E-value=80 Score=23.27 Aligned_cols=23 Identities=26% Similarity=0.130 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 103 QCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+...|+.||.-|+-++.-|-+.|
T Consensus 80 k~~~LeEENNlLklKievLLDML 102 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554444
No 402
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=40.50 E-value=1.2e+02 Score=20.75 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKEN 111 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN 111 (140)
|...|+.|..|+..|..++....+.+..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888877777766665555
No 403
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=40.44 E-value=69 Score=27.10 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 99 IVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 99 ~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
.+..+...|..||..|+.++..+..++....+++.
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~ 70 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAADQFIA 70 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666555544
No 404
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=40.28 E-value=2.1e+02 Score=23.47 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWK 109 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~ 109 (140)
.+.......|+.+...++.+-..|..+...+......|..
T Consensus 29 ~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~ 68 (246)
T PF00769_consen 29 EESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEE 68 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554444444444444443
No 405
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=40.21 E-value=1.3e+02 Score=21.87 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 96 ELNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 96 ~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
.+.....++..|..+|..|.+++..|++-
T Consensus 58 qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 58 QIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344444444445555555555555444
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.11 E-value=3.4e+02 Score=25.95 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLL-------WKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l-------~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
+++.++..|..+-+.-..++..+.+....+ ...-......-+.|..|+..+.+.+
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333333333 3333333333344444444444444
No 407
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=40.11 E-value=1.9e+02 Score=23.02 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 103 QCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
....+..++..|..++..|..+|.
T Consensus 165 K~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 165 KHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 408
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=39.90 E-value=2.5e+02 Score=24.30 Aligned_cols=67 Identities=22% Similarity=0.323 Sum_probs=40.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 54 KKRRMISNRESARRSRWRKKKQLEDLTEELN-------RSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVA 120 (140)
Q Consensus 54 r~RR~~sNReSArrSR~RKk~~leeLe~~v~-------~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~ 120 (140)
+..-++.+-+--.+-|.-|+-+|+.|++-+. .-..+...|++++..|.+.|..++.-+..|--++..
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~ 92 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQV 92 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhh
Confidence 3334455555555566667777777775443 333345557777777777777777777666544433
No 409
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=39.76 E-value=2.3e+02 Score=23.87 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVE 89 (140)
Q Consensus 74 ~~leeLe~~v~~L~~e 89 (140)
+++..++.++...+..
T Consensus 177 ~ql~~~~~~l~~ae~~ 192 (362)
T TIGR01010 177 NEVKEAEQRLNATKAE 192 (362)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 410
>PHA02562 46 endonuclease subunit; Provisional
Probab=39.31 E-value=2.7e+02 Score=24.56 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
..|+.++..|..++..+..++..+..++..+..+...+
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444334344444444444444333333
No 411
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=39.13 E-value=1.4e+02 Score=26.02 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
.-|..+..-|+.+|+.|=+|+..|...+.
T Consensus 315 KCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 315 KCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred HHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 44666788899999999999999877653
No 412
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=38.95 E-value=1.8e+02 Score=22.37 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=8.3
Q ss_pred CCCCCcCCChHHHHHHHH
Q 039918 41 EGSTRAVYSDDERKKRRM 58 (140)
Q Consensus 41 ~g~~~~~~~~eeRr~RR~ 58 (140)
-|++-.+...-+....+.
T Consensus 82 iGsg~~ae~~~~eAie~l 99 (145)
T COG1730 82 IGSGYYAEKSADEAIEFL 99 (145)
T ss_pred cCCceeeeecHHHHHHHH
Confidence 455555544444444443
No 413
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=38.80 E-value=2.1e+02 Score=23.02 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 96 ELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 96 ~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
....+...+..+-.||..|+.++..|-.....|...
T Consensus 150 A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~ 185 (206)
T PF14988_consen 150 AKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEAR 185 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667888888889999888888887777666544
No 414
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.48 E-value=3.2e+02 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.338 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 65 ARRSRWRKKKQLEDLTEELNRSAVE 89 (140)
Q Consensus 65 ArrSR~RKk~~leeLe~~v~~L~~e 89 (140)
++....-++..+++++.+|+.++..
T Consensus 182 ~~~~~Lp~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 182 KRKKDLPNKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHhc
Confidence 3333333456777778888887775
No 415
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=38.34 E-value=2e+02 Score=22.85 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=17.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 64 SARRSRWRK-KKQLEDLTEELNRSAVENQVLKNE 96 (140)
Q Consensus 64 SArrSR~RK-k~~leeLe~~v~~L~~eN~~L~~~ 96 (140)
||+.-+.+. +..+.+|..++..|..||..|+.-
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544433 234555666666666666655543
No 416
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=38.15 E-value=1.4e+02 Score=20.96 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039918 103 QCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
+...|+.==..|-+....|..+
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444443333
No 417
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=38.01 E-value=64 Score=24.21 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~ 104 (140)
|+.|..+..+|.-++..|..++
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl 26 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKL 26 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445454444444444444443
No 418
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=37.86 E-value=75 Score=25.02 Aligned_cols=17 Identities=35% Similarity=0.276 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039918 84 NRSAVENQVLKNELNIV 100 (140)
Q Consensus 84 ~~L~~eN~~L~~~~~~l 100 (140)
+.|+.++++|+.++..|
T Consensus 27 E~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHCH----------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 419
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.52 E-value=2.9e+02 Score=24.35 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039918 113 QLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 113 ~Lr~e~~~L~~~l~~l~~il 132 (140)
.|++++.+|..++..+..-+
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~ 92 (418)
T TIGR00414 73 EIKKELKELKEELTELSAAL 92 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555544444433
No 420
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=37.41 E-value=1.6e+02 Score=22.59 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 112 EQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 112 ~~Lr~e~~~L~~~l~~l~~il 132 (140)
..|.+++..|...+..+...+
T Consensus 23 e~L~~~i~~l~~~~~e~~~~~ 43 (145)
T COG1730 23 ESLQAQIAALNAAISELQTAI 43 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443333333
No 421
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=37.40 E-value=1.5e+02 Score=21.01 Aligned_cols=31 Identities=35% Similarity=0.327 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 97 LNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 97 ~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
+..+.++...|..||..|+.|...-...+.+
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666666665555544
No 422
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=37.31 E-value=1.6e+02 Score=21.47 Aligned_cols=46 Identities=17% Similarity=0.066 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
.....|..+-..--..+..+.+....|..-|..|-.++..|...+.
T Consensus 26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444555555555666666666666666666666654
No 423
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.25 E-value=3.4e+02 Score=26.01 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
+.|..+|+.|..+...-..+....-+....+..|...|+.++.+|...+..+
T Consensus 11 e~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~ 62 (772)
T KOG0999|consen 11 EKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLA 62 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333332223333344455555555555554444443
No 424
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=37.09 E-value=1.9e+02 Score=24.58 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
+..+-.+++.|+-+..+|.-.-..=.+-...+..|-.+|..++..|..+|..|+.
T Consensus 188 v~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~ 242 (289)
T COG4985 188 VRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRA 242 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444433222222233344566666666666666666666543
No 425
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.06 E-value=3.1e+02 Score=24.54 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 50 DDERKKRRMISNRESARRSRWRKKKQLEDLTE---------------ELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 50 ~eeRr~RR~~sNReSArrSR~RKk~~leeLe~---------------~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
...+...+.+.++.+|-..+. +.++.+.. .+..+..-...+..++..+..+...+..+-..|
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (525)
T TIGR02231 81 RELEAELRDLEDRGDALKALA---KFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIREL 157 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 039918 115 TSEYVALRTRLSNL 128 (140)
Q Consensus 115 r~e~~~L~~~l~~l 128 (140)
+.++..|+.+|..+
T Consensus 158 ~~~l~~l~~~l~~l 171 (525)
T TIGR02231 158 EKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHhh
No 426
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=36.96 E-value=1.6e+02 Score=21.32 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 82 ELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 82 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
++..+-.=|++|......|.++|..|..-+..|...+.
T Consensus 58 Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~ 95 (97)
T PF15136_consen 58 QSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIE 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556777777778888888888888888877664
No 427
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=36.93 E-value=1.2e+02 Score=22.12 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~ 99 (140)
+..+++.+..+|..|..+...
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~ 75 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTA 75 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444443333
No 428
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=36.72 E-value=2.4e+02 Score=28.22 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
.+++||.+-+.+....+.+........+....|..+-+.+.+++..|..++-.+.++
T Consensus 352 k~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 352 KLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 456677777777777777777777777777777777777777777777776665544
No 429
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=36.29 E-value=1.7e+02 Score=23.60 Aligned_cols=45 Identities=27% Similarity=0.195 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
.|++++..+++++..-..|-.+++.=+..==++|..+-+||.-||
T Consensus 51 eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~EFVEIMKeMQ 95 (205)
T PF15079_consen 51 ELKNELREVREELKEKMEEIKQIKDIMDKDFDKLHEFVEIMKEMQ 95 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444444445555555555554
No 430
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.23 E-value=2.9e+02 Score=24.06 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
.++|+.+...|+..+...+.+++.+
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel 30 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEEL 30 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 431
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=36.19 E-value=2.1e+02 Score=22.46 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYL-LWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~-l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
...+..|+.+...|..+-..|..++..+...... ...++.....++..|...-..+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666555543 3344455555555554443333
No 432
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=35.90 E-value=3.4e+02 Score=24.65 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 65 ARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 65 ArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
++.+=.+-+..+..|...|..|+.+-...+..+..+.+........-..|..++..++..|..
T Consensus 293 ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 293 AKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 333334444455555555555555555555555555555554455555555555555555533
No 433
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=35.78 E-value=75 Score=25.88 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLL 107 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 107 (140)
+.++.+...+..+-.+|..|..++..|.+++...
T Consensus 30 eFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~ 63 (212)
T COG3599 30 EFLDDVIDDYEQLLDENEDLEDEIDELKEELKEA 63 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666777777777777777666665554443
No 434
>PRK14160 heat shock protein GrpE; Provisional
Probab=35.70 E-value=2.4e+02 Score=22.95 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
..|+.++..+......+...+...
T Consensus 71 ~~l~~e~~elkd~~lR~~AefeN~ 94 (211)
T PRK14160 71 KKLENELEALKDRLLRTVAEYDNY 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333333
No 435
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=35.45 E-value=1.8e+02 Score=21.26 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 039918 77 EDLTEEL 83 (140)
Q Consensus 77 eeLe~~v 83 (140)
..|..+.
T Consensus 9 ~~l~~~~ 15 (140)
T PRK03947 9 EELAAQL 15 (140)
T ss_pred HHHHHHH
Confidence 3333333
No 436
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=35.33 E-value=4.2e+02 Score=25.59 Aligned_cols=47 Identities=28% Similarity=0.173 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
.+.++.+...|+.+-..++.+=..+..-|..|+.||-.|..++..|+
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555544444555555555555555555555543
No 437
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=35.22 E-value=97 Score=18.20 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~ 101 (140)
.+.+.|+...+.|+.++..|+
T Consensus 8 sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 8 SEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555444443
No 438
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=35.06 E-value=4e+02 Score=26.23 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVENQV---------------LKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN~~---------------L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
+.-++++++|.++.=|+.|-.+ .-.++..+..+...++.|-.++.+-...|++.+.++.+...
T Consensus 53 ~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~ 130 (829)
T KOG2189|consen 53 NEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKY 130 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3456677777777777776655 24566677777777777777777777777777666655443
No 439
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=34.93 E-value=4.1e+02 Score=25.31 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSE 117 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e 117 (140)
+..|..++..|..+...|...+..+...+.....++..+..+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 284 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSD 284 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333333333333
No 440
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=34.87 E-value=1.3e+02 Score=27.56 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
.+|..++..|...|.+|...+...+.+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~ 30 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDK 30 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544444333
No 441
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=34.85 E-value=3.8e+02 Score=26.96 Aligned_cols=53 Identities=23% Similarity=0.155 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+..+-.|+..+..|+.+.+.|...+..+.......+.|-..+.+++..|.+.|
T Consensus 105 ~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 105 ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555666666666666666666666666666555555555555555544444
No 442
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=34.76 E-value=1.9e+02 Score=24.12 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 039918 91 QVLKNELNIVLNQCY 105 (140)
Q Consensus 91 ~~L~~~~~~l~~~~~ 105 (140)
..|..++..|+.+..
T Consensus 69 ~~l~~EN~~Lr~e~~ 83 (283)
T TIGR00219 69 NNLEYENYKLRQELL 83 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555544443
No 443
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=34.74 E-value=1.1e+02 Score=21.87 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=6.7
Q ss_pred CCCChhhhhhhhh
Q 039918 18 TGFTADDIQEWLS 30 (140)
Q Consensus 18 ~~f~~~~~~~~~s 30 (140)
.|+++..+..|..
T Consensus 39 ~gIs~~tl~~W~r 51 (121)
T PRK09413 39 HGVAASQLFLWRK 51 (121)
T ss_pred HCcCHHHHHHHHH
Confidence 4555555555544
No 444
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=34.51 E-value=2.5e+02 Score=22.75 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLW 108 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~ 108 (140)
++.++..+..|..+-..|..+..........+.
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~ 79 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLN 79 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443333333333
No 445
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=34.14 E-value=1.8e+02 Score=25.18 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNEL 97 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~ 97 (140)
.++-...++..|..+|..|+...
T Consensus 42 El~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 42 ELETEKARCKHLQEENRALREAS 64 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 446
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=33.98 E-value=2.5e+02 Score=22.55 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 68 SRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 68 SR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
+-.+=-...+.++.++..|.......-.+...+...+..|..++..|..++.....+...+..=|
T Consensus 163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455677777788888877777777778888888888888888888877777776664443
No 447
>PRK15396 murein lipoprotein; Provisional
Probab=33.90 E-value=1.6e+02 Score=20.37 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLL 107 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 107 (140)
.++.|..+|..|..+-..+...+..++......
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a 58 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAA 58 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665555555444433
No 448
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.83 E-value=3e+02 Score=24.41 Aligned_cols=47 Identities=19% Similarity=0.084 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVA 120 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~ 120 (140)
..+++|...-+.|..--++|....+.|.++.+.+...-..|+.++.+
T Consensus 232 aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 232 AEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34445555555566666667777777777777777777788777776
No 449
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=33.59 E-value=1.7e+02 Score=20.54 Aligned_cols=26 Identities=12% Similarity=-0.128 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVLNQCYLLW 108 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~~~l~ 108 (140)
++-|+.-|..-..+...+......+.
T Consensus 23 ~~LLe~mN~~~~~kY~~~~~~~~~l~ 48 (99)
T PF10046_consen 23 YNLLENMNKATSLKYKKMKDIAAGLE 48 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333333333333333
No 450
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=33.59 E-value=95 Score=19.66 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039918 113 QLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 113 ~Lr~e~~~L~~~l~~l~~il 132 (140)
.|++++..|+.+|..|...+
T Consensus 3 aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555554433
No 451
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=33.57 E-value=2.3e+02 Score=21.95 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=32.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 039918 58 MISNRESARRSRWRKKKQLEDLTEE-------LNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL-RTRLSNLY 129 (140)
Q Consensus 58 ~~sNReSArrSR~RKk~~leeLe~~-------v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L-~~~l~~l~ 129 (140)
+..+-+.|...=.+|+...+.|... +..+..+...+...+..+...+..+ +..++.++..+ ..+..++.
T Consensus 133 ~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~i---s~~~k~E~~rf~~~k~~d~k 209 (236)
T PF09325_consen 133 KLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEI---SENIKKELERFEKEKVKDFK 209 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555444332 3344444444444444444443333 23455555555 23344554
Q ss_pred HHH
Q 039918 130 RIL 132 (140)
Q Consensus 130 ~il 132 (140)
.+|
T Consensus 210 ~~l 212 (236)
T PF09325_consen 210 SML 212 (236)
T ss_pred HHH
Confidence 444
No 452
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=33.50 E-value=2.4e+02 Score=22.34 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
.+..|+.++..+......|...+..|..++..+...-..|.++..
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555554444444444444444443
No 453
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=33.33 E-value=2e+02 Score=27.58 Aligned_cols=47 Identities=17% Similarity=0.050 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
.+++|.-+-..|+.||..-+..--.|.+++..++.|-..+++++..-
T Consensus 330 kVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 330 KVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544555555555555555555555444
No 454
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=33.31 E-value=2.3e+02 Score=26.21 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 79 LTEELNRSAVEN---QVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 79 Le~~v~~L~~eN---~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
|+.+|..|+..- +.+..-++.|.+....|-.++-...-+...+...|++|..|+.-.|
T Consensus 343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tq 403 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQ 403 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 345555554422 2355556677777777777777777777778888888888877554
No 455
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=33.07 E-value=1.8e+02 Score=20.74 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
.+.+...+.....-|..|...+..-+.........+..++.+....+..+..
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~ 85 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKT 85 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666777777777777677777777777888777766665544
No 456
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.90 E-value=5.5e+02 Score=26.22 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 62 RESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 62 ReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
...-..|++|.......|...+..+......+...+..+...+.....+-..+..++.....++.++
T Consensus 411 ~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~da 477 (1141)
T KOG0018|consen 411 IKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDA 477 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 3344556667777777777777777777777777777777777777777777777777666666554
No 457
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=32.88 E-value=1.9e+02 Score=22.11 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q 039918 76 LEDLTEELNRSAV-ENQVLKNELNIVLNQCYLLWKENEQ---LTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 76 leeLe~~v~~L~~-eN~~L~~~~~~l~~~~~~l~~EN~~---Lr~e~~~L~~~l~~l~~il~~ 134 (140)
++.|+.+++.|.. +-..+..++....... =..||.. =+.+...+..++..+...|..
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~G--DlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLG--DRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcC--CcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556666642 4444444444432221 1234442 355556666666666666654
No 458
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=32.87 E-value=1.7e+02 Score=20.42 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
+.+++|...|..|......|....+.+.........|+.+-.+++...-
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a 73 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQA 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 4567777777788777777888888888888888888887777766543
No 459
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=32.86 E-value=1.6e+02 Score=19.91 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.+.++.++.++..+..|-..+..+.+.+.+........=..+-..+..+..-+.++.
T Consensus 32 ~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 466777888888888888888877777777777777666777777777776666654
No 460
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.78 E-value=4.6e+02 Score=25.23 Aligned_cols=60 Identities=13% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL-SNLYRILG 133 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l-~~l~~il~ 133 (140)
.-++.|+.+...++.+...+......+......++.+-..|+.+...+..+. ..+.+++.
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~ 580 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIK 580 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 461
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=32.66 E-value=5.4e+02 Score=26.06 Aligned_cols=64 Identities=25% Similarity=0.243 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 72 KKKQLEDLTEELNRSAVENQ--------------VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~--------------~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
+...+++|+.++..++.+-. .|..+...+...+.....+-..+..++..+...|.....|+.-+
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~ 523 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQ 523 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544443 44444445555555555555555666666666655555555443
No 462
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=32.60 E-value=1.8e+02 Score=20.53 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
.++.|..-+..|+..|..|..++ ..|...|...|.+..
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L-------~~LLesnrq~R~e~~ 71 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQL-------QELLESNRQIRLEFQ 71 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34445555555555554444444 444555555555443
No 463
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.56 E-value=1.7e+02 Score=28.16 Aligned_cols=68 Identities=26% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 67 RSRWRKKKQLEDLTEELNRSAV---ENQVLKNELNIVLNQCYLLWK---ENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 67 rSR~RKk~~leeLe~~v~~L~~---eN~~L~~~~~~l~~~~~~l~~---EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
++|..++..++.|++++..|.. .-....-.......-.+.+.. |-..|+.++.....+-..+..+...
T Consensus 552 ~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ 625 (716)
T KOG4593|consen 552 KARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFAS 625 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=32.43 E-value=2.4e+02 Score=21.93 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
....+.+...|..++..+......+-.+-..|.......+.+|..+-+
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~ 69 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSR 69 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 465
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=32.42 E-value=3.4e+02 Score=23.64 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKEN--------EQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN--------~~Lr~e~~~L~~~l~~l~~ 130 (140)
..|..+...|..+...+..++..+...-..++.+. ..=|++|..|+..|..+..
T Consensus 147 ~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 147 EHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 34444555555555555555554443333333221 1125556666666655543
No 466
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=32.35 E-value=2.6e+02 Score=22.33 Aligned_cols=51 Identities=25% Similarity=0.195 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNI-------VLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~-------l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
-|..++..|..++..|..++.. +..+...+..+...|..++..|+..+...
T Consensus 154 ~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 154 LLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444332 23333334444444444444444444433
No 467
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=32.30 E-value=2.8e+02 Score=22.61 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 039918 68 SRWRKKKQLEDLTEELNRSAVE----NQVLKNELNIVLNQCYLLWKENEQLTSEYVAL-RTRLSN 127 (140)
Q Consensus 68 SR~RKk~~leeLe~~v~~L~~e----N~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L-~~~l~~ 127 (140)
-|.+|+--.+...+.+..|... -.+|...-..+...-...+.=|..|+.|+..| ..|+..
T Consensus 112 KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~~Ri~f 176 (211)
T cd07611 112 KRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGF 176 (211)
T ss_pred HHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3567888888888888888753 23455555556666666677899999999887 334433
No 468
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=32.19 E-value=1.8e+02 Score=23.07 Aligned_cols=34 Identities=38% Similarity=0.429 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLL 107 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 107 (140)
+.+..|+.+...|..+|..|..+...+.+.+..|
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~L 144 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRAL 144 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554444443
No 469
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=32.17 E-value=3.9e+02 Score=24.24 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
.-+.+|+.|-..|..++..-.++....+.+...|..++.+=+.+-..
T Consensus 139 Dlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 139 DLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888888999999888888888888888887777666555433
No 470
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=32.12 E-value=4e+02 Score=24.35 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVA 120 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~ 120 (140)
.|....+-+...+..+......+..++..+..++..+...-..|+.+++.
T Consensus 443 qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 443 QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666667777777777777777777777777777777776654
No 471
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=32.11 E-value=2.5e+02 Score=22.07 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKE-NEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~E-N~~Lr~e~~~L~~~l~~l~~ 130 (140)
+..++.|+..++.|......+.+.+..+..++.+--.= -..|..++.+|..-+..+.+
T Consensus 78 ~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~ 136 (157)
T COG3352 78 KEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIK 136 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 472
>PRK11546 zraP zinc resistance protein; Provisional
Probab=31.87 E-value=2.4e+02 Score=21.72 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKE-------NEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~E-------N~~Lr~e~~~L~~~l~~l 128 (140)
.-.+....+-..|+.++-.-+.++..|..- -..|..|+..|+.+|.+.
T Consensus 54 ~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 54 KIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555432 345556666666665554
No 473
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=31.83 E-value=3.4e+02 Score=23.46 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
.|..++..|..+...+..+|...+..+..|...|..+.+...-+|
T Consensus 105 ~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq 149 (355)
T PF09766_consen 105 RLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQ 149 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455566666666667777777777777777777776655554433
No 474
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=31.82 E-value=3.7e+02 Score=23.93 Aligned_cols=49 Identities=14% Similarity=-0.016 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 85 RSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 85 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
.|......+-..+..-..+|..+..|-.+++--+..|+...+.|.+-|.
T Consensus 151 tLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~ 199 (405)
T KOG2010|consen 151 TLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLR 199 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444445555555555555443
No 475
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.80 E-value=3.5e+02 Score=24.94 Aligned_cols=33 Identities=21% Similarity=0.094 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQ 113 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~ 113 (140)
.+-...+.+|..|..++..-.++..+|-..|..
T Consensus 285 ~Ee~~~reen~rlQrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 285 AEEVDHREENERLQRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445556666665555544444444444433
No 476
>COG5570 Uncharacterized small protein [Function unknown]
Probab=31.76 E-value=1e+02 Score=20.19 Aligned_cols=50 Identities=18% Similarity=0.067 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
|+.+|+.+-..|..+.+.-.+.=..=...+..|....-+|+.+++.|.++
T Consensus 6 hl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 6 HLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455544444444433322211111123344445555666666666543
No 477
>PHA03162 hypothetical protein; Provisional
Probab=31.72 E-value=80 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~ 104 (140)
|+.|..|..+|.-++..|..++
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444
No 478
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.71 E-value=2.2e+02 Score=21.30 Aligned_cols=49 Identities=20% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
...++.|+.++.......+.-...+..|...+..+..++..+...+..+
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v 88 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV 88 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
No 479
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=31.63 E-value=2.7e+02 Score=22.26 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
+++|+.++.....+-..+...+......+..+..--..+...+.+.+.++..+..-|.
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
No 480
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=31.63 E-value=4.6e+02 Score=26.40 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQT 137 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~ 137 (140)
.|.++.++-.+.-++.|...-..-+.-+....++...-+..-..-..++..|+++|++-.+.|..-|+
T Consensus 344 lR~QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQT 411 (1480)
T COG3096 344 LRQQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQT 411 (1480)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
No 481
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=31.57 E-value=1.7e+02 Score=19.98 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIV-----LNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l-----~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
+.+|+.++.++..+-..|..++..+ ......|..+-..|-..+..=..++..|+.+
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~dv 79 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLYDV 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 482
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.43 E-value=3.7e+02 Score=23.75 Aligned_cols=76 Identities=25% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 039918 58 MISNRESARRSRWRK-----KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYL----------LWKENEQLTSEYVALR 122 (140)
Q Consensus 58 ~~sNReSArrSR~RK-----k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~----------l~~EN~~Lr~e~~~L~ 122 (140)
...|.+--+.+-.++ -..+-+|..+...+..+-..|+.+.+.+..++.. +..+-..|+.++..|.
T Consensus 7 ir~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 86 (425)
T PRK05431 7 IRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALE 86 (425)
T ss_pred HHhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 039918 123 TRLSNLYRILG 133 (140)
Q Consensus 123 ~~l~~l~~il~ 133 (140)
..+..+..-+.
T Consensus 87 ~~~~~~~~~~~ 97 (425)
T PRK05431 87 AELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHH
No 483
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=31.32 E-value=18 Score=28.18 Aligned_cols=46 Identities=26% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
..|..+|..|..+|.-|+.++.........-..+...|-.++..|+
T Consensus 25 qkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lq 70 (181)
T PF09311_consen 25 QKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQ 70 (181)
T ss_dssp HHHHT-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHH
No 484
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=31.29 E-value=5e+02 Score=25.29 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
+..++.-..-+..|+.+|..|+.++..-..+...+...-..|..++..+..+.....+.+.
T Consensus 600 rKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~ 660 (786)
T PF05483_consen 600 RKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQ 660 (786)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 485
>PHA03155 hypothetical protein; Provisional
Probab=31.27 E-value=78 Score=23.71 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039918 97 LNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 97 ~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
+..|..++..|..||..|+.++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 486
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=31.07 E-value=55 Score=23.64 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 53 RKKRRMISNRESARRSRWRKKKQLEDLTEEL-NRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 53 Rr~RR~~sNReSArrSR~RKk~~leeLe~~v-~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
+....-..-|..|-..+.+=...+++|...+ .....=...=+.+...+..+...|..+-......+..|+..|..|..+
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhccCCCC
Q 039918 132 LGSMQTPSQ 140 (140)
Q Consensus 132 l~~~~~~~~ 140 (140)
|..|...+.
T Consensus 81 ~~~~~~~~~ 89 (100)
T PF06428_consen 81 MESMESESD 89 (100)
T ss_dssp TTT------
T ss_pred HHHcccccc
No 487
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=30.99 E-value=2.7e+02 Score=24.93 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLN--QCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~--~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
.++-++.++..|+.+...+...+..+.. .-..+..+-..|..++..|..++..|..+|.-+
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l 226 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDL 226 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF10351 Apt1: Golgi-body localisation protein domain; InterPro: IPR019443 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This domain is found in fungi, metazoans and plants. These include FMP27 and "maize" protein APT1 and Arabidopsis homologues SABRE and KIP. APT1 is required for pollen tube growth. It is a Golgi-localised protein and appears to regulate vesicular trafficking []. SABRE and KIP are APT1 homologues and they are involved in the elongation of root cortex cells and pollen tubes respectively.
Probab=30.79 E-value=3.7e+02 Score=23.59 Aligned_cols=84 Identities=18% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 039918 47 VYSDDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLL----WKENEQLTSEYVALR 122 (140)
Q Consensus 47 ~~~~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l----~~EN~~Lr~e~~~L~ 122 (140)
++..+.++..|+.+-+-+...+ -+.++...|..|+.+...|..-...+..+...| ..+=..++.++....
T Consensus 69 ~ep~~k~~~~kl~kl~~~~d~~------dl~~~~~~V~~LQ~~ir~l~~~~~~~~~~~~~L~~~~~~~~~~l~~e~~~~~ 142 (457)
T PF10351_consen 69 VEPEKKERSEKLEKLMFSSDFS------DLEGLDDRVVSLQNRIRQLIEIERELEFRDKLLDDEGREDLLELRKELQRCS 142 (457)
T ss_pred CCchhhHHHHHHHhheehhccC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhcc
Q 039918 123 TRLSNLYRILGSMQ 136 (140)
Q Consensus 123 ~~l~~l~~il~~~~ 136 (140)
.+|.-+..++...|
T Consensus 143 ~eL~llm~~i~~~~ 156 (457)
T PF10351_consen 143 LELYLLMKAIKSSQ 156 (457)
T ss_pred HHHHHHHHHHHHHh
No 489
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.72 E-value=3.8e+02 Score=24.30 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQT 137 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~ 137 (140)
.++.+++...+.|-.+|-.|......|...+.....+...+..++...+..|..++--+.--|.
T Consensus 58 ~~lq~~e~ra~~L~~q~~~L~~~~~NLtkeLN~t~~~K~~imq~ll~~rrdl~rinasfrQcq~ 121 (442)
T PF06637_consen 58 SRLQATEQRADRLYSQVVGLRASQANLTKELNLTTRAKDAIMQMLLNARRDLDRINASFRQCQA 121 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhchhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhh
No 490
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=30.62 E-value=2.4e+02 Score=27.71 Aligned_cols=56 Identities=25% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
.+++...+.+++.+..+|..+++-...+.+-...+......|+..+...+.++..+
T Consensus 71 sq~L~~~~~r~n~~~~dd~~l~~l~~ql~q~~r~i~eq~~~lr~sL~l~~~~~~q~ 126 (835)
T COG3264 71 SQALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQL 126 (835)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
No 491
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=30.62 E-value=2.4e+02 Score=21.41 Aligned_cols=60 Identities=22% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
..+++=..++..|......-...+..+.+..+.+..++..++.++......+..+..-|.
T Consensus 56 ~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~ 115 (177)
T PF13870_consen 56 EKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELY 115 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=30.61 E-value=1.4e+02 Score=27.39 Aligned_cols=41 Identities=15% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
+..|+.+|..|..++..|.+.+.....+-..|++++..|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 493
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=30.55 E-value=44 Score=23.78 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
++...=+..+..+...|..++..|..+...|..+...++.....|...|....+...-+
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~ 79 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEI 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHH
No 494
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=30.54 E-value=2.2e+02 Score=20.85 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
.+.......++.++..++.+..............|..-..-....-..+..|+..+..+..-+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~ 79 (132)
T PF07926_consen 13 QRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELK 79 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK11239 hypothetical protein; Provisional
Probab=30.51 E-value=1.1e+02 Score=25.22 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~ 104 (140)
....|+.+|..|+.+...|+..+..+..++
T Consensus 184 ~~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 184 VDGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 496
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.50 E-value=2.6e+02 Score=21.72 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
+-++.|-..-..|......| .+-..+..++..|..+...|..++..+-..|..++..|..+
T Consensus 2 ~~~~~L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 2 ELAEDLIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.48 E-value=3.1e+02 Score=22.55 Aligned_cols=52 Identities=25% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
|+..-..++..++.|-++|+..+..-..+..-|. .||+++.+++.++..|.+
T Consensus 43 ~~s~k~eel~~~~~eEe~LKs~~q~K~~~aanL~----~lr~Ql~emee~~~~llr 94 (211)
T COG3167 43 YLSGKLEELEELEAEEEELKSTYQQKAIQAANLE----ALRAQLAEMEERFDILLR 94 (211)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHhchH----HHHHHHHHHHHHHHHHHH
No 498
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.19 E-value=2.2e+02 Score=20.71 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 58 MISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 58 ~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
|-.||.+++-.++-...|--.|..+.+. ..|..++..+..+......+...+
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~ae~ei-----~~l~~~l~~l~~~~~~~~~~~~~~ 106 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLKAEQEI-----ERLHRKLDALREKLGELLERDQER 106 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHhHHHHHHHHHh
No 499
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=30.10 E-value=1.6e+02 Score=19.31 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVL----NQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQTP 138 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~----~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~~ 138 (140)
+..-+.++..-...|..+......++..+- ..+-....+=..++..+..|+..|..+...+..++.+
T Consensus 17 ~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~~~ 87 (87)
T PF08700_consen 17 KNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQET 87 (87)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 500
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=29.92 E-value=1.9e+02 Score=24.39 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 91 QVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 91 ~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
..|..++..+.++...+..|...++.++..++.++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 2 SELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!