Query 039918
Match_columns 140
No_of_seqs 136 out of 693
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 1.7E-15 5.8E-20 98.0 6.2 52 53-104 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.4 6.9E-13 2.4E-17 87.4 9.0 53 52-104 1-53 (63)
3 2dgc_A Protein (GCN4); basic d 99.4 7.3E-13 2.5E-17 87.7 6.7 57 48-104 4-60 (63)
4 1t2k_D Cyclic-AMP-dependent tr 99.3 7.1E-12 2.4E-16 81.8 8.8 51 53-103 1-51 (61)
5 1jnm_A Proto-oncogene C-JUN; B 99.3 1.3E-11 4.5E-16 80.9 7.4 51 53-103 1-51 (62)
6 1gd2_E Transcription factor PA 99.1 6.6E-10 2.3E-14 75.0 8.1 61 54-114 9-69 (70)
7 1ci6_A Transcription factor AT 99.0 1.1E-09 3.7E-14 72.2 7.3 59 53-118 2-60 (63)
8 1gu4_A CAAT/enhancer binding p 98.8 2.7E-08 9.4E-13 68.3 9.2 57 46-102 8-64 (78)
9 1hjb_A Ccaat/enhancer binding 98.8 3.5E-08 1.2E-12 69.0 9.6 55 46-100 8-62 (87)
10 3a5t_A Transcription factor MA 98.6 9.2E-10 3.1E-14 79.8 -3.8 67 52-132 36-102 (107)
11 2wt7_B Transcription factor MA 98.3 6.7E-06 2.3E-10 57.8 9.9 62 52-127 26-87 (90)
12 2jee_A YIIU; FTSZ, septum, coi 97.1 0.0084 2.9E-07 41.2 10.1 56 75-130 21-76 (81)
13 1skn_P DNA-binding domain of S 96.8 0.00068 2.3E-08 47.6 2.5 32 50-81 59-90 (92)
14 2oqq_A Transcription factor HY 96.7 0.0059 2E-07 37.1 6.1 39 73-118 2-40 (42)
15 1deb_A APC protein, adenomatou 96.0 0.038 1.3E-06 34.9 7.1 48 76-123 5-52 (54)
16 3hnw_A Uncharacterized protein 95.8 0.11 3.7E-06 38.4 10.1 59 72-130 73-131 (138)
17 1hjb_A Ccaat/enhancer binding 95.4 0.058 2E-06 37.3 6.7 43 95-137 36-78 (87)
18 2jee_A YIIU; FTSZ, septum, coi 95.3 0.22 7.5E-06 34.1 9.5 55 74-128 6-60 (81)
19 1ci6_A Transcription factor AT 95.1 0.11 3.7E-06 33.5 7.0 42 93-134 21-62 (63)
20 1t2k_D Cyclic-AMP-dependent tr 95.0 0.1 3.6E-06 33.1 6.7 40 94-133 21-60 (61)
21 2w6a_A ARF GTPase-activating p 94.9 0.17 5.8E-06 32.9 7.4 41 76-116 22-62 (63)
22 3s9g_A Protein hexim1; cyclin 94.7 0.26 9E-06 35.0 8.6 47 76-122 39-92 (104)
23 2wt7_A Proto-oncogene protein 94.6 0.17 5.9E-06 32.4 7.0 40 94-133 22-61 (63)
24 1gu4_A CAAT/enhancer binding p 94.0 0.11 3.6E-06 35.2 5.2 39 95-133 36-74 (78)
25 3he5_A Synzip1; heterodimeric 94.0 0.33 1.1E-05 29.6 6.8 44 75-118 4-47 (49)
26 3a7p_A Autophagy protein 16; c 93.5 0.97 3.3E-05 34.2 10.3 94 23-118 38-133 (152)
27 1jnm_A Proto-oncogene C-JUN; B 93.2 0.13 4.5E-06 32.8 4.4 40 94-133 21-60 (62)
28 3hnw_A Uncharacterized protein 93.1 1.6 5.5E-05 32.0 10.8 55 73-127 81-135 (138)
29 2oxj_A Hybrid alpha/beta pepti 92.7 0.21 7.3E-06 28.9 4.3 27 75-101 2-28 (34)
30 1go4_E MAD1 (mitotic arrest de 92.6 1.7 5.9E-05 30.6 9.9 63 75-137 13-96 (100)
31 2c9l_Y EB1, zebra, BZLF1 trans 92.6 0.94 3.2E-05 29.0 7.7 40 56-95 4-43 (63)
32 3vmx_A Voltage-gated hydrogen 92.6 0.54 1.8E-05 29.2 6.4 39 80-118 3-41 (48)
33 3m48_A General control protein 92.4 0.18 6.1E-06 29.1 3.7 26 76-101 2-27 (33)
34 2kz5_A Transcription factor NF 91.8 0.011 3.7E-07 41.4 -2.4 24 51-74 64-87 (91)
35 2eqb_B RAB guanine nucleotide 91.7 1.8 6.3E-05 30.4 9.1 52 74-125 12-63 (97)
36 1kd8_B GABH BLL, GCN4 acid bas 91.3 0.53 1.8E-05 27.5 5.0 28 75-102 2-29 (36)
37 3iv1_A Tumor susceptibility ge 91.2 2.4 8.3E-05 28.6 9.3 63 70-132 14-76 (78)
38 3c3f_A Alpha/beta peptide with 90.6 0.49 1.7E-05 27.3 4.3 27 75-101 2-28 (34)
39 3a2a_A Voltage-gated hydrogen 90.5 0.99 3.4E-05 28.9 6.1 39 80-118 10-48 (58)
40 3c3g_A Alpha/beta peptide with 89.8 0.63 2.1E-05 26.7 4.3 26 76-101 2-27 (33)
41 2dgc_A Protein (GCN4); basic d 89.3 0.62 2.1E-05 30.0 4.6 33 94-126 29-61 (63)
42 3cvf_A Homer-3, homer protein 89.1 2.4 8.2E-05 28.7 7.6 49 76-124 8-56 (79)
43 2xdj_A Uncharacterized protein 89.0 3.9 0.00013 27.7 9.0 39 76-114 22-60 (83)
44 3m91_A Proteasome-associated A 89.0 2.7 9.3E-05 26.1 7.2 25 76-100 11-35 (51)
45 1gd2_E Transcription factor PA 89.0 0.97 3.3E-05 29.8 5.4 35 93-127 34-68 (70)
46 2bni_A General control protein 88.7 0.66 2.3E-05 26.8 3.9 27 75-101 2-28 (34)
47 1p9i_A Cortexillin I/GCN4 hybr 88.7 0.73 2.5E-05 25.6 3.9 23 103-125 7-29 (31)
48 1kd8_A GABH AIV, GCN4 acid bas 88.7 0.78 2.7E-05 26.8 4.2 28 75-102 2-29 (36)
49 2v66_B Nuclear distribution pr 88.6 5.2 0.00018 28.6 9.8 55 76-130 37-91 (111)
50 3a7p_A Autophagy protein 16; c 88.5 5.3 0.00018 30.1 9.9 32 90-121 98-129 (152)
51 2dfs_A Myosin-5A; myosin-V, in 88.1 8.7 0.0003 36.5 13.3 19 104-122 1025-1043(1080)
52 1uo4_A General control protein 87.9 0.8 2.7E-05 26.5 3.9 27 75-101 2-28 (34)
53 2zxx_A Geminin; coiled-coil, c 87.8 1.2 4.2E-05 30.2 5.4 37 87-123 33-69 (79)
54 2wq1_A General control protein 87.7 1.1 3.6E-05 25.8 4.3 26 76-101 2-27 (33)
55 2yy0_A C-MYC-binding protein; 87.7 1.4 4.9E-05 27.4 5.3 15 82-96 20-34 (53)
56 3ra3_A P1C; coiled coil domain 87.7 0.8 2.7E-05 24.9 3.5 24 106-129 4-27 (28)
57 3cve_A Homer protein homolog 1 87.6 4.6 0.00016 26.8 9.4 48 77-124 3-50 (72)
58 2hy6_A General control protein 87.5 0.89 3E-05 26.2 3.9 28 75-102 2-29 (34)
59 3m9b_A Proteasome-associated A 87.4 0.83 2.8E-05 37.1 5.1 42 74-115 54-95 (251)
60 1t6f_A Geminin; coiled-coil, c 87.1 1.3 4.4E-05 25.9 4.5 30 87-116 6-35 (37)
61 3oja_B Anopheles plasmodium-re 87.0 8.1 0.00028 32.8 11.5 39 78-116 513-551 (597)
62 3s9g_A Protein hexim1; cyclin 86.5 6 0.00021 28.0 8.5 30 73-102 64-93 (104)
63 4emc_A Monopolin complex subun 86.3 4.1 0.00014 31.7 8.4 52 74-125 13-64 (190)
64 2oxj_A Hybrid alpha/beta pepti 86.2 1.5 5.2E-05 25.2 4.4 29 97-125 3-31 (34)
65 3m48_A General control protein 85.8 1 3.6E-05 25.8 3.5 28 98-125 3-30 (33)
66 4h22_A Leucine-rich repeat fli 85.0 8.3 0.00028 27.3 9.5 14 48-61 5-18 (103)
67 2yy0_A C-MYC-binding protein; 84.9 2.2 7.6E-05 26.5 5.2 27 90-116 21-47 (53)
68 2wvr_A Geminin; DNA replicatio 84.8 11 0.00039 29.6 10.3 45 87-131 114-158 (209)
69 3efg_A Protein SLYX homolog; x 84.8 3.8 0.00013 27.3 6.6 49 74-129 14-62 (78)
70 2dfs_A Myosin-5A; myosin-V, in 84.8 19 0.00063 34.3 13.6 58 76-133 986-1047(1080)
71 3o0z_A RHO-associated protein 84.8 11 0.00039 28.7 11.3 43 77-119 37-79 (168)
72 3m91_A Proteasome-associated A 84.7 5.2 0.00018 24.8 7.0 36 81-116 9-44 (51)
73 2oqq_A Transcription factor HY 84.6 4.8 0.00016 24.2 6.4 32 101-132 9-40 (42)
74 1dh3_A Transcription factor CR 84.5 1.2 4.1E-05 27.8 3.8 31 95-125 22-52 (55)
75 3s4r_A Vimentin; alpha-helix, 84.3 7.8 0.00027 26.4 9.6 31 98-128 59-89 (93)
76 1dip_A Delta-sleep-inducing pe 84.2 0.77 2.6E-05 31.0 2.9 28 89-116 16-43 (78)
77 3mq7_A Bone marrow stromal ant 83.5 9.2 0.00032 27.7 8.6 37 90-126 73-109 (121)
78 2lw1_A ABC transporter ATP-bin 83.1 8.1 0.00028 25.8 8.8 60 72-131 20-85 (89)
79 1go4_E MAD1 (mitotic arrest de 83.1 7.4 0.00025 27.3 7.8 56 74-129 19-95 (100)
80 4h22_A Leucine-rich repeat fli 83.0 8.4 0.00029 27.3 8.1 31 81-111 23-53 (103)
81 3mq7_A Bone marrow stromal ant 82.8 7.9 0.00027 28.1 8.0 37 82-118 72-108 (121)
82 3efg_A Protein SLYX homolog; x 82.6 4.8 0.00017 26.8 6.4 32 105-136 31-62 (78)
83 3m9b_A Proteasome-associated A 82.5 1.5 5E-05 35.6 4.5 36 101-136 60-95 (251)
84 1nkp_B MAX protein, MYC proto- 82.5 2 7E-05 28.3 4.5 12 113-124 58-69 (83)
85 3o0z_A RHO-associated protein 82.2 15 0.0005 28.0 12.4 65 57-128 73-137 (168)
86 3c3g_A Alpha/beta peptide with 82.1 3 0.0001 23.9 4.4 28 98-125 3-30 (33)
87 2fxo_A Myosin heavy chain, car 82.1 11 0.00039 26.7 10.8 60 76-135 64-123 (129)
88 3ra3_B P2F; coiled coil domain 81.6 1.4 4.8E-05 23.9 2.8 22 107-128 5-26 (28)
89 3c3f_A Alpha/beta peptide with 81.5 3.2 0.00011 23.9 4.4 29 97-125 3-31 (34)
90 1fmh_A General control protein 81.3 3.6 0.00012 23.1 4.5 27 77-103 4-30 (33)
91 1gk6_A Vimentin; intermediate 81.2 7.8 0.00027 24.2 7.2 50 77-126 3-52 (59)
92 1p9i_A Cortexillin I/GCN4 hybr 81.2 2.7 9.2E-05 23.3 3.9 27 77-103 2-28 (31)
93 1i84_S Smooth muscle myosin he 81.0 17 0.00057 34.5 11.7 27 102-128 913-939 (1184)
94 1nlw_A MAD protein, MAX dimeri 81.0 4 0.00014 27.1 5.6 30 74-103 47-76 (80)
95 2r2v_A GCN4 leucine zipper; co 80.9 3.2 0.00011 23.9 4.3 28 75-102 2-29 (34)
96 3oja_B Anopheles plasmodium-re 80.2 17 0.00059 30.8 10.7 56 77-132 505-560 (597)
97 2v71_A Nuclear distribution pr 79.9 19 0.00064 27.8 12.8 58 76-133 90-147 (189)
98 2wuj_A Septum site-determining 79.0 2 6.9E-05 26.9 3.4 27 74-100 27-53 (57)
99 3u1c_A Tropomyosin alpha-1 cha 78.7 13 0.00046 25.5 9.9 54 74-127 23-76 (101)
100 1deb_A APC protein, adenomatou 78.4 7.3 0.00025 24.4 5.7 40 98-137 6-52 (54)
101 2v66_B Nuclear distribution pr 77.4 17 0.00057 25.9 11.6 50 80-129 34-83 (111)
102 1kd8_B GABH BLL, GCN4 acid bas 77.4 6 0.00021 23.0 4.8 30 98-127 4-33 (36)
103 1wt6_A Myotonin-protein kinase 77.1 14 0.00049 25.0 7.9 57 61-127 14-70 (81)
104 2j5u_A MREC protein; bacterial 77.0 1.1 3.9E-05 35.6 2.2 32 86-117 24-58 (255)
105 1ik9_A DNA repair protein XRCC 76.7 18 0.00061 28.2 9.0 39 76-114 134-172 (213)
106 1a93_B MAX protein, coiled coi 76.6 5 0.00017 23.1 4.2 27 95-121 7-33 (34)
107 1nkp_B MAX protein, MYC proto- 76.5 11 0.00036 24.7 6.6 24 103-126 55-78 (83)
108 2oa5_A Hypothetical protein BQ 76.4 1.6 5.3E-05 31.4 2.5 26 74-99 8-33 (110)
109 3tnu_B Keratin, type II cytosk 76.4 6.2 0.00021 28.1 5.8 28 75-102 44-71 (129)
110 1ic2_A Tropomyosin alpha chain 76.1 14 0.00047 24.2 8.2 54 74-127 20-73 (81)
111 4etp_A Kinesin-like protein KA 76.0 13 0.00044 31.4 8.5 21 78-98 7-27 (403)
112 3u06_A Protein claret segregat 75.4 12 0.00041 31.8 8.2 49 86-134 8-56 (412)
113 3vkg_A Dynein heavy chain, cyt 75.1 17 0.00058 38.6 10.5 54 82-135 2029-2082(3245)
114 3u59_A Tropomyosin beta chain; 74.8 17 0.00059 24.7 9.7 52 74-125 23-74 (101)
115 3q8t_A Beclin-1; autophagy, AT 74.8 17 0.0006 24.8 8.6 55 74-128 25-79 (96)
116 1uo4_A General control protein 74.6 4.6 0.00016 23.2 3.7 28 98-125 4-31 (34)
117 1nkp_A C-MYC, MYC proto-oncoge 74.6 12 0.0004 25.1 6.5 15 107-121 71-85 (88)
118 2ocy_A RAB guanine nucleotide 74.5 18 0.00061 27.1 8.1 26 103-128 109-134 (154)
119 1dip_A Delta-sleep-inducing pe 74.4 4 0.00014 27.5 3.9 25 77-101 18-42 (78)
120 2bni_A General control protein 73.9 4.3 0.00015 23.3 3.5 29 98-126 4-32 (34)
121 1gk7_A Vimentin; intermediate 73.4 6.2 0.00021 23.1 4.2 28 92-119 10-37 (39)
122 1am9_A Srebp-1A, protein (ster 73.3 6.7 0.00023 25.9 5.0 64 63-127 12-75 (82)
123 4etp_A Kinesin-like protein KA 73.1 12 0.00042 31.5 7.7 42 73-114 9-50 (403)
124 1i84_S Smooth muscle myosin he 72.4 32 0.0011 32.6 11.1 22 108-129 912-933 (1184)
125 3ol1_A Vimentin; structural ge 72.0 23 0.00079 24.9 10.3 21 109-129 83-103 (119)
126 3swf_A CGMP-gated cation chann 71.5 20 0.00067 23.9 7.8 49 77-128 3-51 (74)
127 2hy6_A General control protein 71.2 9.1 0.00031 22.0 4.4 29 98-126 4-32 (34)
128 2wuj_A Septum site-determining 70.9 5.1 0.00017 25.0 3.7 28 98-125 30-57 (57)
129 3oja_A Leucine-rich immune mol 70.7 45 0.0015 27.7 12.3 44 85-128 432-475 (487)
130 3s4r_A Vimentin; alpha-helix, 70.3 12 0.00042 25.4 5.9 27 77-103 19-45 (93)
131 3nmd_A CGMP dependent protein 70.2 21 0.00071 23.6 6.7 25 73-97 39-63 (72)
132 3tnu_A Keratin, type I cytoske 69.2 28 0.00094 24.7 10.1 6 53-58 41-46 (131)
133 3u06_A Protein claret segregat 69.1 19 0.00067 30.4 8.1 46 75-120 11-56 (412)
134 2lz1_A Nuclear factor erythroi 69.1 0.071 2.4E-06 37.2 -5.8 22 52-73 65-86 (90)
135 3u1c_A Tropomyosin alpha-1 cha 69.0 25 0.00084 24.1 10.5 13 116-128 86-98 (101)
136 3q0x_A Centriole protein; cent 68.5 33 0.0011 27.2 8.8 47 52-104 162-208 (228)
137 1wt6_A Myotonin-protein kinase 68.4 25 0.00084 23.8 7.9 34 73-106 37-70 (81)
138 3i00_A HIP-I, huntingtin-inter 67.9 26 0.00088 25.1 7.4 47 71-124 37-83 (120)
139 2xv5_A Lamin-A/C; structural p 67.6 23 0.00079 23.2 8.6 50 76-125 7-56 (74)
140 1wlq_A Geminin; coiled-coil; 2 67.1 27 0.00092 23.7 9.1 44 86-133 36-79 (83)
141 3bas_A Myosin heavy chain, str 67.0 25 0.00087 23.5 12.9 55 72-126 33-87 (89)
142 1nkp_A C-MYC, MYC proto-oncoge 66.5 19 0.00065 24.1 6.1 11 74-84 23-33 (88)
143 1ic2_A Tropomyosin alpha chain 66.4 24 0.00083 23.0 9.6 51 80-130 19-69 (81)
144 3e98_A GAF domain of unknown f 66.1 29 0.001 27.3 8.1 44 79-126 70-113 (252)
145 1nlw_A MAD protein, MAX dimeri 65.9 10 0.00035 25.1 4.6 20 106-125 58-77 (80)
146 3tnu_B Keratin, type II cytosk 65.7 32 0.0011 24.2 10.1 12 49-60 35-46 (129)
147 3swy_A Cyclic nucleotide-gated 65.3 20 0.00069 21.7 7.0 43 78-123 2-44 (46)
148 3oja_A Leucine-rich immune mol 65.0 59 0.002 26.9 11.2 48 86-133 426-473 (487)
149 2v4h_A NF-kappa-B essential mo 64.9 35 0.0012 24.3 12.3 67 59-125 30-106 (110)
150 1fmh_A General control protein 64.6 12 0.00041 20.9 3.9 28 97-124 3-30 (33)
151 1uii_A Geminin; human, DNA rep 64.1 31 0.0011 23.4 8.6 33 87-119 45-77 (83)
152 2oto_A M protein; helical coil 63.9 39 0.0013 24.5 9.6 31 77-107 53-83 (155)
153 1kd8_A GABH AIV, GCN4 acid bas 63.8 19 0.00065 20.9 5.5 29 99-127 5-33 (36)
154 2w83_C C-JUN-amino-terminal ki 63.7 30 0.001 23.2 9.7 54 77-130 5-65 (77)
155 4b4t_K 26S protease regulatory 63.5 16 0.00056 31.0 6.5 44 93-136 47-90 (428)
156 1joc_A EEA1, early endosomal a 63.1 27 0.00094 24.6 6.8 44 73-116 10-53 (125)
157 3nmd_A CGMP dependent protein 62.8 26 0.00088 23.2 6.0 23 97-119 42-64 (72)
158 3i00_A HIP-I, huntingtin-inter 62.8 39 0.0013 24.1 9.6 23 74-96 15-37 (120)
159 3w03_C DNA repair protein XRCC 62.8 14 0.00049 28.4 5.5 27 75-101 153-179 (184)
160 2ve7_C Kinetochore protein NUF 62.5 11 0.00037 30.0 4.9 53 49-101 116-175 (250)
161 2wq1_A General control protein 62.5 17 0.0006 20.6 4.4 27 99-125 4-30 (33)
162 3cvf_A Homer-3, homer protein 62.5 32 0.0011 23.0 8.4 47 74-120 27-73 (79)
163 1jcd_A Major outer membrane li 61.4 26 0.00089 21.7 7.5 28 75-102 5-32 (52)
164 3u59_A Tropomyosin beta chain; 59.5 38 0.0013 22.9 10.5 11 117-127 87-97 (101)
165 3m0d_C TNF receptor-associated 59.1 31 0.0011 21.8 9.2 59 74-132 6-64 (65)
166 3a7o_A Autophagy protein 16; c 59.0 37 0.0013 22.6 7.3 49 75-123 26-74 (75)
167 1g6u_A Domain swapped dimer; d 58.9 27 0.00091 20.9 6.6 27 102-128 20-46 (48)
168 3trt_A Vimentin; cytoskeleton, 58.5 33 0.0011 21.8 7.4 39 76-114 37-75 (77)
169 1x8y_A Lamin A/C; structural p 58.5 37 0.0013 22.5 9.6 54 73-126 27-80 (86)
170 1lwu_C Fibrinogen gamma chain; 58.0 38 0.0013 28.0 7.7 16 113-128 37-52 (323)
171 1wle_A Seryl-tRNA synthetase; 57.7 92 0.0031 27.1 10.4 25 106-130 120-144 (501)
172 2e7s_A RAB guanine nucleotide 57.0 14 0.00047 27.3 4.3 50 76-125 34-83 (135)
173 3he5_B Synzip2; heterodimeric 56.8 30 0.001 21.0 7.1 36 93-128 8-43 (52)
174 3jsv_C NF-kappa-B essential mo 56.5 47 0.0016 23.0 10.6 70 59-128 8-80 (94)
175 1joc_A EEA1, early endosomal a 56.4 49 0.0017 23.3 9.1 24 103-126 12-35 (125)
176 3w03_C DNA repair protein XRCC 56.0 26 0.00088 27.0 5.9 23 103-125 160-182 (184)
177 3vkg_A Dynein heavy chain, cyt 55.8 73 0.0025 34.1 10.7 16 72-87 2033-2048(3245)
178 1am9_A Srebp-1A, protein (ster 55.8 40 0.0014 22.0 6.1 27 73-99 49-75 (82)
179 1jcd_A Major outer membrane li 55.5 34 0.0012 21.1 7.7 45 81-125 4-48 (52)
180 2r2v_A GCN4 leucine zipper; co 54.4 28 0.00097 19.9 4.6 29 98-126 4-32 (34)
181 2w83_C C-JUN-amino-terminal ki 53.8 47 0.0016 22.2 9.8 39 91-129 33-71 (77)
182 3he5_A Synzip1; heterodimeric 53.5 34 0.0012 20.5 7.4 17 83-99 5-21 (49)
183 3bbp_D GRIP and coiled-coil do 53.0 18 0.00061 23.9 3.9 16 106-121 47-62 (71)
184 1zme_C Proline utilization tra 52.4 15 0.00052 22.5 3.4 24 74-97 44-67 (70)
185 4ath_A MITF, microphthalmia-as 52.0 43 0.0015 22.6 5.8 30 74-103 49-78 (83)
186 2oto_A M protein; helical coil 51.3 66 0.0022 23.2 9.3 33 94-126 49-81 (155)
187 4emc_A Monopolin complex subun 51.2 83 0.0028 24.3 10.0 35 76-110 22-56 (190)
188 1uix_A RHO-associated kinase; 51.2 49 0.0017 21.7 7.8 32 79-110 2-33 (71)
189 3bas_A Myosin heavy chain, str 50.6 52 0.0018 21.8 10.3 56 75-130 29-84 (89)
190 2ve7_C Kinetochore protein NUF 50.3 12 0.00041 29.7 3.3 36 92-127 145-180 (250)
191 4gkw_A Spindle assembly abnorm 50.3 76 0.0026 23.6 7.6 51 73-123 111-161 (167)
192 3qh9_A Liprin-beta-2; coiled-c 49.1 58 0.002 22.0 8.9 11 78-88 23-33 (81)
193 3na7_A HP0958; flagellar bioge 47.3 96 0.0033 24.0 13.5 51 75-125 91-141 (256)
194 1hlo_A Protein (transcription 47.2 15 0.0005 23.9 2.8 14 73-86 28-41 (80)
195 1gk4_A Vimentin; intermediate 46.1 60 0.0021 21.3 10.6 54 72-125 24-77 (84)
196 1zxa_A CGMP-dependent protein 46.0 52 0.0018 21.3 5.3 29 72-100 23-51 (67)
197 1uii_A Geminin; human, DNA rep 45.4 68 0.0023 21.7 6.6 19 100-118 51-69 (83)
198 1lwu_C Fibrinogen gamma chain; 45.2 68 0.0023 26.5 7.2 8 115-122 46-53 (323)
199 1x79_B RAB GTPase binding effe 44.7 81 0.0028 22.3 9.7 27 110-136 39-65 (112)
200 2v4h_A NF-kappa-B essential mo 44.5 82 0.0028 22.3 7.8 45 74-118 62-106 (110)
201 2zvf_A Alanyl-tRNA synthetase; 44.3 24 0.00084 25.3 3.9 26 101-126 31-56 (171)
202 2dq0_A Seryl-tRNA synthetase; 43.9 1.1E+02 0.0038 26.0 8.6 60 69-128 40-102 (455)
203 3swk_A Vimentin; cytoskeleton, 43.6 38 0.0013 22.6 4.5 28 76-103 2-29 (86)
204 1hlo_A Protein (transcription 42.7 65 0.0022 20.7 5.5 23 101-123 56-78 (80)
205 2wt7_B Transcription factor MA 42.5 79 0.0027 21.5 10.4 33 102-134 48-80 (90)
206 2p22_A Suppressor protein STP2 42.3 1.1E+02 0.0037 23.2 7.4 62 67-128 27-89 (174)
207 1fmh_B General control protein 42.1 44 0.0015 18.5 5.0 24 101-124 7-30 (33)
208 3qne_A Seryl-tRNA synthetase, 42.0 1.4E+02 0.0049 25.9 9.0 27 106-132 75-101 (485)
209 3ghg_A Fibrinogen alpha chain; 41.7 1.1E+02 0.0036 27.4 8.2 41 92-132 114-154 (562)
210 3a2a_A Voltage-gated hydrogen 40.5 68 0.0023 20.3 6.7 34 92-125 15-48 (58)
211 4b4t_K 26S protease regulatory 40.5 56 0.0019 27.7 6.1 21 79-99 54-74 (428)
212 3pdy_A Plectin; cytoskeleton, 39.4 1.1E+02 0.0038 22.4 8.2 42 94-135 158-203 (210)
213 3tnu_A Keratin, type I cytoske 39.2 98 0.0033 21.7 10.1 39 83-121 86-124 (131)
214 3q0x_A Centriole protein; cent 38.9 1.4E+02 0.0048 23.5 8.6 39 92-130 175-213 (228)
215 2w6a_A ARF GTPase-activating p 38.6 77 0.0026 20.3 7.4 36 93-128 18-53 (63)
216 2er8_A Regulatory protein Leu3 38.3 19 0.00065 22.2 2.2 21 73-93 48-68 (72)
217 3iox_A AGI/II, PA; alpha helix 38.3 1.9E+02 0.0064 25.5 9.1 21 80-100 40-60 (497)
218 2ve7_A Kinetochore protein HEC 37.5 1E+02 0.0035 24.9 7.0 32 80-111 184-215 (315)
219 2ve7_A Kinetochore protein HEC 37.3 63 0.0021 26.2 5.7 23 103-125 186-208 (315)
220 3qne_A Seryl-tRNA synthetase, 37.1 2.1E+02 0.0071 24.8 11.0 24 102-125 78-101 (485)
221 2i1j_A Moesin; FERM, coiled-co 36.9 35 0.0012 30.0 4.4 60 75-134 336-395 (575)
222 3lay_A Zinc resistance-associa 36.5 1.3E+02 0.0046 22.5 7.1 23 102-124 113-135 (175)
223 4ati_A MITF, microphthalmia-as 36.2 16 0.00055 25.8 1.8 18 105-122 94-111 (118)
224 2efr_A General control protein 35.8 1.3E+02 0.0045 22.2 10.3 60 60-119 56-115 (155)
225 3he5_B Synzip2; heterodimeric 35.5 74 0.0025 19.2 6.9 38 79-116 8-45 (52)
226 3he4_A Synzip6; heterodimeric 34.8 79 0.0027 19.4 6.0 28 103-130 25-52 (56)
227 3oa7_A Head morphogenesis prot 34.8 1.6E+02 0.0056 23.0 7.9 38 85-122 34-71 (206)
228 3qh9_A Liprin-beta-2; coiled-c 34.7 1E+02 0.0036 20.7 9.0 26 74-99 26-51 (81)
229 3q8t_A Beclin-1; autophagy, AT 34.4 1.1E+02 0.0036 20.7 12.4 39 83-121 27-65 (96)
230 2j5u_A MREC protein; bacterial 34.3 13 0.00045 29.4 1.1 14 104-117 28-41 (255)
231 3swk_A Vimentin; cytoskeleton, 33.4 1E+02 0.0036 20.3 8.7 15 121-135 68-82 (86)
232 3gpv_A Transcriptional regulat 32.5 1.3E+02 0.0045 21.2 6.6 31 99-129 99-129 (148)
233 3ghg_A Fibrinogen alpha chain; 32.5 2.4E+02 0.0083 25.1 8.9 45 89-133 103-148 (562)
234 3q4f_C DNA repair protein XRCC 32.5 47 0.0016 25.7 3.9 23 74-96 161-183 (186)
235 3thf_A Protein shroom; coiled- 32.3 1.7E+02 0.0059 22.5 11.2 64 69-132 14-79 (190)
236 3trt_A Vimentin; cytoskeleton, 32.0 96 0.0033 19.5 10.0 19 108-126 55-73 (77)
237 3iox_A AGI/II, PA; alpha helix 31.9 2.6E+02 0.009 24.5 9.5 29 78-106 31-59 (497)
238 1ik9_A DNA repair protein XRCC 31.8 1.8E+02 0.006 22.4 9.1 31 72-102 137-167 (213)
239 1x8y_A Lamin A/C; structural p 30.5 1.2E+02 0.004 20.0 8.6 30 98-127 31-60 (86)
240 1d7m_A Cortexillin I; coiled-c 29.9 1.4E+02 0.0048 20.7 10.5 40 66-105 17-56 (101)
241 1zxa_A CGMP-dependent protein 29.7 1E+02 0.0035 19.9 4.7 32 102-133 25-56 (67)
242 4b4t_M 26S protease regulatory 29.2 68 0.0023 27.2 4.8 19 107-125 51-69 (434)
243 1deq_A Fibrinogen (alpha chain 29.1 2.7E+02 0.0092 23.7 9.0 43 91-133 116-158 (390)
244 1ses_A Seryl-tRNA synthetase; 28.8 2E+02 0.0069 24.0 7.7 60 69-128 37-97 (421)
245 2oa5_A Hypothetical protein BQ 28.7 36 0.0012 24.3 2.5 19 100-118 13-31 (110)
246 2fic_A Bridging integrator 1; 28.5 1.9E+02 0.0063 21.7 10.0 13 109-121 197-209 (251)
247 1lrz_A FEMA, factor essential 28.3 2.2E+02 0.0075 23.3 7.7 21 112-132 284-304 (426)
248 2zvf_A Alanyl-tRNA synthetase; 28.2 1.6E+02 0.0054 20.8 6.7 26 78-103 29-54 (171)
249 1wle_A Seryl-tRNA synthetase; 28.2 2.9E+02 0.01 23.8 12.9 60 75-134 71-141 (501)
250 4dzo_A Mitotic spindle assembl 28.1 1.5E+02 0.0051 20.9 5.8 23 75-97 5-27 (123)
251 2aze_B Transcription factor E2 27.9 1.4E+02 0.0046 20.6 5.4 12 79-90 11-22 (106)
252 2l5g_B Putative uncharacterize 27.3 1E+02 0.0035 18.3 5.7 32 100-131 7-38 (42)
253 2eqb_B RAB guanine nucleotide 26.9 1.6E+02 0.0054 20.3 9.8 19 109-127 76-94 (97)
254 2ic6_A Nucleocapsid protein; h 26.6 1.4E+02 0.0049 19.8 6.7 19 115-133 51-69 (78)
255 3mov_A Lamin-B1; LMNB1, B-type 25.8 1.6E+02 0.0053 19.9 10.3 52 74-125 37-88 (95)
256 3lss_A Seryl-tRNA synthetase; 25.6 3.3E+02 0.011 23.5 9.5 22 111-132 113-134 (484)
257 2ocy_A RAB guanine nucleotide 24.0 2.2E+02 0.0076 21.1 9.7 17 118-134 117-133 (154)
258 3oa7_A Head morphogenesis prot 24.0 2.5E+02 0.0085 21.9 6.7 38 91-128 33-70 (206)
259 4gkw_A Spindle assembly abnorm 23.8 2.2E+02 0.0077 21.0 10.2 23 104-126 48-70 (167)
260 3tq2_A KE1; parallel three hel 23.3 1.1E+02 0.0037 17.2 5.3 29 93-121 6-34 (36)
261 3m0a_A TNF receptor-associated 23.2 1.4E+02 0.0046 18.3 9.4 54 78-131 9-62 (66)
262 2dq3_A Seryl-tRNA synthetase; 22.6 2.4E+02 0.0084 23.5 7.1 23 108-130 74-96 (425)
263 4ath_A MITF, microphthalmia-as 22.5 1.8E+02 0.0062 19.5 7.6 41 73-124 38-78 (83)
264 3cve_A Homer protein homolog 1 22.3 1.7E+02 0.0058 19.1 10.6 46 74-119 21-66 (72)
265 3vmx_A Voltage-gated hydrogen 22.3 1.4E+02 0.0048 18.1 7.1 31 93-123 9-39 (48)
266 1s1c_X RHO-associated, coiled- 21.7 1.7E+02 0.006 19.0 9.5 31 78-108 3-33 (71)
267 3mud_A DNA repair protein XRCC 21.6 2.6E+02 0.0089 21.2 6.4 37 74-110 135-171 (175)
268 3lss_A Seryl-tRNA synthetase; 21.2 4E+02 0.014 23.0 9.2 19 107-125 116-134 (484)
269 2yko_A LINE-1 ORF1P; RNA-bindi 21.1 2.9E+02 0.01 21.8 6.8 18 76-93 8-25 (233)
270 4b4t_J 26S protease regulatory 21.1 1.3E+02 0.0045 25.3 5.1 21 74-94 25-45 (405)
271 1m1j_B Fibrinogen beta chain; 21.1 4E+02 0.014 23.0 10.0 21 112-132 171-191 (464)
272 2ic9_A Nucleocapsid protein; h 20.6 2.2E+02 0.0074 19.7 5.6 18 116-133 52-69 (96)
273 3mtu_A Tropomyosin alpha-1 cha 20.5 1.8E+02 0.0062 18.7 5.4 37 75-111 17-53 (75)
274 1hwt_C Protein (heme activator 20.4 39 0.0013 21.1 1.3 18 118-135 60-77 (81)
275 3q4f_C DNA repair protein XRCC 20.2 2.2E+02 0.0075 21.9 5.7 30 74-103 154-183 (186)
276 4b4t_M 26S protease regulatory 20.2 1.2E+02 0.0043 25.6 4.8 8 86-93 44-51 (434)
277 2w6b_A RHO guanine nucleotide 20.1 1.7E+02 0.0059 18.3 7.5 17 79-95 15-31 (56)
278 1ez3_A Syntaxin-1A; three heli 20.1 2E+02 0.007 19.1 6.3 17 114-130 93-109 (127)
279 3jsv_C NF-kappa-B essential mo 20.0 2.2E+02 0.0076 19.5 5.7 15 74-88 40-54 (94)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.59 E-value=1.7e-15 Score=97.96 Aligned_cols=52 Identities=29% Similarity=0.452 Sum_probs=47.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 53 RKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 53 Rr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~ 104 (140)
|+.+|+++||+||++||.||++|+++|+.+|..|..+|..|..++..|...+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999888876543
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.43 E-value=6.9e-13 Score=87.42 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~ 104 (140)
||+.+|+++||+||++||.||++++++|+.+|..|..+|..|..++..|..++
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999988888775554443
No 3
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.39 E-value=7.3e-13 Score=87.67 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 48 YSDDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 48 ~~~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~ 104 (140)
+.++++..++..+||+||++||.||++|+.+|+.+|..|..+|..|..++..|.+.+
T Consensus 4 ~~~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 4 PESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666667799999999999999999999999999999998888887776554
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.33 E-value=7.1e-12 Score=81.83 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=45.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 53 RKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 53 Rr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
||.+|+++||+||++||.||+.++++|+.+|..|..+|..|..++..|..+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998888877655433
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.27 E-value=1.3e-11 Score=80.86 Aligned_cols=51 Identities=27% Similarity=0.412 Sum_probs=44.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 53 RKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 53 Rr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
|+.+|+.+||+||++||.||+.++++|+.+|..|..+|..|..++..|..+
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999888877665443
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.06 E-value=6.6e-10 Score=74.99 Aligned_cols=61 Identities=21% Similarity=0.168 Sum_probs=50.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 54 KKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 54 r~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
..+|+..||.|+|..|.||.+|+.+|+.+|..|...|..|..++..|..++..|..||..|
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3688999999999999999999999999999999998887766666666666666666554
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.01 E-value=1.1e-09 Score=72.19 Aligned_cols=59 Identities=29% Similarity=0.341 Sum_probs=43.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 53 RKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 53 Rr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
|+.+++..||.||+|+|.||+.+.++|+.++..|..+|..|..++..| ..|+..|+.-+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L-------~~E~~~Lk~ll 60 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSL-------AKEIQYLKDLI 60 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 577889999999999999999999999999999999998888876554 44455555433
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.82 E-value=2.7e-08 Score=68.26 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=47.5
Q ss_pred cCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 46 AVYSDDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 46 ~~~~~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
.++..|+....|..+|.++|++||.+++....+++.++..|..+|..|..++..|..
T Consensus 8 ~~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888999999999999999999999999999999888888877765433
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.81 E-value=3.5e-08 Score=69.00 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=46.7
Q ss_pred cCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 46 AVYSDDERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 46 ~~~~~eeRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
.++..|++...|+.+|.++|++||.+++....+++.++..|..+|..|..++..|
T Consensus 8 ~~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp --CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888999999999999999999999999999999988888888776543
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.60 E-value=9.2e-10 Score=79.76 Aligned_cols=67 Identities=27% Similarity=0.328 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
.|..||.+|||.+|+.||.||.+.+++|+.++..|..+...| ..||..|+.++..|..++..|.++
T Consensus 36 lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L--------------~~En~~l~~E~~~lk~k~e~L~~~ 101 (107)
T 3a5t_A 36 LKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL--------------ASENASMKLELDALRSKYEALQNF 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT--------------TSTTSHHHHTTTSSSSCC------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999998877766655443 445556666666666666555544
Q ss_pred H
Q 039918 132 L 132 (140)
Q Consensus 132 l 132 (140)
.
T Consensus 102 a 102 (107)
T 3a5t_A 102 A 102 (107)
T ss_dssp -
T ss_pred H
Confidence 3
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.30 E-value=6.7e-06 Score=57.79 Aligned_cols=62 Identities=26% Similarity=0.356 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
-|-.||.++||.+|+-||.||.....+|+.++..|..+-..|+. ||..+..++..+..++..
T Consensus 26 lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~--------------e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 26 LKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQ--------------EVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999888887766555554 444455555555555543
No 12
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=97.08 E-value=0.0084 Score=41.20 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.+.-|+-+++.|+.+|..|..++..+......+..||..|+.+...+..+|..|..
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888888888888888888999999999999999999977643
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.77 E-value=0.00068 Score=47.59 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 039918 50 DDERKKRRMISNRESARRSRWRKKKQLEDLTE 81 (140)
Q Consensus 50 ~eeRr~RR~~sNReSArrSR~RKk~~leeLe~ 81 (140)
...|..||..+||.+|++||+||....+.|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 44688999999999999999999998887653
No 14
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.71 E-value=0.0059 Score=37.12 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
|+|+.+||.++..|...|..|..++ ..|..||.-||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEerv-------stLq~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERL-------STLQNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHh
Confidence 5899999999999998887777655 45678888888654
No 15
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.00 E-value=0.038 Score=34.91 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
.+.|-.+|+.|+.||..|++++..=..++..|+.|-.-+++-+..|..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 578889999999999999999999999999888888887776666543
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.81 E-value=0.11 Score=38.44 Aligned_cols=59 Identities=24% Similarity=0.168 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.+...+.|+.++..+..+...|+.++..+..++..+..++..|+.++..|..++..+..
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888887777654
No 17
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=95.36 E-value=0.058 Score=37.30 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 039918 95 NELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQT 137 (140)
Q Consensus 95 ~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~~ 137 (140)
.....+......|+.||..|+.++..|...+..|..+|..+..
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 3445667788899999999999999999999999999876544
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.32 E-value=0.22 Score=34.06 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
.-++.|+.+|..+-....-|.-++..|.++...+..+|..++.....|......+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL 60 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3578899999998888888888888888888888888888555444444444433
No 19
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=95.08 E-value=0.11 Score=33.54 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 93 LKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 93 L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
=+.+...+..++..|..+|..|+.++..|+..+..|.++|.-
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355677888899999999999999999999999999998853
No 20
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=95.00 E-value=0.1 Score=33.10 Aligned_cols=40 Identities=28% Similarity=0.191 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 94 KNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 94 ~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
+..+..|...+..+..+|..|+.++..|+..+..|.++|.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456778888899999999999999999999999988874
No 21
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.86 E-value=0.17 Score=32.93 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
+..-+++|.+|..-|..|..++..++..++.|..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 44567889999999999999999999999999999999973
No 22
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=94.65 E-value=0.26 Score=35.00 Aligned_cols=47 Identities=28% Similarity=0.191 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKN-------ELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~-------~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
.-+|+..++.++.+|..|+. ++..|...+..|..||..|+.+-...+
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34577777777777777666 566666666666677777766655544
No 23
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=94.59 E-value=0.17 Score=32.42 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 94 KNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 94 ~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
+..+..|......|..+|..|+.++..|+..+..|..+|.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999999999999999999999999998875
No 24
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=93.97 E-value=0.11 Score=35.24 Aligned_cols=39 Identities=23% Similarity=0.168 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 95 NELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 95 ~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
.....+...+..|..||..|+.++..|...+..|..+|.
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778889999999999999999999999988763
No 25
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=93.95 E-value=0.33 Score=29.56 Aligned_cols=44 Identities=23% Similarity=0.145 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
.+..|+.+|+.|+.+|..|+.++-.-..-+..++.|-.-||..+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999877555555555555555555443
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.97 Score=34.17 Aligned_cols=94 Identities=23% Similarity=0.220 Sum_probs=36.0
Q ss_pred hhhhhhhhhhccCCCCCCCCCCCcCCC-hHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 23 DDIQEWLSDLFQSNSGSSEGSTRAVYS-DDE-RKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 23 ~~~~~~~s~~~~sps~~~~g~~~~~~~-~ee-Rr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
+.+..-|+.+|..|||. .|+| .|+. ..+ .....+.+-+.+.+..-......+.+-..-+..+..|...|..++..+
T Consensus 38 d~~E~~~~~l~~e~~~~-~~~~-~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 38 NDKEAHLNELFQDNSGA-IGGN-IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL 115 (152)
T ss_dssp --------------------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhccC-CCcc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566677644 2222 1211 112 222223333333222222333334444455666666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039918 101 LNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 101 ~~~~~~l~~EN~~Lr~e~ 118 (140)
..+...+..||..|-.+.
T Consensus 116 E~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 116 QQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776664443
No 27
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=93.21 E-value=0.13 Score=32.80 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 94 KNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 94 ~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
+..+..|...+..|..+|..|+.++..|+..+..|.++|.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888889999999999999999999988877664
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.09 E-value=1.6 Score=32.04 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
...++++..++..|..+...+..++..+......+..++..|..++..|.+.+.+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666677777777777777777777777777777777777777766654
No 29
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=92.68 E-value=0.21 Score=28.89 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
+|..||.+|..|-.+|..|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 466777777777777766666665554
No 30
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=92.62 E-value=1.7 Score=30.62 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYL---------------------LWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~---------------------l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
.+..|..+++.|+.||..|+.++..|.-++.. ...-....+..+..|+..+..|+..+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788888888888888888777644333 011112345566666666666666665
Q ss_pred hccC
Q 039918 134 SMQT 137 (140)
Q Consensus 134 ~~~~ 137 (140)
.|+-
T Consensus 93 ~lEe 96 (100)
T 1go4_E 93 AMER 96 (100)
T ss_dssp TCC-
T ss_pred HHhc
Confidence 5554
No 31
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=92.59 E-value=0.94 Score=29.04 Aligned_cols=40 Identities=30% Similarity=0.310 Sum_probs=28.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 56 RRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKN 95 (140)
Q Consensus 56 RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~ 95 (140)
+..-+||.++|+||.|=+..++....-.+.-..||..|+-
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~ 43 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRL 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 3456899999999999888877666555555556655543
No 32
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=92.59 E-value=0.54 Score=29.20 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 80 TEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 80 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
+.++..|..-|..|..++..|...|..++.|+.+|+.=+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 567889999999999999999999999999988887543
No 33
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=92.39 E-value=0.18 Score=29.05 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
|..||.+|+.|-.+|..|..++..|+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677777777777766666665554
No 34
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=91.78 E-value=0.011 Score=41.43 Aligned_cols=24 Identities=33% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 039918 51 DERKKRRMISNRESARRSRWRKKK 74 (140)
Q Consensus 51 eeRr~RR~~sNReSArrSR~RKk~ 74 (140)
-.|..||.-+||.+|+.+|+||..
T Consensus 64 lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 64 LVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 358899999999999999999853
No 35
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.71 E-value=1.8 Score=30.36 Aligned_cols=52 Identities=19% Similarity=0.184 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
..+..|+.++.....+...|...+..-......++.++..+..++..|.+-|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777777777777788888888888888887666
No 36
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=91.32 E-value=0.53 Score=27.51 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
+|..|+.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5677888888877777777777666544
No 37
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=91.17 E-value=2.4 Score=28.62 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 70 WRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 70 ~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
+|=++.+..-..++..|+.-...|..--..|..-...+..|-..|...+..|..+...|.+++
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344577888888899998888888888888888899999999999999999999999887764
No 38
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=90.60 E-value=0.49 Score=27.34 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
+|..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 466777777777776666666665554
No 39
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=90.55 E-value=0.99 Score=28.86 Aligned_cols=39 Identities=21% Similarity=0.122 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 80 TEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 80 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
+.++..|..-|-.|..+++.|..+|...+.|+.+|..=+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888899999999999889888888888876543
No 40
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=89.81 E-value=0.63 Score=26.72 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
|..||.+|+.|-.+|..|..++..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55667777776666666666655543
No 41
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=89.32 E-value=0.62 Score=29.98 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 94 KNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 94 ~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
...+..|..+...|..+|..|+.++..|+..|.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677788888889999999999999987764
No 42
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=89.15 E-value=2.4 Score=28.68 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
.+++..++..+..+|..|..++..+...+..-..+-..++.++..+...
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888887777777777777776655443
No 43
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=89.02 E-value=3.9 Score=27.68 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
+-+|..++..|+.|...|+..++.+..++..+......+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666655555555554444333
No 44
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=88.98 E-value=2.7 Score=26.12 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
+.+|..++..|...|..|..-+...
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~A 35 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEA 35 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555544443
No 45
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=88.95 E-value=0.97 Score=29.84 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 93 LKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 93 L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
|..++..+......+..||..|+.++..|...+..
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556677888888888777777654
No 46
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=88.75 E-value=0.66 Score=26.81 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
+|..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 456677777777777766666665554
No 47
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=88.68 E-value=0.73 Score=25.61 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 103 QCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
-+..++.||.+|++.+++|-+++
T Consensus 7 llasleaenkqlkakveellakv 29 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888888888776655
No 48
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=88.66 E-value=0.78 Score=26.79 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
+|..|+.+|..|-.+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567777777777777777776665543
No 49
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.58 E-value=5.2 Score=28.59 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
+..|+.++..|+..|..|...+..|......|+......-.-+..+..+|..+-+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiE 91 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIE 91 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666666666666666666655433
No 50
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.51 E-value=5.3 Score=30.08 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 90 NQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 90 N~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
++.|..++..|.-++..++.....|.++-..|
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333343333333
No 51
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.15 E-value=8.7 Score=36.49 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 104 CYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 104 ~~~l~~EN~~Lr~e~~~L~ 122 (140)
...|..||..|++++..|.
T Consensus 1025 v~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1025 VSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554444
No 52
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=87.94 E-value=0.8 Score=26.46 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
+|..||.+|+.|-.+|..|..++..|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356677777777777766666665554
No 53
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=87.79 E-value=1.2 Score=30.19 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 87 AVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 87 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
-.||..|..++..+...+..+..||..|+.-+...+.
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~ 69 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQY 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999888654444433
No 54
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=87.70 E-value=1.1 Score=25.75 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
|..||.+|+.|-.+|..|..++..++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56778888887777777777766654
No 55
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=87.67 E-value=1.4 Score=27.45 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 039918 82 ELNRSAVENQVLKNE 96 (140)
Q Consensus 82 ~v~~L~~eN~~L~~~ 96 (140)
.|+.|+.||..|+.+
T Consensus 20 d~eaLk~E~~eLk~k 34 (53)
T 2yy0_A 20 EIELLRLELAEMKEK 34 (53)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444444433
No 56
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=87.66 E-value=0.8 Score=24.92 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 106 LLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 106 ~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.|+-||..|.+.+..|.++++.+.
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 567778888888877777776654
No 57
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=87.61 E-value=4.6 Score=26.83 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
.++..++..+..+|..|..++..+...+..-..+-..++.++..+...
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888877777777777777665443
No 58
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=87.46 E-value=0.89 Score=26.24 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
+|..|+.+|+.|-.+|..|..++..|..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567777777777777777776665543
No 59
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=87.37 E-value=0.83 Score=37.08 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLT 115 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr 115 (140)
..+.+|+.++..|...|..|...+..++.++..|..|+..|+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446677777777777777777777776666666666655554
No 60
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=87.10 E-value=1.3 Score=25.94 Aligned_cols=30 Identities=33% Similarity=0.317 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 87 AVENQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 87 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
-.||.+|...+..-.+++..|..||..|.+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 358999999999999999999999988863
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.01 E-value=8.1 Score=32.85 Aligned_cols=39 Identities=23% Similarity=0.119 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
.++.+.+.+..+++.+..+++...+.+..+..|...|+.
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 333344444444444444444444444444444444433
No 62
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.48 E-value=6 Score=27.98 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
-..+.+|+.+|..|+.||+.|..+......
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467889999999999999999998776543
No 63
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=86.32 E-value=4.1 Score=31.74 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
++++.-..-|..|..||..|..++.....+...|..+-+.|+.++......+
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 4455555667777777777777776666566555555555555554444444
No 64
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=86.21 E-value=1.5 Score=25.25 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 97 LNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 97 ~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
...|..++..|..+|..|..++..|+.-|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34566677788888888888888887765
No 65
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.78 E-value=1 Score=25.82 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
..|..++..|..+|..|..++..|+.-|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3566677888899999999998887755
No 66
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=84.97 E-value=8.3 Score=27.29 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=8.9
Q ss_pred CChHHHHHHHHHHh
Q 039918 48 YSDDERKKRRMISN 61 (140)
Q Consensus 48 ~~~eeRr~RR~~sN 61 (140)
...++|-++-|++|
T Consensus 5 ~EvEEKyrKAMVsn 18 (103)
T 4h22_A 5 AEVEEKYKKAMVSN 18 (103)
T ss_dssp ---CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35567778888887
No 67
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.87 E-value=2.2 Score=26.53 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 90 NQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 90 N~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
...|+.++..|+.++..|..++..|++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333333
No 68
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=84.81 E-value=11 Score=29.61 Aligned_cols=45 Identities=24% Similarity=0.186 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 87 AVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 87 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
-.||..|..++..+.+.+..+..||..|+.=+..++....-+.++
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999988877665555444444444
No 69
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=84.80 E-value=3.8 Score=27.32 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.++.+||.+++.+..-...|...+..-.. +-..|+.++..|..++..+.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~-------~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARL-------TGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Confidence 35666666666666655555555544444 44455555555555554443
No 70
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.76 E-value=19 Score=34.27 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLL----WKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l----~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
+..|+.+++.|+.+...+..+...+.+.+..+ ...-..|..+...|++.+.++...+.
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333222 23333455566666666666664443
No 71
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.75 E-value=11 Score=28.67 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
.++...+..+...+..|...+..|......|..+...|.+.+.
T Consensus 37 tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 37 TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555544443
No 72
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=84.72 E-value=5.2 Score=24.80 Aligned_cols=36 Identities=6% Similarity=0.013 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
.++..|+.++..|..++..|..-+.....+-..|++
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333333333333
No 73
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=84.60 E-value=4.8 Score=24.21 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 101 LNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 101 ~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
..+...++.-|+.|.+.+..|...=.-|++||
T Consensus 9 E~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 33334444444444444444444444444443
No 74
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=84.48 E-value=1.2 Score=27.83 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 95 NELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 95 ~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
..+..|..++..|..||..|+.++..|...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677778888999999999998887654
No 75
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.30 E-value=7.8 Score=26.44 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
..|+.++..+..+|..|..++..|...+.++
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555554444443
No 76
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.21 E-value=0.77 Score=31.02 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 89 ENQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 89 eN~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
|...|+.++..|.++...|+.||..||.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666777777777765
No 77
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.50 E-value=9.2 Score=27.73 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 90 NQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 90 N~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
.+.|..+|..|.+++.....|-.+||.+...|..++.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 4445555555555555555555555555555555543
No 78
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=83.13 E-value=8.1 Score=25.76 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIV------LNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l------~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
-+..++.|+.++..|..+...|..++..- -..+..+..+-..+..++..+-.++..|..+
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578999999999999999999888642 2567778888888999999998888877654
No 79
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=83.13 E-value=7.4 Score=27.32 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNI---------------------VLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~---------------------l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
..++.|+.+...|+.++..|..++.. ....+.....+-..|++++..|+.++..|.
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666777777777777776666655 124445566777778888888887776553
No 80
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=83.05 E-value=8.4 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.004 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKEN 111 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN 111 (140)
.+-..|.-+...|+..+..+.+.+..+..|+
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~ 53 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQY 53 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444433333333333
No 81
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=82.80 E-value=7.9 Score=28.08 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 82 ELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 82 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
+|..|+.|+..|..++.........|..+|..|...+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 4666666666666666666666667777777666555
No 82
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=82.61 E-value=4.8 Score=26.78 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 105 YLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 105 ~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
..|...-..-..++..|+.+|..|.+=+..++
T Consensus 31 eeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 31 TELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333334455566666666666655544443
No 83
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=82.53 E-value=1.5 Score=35.60 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 101 LNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 101 ~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
..+...+...|..|.+.+..++.++..+.+-|..++
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444444444444444444444333333
No 84
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=82.52 E-value=2 Score=28.31 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 039918 113 QLTSEYVALRTR 124 (140)
Q Consensus 113 ~Lr~e~~~L~~~ 124 (140)
.|..++..|+.+
T Consensus 58 ~l~~e~~~L~~~ 69 (83)
T 1nkp_B 58 THQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 85
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=82.16 E-value=15 Score=28.03 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=38.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 57 RMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 57 R~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
.+..-=+.=|+.|.+-.+.+.+|+.++..|..+...++. ....+..+|..|...+..|...-+.+
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~-------~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH-------NLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444555667777777777777777666665555544 34445556666665555555544444
No 86
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=82.12 E-value=3 Score=23.87 Aligned_cols=28 Identities=4% Similarity=0.016 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
..|..++..|..+|..|..++..|+.-|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566677788888999998888887765
No 87
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=82.05 E-value=11 Score=26.72 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
+.+.+..+..|......|-..+..+..++......|..|.+....|...+.++..=|.-.
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666667777777777777777666666666666665554443
No 88
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=81.63 E-value=1.4 Score=23.93 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039918 107 LWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 107 l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
|...|.+|++++..|.-.++.+
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 4455666666666665555444
No 89
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=81.54 E-value=3.2 Score=23.88 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 97 LNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 97 ~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
.+.|..++..|..+|..|..++..|+.-|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34566677788888889988888887765
No 90
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=81.34 E-value=3.6 Score=23.08 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
..|+.+|++.+.+|-.|..++..|...
T Consensus 4 aqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 456666666666666666555555443
No 91
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=81.20 E-value=7.8 Score=24.25 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
.++...+..|+.+...++..+......+..|..=.-.|..++...+.-|.
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45667777777777778888777777888888888888888888876653
No 92
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=81.16 E-value=2.7 Score=23.29 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
+.|..-++.|+.||.+|+.++..+...
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999988776543
No 93
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=81.05 E-value=17 Score=34.54 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 102 NQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 102 ~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
..+..+..+...|..++..+..++..+
T Consensus 913 ~~l~~l~~~~~~Le~~l~ele~elee~ 939 (1184)
T 1i84_S 913 EMRVRLAAKKQELEEILHEMEARIEEE 939 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 94
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=81.01 E-value=4 Score=27.15 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
.|+..|+.+...+..++..|..++..|..+
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555555555444433
No 95
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=80.93 E-value=3.2 Score=23.91 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
+|..|+.+|+.|-.+|..|.+++..|..
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4667777777777777777766665543
No 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.21 E-value=17 Score=30.79 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
+.++..+..+....+.+..++....+.......+-..|+.++..+..++....+.+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 33444444444444444444444444444444444445555555555554444433
No 97
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.91 E-value=19 Score=27.84 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
+..|+.++..|+..+..|+..+..|......++........-+..+..+|..+..=++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~a 147 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNA 147 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555555554433333
No 98
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=79.01 E-value=2 Score=26.87 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
..++.+...+..|..+|..|+.++..+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444433
No 99
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=78.70 E-value=13 Score=25.45 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
.+.+.++.++..+...+..+-.++..|..++..++.+-..+...+......|..
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666665555555555555444443
No 100
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=78.38 E-value=7.3 Score=24.40 Aligned_cols=40 Identities=30% Similarity=0.319 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhccC
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRL-------SNLYRILGSMQT 137 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l-------~~l~~il~~~~~ 137 (140)
..|.++...|..||.-||.++..=..+| .+|..++..+|+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 4556667777888888887766554444 455666666654
No 101
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.44 E-value=17 Score=25.89 Aligned_cols=50 Identities=10% Similarity=-0.016 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 80 TEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 80 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
-..+..|+.+...|+.....+...+..|+..|..|.........-|.++.
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 34556666666666666666666666666666666555555555555553
No 102
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=77.37 E-value=6 Score=22.99 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
..|..+...|..+|..|..++..|+..|..
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 445556666777778888888887777654
No 103
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=77.14 E-value=14 Score=24.99 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 61 NRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 61 NReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
|=.||=.+=-+-|+- +..++...+..|..+.+++.... ..|..|..++..|+.++..
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~eae-------~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLREAE-------ARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 444444443333332 33445556666666666555544 4455555555555555444
No 104
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=76.97 E-value=1.1 Score=35.58 Aligned_cols=32 Identities=34% Similarity=0.341 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 039918 86 SAVENQVLKNELNIVLN---QCYLLWKENEQLTSE 117 (140)
Q Consensus 86 L~~eN~~L~~~~~~l~~---~~~~l~~EN~~Lr~e 117 (140)
|..||+.|+.++..|.. ++..+..||.+|++-
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKES 58 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665555442 334555566666553
No 105
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=76.66 E-value=18 Score=28.17 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
...|+.++..|..+|..|...+..+..++..+..+-..+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~ 172 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEAL 172 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666555444
No 106
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=76.56 E-value=5 Score=23.09 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 95 NELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 95 ~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
.++...+.....+..+|..|.+++..|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 334444444455556666666665443
No 107
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=76.53 E-value=11 Score=24.72 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 103 QCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
....+..+...|+.+...|..+|.
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443
No 108
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=76.38 E-value=1.6 Score=31.42 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~ 99 (140)
.-+++|..++..|+-||..|+.++..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999874
No 109
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.36 E-value=6.2 Score=28.06 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
.+..|+.++..+...|..|...+..+..
T Consensus 44 ~iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455555555555555555555554443
No 110
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.10 E-value=14 Score=24.25 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
..++.++.++......+..+-.++..|..++..++.+-......+.....+|..
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555544443
No 111
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=76.05 E-value=13 Score=31.37 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELN 98 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~ 98 (140)
.|+.++..|+.+...|...+.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~ 27 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIK 27 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333
No 112
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.38 E-value=12 Score=31.76 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 86 SAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 86 L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
|..|...|+.++..+.+....+..++..+++++.........++.-++-
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444555555555554444444444444433
No 113
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.12 E-value=17 Score=38.64 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 82 ELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 82 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
+++..+.+-..+..++..|+.++..+..|...|+.++.....+|.....+|..+
T Consensus 2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444455556666666777777777788888888888888888877777543
No 114
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=74.84 E-value=17 Score=24.72 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
.+.+.++.++..+...+..+-.++..|..++..+..+-..+...+......|
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666555555555555444444
No 115
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=74.77 E-value=17 Score=24.78 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
+.+..|+.+-..+..+...+..+...+...-.....+-+.++.++..+...+..+
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333333344444444444444443333
No 116
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=74.65 E-value=4.6 Score=23.22 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
..|..+...|..+|..|..++..|+.-|
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566677778888888888888887654
No 117
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=74.58 E-value=12 Score=25.15 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 039918 107 LWKENEQLTSEYVAL 121 (140)
Q Consensus 107 l~~EN~~Lr~e~~~L 121 (140)
+..+|..|+.++..|
T Consensus 71 L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 71 LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444433
No 118
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.47 E-value=18 Score=27.13 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 103 QCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
..+.++..|..|+.++..-...|..+
T Consensus 109 ~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 109 EKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 119
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=74.42 E-value=4 Score=27.51 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
+.|..++..|...|..|..++..|+
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 120
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=73.90 E-value=4.3 Score=23.35 Aligned_cols=29 Identities=7% Similarity=0.179 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
..|..++..|..+|..|..++..|+.-|.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 45666777788888888888888876553
No 121
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=73.36 E-value=6.2 Score=23.07 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
.|..++..-..+...|+.+|..|..++.
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555677778888888877764
No 122
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=73.34 E-value=6.7 Score=25.92 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 63 ESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 63 eSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
.+-|+-|.+=...+.+|..-|....... .=..-+......+..|..++..|..+...|+..+..
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~-~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKL-NKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444566666666665320000 001112233344555555566666666655555543
No 123
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.11 E-value=12 Score=31.50 Aligned_cols=42 Identities=10% Similarity=-0.012 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
+..+..|+.++..|..+...+..++..+.+++...+..-..|
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554444444333333
No 124
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.42 E-value=32 Score=32.59 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039918 108 WKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 108 ~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
..+...|..+...|..++..+.
T Consensus 912 e~~l~~l~~~~~~Le~~l~ele 933 (1184)
T 1i84_S 912 EEMRVRLAAKKQELEEILHEME 933 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 125
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=71.99 E-value=23 Score=24.91 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 109 KENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 109 ~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
--...|..++..|...|..+.
T Consensus 83 l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 83 LARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555553
No 126
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=71.47 E-value=20 Score=23.91 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
++|+.+|..|..--..|..++..|...+ ..-...|++++..|..++..+
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy---~ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEY---ESMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccc
Confidence 3466666666666666666665555444 333456778888887777653
No 127
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=71.20 E-value=9.1 Score=21.96 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
+.|..+...|..+|..|..++..|+.-|.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 44555666777888888888887776553
No 128
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=70.88 E-value=5.1 Score=24.97 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
..+...+..+..||..|+.++..|..+|
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455677778888888888888777654
No 129
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.68 E-value=45 Score=27.69 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 85 RSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 85 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
....+......+++.+.++...+..+...+...+.+-.+.|.++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 33333333344444443333334444444444444444444443
No 130
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.34 E-value=12 Score=25.42 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
...-.+|..|+.+|..|..++..+..+
T Consensus 19 AsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 19 ANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334457888888888888888777654
No 131
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.16 E-value=21 Score=23.65 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNEL 97 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~ 97 (140)
...+.+|+.++.....+...|+.++
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 132
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.16 E-value=28 Score=24.68 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.4
Q ss_pred HHHHHH
Q 039918 53 RKKRRM 58 (140)
Q Consensus 53 Rr~RR~ 58 (140)
...||.
T Consensus 41 ~elrr~ 46 (131)
T 3tnu_A 41 SELRRT 46 (131)
T ss_dssp CHHHHH
T ss_pred HHHHHH
Confidence 334443
No 133
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=69.11 E-value=19 Score=30.44 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVA 120 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~ 120 (140)
.+.+|..++..|..++..+..++..+.+++...+.+...|--++.+
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555544444444444333333
No 134
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=69.11 E-value=0.071 Score=37.20 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKK 73 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk 73 (140)
.+..||.-+||.+|+.+|+||.
T Consensus 65 IrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 65 IRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHhhhhHHHHHHcchhhc
Confidence 4778999999999999999874
No 135
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.02 E-value=25 Score=24.07 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 039918 116 SEYVALRTRLSNL 128 (140)
Q Consensus 116 ~e~~~L~~~l~~l 128 (140)
+++..|..+++-|
T Consensus 86 ~ev~~L~Rriqll 98 (101)
T 3u1c_A 86 SEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555544
No 136
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=68.52 E-value=33 Score=27.16 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 52 ERKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQC 104 (140)
Q Consensus 52 eRr~RR~~sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~ 104 (140)
+...|+-+..|-.+=+ ..+..|+.++...+.|+..+...+...+++.
T Consensus 162 de~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 162 DSVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444322 2455556666666665555555554444433
No 137
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=68.38 E-value=25 Score=23.82 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYL 106 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~ 106 (140)
+.-.-.++.++......|..|..++..+..+...
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667777777776666665555544
No 138
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=67.90 E-value=26 Score=25.06 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 71 RKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 71 RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
.-+.++..|..+|..|..+... -.........||..|+.++..|+..
T Consensus 37 E~q~~v~ql~~~i~~Le~eL~e-------~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 37 ESQRVVLQLKGHVSELEADLAE-------QQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665554444 3334555677777888777776443
No 139
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=67.65 E-value=23 Score=23.24 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
.+.+...+..|+.+...++..+......|..|..=.-.|..++...+..|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666667777777777888888777655
No 140
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=67.08 E-value=27 Score=23.75 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 86 SAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 86 L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
.-.||..|...+..+......+..+|..|+. |..+++.|-.+|.
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e----lA~~~q~la~~i~ 79 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAE----VAEHVQYMAEVIE 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3457888888888888888888888887764 4455555555554
No 141
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=67.03 E-value=25 Score=23.46 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
-.....+|+.+...|..+...|..++..+...+..|......|...+..|..+|.
T Consensus 33 ~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 33 TERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455567777777777777777777788888888888888888888888887764
No 142
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=66.49 E-value=19 Score=24.10 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 039918 74 KQLEDLTEELN 84 (140)
Q Consensus 74 ~~leeLe~~v~ 84 (140)
..+..|..-|.
T Consensus 23 ~~f~~Lr~~vP 33 (88)
T 1nkp_A 23 RSFFALRDQIP 33 (88)
T ss_dssp HHHHHHHTTCG
T ss_pred HHHHHHHHHCC
Confidence 33444443333
No 143
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=66.39 E-value=24 Score=23.02 Aligned_cols=51 Identities=8% Similarity=0.081 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 80 TEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 80 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
..++..+.............+...+..|...+..|..++.....+|.....
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555555555555555555554443
No 144
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=66.13 E-value=29 Score=27.27 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
.+.++..|+.+|..|..++..|.. ...+|..+-.++..|.-+|-
T Consensus 70 ~erQ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 70 VERQVRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 345566666677777776666543 45778887777777776665
No 145
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=65.87 E-value=10 Score=25.10 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039918 106 LLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 106 ~l~~EN~~Lr~e~~~L~~~l 125 (140)
.+..|+..|+.+...|+.+|
T Consensus 58 ~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 146
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.67 E-value=32 Score=24.20 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=6.3
Q ss_pred ChHHHHHHHHHH
Q 039918 49 SDDERKKRRMIS 60 (140)
Q Consensus 49 ~~eeRr~RR~~s 60 (140)
..+....||.+.
T Consensus 35 k~Ei~elrr~iq 46 (129)
T 3tnu_B 35 KHEISEMNRMIQ 46 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555565554
No 147
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=65.31 E-value=20 Score=21.70 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
++|.+|+.|+.--..|..++..|..++ ..-...|+.++..|..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~---~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEY---NATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 455666666555555555555544333 2223455666555544
No 148
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.98 E-value=59 Score=26.94 Aligned_cols=48 Identities=13% Similarity=0.020 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 86 SAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 86 L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
++.+-...........++...+..||.+|+.++.++...+..+++-++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 333333445556666777888888899999888888888888776554
No 149
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=64.86 E-value=35 Score=24.30 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=40.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 039918 59 ISNRESARRSRWRKKKQLEDLTEELNRSAV---ENQVLKNELNIVLNQCYL-------LWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 59 ~sNReSArrSR~RKk~~leeLe~~v~~L~~---eN~~L~~~~~~l~~~~~~-------l~~EN~~Lr~e~~~L~~~l 125 (140)
..|=.+|-..=..|+..+++|..++..+.. ....|+.++..-..-+.. +..|...|..++..|..++
T Consensus 30 ~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 30 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 344456666667788888888888877776 555566666555444433 4444444444444444433
No 150
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=64.57 E-value=12 Score=20.91 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 97 LNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 97 ~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
+..|.....+.+.||-.|.+++..|...
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3455566777889999999999888654
No 151
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=64.15 E-value=31 Score=23.42 Aligned_cols=33 Identities=30% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 87 AVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 87 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
-.||..|...+..+.+....+..+|..|+.-+.
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888777776666666666666654433
No 152
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=63.87 E-value=39 Score=24.45 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELNIVLNQCYLL 107 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l 107 (140)
.+|+.++..|...|..|..++..+..++..+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777776666444
No 153
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=63.80 E-value=19 Score=20.85 Aligned_cols=29 Identities=14% Similarity=0.010 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 99 IVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 99 ~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
.|..+...|..+|..|..++..|+.-|..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 44455566677777777777777766654
No 154
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=63.70 E-value=30 Score=23.17 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 77 EDLTEELNRSAVENQVLKNELN-------IVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 77 eeLe~~v~~L~~eN~~L~~~~~-------~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.++..+|..|-.||.+|..--+ .|..+...|..|+..|+.++..++.-...+..
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ 65 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEE 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888887765443 34577777888888888888777665555543
No 155
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.51 E-value=16 Score=31.00 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 93 LKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 93 L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
|..++..+.+++..|..|+..|+.+...+...+..+.+=+..+|
T Consensus 47 l~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 47 IYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333334444444444444444444444433333333
No 156
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=63.13 E-value=27 Score=24.62 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
.+.....+.++..|+.++..|+..+.........+..+|..|..
T Consensus 10 ~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~ 53 (125)
T 1joc_A 10 LERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQI 53 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 35556667778888888888888887766666666666666553
No 157
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=62.85 E-value=26 Score=23.19 Aligned_cols=23 Identities=9% Similarity=-0.161 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 97 LNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 97 ~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
+..+..++.....+...|+.++.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433
No 158
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.82 E-value=39 Score=24.11 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNE 96 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~ 96 (140)
..++.|..+|..|+.+...++.+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E 37 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTE 37 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 159
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=62.81 E-value=14 Score=28.42 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
.+.+|..++.+|+.+|..|+.+.+...
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544444444433
No 160
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=62.54 E-value=11 Score=29.97 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 49 SDDERKKRRMISNRESARRSRWRKKKQ-------LEDLTEELNRSAVENQVLKNELNIVL 101 (140)
Q Consensus 49 ~~eeRr~RR~~sNReSArrSR~RKk~~-------leeLe~~v~~L~~eN~~L~~~~~~l~ 101 (140)
.++.+|.+|.+|-=.==-+-|.-+..- .+++..++..|..+|+.+..++..++
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk 175 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLE 175 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC---
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888866433333344434333 33444444444444444444444433
No 161
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=62.52 E-value=17 Score=20.63 Aligned_cols=27 Identities=7% Similarity=-0.194 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 99 IVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 99 ~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
.|..+...+..+|..|..++..|+.-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 444555666677777777777776544
No 162
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.49 E-value=32 Score=23.03 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVA 120 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~ 120 (140)
..+..|+.+++.-+.+-..++.++..+.+.+..--.|-..|+..+..
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555544444
No 163
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=61.41 E-value=26 Score=21.66 Aligned_cols=28 Identities=7% Similarity=0.164 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
.++.|..+|..|..+...|...+..+..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544443
No 164
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=59.46 E-value=38 Score=22.93 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 039918 117 EYVALRTRLSN 127 (140)
Q Consensus 117 e~~~L~~~l~~ 127 (140)
++..|..+++-
T Consensus 87 evasLnRriql 97 (101)
T 3u59_A 87 EVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555443
No 165
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=59.14 E-value=31 Score=21.78 Aligned_cols=59 Identities=19% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
.-+.+|+.++..++.--..+..++..+.-....+..++..=+..+..|..++..+.+.|
T Consensus 6 ~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~l 64 (65)
T 3m0d_C 6 KLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQTL 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 34556666666655544445555555544444444444444666777888877776543
No 166
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=58.98 E-value=37 Score=22.57 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
++.+=+.++..|+..-.-=..-...|...+-.+.-||..|..++..|.+
T Consensus 26 eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 26 ELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3444444455554433333333445555667778888888887766653
No 167
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=58.87 E-value=27 Score=20.94 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 102 NQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 102 ~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
+.+..++.|-+.|...+..|..+|+.+
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666666666544
No 168
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=58.48 E-value=33 Score=21.84 Aligned_cols=39 Identities=28% Similarity=0.196 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL 114 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L 114 (140)
+++|...+..-..+....+.++..++..+..|..|-..|
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555544444444445555544444444444333
No 169
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=58.47 E-value=37 Score=22.50 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
...++.+...+..+..+...++..+......|..|..=.-.|..++...+.-|.
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 446677777788888888888888888788888888888888888888887664
No 170
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=57.99 E-value=38 Score=27.97 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 039918 113 QLTSEYVALRTRLSNL 128 (140)
Q Consensus 113 ~Lr~e~~~L~~~l~~l 128 (140)
.+..++..|..+|..+
T Consensus 37 ~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 37 VNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 171
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=57.66 E-value=92 Score=27.05 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 106 LLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 106 ~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.+..+-..|+.++..|...+..+..
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~ 144 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEE 144 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555444444433
No 172
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.97 E-value=14 Score=27.28 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+..|...+.....+...|..++..-.......+.++..+..++..|.+-|
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555655555555555666666666666666665554
No 173
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=56.80 E-value=30 Score=20.98 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 93 LKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 93 L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
|+.++..|.....+|+....-|..-+..|++.++.+
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444433
No 174
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=56.52 E-value=47 Score=23.02 Aligned_cols=70 Identities=20% Similarity=0.203 Sum_probs=45.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 59 ISNRESARRSRWRKKKQLEDLTEELNRSA---VENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 59 ~sNReSArrSR~RKk~~leeLe~~v~~L~---~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
..|-.+|-..=..|+..+++|...+.... ..+..|+.++..-..-+..-...-..+..+...|...|..+
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34556666777778899999988888777 56666777776666555555544455555555555555444
No 175
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=56.37 E-value=49 Score=23.26 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 103 QCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
.+...+.|...|+.++.+|+..|.
T Consensus 12 ~~~~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 12 RCLKGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443
No 176
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=55.97 E-value=26 Score=26.97 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 103 QCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+...|..||.+|+.+......++
T Consensus 160 ~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 160 KNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555555444443
No 177
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.83 E-value=73 Score=34.09 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSA 87 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~ 87 (140)
+++.+.+++.+++.|+
T Consensus 2033 ~~~~L~~le~~l~~L~ 2048 (3245)
T 3vkg_A 2033 IVATITALEKSIATYK 2048 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 178
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=55.77 E-value=40 Score=22.03 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~ 99 (140)
..|+..|+.++..|..++..|...+..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777777777777777665544
No 179
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=55.54 E-value=34 Score=21.13 Aligned_cols=45 Identities=7% Similarity=0.102 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 81 EELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 81 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
.++.+|..+.+.|..++..|......+..+-..-+.|...-..||
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666665555555555555555555444444
No 180
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=54.37 E-value=28 Score=19.87 Aligned_cols=29 Identities=10% Similarity=-0.022 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
..|..+...|..+|..|..++..|+.-|.
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 34455556666777777777776665553
No 181
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=53.83 E-value=47 Score=22.24 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 91 QVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 91 ~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
..|-.++..|......+..|+..+++-...+..++..+.
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554443
No 182
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.50 E-value=34 Score=20.54 Aligned_cols=17 Identities=24% Similarity=0.175 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNI 99 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~ 99 (140)
|++|+.+...|.+++..
T Consensus 5 vaqlenevaslenenet 21 (49)
T 3he5_A 5 VAQLENEVASLENENET 21 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHH
Confidence 34444444444433333
No 183
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=53.04 E-value=18 Score=23.93 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 039918 106 LLWKENEQLTSEYVAL 121 (140)
Q Consensus 106 ~l~~EN~~Lr~e~~~L 121 (140)
.|..+|..|+.++..|
T Consensus 47 rL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 47 ILMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444455544443
No 184
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=52.42 E-value=15 Score=22.46 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNEL 97 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~ 97 (140)
.|++.|+.++..|+.....|...+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888887777666543
No 185
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=52.00 E-value=43 Score=22.61 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
+++.+.+.+...|+..|..|..+++.|..+
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 344444555555555555555555555443
No 186
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=51.33 E-value=66 Score=23.19 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 94 KNELNIVLNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 94 ~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
...+..+...+..|...|..|..++..++..+.
T Consensus 49 ~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~ 81 (155)
T 2oto_A 49 FKRAEELEKAKQALEDQRKDLETKLKELQQDYD 81 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555556666666655555554443
No 187
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=51.25 E-value=83 Score=24.34 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKE 110 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~E 110 (140)
+..|..++..|..++.....++..|+++...+..+
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555444444444444444433
No 188
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=51.22 E-value=49 Score=21.73 Aligned_cols=32 Identities=28% Similarity=0.214 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKE 110 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~E 110 (140)
|...|..|..|+..|..++..+.+.+..+..|
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ee 33 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDE 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777666655533
No 189
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=50.59 E-value=52 Score=21.85 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.+...+.....|...+..|..+.+.|..++..++.-...|-+.-..|...|.++..
T Consensus 29 ~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 29 DLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666777777777777777777666677777777777777777776654
No 190
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=50.33 E-value=12 Score=29.70 Aligned_cols=36 Identities=6% Similarity=0.002 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
.+..+...+..+..++..||+.+++++..|+..+..
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555556666667777777777777666543
No 191
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=50.32 E-value=76 Score=23.62 Aligned_cols=51 Identities=24% Similarity=0.160 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
--.++.|..-+-.|+.|-..=+-+.......+..|..||..+++.+...+.
T Consensus 111 DsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 111 DSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRA 161 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 345566666666666665555555666777788888888888888776543
No 192
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=49.09 E-value=58 Score=21.95 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 039918 78 DLTEELNRSAV 88 (140)
Q Consensus 78 eLe~~v~~L~~ 88 (140)
+|-.+|+.|+.
T Consensus 23 ~L~qEi~~Lr~ 33 (81)
T 3qh9_A 23 ELLQELRHLKI 33 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 193
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=47.33 E-value=96 Score=23.95 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
.+..|..++..+..+...|..++..+..+...+..+-..+..++..+...|
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444444444444444444444444
No 194
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=47.18 E-value=15 Score=23.93 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRS 86 (140)
Q Consensus 73 k~~leeLe~~v~~L 86 (140)
...+..|..-|..+
T Consensus 28 n~~f~~Lr~lvP~~ 41 (80)
T 1hlo_A 28 KDSFHSLRDSVPSL 41 (80)
T ss_dssp HHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHCcCC
Confidence 45556665555543
No 195
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=46.05 E-value=60 Score=21.26 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
-...+..+...+..|..+-..++..+......|..|..=.-.|..++...+.-|
T Consensus 24 ~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 24 FAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344566677777777777777777777777777777777777888887777655
No 196
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=46.05 E-value=52 Score=21.32 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l 100 (140)
|...+.+|+..+..-..++..|+.++...
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888887777777777777665543
No 197
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=45.41 E-value=68 Score=21.69 Aligned_cols=19 Identities=16% Similarity=-0.011 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 100 VLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 100 l~~~~~~l~~EN~~Lr~e~ 118 (140)
|-..+..+..|+..|+.+.
T Consensus 51 Lh~~ie~l~eEi~~lk~en 69 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKEN 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 198
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=45.22 E-value=68 Score=26.47 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 039918 115 TSEYVALR 122 (140)
Q Consensus 115 r~e~~~L~ 122 (140)
..++..|.
T Consensus 46 ~~~i~~l~ 53 (323)
T 1lwu_C 46 QQQLVDIR 53 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 199
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=44.72 E-value=81 Score=22.34 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039918 110 ENEQLTSEYVALRTRLSNLYRILGSMQ 136 (140)
Q Consensus 110 EN~~Lr~e~~~L~~~l~~l~~il~~~~ 136 (140)
.+..-+.++..|..++..-.+.|..||
T Consensus 39 k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 39 SSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554443
No 200
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=44.47 E-value=82 Score=22.35 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~ 118 (140)
+.+.-|+.++..++..-..=+..-..+......|..++..|..++
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 367778888887776554433334444444444555555554444
No 201
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=44.33 E-value=24 Score=25.31 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 101 LNQCYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 101 ~~~~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
..+...|..|+..|+.++..|+.++.
T Consensus 31 ~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 31 PKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 202
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=43.89 E-value=1.1e+02 Score=25.99 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 69 RWRKKKQLEDLTEELNRSAVENQVLKNE---LNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 69 R~RKk~~leeLe~~v~~L~~eN~~L~~~---~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
|+.-+..+++|.++.+.+..+...++.. ...+..+...+..+-..|.+++.++...+..+
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 203
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.60 E-value=38 Score=22.60 Aligned_cols=28 Identities=7% Similarity=0.227 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
+.+|..++..+..+|..|..++..+...
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~ 29 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAED 29 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4677888888888888877777666433
No 204
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.68 E-value=65 Score=20.68 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 101 LNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 101 ~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
...+..|..++..|..++..|+.
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666553
No 205
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=42.50 E-value=79 Score=21.55 Aligned_cols=33 Identities=27% Similarity=0.207 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 102 NQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 102 ~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
.+...|+.+|..|..++..|+..+..+..-+..
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888888888777776555443
No 206
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=42.30 E-value=1.1e+02 Score=23.15 Aligned_cols=62 Identities=6% Similarity=-0.031 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 67 RSRWRKKKQLEDLTEEL-NRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 67 rSR~RKk~~leeLe~~v-~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
+-|.+.+.++..-+..+ ..|+.-...|......+......++.+-..|...+..|......+
T Consensus 27 ~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 27 EDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444 334445555555555555555555555555555555555543333
No 207
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=42.12 E-value=44 Score=18.54 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 101 LNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 101 ~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
..+...|...|-.-++.+..|+.+
T Consensus 7 kkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 7 KKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444455555555555544
No 208
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.04 E-value=1.4e+02 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 106 LLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 106 ~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
.+..+-..|+.++..|...+..+..-|
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665554433
No 209
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.69 E-value=1.1e+02 Score=27.42 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il 132 (140)
.|..++..|++.+......-+.|+.-|..++.+++.|+--|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544444445556666666666666555444
No 210
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=40.54 E-value=68 Score=20.26 Aligned_cols=34 Identities=18% Similarity=-0.044 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+|+..+..|..+...|+..+..-.+++..|++.|
T Consensus 15 kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 211
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.51 E-value=56 Score=27.67 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~ 99 (140)
|+.+...|..++..++.+...
T Consensus 54 le~~~~~L~~e~e~l~~~~~~ 74 (428)
T 4b4t_K 54 LEKEYELLTLQEDYIKDEQRH 74 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333
No 212
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=39.42 E-value=1.1e+02 Score=22.44 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhc
Q 039918 94 KNELNIVLNQCYLLWKEN----EQLTSEYVALRTRLSNLYRILGSM 135 (140)
Q Consensus 94 ~~~~~~l~~~~~~l~~EN----~~Lr~e~~~L~~~l~~l~~il~~~ 135 (140)
...+..+......|...+ ..+.+....|..++..|.++..+.
T Consensus 158 ~~~v~~l~~~~~~Ll~~~h~~~~~I~~~~~~l~~~W~~L~~L~~~~ 203 (210)
T 3pdy_A 158 EKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCI 203 (210)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444332 345666677777777777766554
No 213
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.20 E-value=98 Score=21.71 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
+..|..+...++..+......|..|..=.-.|..++...
T Consensus 86 i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatY 124 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 214
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=38.94 E-value=1.4e+02 Score=23.46 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 92 VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 92 ~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
.++.++..+...+.....|++.+++.++..+..++.+++
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555666666666666666666543
No 215
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=38.55 E-value=77 Score=20.31 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 93 LKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 93 L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
++..+..-..+..+|..=|..|-.|+..++.++..|
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~L 53 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKL 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 444444445555556666666666666666655554
No 216
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=38.33 E-value=19 Score=22.22 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVL 93 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L 93 (140)
..+++.|+.+|+.|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888887755444
No 217
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=38.30 E-value=1.9e+02 Score=25.51 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 80 TEELNRSAVENQVLKNELNIV 100 (140)
Q Consensus 80 e~~v~~L~~eN~~L~~~~~~l 100 (140)
..+-+.+.+||..++.++...
T Consensus 40 ~a~n~~i~aeNeaikkrNa~a 60 (497)
T 3iox_A 40 NAANAALTAENTAIKKRNADA 60 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443
No 218
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.48 E-value=1e+02 Score=24.92 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 80 TEELNRSAVENQVLKNELNIVLNQCYLLWKEN 111 (140)
Q Consensus 80 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN 111 (140)
+.+++.|..+|+.|..++..|......+...|
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n 215 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKAN 215 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45667777777777777777765555544433
No 219
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.31 E-value=63 Score=26.19 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 103 QCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
+...+..+|..|.+++.+|....
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 220
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.09 E-value=2.1e+02 Score=24.84 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 102 NQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 102 ~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
.+...+..+-..|.+++..+...+
T Consensus 78 ~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 78 AEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 221
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=36.91 E-value=35 Score=30.00 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
...+|+.++.+++.+.......+..-.+....|..+......+...|..+-..+.+.+.-
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~ 395 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQR 395 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888888877777778877777777777777766666555443
No 222
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.53 E-value=1.3e+02 Score=22.49 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 102 NQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 102 ~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
..+..+..|-..|+.++...+.+
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666555443
No 223
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=36.20 E-value=16 Score=25.76 Aligned_cols=18 Identities=22% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039918 105 YLLWKENEQLTSEYVALR 122 (140)
Q Consensus 105 ~~l~~EN~~Lr~e~~~L~ 122 (140)
..|..+|..|...+.+|.
T Consensus 94 ~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 94 KKLEHANRHLLLRVQELE 111 (118)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 224
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=35.83 E-value=1.3e+02 Score=22.24 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=31.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 60 SNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 60 sNReSArrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
.|..|---|=.+=-++.+.++.++..|.......-.+.......+..|..+...|..++.
T Consensus 56 ~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 56 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555566666666655555555555555555555555555544443
No 225
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.55 E-value=74 Score=19.24 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTS 116 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~ 116 (140)
|..+++.|...|-.|...-+.|..-+.-|..|-.+|.-
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 44556666666666666555555544444444444433
No 226
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=34.83 E-value=79 Score=19.37 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 103 QCYLLWKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 103 ~~~~l~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
-...|+..|.-|...+..|..-+.++.+
T Consensus 25 ivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 25 IVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666666544
No 227
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=34.82 E-value=1.6e+02 Score=22.96 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 85 RSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALR 122 (140)
Q Consensus 85 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~ 122 (140)
+|+++......+.+.|+.....+..||+.|+..+..|.
T Consensus 34 ~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 34 QLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 34444444445555555556666666666666666553
No 228
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=34.66 E-value=1e+02 Score=20.69 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNI 99 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~ 99 (140)
+.+.+|.-+|..+..|-.+...++..
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKs 51 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKA 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555554444444443333
No 229
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=34.43 E-value=1.1e+02 Score=20.72 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 83 LNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 83 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
+..|..+...+..++..+......+..+-...-.+...+
T Consensus 27 L~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~ 65 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEF 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 230
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=34.31 E-value=13 Score=29.36 Aligned_cols=14 Identities=21% Similarity=0.026 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 039918 104 CYLLWKENEQLTSE 117 (140)
Q Consensus 104 ~~~l~~EN~~Lr~e 117 (140)
...|..||..|+.+
T Consensus 28 N~~Lk~e~~~l~~~ 41 (255)
T 2j5u_A 28 NQHLKERLEELAQL 41 (255)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 231
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.41 E-value=1e+02 Score=20.33 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhc
Q 039918 121 LRTRLSNLYRILGSM 135 (140)
Q Consensus 121 L~~~l~~l~~il~~~ 135 (140)
|..++..|.+=|.++
T Consensus 68 LE~kvesL~eEl~fL 82 (86)
T 3swk_A 68 LERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 232
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.49 E-value=1.3e+02 Score=21.24 Aligned_cols=31 Identities=3% Similarity=0.041 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 99 IVLNQCYLLWKENEQLTSEYVALRTRLSNLY 129 (140)
Q Consensus 99 ~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~ 129 (140)
.+..+...+..+-..|...+..|...+..+.
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 233
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.47 E-value=2.4e+02 Score=25.15 Aligned_cols=45 Identities=7% Similarity=-0.017 Sum_probs=24.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 89 ENQVLKNELN-IVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 89 eN~~L~~~~~-~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
+|..-..++. .|++++..|..+-..--..+..|+.-|.++..=|+
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445554 66666666655443333666666666666554443
No 234
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=32.47 E-value=47 Score=25.67 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNE 96 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~ 96 (140)
..+.+|+.+..+|+.||++|.++
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555543
No 235
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=32.35 E-value=1.7e+02 Score=22.52 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 039918 69 RWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQL--TSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 69 R~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L--r~e~~~L~~~l~~l~~il 132 (140)
..||.+-++-|..++..|+.+-..|..++..-...-..++.--..+ -.+....+..+.++..|+
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv 79 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNIT 79 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888877777666544333332232222222 233444455555555544
No 236
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=32.04 E-value=96 Score=19.50 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 108 WKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 108 ~~EN~~Lr~e~~~L~~~l~ 126 (140)
..|...|+-.+..|...|.
T Consensus 55 k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 237
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=31.91 E-value=2.6e+02 Score=24.53 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYL 106 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~ 106 (140)
+-+..++..+++|..+..++..+.+++..
T Consensus 31 ~Ye~~~ae~~a~n~~i~aeNeaikkrNa~ 59 (497)
T 3iox_A 31 AYEAAVAANNAANAALTAENTAIKKRNAD 59 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34444445555555555555444444433
No 238
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=31.78 E-value=1.8e+02 Score=22.42 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 72 KKKQLEDLTEELNRSAVENQVLKNELNIVLN 102 (140)
Q Consensus 72 Kk~~leeLe~~v~~L~~eN~~L~~~~~~l~~ 102 (140)
-++....|..++..|..+...|..++..+..
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666655543
No 239
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.54 E-value=1.2e+02 Score=19.98 Aligned_cols=30 Identities=3% Similarity=-0.109 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 98 NIVLNQCYLLWKENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 98 ~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~ 127 (140)
..+...+..++.+-..++.++......+..
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ql~EYq~ 60 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQQLDEYQE 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555544444333333
No 240
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=29.88 E-value=1.4e+02 Score=20.67 Aligned_cols=40 Identities=20% Similarity=0.085 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 66 RRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCY 105 (140)
Q Consensus 66 rrSR~RKk~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~ 105 (140)
.-||.-=...-++|+.-++.|+.+|..=...+..+..++.
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akid 56 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444556666666666666655555555544433
No 241
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.73 E-value=1e+02 Score=19.93 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 102 NQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 102 ~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
.....|+.++..=..++.+|+.+|..+..++.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555555555556666666655555543
No 242
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.19 E-value=68 Score=27.21 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 107 LWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 107 l~~EN~~Lr~e~~~L~~~l 125 (140)
+..|+..|+.++.++..++
T Consensus 51 ~~~e~~~~~~~~~~~~~~i 69 (434)
T 4b4t_M 51 LSHENNVMLEKIKDNKEKI 69 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 243
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.15 E-value=2.7e+02 Score=23.75 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 91 QVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 91 ~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~il~ 133 (140)
..|..++..|++.+..-...-..|+.-+..++.+++.|+-.|.
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555556666666666666666655543
No 244
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.81 E-value=2e+02 Score=24.04 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 69 RWRKKKQLEDLTEELNRSAVENQ-VLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 69 R~RKk~~leeLe~~v~~L~~eN~-~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
|+.-+..+++|..+.+.+..+.. .-......+..+...+..+-..|.+++.++...+..+
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 245
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=28.65 E-value=36 Score=24.25 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 100 VLNQCYLLWKENEQLTSEY 118 (140)
Q Consensus 100 l~~~~~~l~~EN~~Lr~e~ 118 (140)
|..++..|.-||..|+.++
T Consensus 13 LaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 13 MVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555444
No 246
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=28.52 E-value=1.9e+02 Score=21.68 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 039918 109 KENEQLTSEYVAL 121 (140)
Q Consensus 109 ~EN~~Lr~e~~~L 121 (140)
.-|..|+.++..|
T Consensus 197 ~ln~~L~~eLp~l 209 (251)
T 2fic_A 197 EMNVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3367777777666
No 247
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=28.27 E-value=2.2e+02 Score=23.26 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 112 EQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 112 ~~Lr~e~~~L~~~l~~l~~il 132 (140)
..|..++..+..++..+..++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~ 304 (426)
T 1lrz_A 284 DNLQQQLDANEQKIEEGKRLQ 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665543
No 248
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=28.24 E-value=1.6e+02 Score=20.82 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
++..+|..|..++..|..++..+..+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 249
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.17 E-value=2.9e+02 Score=23.85 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWK-----------ENEQLTSEYVALRTRLSNLYRILGS 134 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~-----------EN~~Lr~e~~~L~~~l~~l~~il~~ 134 (140)
.+-+|..+...+..+-..|+.+.+.+..++..+.. +-..|++++..|..++..+..-+..
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 141 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQ 141 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555565555555555554332 2246777777777777776655543
No 250
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=28.15 E-value=1.5e+02 Score=20.93 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNEL 97 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~ 97 (140)
.+.+|+.+|+.++..|++|+.-.
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF 27 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVF 27 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555433
No 251
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=27.95 E-value=1.4e+02 Score=20.61 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 039918 79 LTEELNRSAVEN 90 (140)
Q Consensus 79 Le~~v~~L~~eN 90 (140)
|..++..|..+-
T Consensus 11 Lk~El~~L~~~E 22 (106)
T 2aze_B 11 LTQDLRQLQESE 22 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 252
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.26 E-value=1e+02 Score=18.29 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 100 VLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 100 l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
|.+++..+..|-..-++++..|+.++..|..+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666666666676666666554
No 253
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.86 E-value=1.6e+02 Score=20.34 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 109 KENEQLTSEYVALRTRLSN 127 (140)
Q Consensus 109 ~EN~~Lr~e~~~L~~~l~~ 127 (140)
.+-..+..+...|..+|.+
T Consensus 76 ~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 76 KEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344444555555555544
No 254
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=26.63 E-value=1.4e+02 Score=19.81 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 115 TSEYVALRTRLSNLYRILG 133 (140)
Q Consensus 115 r~e~~~L~~~l~~l~~il~ 133 (140)
+..+..|+.+|..+.+.|+
T Consensus 51 ~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 51 RAAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666554
No 255
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=25.81 E-value=1.6e+02 Score=19.91 Aligned_cols=52 Identities=21% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l 125 (140)
..+..+...+..|+.+-..++..+......|..|..=.-.|..++...+.-|
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666666777777666544
No 256
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=25.64 E-value=3.3e+02 Score=23.55 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039918 111 NEQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 111 N~~Lr~e~~~L~~~l~~l~~il 132 (140)
-..|+.++..|...+..+..-+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~ 134 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEER 134 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666554433
No 257
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.00 E-value=2.2e+02 Score=21.06 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 039918 118 YVALRTRLSNLYRILGS 134 (140)
Q Consensus 118 ~~~L~~~l~~l~~il~~ 134 (140)
...|..++.+...+|..
T Consensus 117 ~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 117 NKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444333333
No 258
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=23.96 E-value=2.5e+02 Score=21.92 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 91 QVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNL 128 (140)
Q Consensus 91 ~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l 128 (140)
++|...+......+..|..--+.|+++...|+..|..+
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kL 70 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNL 70 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 44555555555555555555555566666665555554
No 259
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=23.83 E-value=2.2e+02 Score=21.05 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 104 CYLLWKENEQLTSEYVALRTRLS 126 (140)
Q Consensus 104 ~~~l~~EN~~Lr~e~~~L~~~l~ 126 (140)
..++...|..-..++..|++.+.
T Consensus 48 VDQlqKRn~~HQKEi~~Lrae~~ 70 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKLRAELG 70 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHH
Confidence 33344444443444444433333
No 260
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=23.31 E-value=1.1e+02 Score=17.22 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 93 LKNELNIVLNQCYLLWKENEQLTSEYVAL 121 (140)
Q Consensus 93 L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L 121 (140)
|+.++..|.+++.-+.-.-..|++.+..|
T Consensus 6 lkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 6 LKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555555555555555443
No 261
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=23.20 E-value=1.4e+02 Score=18.31 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTRLSNLYRI 131 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~l~~l~~i 131 (140)
.|+.++..++.--..+..++..+.-....+..++...+..+..|..++..+...
T Consensus 9 ~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~~ 62 (66)
T 3m0a_A 9 SLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERS 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHH
Confidence 344444444433333444454444444555555555566667777777666554
No 262
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=22.61 E-value=2.4e+02 Score=23.51 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039918 108 WKENEQLTSEYVALRTRLSNLYR 130 (140)
Q Consensus 108 ~~EN~~Lr~e~~~L~~~l~~l~~ 130 (140)
..+-..|+.++..|...+..+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVEE 96 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555443
No 263
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=22.48 E-value=1.8e+02 Score=19.47 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 73 KKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYVALRTR 124 (140)
Q Consensus 73 k~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~~ 124 (140)
-.|+..|..++..+..+.. +...++..|..|--.+.+|.-.
T Consensus 38 vdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHHHH
Confidence 5777777666655544433 3445788888888777776543
No 264
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.34 E-value=1.7e+02 Score=19.08 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKENEQLTSEYV 119 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr~e~~ 119 (140)
..+..|+.+++.-+.+-..++.++..+.+.+..--.|-..|+..+.
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444444444444444555555554444444444444444433
No 265
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.29 E-value=1.4e+02 Score=18.15 Aligned_cols=31 Identities=16% Similarity=-0.052 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 93 LKNELNIVLNQCYLLWKENEQLTSEYVALRT 123 (140)
Q Consensus 93 L~~~~~~l~~~~~~l~~EN~~Lr~e~~~L~~ 123 (140)
|+.-+..|..+...|+.-...+.+|+..|++
T Consensus 9 LKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 9 LKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3333333344444444444444444443333
No 266
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.73 E-value=1.7e+02 Score=19.02 Aligned_cols=31 Identities=19% Similarity=0.152 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 78 DLTEELNRSAVENQVLKNELNIVLNQCYLLW 108 (140)
Q Consensus 78 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~ 108 (140)
+|...|..|..|+..|..++..+.+.+..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888887777766554
No 267
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.56 E-value=2.6e+02 Score=21.17 Aligned_cols=37 Identities=8% Similarity=-0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKE 110 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~E 110 (140)
..+..|+.+++.|+.++...+.+...+.+.......|
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~e 171 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLE 171 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 268
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.17 E-value=4e+02 Score=22.97 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039918 107 LWKENEQLTSEYVALRTRL 125 (140)
Q Consensus 107 l~~EN~~Lr~e~~~L~~~l 125 (140)
+..+-..|.+++..+...+
T Consensus 116 l~~~i~~le~~~~~~~~~~ 134 (484)
T 3lss_A 116 LSDQVAGLAKEAQQLEEER 134 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333
No 269
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=21.13 E-value=2.9e+02 Score=21.79 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039918 76 LEDLTEELNRSAVENQVL 93 (140)
Q Consensus 76 leeLe~~v~~L~~eN~~L 93 (140)
++++|.+++.|......+
T Consensus 8 vd~~EErIs~le~rleei 25 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEI 25 (233)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 270
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.13 E-value=1.3e+02 Score=25.33 Aligned_cols=21 Identities=5% Similarity=0.197 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLK 94 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~ 94 (140)
..+.+++..+.........|.
T Consensus 25 ~~i~~~~~~~~~~~~~~~~l~ 45 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVRRLE 45 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444333333
No 271
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.05 E-value=4e+02 Score=22.97 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039918 112 EQLTSEYVALRTRLSNLYRIL 132 (140)
Q Consensus 112 ~~Lr~e~~~L~~~l~~l~~il 132 (140)
..|+..+..|+.++..|...+
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666665544
No 272
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=20.60 E-value=2.2e+02 Score=19.67 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039918 116 SEYVALRTRLSNLYRILG 133 (140)
Q Consensus 116 ~e~~~L~~~l~~l~~il~ 133 (140)
..+..|+.+|..+.+.|+
T Consensus 52 ~~V~~lq~Ki~elkr~lA 69 (96)
T 2ic9_A 52 AAVSALETKLGELKRELA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 273
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=20.46 E-value=1.8e+02 Score=18.69 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 75 QLEDLTEELNRSAVENQVLKNELNIVLNQCYLLWKEN 111 (140)
Q Consensus 75 ~leeLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN 111 (140)
..+++..++..|+.|-.-.-.++..+.--|+..+.++
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~ 53 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENEGEN 53 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 3444444555555544444445555555555444333
No 274
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=20.43 E-value=39 Score=21.09 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 039918 118 YVALRTRLSNLYRILGSM 135 (140)
Q Consensus 118 ~~~L~~~l~~l~~il~~~ 135 (140)
+..|..+|..|+.+|..+
T Consensus 60 ~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 60 LKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444444444444433
No 275
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=20.17 E-value=2.2e+02 Score=21.89 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAVENQVLKNELNIVLNQ 103 (140)
Q Consensus 74 ~~leeLe~~v~~L~~eN~~L~~~~~~l~~~ 103 (140)
+.+.-.=.+++.|+++|..|..+++.|...
T Consensus 154 ELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 154 ELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555567778888887777776666544
No 276
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.17 E-value=1.2e+02 Score=25.56 Aligned_cols=8 Identities=38% Similarity=0.040 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 039918 86 SAVENQVL 93 (140)
Q Consensus 86 L~~eN~~L 93 (140)
++.++..+
T Consensus 44 l~~e~~r~ 51 (434)
T 4b4t_M 44 FRSELQRL 51 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 277
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=20.10 E-value=1.7e+02 Score=18.30 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039918 79 LTEELNRSAVENQVLKN 95 (140)
Q Consensus 79 Le~~v~~L~~eN~~L~~ 95 (140)
|..+|..|+.+|..|..
T Consensus 15 LkDqV~eL~qe~k~m~k 31 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555554444444
No 278
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.07 E-value=2e+02 Score=19.15 Aligned_cols=17 Identities=6% Similarity=0.161 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039918 114 LTSEYVALRTRLSNLYR 130 (140)
Q Consensus 114 Lr~e~~~L~~~l~~l~~ 130 (140)
-+.++..|..++.++..
T Consensus 93 r~~q~~~L~~kf~e~m~ 109 (127)
T 1ez3_A 93 RKTQHSTLSRKFVEVMS 109 (127)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666777777766643
No 279
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.01 E-value=2.2e+02 Score=19.53 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 039918 74 KQLEDLTEELNRSAV 88 (140)
Q Consensus 74 ~~leeLe~~v~~L~~ 88 (140)
..+.-|..+|..++.
T Consensus 40 E~i~vLk~Qv~IY~~ 54 (94)
T 3jsv_C 40 ETVPVLKAQADIYKA 54 (94)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555544
Done!