BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039923
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 135/316 (42%), Gaps = 38/316 (12%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
V++G G SGL+A L+ G+ +I++ E+ W+ + L L P + +P P
Sbjct: 7 VVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ-HAWHSLHLFSPAGWSSIPGWPM 65
Query: 74 PREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRW 132
P YP+ + + Y+ Y + + L VQ + RV + +++ R
Sbjct: 66 PASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGE--RLRVVARDGRQWLARA 123
Query: 133 LIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLC 192
+I ATG P+ G+ F G LH++ Y F +V ++G GNSG +I ++
Sbjct: 124 VISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEV- 182
Query: 193 KNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFP---VDVVDRFLLFCSRLVLGDT 249
S+ A + W+ + P D VD +LF
Sbjct: 183 ------------------------STVAETTWITQHEPAFLADDVDGRVLFERATERWKA 218
Query: 250 KQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPGIQKFTAKGAEFVNRTVK 309
+Q G + P + P + + V PVLD A G + VP +F+ G ++ + T +
Sbjct: 219 QQEG-REPDLPPGGFGDIVMVPPVLDARA-----RGVLAAVPPPARFSPTGMQWADGTER 272
Query: 310 EFDSIILATGYRSNVS 325
FD++I TG+R +S
Sbjct: 273 AFDAVIWCTGFRPALS 288
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 22/214 (10%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
++VGAG SGL A L+E G +IE + +W Y P C + + +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCDIESIEY 72
Query: 74 PREYPA-----------YPSGQQFITYMEAYANHFEIEP--LLGQEVQWAKYDAAMGHWR 120
+ Y S + + Y+ A+ F++ V A +D A W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 121 VKT-HEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNG-VEFRASKVLVV 178
V T H R+LI+A+G+ VP LP PG+ +F G L HT + + V+F +V V+
Sbjct: 133 VDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVI 192
Query: 179 GCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKK 212
G G+SG+++S + K A++ + R +P +
Sbjct: 193 GTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPAR 226
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 22/214 (10%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
++VGAG SGL A L+E G +IE + +W Y P C + + +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCDIESIEY 72
Query: 74 PREYPA-----------YPSGQQFITYMEAYANHFEIEP--LLGQEVQWAKYDAAMGHWR 120
+ Y S + + Y+ A+ F++ V A +D A W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 121 VKT-HEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNG-VEFRASKVLVV 178
V T H R+LI+A+G+ VP LP PG+ +F G L HT + + V+F +V V+
Sbjct: 133 VDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVI 192
Query: 179 GCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKK 212
G G+SG+++S + K A++ + R +P +
Sbjct: 193 GTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPAR 226
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 22/214 (10%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
++VGAG SGL A L+E G +IE + +W Y P C + + +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCDIESIEY 72
Query: 74 PREYPA-----------YPSGQQFITYMEAYANHFEIEP--LLGQEVQWAKYDAAMGHWR 120
+ Y S + + Y+ A+ F++ V A +D A W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 121 VKT-HEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNG-VEFRASKVLVV 178
V T H R+LI+A+G+ VP LP PG+ +F G L HT + + V+F +V V+
Sbjct: 133 VDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVI 192
Query: 179 GCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKK 212
G G+SG+++S + K A++ + R +P +
Sbjct: 193 GTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPAR 226
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 22/214 (10%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
++VGAG SGL A L+E G +IE + +W Y P C + + +
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCAIESIEY 72
Query: 74 PREYPA-----------YPSGQQFITYMEAYANHFEIEP--LLGQEVQWAKYDAAMGHWR 120
+ Y S + + Y+ A+ F++ V A +D A W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 121 VKT-HEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNG-VEFRASKVLVV 178
V T H R+LI+A+G+ VP LP PG+ +F G L HT + + V+F +V V+
Sbjct: 133 VDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVI 192
Query: 179 GCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKK 212
G G+SG+++S + K A++ + R +P +
Sbjct: 193 GTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPAR 226
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 22/212 (10%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
V+VGAG +GL A + +G+ E S + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 74 PREYP-----------AYPSGQQFITYMEAYANHFEI--EPLLGQEVQWAKYDAAMGHWR 120
+ Y + + + Y+E A+ F++ + V A D W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 121 VKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTY-KNGVEFRASKVLVV 178
V+T E R+L+VA G P G+ F G ++HT+ + +GV+F +V V+
Sbjct: 138 VRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVI 197
Query: 179 GCGNSGMEISFDLCKNGAQVSLVVRDKVHILP 210
G G+SG++ + + Q+ + R + +P
Sbjct: 198 GTGSSGIQSIPIIAEQAEQLFVFQRSANYSIP 229
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 22/212 (10%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
V+VGAG +GL A + +G+ E S + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 74 PREYP-----------AYPSGQQFITYMEAYANHFEI--EPLLGQEVQWAKYDAAMGHWR 120
+ Y + + + Y+E A+ F++ + V A D W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 121 VKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTY-KNGVEFRASKVLVV 178
V+T E R+L+VA G P G+ F G ++HT+ + +GV+F +V V+
Sbjct: 138 VRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVI 197
Query: 179 GCGNSGMEISFDLCKNGAQVSLVVRDKVHILP 210
G G+SG++ + + Q+ + R + +P
Sbjct: 198 GTGSSGIQSIPIIAEQAEQLFVFQRSANYSIP 229
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 22/212 (10%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
V+VGAG +GL A + +G+ E S + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 74 PREYP-----------AYPSGQQFITYMEAYANHFEI--EPLLGQEVQWAKYDAAMGHWR 120
+ Y + + + Y+E A+ F++ + V A D W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 121 VKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTY-KNGVEFRASKVLVV 178
V+T E R+L+VA G P G+ F G ++HT+ + +GV+F +V V+
Sbjct: 138 VRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVI 197
Query: 179 GCGNSGMEISFDLCKNGAQVSLVVRDKVHILP 210
G G+SG++ + + Q+ + R + +P
Sbjct: 198 GTGSSGIQSIPIIAEQAEQLFVFQRSANYSIP 229
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 19/203 (9%)
Query: 1 MSSKAKRFWTPG--PVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQ 58
MS++AK +P V++GAG +G+ A + + G+ L IE + W Y +
Sbjct: 1 MSNRAK---SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCR 57
Query: 59 LHLPKQ----FCQLPYVPFPREYPAYPSGQQFITYMEAYANHFEIEP--LLGQEVQWAKY 112
L F +P + S + + Y+ A+ ++ V A+Y
Sbjct: 58 LDTESYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARY 117
Query: 113 DAAMGHWRVKTHEYEFM-CRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKN----- 166
W V E + CR+LI ATG +P I GI F+G H+S +
Sbjct: 118 VENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGA 177
Query: 167 --GVEFRASKVLVVGCGNSGMEI 187
GV+F +V V+G G +G++I
Sbjct: 178 PKGVDFTGKRVGVIGTGATGVQI 200
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 14/221 (6%)
Query: 1 MSSKAKRFWTPGPVIVGAGPSGLAAAACLK-ERGVPSLIIEKESCLASLWKLKIYDHLQL 59
M A+ T V++GAG G+ A L E G+ ++ +K W Y
Sbjct: 32 MHMTAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGA-- 89
Query: 60 HLPKQFCQLPYVPFPREY-------PAYPSGQQFITYMEAYANHFEIEPLL--GQEVQWA 110
L L F R+ Y + + + Y+E + F++ G EV A
Sbjct: 90 -LSDTESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSA 148
Query: 111 KYDAAMGHWRVKTHEYE-FMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVE 169
Y W V T E + ++++ A G P +PG+ F G +HT+ + G
Sbjct: 149 LYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKS 208
Query: 170 FRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILP 210
+V V+G G++G ++ L +++ VR + +P
Sbjct: 209 LAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVP 249
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 14/217 (6%)
Query: 5 AKRFWTPGPVIVGAGPSGLAAAACLK-ERGVPSLIIEKESCLASLWKLKIYDHLQLHLPK 63
A+ T V++GAG G+ A L E G+ ++ +K W Y L
Sbjct: 3 AQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGA---LSD 59
Query: 64 QFCQLPYVPFPREY-------PAYPSGQQFITYMEAYANHFEIEPLL--GQEVQWAKYDA 114
L F R+ Y + + + Y+E + F++ G EV A Y
Sbjct: 60 TESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLD 119
Query: 115 AMGHWRVKTHEYE-FMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRAS 173
W V T E + ++++ A G P +PG+ F G +HT+ + G
Sbjct: 120 DENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGR 179
Query: 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILP 210
+V V+G G++G ++ L +++ VR + +P
Sbjct: 180 RVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVP 216
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 30/196 (15%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
VI+G GP+GL AA + +LI+EK +P Q+ +
Sbjct: 12 VIIGGGPAGLTAAIYTGRAQLSTLILEK------------------GMPG--GQIAWSEE 51
Query: 74 PREYPAYP---SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGH---WRVKTHEYE 127
+P +P +G + M A F + + EVQ ++DA H + V+ + E
Sbjct: 52 VENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDAT-SHPYPFTVRGYNGE 109
Query: 128 FMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEI 187
+ + +I+ATG + P IPG F G+ + T +G ++ KV+V+G G++ +E
Sbjct: 110 YRAKAVILATGAD--PRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEE 167
Query: 188 SFDLCKNGAQVSLVVR 203
L K +V+++ R
Sbjct: 168 GMFLTKFADEVTVIHR 183
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 38/230 (16%)
Query: 1 MSSKAKRFWTPGPVIVGAGPSGLA---AAACLKERG--VPSLI-IEKESCLASLWKL--- 51
M S A R I+GAGPSG+A A +E+G +P L+ EK++ W
Sbjct: 3 MGSMATRI-----AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWR 57
Query: 52 ------------KIYDHLQLHLPKQFCQLPYVPFPREY----PAYPSGQQFITYMEAYAN 95
+Y +L + PK+ + F + +YP + Y++
Sbjct: 58 TGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVE 117
Query: 96 HFEIEPLL--GQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVPVLPK 147
+ + V+ +++ + V + Y +++ TG P +P+
Sbjct: 118 KAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPE 177
Query: 148 IPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ 197
G +F GR+LH +++ +EF+ VL+VG S +I K GA+
Sbjct: 178 FEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 33/217 (15%)
Query: 14 VIVGAGPSGLA---AAACLKERG--VPSLI-IEKESCLASLWKL---------------K 52
I+GAGPSG+A A +E+G +P L+ EK++ W
Sbjct: 6 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 53 IYDHLQLHLPKQFCQLPYVPFPREY----PAYPSGQQFITYMEAYANHFEIEPLL--GQE 106
+Y +L + PK+ + F + +YP + Y++ + +
Sbjct: 66 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 107 VQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLH 160
V+ +++ + V + Y +++ TG P +P+ G +F GR+LH
Sbjct: 126 VRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILH 185
Query: 161 TSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ 197
+++ +EF+ VL+VG +S +I K GA+
Sbjct: 186 AHDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKYGAK 222
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 38/230 (16%)
Query: 1 MSSKAKRFWTPGPVIVGAGPSGLA---AAACLKERG--VPSLI-IEKESCLASLWKL--- 51
M S A R I+GAGPSG+A A +E+G +P L+ EK++ W
Sbjct: 3 MGSMATRI-----AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWR 57
Query: 52 ------------KIYDHLQLHLPKQFCQLPYVPFPREY----PAYPSGQQFITYMEAYAN 95
+Y +L PK+ + F + +YP + Y++
Sbjct: 58 TGLDENGEPVHSSMYRYLWSDGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVE 117
Query: 96 HFEIEPLL--GQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVPVLPK 147
+ + V+ +++ + V + Y +++ TG P +P+
Sbjct: 118 KAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPE 177
Query: 148 IPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ 197
G +F GR+LH +++ +EF+ VL+VG S +I K GA+
Sbjct: 178 FEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 38/230 (16%)
Query: 1 MSSKAKRFWTPGPVIVGAGPSGLA---AAACLKERG--VPSLI-IEKESCLASLWKL--- 51
M S A R I+GAGPSG+A A +E+G +P L+ EK++ W
Sbjct: 3 MGSMATRI-----AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWR 57
Query: 52 ------------KIYDHLQLHLPKQFCQLPYVPFPREY----PAYPSGQQFITYMEAYAN 95
+Y +L PK+ + F + +YP + Y++
Sbjct: 58 TGLDENGEPVHSSMYRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVE 117
Query: 96 HFEIEPLL--GQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVPVLPK 147
+ + V+ +++ + V + Y +++ TG P +P+
Sbjct: 118 KAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPE 177
Query: 148 IPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ 197
G +F GR+LH +++ +EF+ VL+VG S +I K GA+
Sbjct: 178 FEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 38/230 (16%)
Query: 1 MSSKAKRFWTPGPVIVGAGPSGLA---AAACLKERG--VPSLI-IEKESCLASLWKL--- 51
M S A R I+GAGPSG+A A +E+G +P L+ EK++ W
Sbjct: 3 MGSMATRI-----AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWR 57
Query: 52 ------------KIYDHLQLHLPKQFCQLPYVPFPREY----PAYPSGQQFITYMEAYAN 95
+Y +L PK+ + F + +YP + Y++
Sbjct: 58 TGLDENGEPVHSSMYRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVE 117
Query: 96 HFEIEPLL--GQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVPVLPK 147
+ + V+ +++ + V + Y +++ TG P +P+
Sbjct: 118 KAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPE 177
Query: 148 IPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ 197
G +F GR+LH +++ +EF+ VL+VG S +I K GA+
Sbjct: 178 FEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 33/217 (15%)
Query: 14 VIVGAGPSGLA---AAACLKERG--VPSLI-IEKESCLASLWKL---------------K 52
I+GAGPSG+A A +E+G +P L+ EK++ W
Sbjct: 6 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 53 IYDHLQLHLPKQFCQLPYVPFPREY----PAYPSGQQFITYMEAYANHFEIEPLL--GQE 106
+Y +L + PK+ + F + +YP + Y++ + +
Sbjct: 66 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 107 VQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLH 160
V+ +++ + V + Y +++ TG P +P+ G +F GR+LH
Sbjct: 126 VRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILH 185
Query: 161 TSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ 197
+++ +EF+ VL+VG S +I K GA+
Sbjct: 186 AHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 222
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 33/217 (15%)
Query: 14 VIVGAGPSGLA---AAACLKERG--VPSLI-IEKESCLASLWKL---------------K 52
I+GAGPSG A A +E+G +P L+ EK++ W
Sbjct: 6 AILGAGPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 53 IYDHLQLHLPKQFCQLPYVPFPREY----PAYPSGQQFITYMEAYANHFEIEPLL--GQE 106
Y +L + PK+ + F + +YP + Y++ + +
Sbjct: 66 XYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 107 VQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLH 160
V+ +++ + V + Y +++ TG P +P+ G +F GR+LH
Sbjct: 126 VRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILH 185
Query: 161 TSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ 197
+++ +EF+ VL+VG S +I K GA+
Sbjct: 186 AHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 222
>pdb|3D1C|A Chain A, Crystal Structure Of Flavin-Containing Putative
Monooxygenase (Np_373108.1) From Staphylococcus Aureus
Mu50 At 2.40 A Resolution
Length = 369
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 82 SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENE 141
SG+ + Y++ ANH+E+ V D A ++ + T + ++ VATG+
Sbjct: 86 SGETYAEYLQVVANHYELNIFENTVVTNISADDA--YYTIATTTETYHADYIFVATGDYN 143
Query: 142 VPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSL 200
P P GI H S ++ F + +V+G SG + ++ L KNG+ ++L
Sbjct: 144 FPKKPFKYGI--------HYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIAL 194
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 78/194 (40%), Gaps = 30/194 (15%)
Query: 14 VIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVP 72
+I+G+GP+G AA + P LI E + QL
Sbjct: 9 LILGSGPAGYTAAVYAARANLQPVLITGME---------------------KGGQLTTTT 47
Query: 73 FPREYPAYP---SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFM 129
+P P +G + M +A FE E + K D +R+ E+
Sbjct: 48 EVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD---HINKVDLQNRPFRLNGDNGEYT 104
Query: 130 CRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISF 189
C LI+ATG + + +P F+GR + S +G +R KV V+G GN+ +E +
Sbjct: 105 CDALIIATGASARYL--GLPSEEAFKGRGVSASATCDGFFYRNQKVAVIGGGNTAVEEAL 162
Query: 190 DLCKNGAQVSLVVR 203
L ++V L+ R
Sbjct: 163 YLSNIASEVHLIHR 176
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 14 VIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVP 72
+I+G+GP+G AA + P LI E + QL
Sbjct: 9 LILGSGPAGYTAAVYAARANLQPVLITGME---------------------KGGQLTTTT 47
Query: 73 FPREYPAYP---SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFM 129
+P P +G + M +A FE E + K D +R+ E+
Sbjct: 48 EVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD---HINKVDLQNRPFRLNGDNGEYT 104
Query: 130 CRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISF 189
C LI+ATG + + +P F+GR + +G +R KV V+G GN+ +E +
Sbjct: 105 CDALIIATGASARYL--GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEAL 162
Query: 190 DLCKNGAQVSLVVR 203
L ++V L+ R
Sbjct: 163 YLSNIASEVHLIHR 176
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 14 VIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVP 72
+I+G+GP+G AA + P LI E + QL
Sbjct: 9 LILGSGPAGYTAAVYAARANLQPVLITGME---------------------KGGQLTTTT 47
Query: 73 FPREYPAYP---SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFM 129
+P P +G + M +A FE E + K D +R+ E+
Sbjct: 48 EVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD---HINKVDLQNRPFRLNGDNGEYT 104
Query: 130 CRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISF 189
C LI+ATG + + +P F+GR + +G +R KV V+G GN+ +E +
Sbjct: 105 CDALIIATGASARYL--GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEAL 162
Query: 190 DLCKNGAQVSLVVR 203
L ++V L+ R
Sbjct: 163 YLSNIASEVHLIHR 176
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 14 VIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVP 72
+I+G+GP+G AA + P LI E + QL
Sbjct: 9 LILGSGPAGYTAAVYAARANLQPVLITGME---------------------KGGQLTTTT 47
Query: 73 FPREYPAYP---SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFM 129
+P P +G + M +A FE E + K D +R+ E+
Sbjct: 48 EVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD---HINKVDLQNRPFRLNGDNGEYT 104
Query: 130 CRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISF 189
C LI+ATG + + +P F+GR + +G +R KV V+G GN+ +E +
Sbjct: 105 CDALIIATGASARYL--GLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEAL 162
Query: 190 DLCKNGAQVSLVVR 203
L ++V L+ R
Sbjct: 163 YLSNIASEVHLIHR 176
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 14 VIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVP 72
+I+G+GP+G AA + P LI E + QL
Sbjct: 9 LILGSGPAGYTAAVYAARANLQPVLITGME---------------------KGGQLTTTT 47
Query: 73 FPREYPAYP---SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFM 129
+P P +G + M +A FE E + K D +R+ E+
Sbjct: 48 EVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD---HINKVDLQNRPFRLNGDNGEYT 104
Query: 130 CRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISF 189
C LI+ATG + + +P F+GR + +G +R KV V+G GN+ +E +
Sbjct: 105 CDALIIATGASARYL--GLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEAL 162
Query: 190 DLCKNGAQVSLVVR 203
L ++V L+ R
Sbjct: 163 YLSNIASEVHLIHR 176
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 29/198 (14%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKE----SCLASLWKLK-IYDHLQLHLPKQFCQL 68
I+G GP+G+ AA + IIE LA+L+ K IYD
Sbjct: 18 TIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYD------------- 64
Query: 69 PYVPFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEV-QWAKYDAAMGHWRVKTHEYE 127
FP E PA + + A A + + +L + V ++ K D R T
Sbjct: 65 -VAGFP-EVPAI----DLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNV- 117
Query: 128 FMCRWLIVATGEN--EVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGM 185
+ R +++A G E LP++ I G ++ + K+ +F+ +V++VG G+S +
Sbjct: 118 YRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAV-KSVEDFKGKRVVIVGGGDSAL 176
Query: 186 EISFDLCKNGAQVSLVVR 203
+ + L KN A V+LV R
Sbjct: 177 DWTVGLIKNAASVTLVHR 194
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 29/197 (14%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLII----EKESCLASLWKLK-IYDHLQLHLPKQFCQL 68
+IVGAGP+GL A + RG+ + E L +L+ K IYD
Sbjct: 9 LIVGAGPTGLFAGFYVGXRGLSFRFVDPLPEPGGQLTALYPEKYIYD------------- 55
Query: 69 PYVPFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YE 127
FP+ Y + + + F LG+ + + + + ++V T +
Sbjct: 56 -VAGFPKVY-----AKDLVKGLVEQVAPFNPVYSLGERAETLEREGDL--FKVTTSQGNA 107
Query: 128 FMCRWLIVATGENEV-PVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGME 186
+ + +I+A G P PG EF GR ++ + K+ EF+ +VL+VG G+S ++
Sbjct: 108 YTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAV-KSKAEFQGKRVLIVGGGDSAVD 166
Query: 187 ISFDLCKNGAQVSLVVR 203
+ +L +++L+ R
Sbjct: 167 WALNLLDTARRITLIHR 183
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 70 YVPFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMG--HWRVKTHEYE 127
Y+ P+ GQ+ ++A+ + ++++ + Q A G H
Sbjct: 258 YISVPK-----TEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAV 312
Query: 128 FMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEI 187
R +I+ATG + +PG ++R + + + +G F+ +V V+G GNSG+E
Sbjct: 313 LKARSIIIATGAKWRNM--NVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEA 370
Query: 188 SFDLCKNGAQVSLV 201
+ DL V+L+
Sbjct: 371 AIDLAGIVEHVTLL 384
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 82/222 (36%), Gaps = 54/222 (24%)
Query: 15 IVGAGPSGLAAAACL------------KERGVPSLIIEKESCLAS--------------- 47
I+GAGPSGL A L + RG P + S L++
Sbjct: 13 IIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEP 72
Query: 48 --------LWKLKIYDHLQLHLPKQ---FCQLPYVPFPREYPAYPSGQQFITYMEAYANH 96
++ +Y LQ + P + +C + P ++P + Q+ Y YA
Sbjct: 73 IVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQE---YQRIYAQ- 128
Query: 97 FEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEF-------MCRWLIVATGENEVPVLPKIP 149
+ P + + G W V + + + + G EVP +P I
Sbjct: 129 -PLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIK 187
Query: 150 GISEFR----GRLLHTSTYKNGVEFRASKVLVVGCGNSGMEI 187
G+ E+ G +LH+S ++ F VLVVG +S ++
Sbjct: 188 GLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDL 229
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 82/222 (36%), Gaps = 54/222 (24%)
Query: 15 IVGAGPSGLAAAACL------------KERGVPSLIIEKESCLAS--------------- 47
I+GAGPSGL A L + RG P + S L++
Sbjct: 11 IIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEP 70
Query: 48 --------LWKLKIYDHLQLHLPKQ---FCQLPYVPFPREYPAYPSGQQFITYMEAYANH 96
++ +Y LQ + P + +C + P ++P + Q+ Y YA
Sbjct: 71 IVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQE---YQRIYAQ- 126
Query: 97 FEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEF-------MCRWLIVATGENEVPVLPKIP 149
+ P + + G W V + + + + G EVP +P I
Sbjct: 127 -PLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIK 185
Query: 150 GISEFR----GRLLHTSTYKNGVEFRASKVLVVGCGNSGMEI 187
G+ E+ G +LH+S ++ F VLVVG +S ++
Sbjct: 186 GLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDL 227
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 70 YVPFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMG--HWRVKTHEYE 127
Y+ P+ GQ+ ++ + + ++++ + Q A G H
Sbjct: 47 YISVPK-----TEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAV 101
Query: 128 FMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEI 187
R +IVATG + +PG ++R + + + +G F+ +V V+G GNSG+E
Sbjct: 102 LKARSIIVATGAKWRNM--NVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEA 159
Query: 188 SFDLCKNGAQVSLV 201
+ DL V+L+
Sbjct: 160 AIDLAGIVEHVTLL 173
>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
pdb|2A87|B Chain B, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
Length = 335
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 92/246 (37%), Gaps = 40/246 (16%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
+++G+GP+G AA + L+ E S +L ++
Sbjct: 18 IVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVEN----------------- 60
Query: 74 PREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT----HEYEFM 129
YP + +G IT E E G +++ ++ H +K+
Sbjct: 61 ---YPGFRNG---ITGPELMDEMREQALRFGADLRMEDVESVSLHGPLKSVVTADGQTHR 114
Query: 130 CRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISF 189
R +I+A G + ++PG E GR + + +G FR + V+G G+S ME +
Sbjct: 115 ARAVILAMGAAARYL--QVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEAT 172
Query: 190 DLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDT 249
L + V+LV R K +L R+ + L V VD GDT
Sbjct: 173 FLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVD-----------GDT 221
Query: 250 KQIGIQ 255
G++
Sbjct: 222 TVTGLR 227
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 35/154 (22%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
++VG GPSGL+AA L G+ L+++ + K+ K ++P
Sbjct: 5 IVVGGGPSGLSAALFLARAGLKVLVLDG-------GRSKV---------KGVSRVP---- 44
Query: 74 PREYPAY---PSGQQFITYMEAYANHF--EIEPLLGQEVQWAKYDAAMGHWRVKTHEYEF 128
YP PSG++ + +EA+A + E+ P + + V+ G + V+T E
Sbjct: 45 --NYPGLLDEPSGEELLRRLEAHARRYGAEVRPGVVKGVRDXG-----GVFEVETEEGVE 97
Query: 129 MCRWLIVATGENEVPVLPKIPGISEFRGRLLHTS 162
L++ T ++ P LP + G++ RG + T
Sbjct: 98 KAERLLLCTHKD--PTLPSLLGLTR-RGAYIDTD 128
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 127 EFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGME 186
E + +I+ATG + +PG E GR + +G F+ ++ V+G G+S +E
Sbjct: 102 ELTAKAVIIATGAEYKKI--GVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVE 159
Query: 187 ISFDLCKNGAQVSLVVRDKVHILPKKILGRSSF 219
L K +V++V R + + ++IL +F
Sbjct: 160 EGTFLTKFADKVTIVHR-RDELRAQRILQDRAF 191
>pdb|3S5W|A Chain A, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S5W|B Chain B, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S61|A Chain A, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
pdb|3S61|B Chain B, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
Length = 463
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 144/375 (38%), Gaps = 85/375 (22%)
Query: 16 VGAGPSGLAAAACLKER-----GVPSLIIEKE-------SCLASLWKLKIY---DHLQLH 60
VG GPS +A A L+ER + L ++K+ + L S +L+I D + L
Sbjct: 36 VGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLR 95
Query: 61 LPKQFCQLPY------------VPFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQ 108
P PY V F YP +F Y+ A+HF+ + G+EV
Sbjct: 96 NPTS----PYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVL 151
Query: 109 WAKYDAAMGH---WRVKT-----HEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLH 160
+ + G RV + E R L+V+ G P +P++ + GR+ H
Sbjct: 152 RIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT--PRIPQVFRALKGDGRVFH 209
Query: 161 TSTYKNGV------EFRASKVLVVGCGNSGMEISFDLCKN--GAQVSLVVRDKVHILPKK 212
S Y + + K+ ++G G S E DL + Q +++R K
Sbjct: 210 HSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA----LK 265
Query: 213 ILGRSSFAISVWLLKWFPVDVV--------DRFL--LFCSRLVLGDTKQIGIQRPKMGPL 262
S F V+ K+ D++ +R L + + DT I ++ +
Sbjct: 266 PADDSPFVNEVFAPKF--TDLIYSREHAERERLLREYHNTNYSVVDTDLI----ERIYGV 319
Query: 263 QWKNSVGKTPVLDDGAFAKIKSGEIKVVPGIQKFTAKGAEFVNR-------TVKEFDSII 315
++ V P AF + + E TA+G E R +V+ +D++I
Sbjct: 320 FYRQKVSGIP---RHAFRCMTTVERATA------TAQGIELALRDAGSGELSVETYDAVI 370
Query: 316 LATGYRSNVSSWLKE 330
LATGY + L E
Sbjct: 371 LATGYERQLHRQLLE 385
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 31/211 (14%)
Query: 7 RFWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFC 66
R+ + VI+G +G++AA + ++ + + +L K +IY + Q C
Sbjct: 33 RWGSMNYVIIGGDAAGMSAAMQIVRN-------DENANVVTLEKGEIYSYAQ-------C 78
Query: 67 QLPYVPFPREYPAYPSGQQFITY-MEAYANHFEIEPLLGQEVQWAKYDAAMGHWR-VKTH 124
LPYV A S ++ I ++ + + + I+ + EV + + + KT
Sbjct: 79 GLPYVISG----AIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTK 134
Query: 125 E-YEFMCRWLIVATGENEVPVLPKIPGISEFRG-RLLHT-----STYKNGVEFRASKVLV 177
+ +EF L++ATG PV+P+ G + +G LL T K + V +
Sbjct: 135 DVFEFSYDRLLIATGVR--PVMPEWEG-RDLQGVHLLKTIPDAERILKTLETNKVEDVTI 191
Query: 178 VGCGNSGMEISFDLCKNGAQVSLVVRDKVHI 208
+G G G+E++ + G +V ++ R+ HI
Sbjct: 192 IGGGAIGLEMAETFVELGKKVRMIERND-HI 221
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 94 ANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISE 153
AN+ +I G EV+ K G + ++T++ + +++I+ TG + + G SE
Sbjct: 83 ANYAKIRE--GVEVRSIK--KTQGGFDIETNDDTYHAKYVIITTGTTHKHL--GVKGESE 136
Query: 154 FRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLV 201
+ G+ + +G F+ +V+ +G GNSG + + + V+++
Sbjct: 137 YFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTII 184
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
IVGAGPSGLAAA L++ G+ +IE
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIE 35
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
IVGAGPSGLAAA L++ G+ +IE
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIE 35
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
IVGAGPSGLAAA L++ G+ +IE
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIE 35
>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2
pdb|2WHD|B Chain B, Barley Nadph-Dependent Thioredoxin Reductase 2
Length = 351
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 10/156 (6%)
Query: 67 QLPYVPFPREYPAYPSGQQFITYME---AYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT 123
QL +P +P+G I M+ A + F +L + V + A +RV +
Sbjct: 72 QLTTTTDVENFPGFPTGIMGIDLMDNCRAQSVRFGTN-ILSETVTEVDFSAR--PFRVTS 128
Query: 124 HEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVE--FRASKVLVVGCG 181
+ ++VATG V G + R + +G FR + V+G G
Sbjct: 129 DSTTVLADTVVVATGA--VARRLYFSGSDTYWNRGISACAVCDGAAPIFRNKPIAVIGGG 186
Query: 182 NSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRS 217
+S ME L K G+QV ++ R K + R+
Sbjct: 187 DSAMEEGNFLTKYGSQVYIIHRRNTFRASKIMQARA 222
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 35/197 (17%)
Query: 33 GVPSLIIEKES---------CLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSG 83
G+P++++E ++ C+ S K I+ Q H +F + + P G
Sbjct: 28 GIPTVLVEGQALGGTCLNIGCIPS--KALIHVAEQFHQASRFTEPSPLGISVASPRLDIG 85
Query: 84 Q----------QFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWL 133
Q + T + A ++ + G WAK + +V+ C L
Sbjct: 86 QSVAWKDGIVDRLTTGVAALLKKHGVKVVHG----WAKV---LDGKQVEVDGQRIQCEHL 138
Query: 134 IVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCK 193
++ATG + V LP +P G + +ST + ++VVG G G+E+ K
Sbjct: 139 LLATGSSSVE-LPMLP-----LGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRK 192
Query: 194 NGAQVSLVVRDKVHILP 210
GAQVS VV + ILP
Sbjct: 193 LGAQVS-VVEARERILP 208
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
VIVGAGPSGL AA LK+ G+ ++E
Sbjct: 11 VIVGAGPSGLTAARELKKAGLSVAVLE 37
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCL-------ASLWKLKIYDHLQLHLPKQFC 66
++VGAGPSGL AA L RG ++ E L ++L L + ++ +
Sbjct: 395 LVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLA 454
Query: 67 QLPYVPFPREYP 78
+LP V RE P
Sbjct: 455 ELPNVEIYRESP 466
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 80 YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGE 139
Y +G++ + ++ EI + +E Q D G RV+ ++ LI++ G
Sbjct: 60 YMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDK------LIISPGA 113
Query: 140 NEVPVLPKIPG-----ISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKN 194
VP IPG I RGR + V+ + V+V+G G G+E + K
Sbjct: 114 --VPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKA 171
Query: 195 GAQVSLV 201
G +V+++
Sbjct: 172 GKKVTVI 178
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 80 YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGE 139
Y +G++ + ++ EI + +E Q D G RV+ ++ LI++ G
Sbjct: 60 YMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDK------LIISPGA 113
Query: 140 NEVPVLPKIPG-----ISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKN 194
VP IPG I RGR + V+ + V+V+G G G+E + K
Sbjct: 114 --VPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKA 171
Query: 195 GAQVSLV 201
G +V+++
Sbjct: 172 GKKVTVI 178
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 80 YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGE 139
Y +G++ + ++ EI + +E Q D G RV+ ++ LI++ G
Sbjct: 60 YMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDK------LIISPGA 113
Query: 140 NEVPVLPKIPG-----ISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKN 194
VP IPG I RGR + V+ + V+V+G G G+E + K
Sbjct: 114 --VPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKA 171
Query: 195 GAQVSLV 201
G +V+++
Sbjct: 172 GKKVTVI 178
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 80 YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGE 139
Y +G++ + ++ EI + +E Q D G RV+ ++ LI++ G
Sbjct: 60 YMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDK------LIISPGA 113
Query: 140 NEVPVLPKIPG-----ISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKN 194
VP IPG I RGR + V+ + V+V+G G G+E + K
Sbjct: 114 --VPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKA 171
Query: 195 GAQVSLV 201
G +V+++
Sbjct: 172 GKKVTVI 178
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 80 YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGE 139
Y +G++ + ++ EI + +E Q D G RV+ ++ LI++ G
Sbjct: 60 YMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDK------LIISPGA 113
Query: 140 NEVPVLPKIPG-----ISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKN 194
VP IPG I RGR + V+ + V+V+G G G+E + K
Sbjct: 114 --VPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKA 171
Query: 195 GAQVSLV 201
G +V+++
Sbjct: 172 GKKVTVI 178
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 80 YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGE 139
Y +G++ + ++ EI + +E Q D G RV+ ++ LI++ G
Sbjct: 60 YMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDK------LIISPGA 113
Query: 140 NEVPVLPKIPG-----ISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKN 194
VP IPG I RGR + V+ + V+V+G G G+E + K
Sbjct: 114 --VPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKA 171
Query: 195 GAQVSLV 201
G +V+++
Sbjct: 172 GKKVTVI 178
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 10 TPGPVIVGAGPSGLAAAACLKERG 33
TP VI+GAGP+GL AA L E G
Sbjct: 9 TPKIVIIGAGPTGLGAAVRLTELG 32
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 10 TPGP--VIVGAGPSGLAAAACLKERGVPSLII 39
T GP ++VGAG SG++AA L E G+ L+I
Sbjct: 2 TVGPRVIVVGAGMSGISAAKRLSEAGITDLLI 33
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 10 TPGP--VIVGAGPSGLAAAACLKERGVPSLII 39
T GP ++VGAG SG++AA L E G+ L+I
Sbjct: 2 TVGPRVIVVGAGMSGISAAKRLSEAGITDLLI 33
>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase
pdb|3M6I|B Chain B, L-Arabinitol 4-Dehydrogenase
Length = 363
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 23/131 (17%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPF 73
+I GAGP GL C K G L+I D +L K+ C
Sbjct: 184 LICGAGPIGLITMLCAKAAGACPLVITD------------IDEGRLKFAKEICPEVVTHK 231
Query: 74 PREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWL 133
A S ++ + E++ IEP + E + A W VK F +
Sbjct: 232 VERLSAEESAKKIV---ESFGG---IEPAVALECTGVESSIAAAIWAVK-----FGGKVF 280
Query: 134 IVATGENEVPV 144
++ G+NE+ +
Sbjct: 281 VIGVGKNEIQI 291
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 23/130 (17%)
Query: 93 YANHFEIEPL-----LGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPK 147
Y++ E+E L + VQ YDA V + LI ATG P+LP
Sbjct: 96 YSDKEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQ--PILPP 153
Query: 148 IPGISEFRGRLLHTST---------YKNGVEFRAS-------KVLVVGCGNSGMEISFDL 191
I G G L +T Y+N + A +V VVG G G+E++
Sbjct: 154 IKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAF 213
Query: 192 CKNGAQVSLV 201
+ G +V L+
Sbjct: 214 QRKGKEVVLI 223
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 23/130 (17%)
Query: 93 YANHFEIEPL-----LGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPK 147
Y++ E+E L + VQ YDA V + LI ATG P+LP
Sbjct: 96 YSDKEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQ--PILPP 153
Query: 148 IPGISEFRGRLLHTST---------YKNGVEFRAS-------KVLVVGCGNSGMEISFDL 191
I G G L +T Y+N + A +V VVG G G+E++
Sbjct: 154 IKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAF 213
Query: 192 CKNGAQVSLV 201
+ G +V L+
Sbjct: 214 QRKGKEVVLI 223
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 94/251 (37%), Gaps = 68/251 (27%)
Query: 117 GHWR-VKTHEYEFMCRWL-----IVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEF 170
GH R V H E + L ++ATG P++P++PG L TS ++
Sbjct: 112 GHARFVDAHTIEVEGQRLSADHIVIATGGR--PIVPRLPG-----AELGITSDGFFALQQ 164
Query: 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFP 230
+ +V ++G G G+E++ L G++V++V L ++L + +S L +
Sbjct: 165 QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVA------LEDRLLFQFDPLLSATLAENMH 218
Query: 231 VDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVV 290
++ L F + +++ G T V DG
Sbjct: 219 AQGIETHLEFAVAAL------------------ERDAQGTTLVAQDGT------------ 248
Query: 291 PGIQKFTAKGAEFVNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKN 349
++ FDS+I A G N L+ A + Q N P D+Y
Sbjct: 249 ----------------RLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNT 292
Query: 350 WKGKNGVYSVG 360
GVY++G
Sbjct: 293 --NVPGVYALG 301
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVR 203
SK+L+ GCG+ G+E++ L G +V+ + R
Sbjct: 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRR 34
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
IVGAG SGLAAA L++ G+ +IE
Sbjct: 9 AIVGAGISGLAAATALRKAGLSVAVIE 35
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK 52
I+GAGPSGL L + G+ ++I+E+++ L ++K
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIK 44
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK 52
I+GAGPSGL L + G+ ++I+E+++ L K++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGKIR 44
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
V++G G SGL+AA L E GV L++E
Sbjct: 6 VVIGGGISGLSAAKLLTEYGVSVLVLE 32
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
V++G G SGL+AA L E GV L++E
Sbjct: 6 VVIGGGISGLSAAKLLTEYGVSVLVLE 32
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
V++G G SGL+AA L E GV L++E
Sbjct: 17 VVIGGGISGLSAAKLLTEYGVSVLVLE 43
>pdb|3NLC|A Chain A, Crystal Structure Of The Vp0956 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr147
Length = 549
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 3 SKAKRFWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEK 41
+KA T P+++G GP GL A L + G +I+E+
Sbjct: 100 AKAPENLTERPIVIGFGPCGLFAGLVLAQXGFNPIIVER 138
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK 52
I+GAGPSGL L + G+ ++I+E+++ L +++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQTPDEVLGRIR 44
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 128 FMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEI 187
F + +I+ATG + P I G SE+ G+ + T +G ++ +V V+G G++ +E
Sbjct: 101 FEAKSVIIATGGS--PKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEE 158
Query: 188 SFDLCKNGAQVSLVVR 203
+ L +V L+ R
Sbjct: 159 AIYLANICKKVYLIHR 174
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+++
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 86 FITYMEAYANHFEIE-PLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVP 143
+ +E + F ++ +L + V+ K + + V T+E Y LI++ G P
Sbjct: 95 LVQTVERXSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAK--P 152
Query: 144 VLPKIPGISEFRG-----RLLHTSTYKNGV-EFRASKVLVVGCGNSGMEISFDLCKNGAQ 197
++P IPGI E + + T K + E + V+G G G+E +L + G +
Sbjct: 153 IVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEXVENLRERGIE 212
Query: 198 VSLV 201
V+LV
Sbjct: 213 VTLV 216
>pdb|2CUL|A Chain A, Crystal Structure Of The Gida-Related Protein From Thermus
Thermophilus Hb8
Length = 232
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRD 204
A +VL+VG G SG E +F L + G +V L+ +
Sbjct: 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS 35
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEK 41
+IVGAGP G+ AA L E G L++E+
Sbjct: 6 IIVGAGPGGIIAADRLSEAGKKVLLLER 33
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEK 41
+IVGAGP G+ AA L E G L++E+
Sbjct: 11 IIVGAGPGGIIAADRLSEAGKKVLLLER 38
>pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
pdb|3ULK|B Chain B, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
Length = 491
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 155 RGRLLHTSTYKNGVEF-RASKVLVVGCGNSGMEISFDLCKNGAQVSLVVR 203
+ R + + +G + + KV++VGCG G+ ++ +G +S +R
Sbjct: 19 KXRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALR 68
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+ +
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERRT 35
>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|B Chain B, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|C Chain C, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|D Chain D, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
Length = 404
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKES 43
VI+G GP GLAA A LK G +I+ + S
Sbjct: 218 VILGGGPIGLAAVAILKHAGASKVILSEPS 247
>pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|B Chain B, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|C Chain C, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|D Chain D, Escherichia Coli Ketol-Acid Reductoisomerase
Length = 491
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 157 RLLHTSTYKNGVEF-RASKVLVVGCGNSGMEISFDLCKNGAQVSLVVR 203
R + + +G + + KV++VGCG G+ ++ +G +S +R
Sbjct: 21 RFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALR 68
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 14 VIVGAGPSGLAAAACLKE--RGVPSL---IIEKESC 44
+IVGAGP+GL AA L E R P L II+K S
Sbjct: 11 LIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 14 VIVGAGPSGLAAAACLKE--RGVPSL---IIEKESC 44
+IVGAGP+GL AA L E R P L II+K S
Sbjct: 12 LIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 47
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 15 IVGAGPSGLAAAACLKERGVPSLIIEKES 43
I+GAGPSGL L + G+ ++I+E+ +
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERTT 35
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEK-----ESCLASLWKLKIYDHLQLHLPK---QF 65
++VGAGP GL AA L G +++EK + LW I+D L K +F
Sbjct: 96 LVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRF 155
Query: 66 C 66
C
Sbjct: 156 C 156
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 164 YKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLV 201
Y+ G +K LVVG G G+ + +L GA+V LV
Sbjct: 84 YQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLV 121
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 120 RVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVG 179
++K+ E + ++A G P P IPG E+ TS ++ K LVVG
Sbjct: 141 KLKSGERTITAQTFVIAVGGR--PRYPDIPGAVEYG----ITSDDLFSLDREPGKTLVVG 194
Query: 180 CGNSGMEISFDLCKNGAQVSLVVRDKV 206
G G+E + L G + +++VR V
Sbjct: 195 AGYIGLECAGFLKGLGYEPTVMVRSIV 221
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 162 STYKNGVEFRASKVLVVGCGNSGMEISFDLCKNG-AQVSL 200
+ +K+G E + LV+GCG G I++ L + G A ++L
Sbjct: 115 AAHKHGFEPAGKRALVIGCGGVGSAIAYALAEAGIASITL 154
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 120 RVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVG 179
++K+ E + ++A G P P IPG E+ TS ++ K LVVG
Sbjct: 137 KLKSGERTITAQTFVIAVGGR--PRYPDIPGAVEYG----ITSDDLFSLDREPGKTLVVG 190
Query: 180 CGNSGMEISFDLCKNGAQVSLVVRDKV 206
G G+E + L G + +++VR V
Sbjct: 191 AGYIGLECAGFLKGLGYEPTVMVRSIV 217
>pdb|3FPZ|A Chain A, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
pdb|3FPZ|B Chain B, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
Length = 326
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 157 RLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKN 194
R + + +K+ +F S V++VG G+SG+ ++ + KN
Sbjct: 50 RAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKN 87
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 120 RVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVG 179
++K+ E + ++A G P P IPG E+ TS ++ K LVVG
Sbjct: 141 KLKSGERTITAQTFVIAVGGR--PRYPDIPGAVEYG----ITSDDLFSLDREPGKTLVVG 194
Query: 180 CGNSGMEISFDLCKNGAQVSLVVRDKV 206
G G+E + L G + +++VR V
Sbjct: 195 AGYIGLECAGFLKGLGYEPTVMVRSIV 221
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEK-----ESCLASLWKLKIYD 55
++VGAGP GL AA L G +++EK + LW I+D
Sbjct: 88 LVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHD 134
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 164 YKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLV 201
Y+ G +K LVVG G G+ + +L GA+V LV
Sbjct: 76 YQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLV 113
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEKE 42
+++GAGP+G AA+ + + G I+EK+
Sbjct: 9 LVIGAGPAGTVAASLVNKSGFKVKIVEKQ 37
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 148 IPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVR 203
+PG EF GR + + + F+ V V+G G+S +E + L +V L+ R
Sbjct: 130 VPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHR 185
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEK 41
++GAG GLA A L+ G+P L++E+
Sbjct: 5 TVIGAGFGGLALAIRLQAAGIPVLLLEQ 32
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
++VGAG G+AA L ++GV +L+++
Sbjct: 7 IVVGAGSMGMAAGYYLAKQGVKTLLVD 33
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 14 VIVGAGPSGLAAAACLKE 31
VIVGAGP+GL+AA LK+
Sbjct: 39 VIVGAGPAGLSAATRLKQ 56
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
++VGAG G+AA L ++GV +L+++
Sbjct: 8 IVVGAGSMGMAAGYQLAKQGVKTLLVD 34
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLV-VRDKV 206
++ K+L+VG G SG I L + G QV ++ RD +
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
++VGAG G+AA L ++GV +L+++
Sbjct: 7 IVVGAGSMGMAAGYQLAKQGVKTLLVD 33
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
Length = 389
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
++VGAG G+AA L ++GV +L+++
Sbjct: 7 IVVGAGSMGMAAGYQLAKQGVKTLLVD 33
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
Length = 389
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
++VGAG G+AA L ++GV +L+++
Sbjct: 7 IVVGAGSMGMAAGYQLAKQGVKTLLVD 33
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae With
Reduced Fad
Length = 384
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLV-VRDKV 206
++ K+L+VG G SG I L + G QV ++ RD +
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
++VGAG G+AA L ++GV +L+++
Sbjct: 7 IVVGAGSMGMAAGYQLAKQGVKTLLVD 33
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A
Resolution
Length = 499
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIEK 41
++VGAGP+GL A L+ GV +++E+
Sbjct: 16 IVVGAGPAGLMLAGELRLGGVDVMVLEQ 43
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLV-VRDKV 206
++ K+L+VG G SG I L + G QV ++ RD +
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 14 VIVGAGPSGLAAAACLKERGVPSLIIE 40
V++G G SGLAAA L E + L++E
Sbjct: 25 VVIGGGISGLAAAKLLSEYKINVLVLE 51
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 166 NGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVV--RDKV 206
N V KV+++G G +G++ + L +NG Q LV+ RD+V
Sbjct: 2 NTVSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 166 NGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVV--RDKV 206
N V KV+++G G +G++ + L +NG Q LV+ RD+V
Sbjct: 2 NTVSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 166 NGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVV--RDKV 206
N V KV+++G G +G++ + L +NG Q LV+ RD+V
Sbjct: 2 NTVSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 166 NGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVV--RDKV 206
N V KV+++G G +G++ + L +NG Q LV+ RD+V
Sbjct: 2 NTVSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 166 NGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVV--RDKV 206
N V KV+++G G +G++ + L +NG Q LV+ RD+V
Sbjct: 2 NTVSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 3 SKAKRFWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKE 42
S AKR ++GAG SGLAAA LK G+ + E E
Sbjct: 11 SSAKRV-----AVIGAGVSGLAAAYKLKIHGLNVTVFEAE 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,903,435
Number of Sequences: 62578
Number of extensions: 552857
Number of successful extensions: 1802
Number of sequences better than 100.0: 172
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 273
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)