Query 039923
Match_columns 395
No_of_seqs 162 out of 2196
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:23:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 2.3E-46 5E-51 355.9 21.9 363 11-385 2-397 (531)
2 PLN02172 flavin-containing mon 100.0 2.8E-40 6.1E-45 310.7 30.6 312 1-384 1-352 (461)
3 COG2072 TrkA Predicted flavopr 100.0 1.2E-36 2.6E-41 285.1 33.9 353 8-367 6-391 (443)
4 TIGR01292 TRX_reduct thioredox 100.0 6.3E-37 1.4E-41 277.3 27.1 283 11-384 1-300 (300)
5 COG0492 TrxB Thioredoxin reduc 100.0 1E-36 2.3E-41 269.2 27.3 287 9-387 2-303 (305)
6 PRK10262 thioredoxin reductase 100.0 3.6E-36 7.9E-41 273.9 27.4 294 8-388 4-318 (321)
7 COG1249 Lpd Pyruvate/2-oxoglut 100.0 4.6E-36 1E-40 277.8 25.2 303 9-382 3-334 (454)
8 PRK15317 alkyl hydroperoxide r 100.0 3.9E-35 8.5E-40 282.5 28.3 289 8-388 209-515 (517)
9 TIGR03140 AhpF alkyl hydropero 100.0 4.1E-35 8.9E-40 281.9 27.5 287 8-386 210-514 (515)
10 TIGR01421 gluta_reduc_1 glutat 100.0 7.7E-35 1.7E-39 275.7 23.8 297 10-382 2-327 (450)
11 TIGR01424 gluta_reduc_2 glutat 100.0 6.9E-35 1.5E-39 276.4 22.4 300 10-383 2-326 (446)
12 COG1252 Ndh NADH dehydrogenase 100.0 3.6E-35 7.8E-40 264.9 19.3 290 9-389 2-336 (405)
13 TIGR03143 AhpF_homolog putativ 100.0 3.2E-34 7E-39 277.6 26.5 289 10-389 4-313 (555)
14 PLN02507 glutathione reductase 100.0 1.4E-34 3E-39 276.4 23.4 303 8-383 23-363 (499)
15 PRK06116 glutathione reductase 100.0 1.3E-34 2.9E-39 275.3 22.6 298 10-383 4-328 (450)
16 PTZ00318 NADH dehydrogenase-li 100.0 2.2E-34 4.8E-39 271.0 21.7 294 1-387 1-350 (424)
17 PRK13512 coenzyme A disulfide 100.0 3E-34 6.5E-39 271.2 22.7 282 11-383 2-312 (438)
18 PRK05249 soluble pyridine nucl 100.0 4.8E-34 1E-38 272.7 24.0 303 10-383 5-335 (461)
19 PRK06370 mercuric reductase; V 100.0 3.2E-34 6.9E-39 273.5 22.7 300 10-383 5-334 (463)
20 PRK04965 NADH:flavorubredoxin 100.0 4.7E-34 1E-38 265.6 23.0 281 10-384 2-303 (377)
21 KOG1399 Flavin-containing mono 100.0 8.4E-34 1.8E-38 261.5 23.8 303 8-384 4-333 (448)
22 PRK08010 pyridine nucleotide-d 100.0 5.1E-34 1.1E-38 270.7 22.2 296 10-383 3-317 (441)
23 PLN02546 glutathione reductase 100.0 2.8E-34 6.1E-39 275.3 19.0 300 9-383 78-413 (558)
24 PRK14989 nitrite reductase sub 100.0 7.3E-34 1.6E-38 283.9 21.0 282 11-383 4-310 (847)
25 PRK06416 dihydrolipoamide dehy 100.0 3.2E-33 6.9E-38 267.0 23.5 301 9-383 3-334 (462)
26 PRK09564 coenzyme A disulfide 100.0 3.1E-33 6.8E-38 266.1 23.2 285 12-383 2-317 (444)
27 TIGR02053 MerA mercuric reduct 100.0 2.5E-33 5.3E-38 267.6 20.7 299 11-383 1-329 (463)
28 PRK14694 putative mercuric red 100.0 1.6E-32 3.5E-37 261.8 26.3 294 10-383 6-335 (468)
29 PRK14727 putative mercuric red 100.0 1.2E-32 2.6E-37 263.0 25.3 302 8-383 14-346 (479)
30 PRK13748 putative mercuric red 100.0 9.5E-33 2.1E-37 270.0 25.2 300 10-383 98-428 (561)
31 PRK12831 putative oxidoreducta 100.0 3.9E-33 8.4E-38 264.1 21.3 295 8-386 138-462 (464)
32 TIGR01423 trypano_reduc trypan 100.0 8.9E-33 1.9E-37 262.3 23.8 301 10-383 3-351 (486)
33 TIGR01316 gltA glutamate synth 100.0 8.1E-33 1.8E-37 261.6 22.1 273 9-384 132-449 (449)
34 PRK06467 dihydrolipoamide dehy 100.0 2E-32 4.4E-37 260.7 23.7 300 10-383 4-337 (471)
35 PRK06292 dihydrolipoamide dehy 100.0 2.3E-32 5E-37 261.0 24.0 303 10-383 3-331 (460)
36 PRK07845 flavoprotein disulfid 100.0 1E-31 2.2E-36 255.7 27.4 306 10-383 1-337 (466)
37 PRK11749 dihydropyrimidine deh 100.0 1.4E-32 2.9E-37 261.5 21.1 279 8-388 138-455 (457)
38 PRK07251 pyridine nucleotide-d 100.0 5.8E-32 1.3E-36 256.4 25.0 295 10-383 3-316 (438)
39 PRK06115 dihydrolipoamide dehy 100.0 3.4E-32 7.3E-37 259.0 22.9 302 10-383 3-338 (466)
40 PTZ00052 thioredoxin reductase 100.0 2.6E-32 5.6E-37 261.1 21.7 302 10-383 5-341 (499)
41 PRK07846 mycothione reductase; 100.0 6.4E-32 1.4E-36 255.6 23.8 295 11-383 2-325 (451)
42 PRK07818 dihydrolipoamide dehy 100.0 1.2E-31 2.6E-36 255.9 25.6 303 10-383 4-336 (466)
43 PTZ00058 glutathione reductase 100.0 1.7E-31 3.7E-36 256.0 26.1 304 9-383 47-432 (561)
44 PRK09754 phenylpropionate diox 100.0 2.8E-32 6.1E-37 255.0 20.3 282 11-384 4-310 (396)
45 TIGR02374 nitri_red_nirB nitri 100.0 2.1E-32 4.5E-37 274.0 19.8 279 13-383 1-301 (785)
46 KOG0404 Thioredoxin reductase 100.0 4.6E-32 9.9E-37 217.5 17.8 293 9-385 7-319 (322)
47 PRK12779 putative bifunctional 100.0 1.1E-31 2.4E-36 270.7 24.0 292 9-385 305-627 (944)
48 TIGR01350 lipoamide_DH dihydro 100.0 4.6E-31 9.9E-36 252.4 27.0 302 10-384 1-333 (461)
49 PRK06327 dihydrolipoamide dehy 100.0 1.4E-31 3.1E-36 255.6 23.5 305 10-383 4-347 (475)
50 PRK09853 putative selenate red 100.0 1.1E-31 2.4E-36 266.5 23.1 288 9-385 538-842 (1019)
51 TIGR01438 TGR thioredoxin and 100.0 3.8E-31 8.3E-36 251.8 23.8 301 10-383 2-344 (484)
52 TIGR03169 Nterm_to_SelD pyridi 100.0 1.6E-31 3.4E-36 248.0 20.5 282 12-389 1-315 (364)
53 PRK05976 dihydrolipoamide dehy 100.0 4.9E-31 1.1E-35 252.1 24.2 305 10-383 4-343 (472)
54 PTZ00153 lipoamide dehydrogena 100.0 6.4E-31 1.4E-35 255.1 23.7 308 10-383 116-495 (659)
55 PRK12770 putative glutamate sy 100.0 1.2E-30 2.5E-35 240.3 24.1 286 8-386 16-351 (352)
56 PRK12778 putative bifunctional 100.0 4.5E-31 9.7E-36 264.8 22.3 292 9-386 430-751 (752)
57 PRK06912 acoL dihydrolipoamide 100.0 1.8E-30 3.9E-35 247.1 21.6 298 12-383 2-330 (458)
58 PRK12814 putative NADPH-depend 100.0 1.6E-30 3.5E-35 255.7 21.5 295 9-388 192-504 (652)
59 TIGR03452 mycothione_red mycot 100.0 2.4E-30 5.3E-35 245.2 21.6 296 10-383 2-328 (452)
60 PRK12810 gltD glutamate syntha 100.0 2.2E-30 4.7E-35 246.8 20.9 288 9-388 142-468 (471)
61 TIGR03315 Se_ygfK putative sel 100.0 2.4E-30 5.2E-35 258.3 21.9 287 9-384 536-839 (1012)
62 KOG0405 Pyridine nucleotide-di 100.0 4.8E-30 1E-34 219.0 20.1 303 9-384 19-351 (478)
63 PRK12775 putative trifunctiona 100.0 2.2E-29 4.8E-34 256.3 23.6 295 9-388 429-758 (1006)
64 PF13738 Pyr_redox_3: Pyridine 100.0 3.7E-30 8E-35 219.2 14.6 189 14-207 1-202 (203)
65 PRK12769 putative oxidoreducta 100.0 2.4E-29 5.2E-34 248.6 22.3 294 9-386 326-653 (654)
66 TIGR01318 gltD_gamma_fam gluta 100.0 2.6E-29 5.7E-34 238.4 21.3 292 9-385 140-466 (467)
67 PRK12809 putative oxidoreducta 100.0 4.9E-28 1.1E-32 238.2 23.0 295 9-387 309-637 (639)
68 TIGR01317 GOGAT_sm_gam glutama 100.0 2.5E-27 5.5E-32 225.7 25.3 306 9-388 142-482 (485)
69 KOG1336 Monodehydroascorbate/f 100.0 1.2E-27 2.5E-32 214.3 18.6 265 10-367 74-354 (478)
70 PRK13984 putative oxidoreducta 100.0 1.1E-27 2.4E-32 235.5 19.1 292 9-386 282-603 (604)
71 TIGR03385 CoA_CoA_reduc CoA-di 100.0 1.5E-27 3.1E-32 225.9 18.4 271 24-383 1-304 (427)
72 PLN02852 ferredoxin-NADP+ redu 100.0 1.9E-26 4.2E-31 216.2 24.5 328 8-386 24-423 (491)
73 COG3634 AhpF Alkyl hydroperoxi 99.9 1.3E-26 2.8E-31 198.2 17.3 287 8-384 209-514 (520)
74 PRK12771 putative glutamate sy 99.9 2.3E-26 5E-31 224.0 21.1 293 9-388 136-447 (564)
75 KOG1335 Dihydrolipoamide dehyd 99.9 6.9E-26 1.5E-30 196.1 19.3 303 9-383 38-377 (506)
76 KOG4716 Thioredoxin reductase 99.9 3.3E-26 7E-31 195.0 16.5 322 8-386 17-368 (503)
77 TIGR01372 soxA sarcosine oxida 99.9 9.9E-25 2.2E-29 223.8 25.4 275 10-386 163-473 (985)
78 COG1251 NirB NAD(P)H-nitrite r 99.9 8.5E-26 1.8E-30 211.6 15.4 285 11-385 4-308 (793)
79 KOG2495 NADH-dehydrogenase (ub 99.9 8.6E-25 1.9E-29 192.4 17.6 289 8-385 53-397 (491)
80 PF13434 K_oxygenase: L-lysine 99.9 1.7E-25 3.6E-30 202.6 12.9 201 10-215 2-234 (341)
81 KOG0399 Glutamate synthase [Am 99.9 2.4E-24 5.2E-29 207.2 15.3 313 9-387 1784-2122(2142)
82 COG3486 IucD Lysine/ornithine 99.9 3.4E-23 7.4E-28 182.1 20.8 329 9-363 4-386 (436)
83 COG0493 GltD NADPH-dependent g 99.9 4.2E-21 9.1E-26 178.6 14.2 295 10-384 123-450 (457)
84 KOG1800 Ferredoxin/adrenodoxin 99.9 2.3E-20 5E-25 162.0 17.7 324 9-385 19-407 (468)
85 PTZ00188 adrenodoxin reductase 99.8 7.1E-19 1.5E-23 162.5 25.0 163 9-205 38-251 (506)
86 COG0446 HcaD Uncharacterized N 99.8 3.3E-19 7.1E-24 168.8 18.0 278 13-382 1-309 (415)
87 COG4529 Uncharacterized protei 99.8 2.8E-16 6E-21 142.7 27.5 193 10-205 1-231 (474)
88 KOG1346 Programmed cell death 99.8 1.1E-18 2.3E-23 153.2 9.9 302 11-394 179-532 (659)
89 PRK09897 hypothetical protein; 99.8 4.3E-16 9.4E-21 148.4 27.8 186 10-205 1-245 (534)
90 PRK06567 putative bifunctional 99.8 2.2E-17 4.8E-22 163.0 19.1 200 8-228 381-603 (1028)
91 PF07992 Pyr_redox_2: Pyridine 99.7 7.1E-19 1.5E-23 149.4 1.4 119 12-151 1-130 (201)
92 COG1148 HdrA Heterodisulfide r 99.7 7E-15 1.5E-19 132.1 20.7 78 307-385 461-545 (622)
93 KOG2755 Oxidoreductase [Genera 99.6 2.2E-13 4.8E-18 113.1 15.4 296 13-365 2-322 (334)
94 KOG3851 Sulfide:quinone oxidor 99.5 3.2E-14 7E-19 121.3 10.3 84 307-394 281-370 (446)
95 COG2081 Predicted flavoprotein 99.5 3.6E-14 7.7E-19 126.0 9.0 133 9-143 2-169 (408)
96 PF03486 HI0933_like: HI0933-l 99.5 8.1E-13 1.7E-17 122.5 12.8 132 11-143 1-168 (409)
97 PRK05329 anaerobic glycerol-3- 99.4 1.1E-11 2.4E-16 115.3 17.9 35 9-43 1-35 (422)
98 TIGR02032 GG-red-SF geranylger 99.4 7.8E-12 1.7E-16 112.7 12.2 129 11-141 1-148 (295)
99 PF13454 NAD_binding_9: FAD-NA 99.3 1.8E-11 3.9E-16 98.9 12.6 124 14-139 1-155 (156)
100 TIGR02023 BchP-ChlP geranylger 99.3 1.9E-11 4.1E-16 114.5 13.5 130 11-143 1-157 (388)
101 PRK04176 ribulose-1,5-biphosph 99.3 3.6E-11 7.8E-16 105.1 14.0 132 9-141 24-173 (257)
102 PRK06183 mhpA 3-(3-hydroxyphen 99.3 5.7E-11 1.2E-15 115.9 16.4 142 1-144 1-177 (538)
103 PRK10157 putative oxidoreducta 99.3 5.1E-11 1.1E-15 112.7 15.5 131 9-141 4-164 (428)
104 PRK08244 hypothetical protein; 99.3 4.9E-11 1.1E-15 115.3 15.5 131 10-142 2-160 (493)
105 PRK06847 hypothetical protein; 99.3 8.4E-11 1.8E-15 109.8 16.1 133 10-144 4-166 (375)
106 COG3380 Predicted NAD/FAD-depe 99.3 2.3E-11 4.9E-16 102.0 9.9 126 10-139 1-158 (331)
107 TIGR00292 thiazole biosynthesi 99.3 6.7E-11 1.5E-15 103.0 13.3 132 9-140 20-169 (254)
108 PLN02463 lycopene beta cyclase 99.3 7.1E-11 1.5E-15 111.3 14.4 125 9-141 27-169 (447)
109 PRK06834 hypothetical protein; 99.3 6.4E-11 1.4E-15 113.6 14.1 132 10-143 3-158 (488)
110 COG0644 FixC Dehydrogenases (f 99.3 3.9E-11 8.5E-16 112.5 12.3 130 9-140 2-151 (396)
111 PRK08013 oxidoreductase; Provi 99.3 5.6E-11 1.2E-15 111.8 13.1 133 10-144 3-171 (400)
112 COG0654 UbiH 2-polyprenyl-6-me 99.3 6.9E-11 1.5E-15 110.6 13.6 133 10-144 2-165 (387)
113 PRK08773 2-octaprenyl-3-methyl 99.3 8.1E-11 1.7E-15 110.6 14.0 131 10-142 6-170 (392)
114 PRK06184 hypothetical protein; 99.3 1.4E-10 2.9E-15 112.4 15.5 132 10-143 3-170 (502)
115 PRK05714 2-octaprenyl-3-methyl 99.3 4.7E-11 1E-15 112.6 11.7 133 10-144 2-171 (405)
116 PRK10015 oxidoreductase; Provi 99.2 1E-10 2.2E-15 110.5 13.6 130 10-141 5-164 (429)
117 PRK07333 2-octaprenyl-6-methox 99.2 1.1E-10 2.5E-15 110.1 13.7 131 10-142 1-168 (403)
118 TIGR01790 carotene-cycl lycope 99.2 1.3E-10 2.8E-15 109.1 13.9 128 12-141 1-141 (388)
119 PRK07190 hypothetical protein; 99.2 1.8E-10 4E-15 110.3 15.1 131 10-142 5-166 (487)
120 PRK06617 2-octaprenyl-6-methox 99.2 9.9E-11 2.1E-15 109.1 12.7 132 10-144 1-163 (374)
121 PLN00093 geranylgeranyl diphos 99.2 1.7E-10 3.7E-15 109.3 13.1 136 6-142 35-200 (450)
122 TIGR00136 gidA glucose-inhibit 99.2 1E-09 2.3E-14 105.0 18.2 130 11-141 1-154 (617)
123 PF05834 Lycopene_cycl: Lycope 99.2 1.9E-10 4.1E-15 106.9 12.9 139 12-161 1-160 (374)
124 COG1635 THI4 Ribulose 1,5-bisp 99.2 1.8E-10 3.8E-15 93.9 10.8 130 10-139 30-176 (262)
125 PRK07608 ubiquinone biosynthes 99.2 2.2E-10 4.8E-15 107.5 13.4 132 8-142 3-168 (388)
126 PRK06185 hypothetical protein; 99.2 3.3E-10 7.1E-15 107.1 14.2 133 9-142 5-170 (407)
127 PF01494 FAD_binding_3: FAD bi 99.2 8.3E-11 1.8E-15 108.9 9.6 131 11-144 2-175 (356)
128 PRK07364 2-octaprenyl-6-methox 99.2 3.7E-10 7.9E-15 107.0 13.7 134 9-144 17-184 (415)
129 PRK08020 ubiF 2-octaprenyl-3-m 99.2 3.2E-10 6.9E-15 106.5 12.9 131 10-142 5-170 (391)
130 PRK07045 putative monooxygenas 99.2 4.2E-10 9.1E-15 105.6 13.7 135 10-144 5-168 (388)
131 PRK06753 hypothetical protein; 99.2 4.9E-10 1.1E-14 104.6 13.3 128 12-144 2-155 (373)
132 TIGR01988 Ubi-OHases Ubiquinon 99.2 4.6E-10 1E-14 105.3 13.2 129 12-142 1-164 (385)
133 PRK07494 2-octaprenyl-6-methox 99.2 4.9E-10 1.1E-14 105.2 13.2 131 10-142 7-168 (388)
134 PRK08132 FAD-dependent oxidore 99.2 9.6E-10 2.1E-14 107.6 15.6 134 8-143 21-187 (547)
135 PRK07588 hypothetical protein; 99.1 4.3E-10 9.2E-15 105.6 12.6 131 11-144 1-161 (391)
136 PLN02697 lycopene epsilon cycl 99.1 5.6E-10 1.2E-14 106.9 13.5 128 10-141 108-248 (529)
137 PF01946 Thi4: Thi4 family; PD 99.1 4.6E-10 1E-14 92.1 10.8 128 10-139 17-163 (230)
138 PRK08243 4-hydroxybenzoate 3-m 99.1 7.1E-10 1.5E-14 104.1 13.7 133 10-144 2-166 (392)
139 PRK08163 salicylate hydroxylas 99.1 2.9E-10 6.4E-15 107.0 11.1 133 10-144 4-169 (396)
140 PRK09126 hypothetical protein; 99.1 6.4E-10 1.4E-14 104.5 13.4 131 10-142 3-168 (392)
141 PRK11445 putative oxidoreducta 99.1 8.2E-10 1.8E-14 101.9 13.5 130 10-143 1-159 (351)
142 TIGR00275 flavoprotein, HI0933 99.1 6.6E-10 1.4E-14 104.1 12.5 127 14-142 1-161 (400)
143 TIGR01989 COQ6 Ubiquinone bios 99.1 5.4E-10 1.2E-14 106.3 12.1 134 11-144 1-186 (437)
144 PRK06126 hypothetical protein; 99.1 1.7E-09 3.6E-14 106.0 15.9 134 8-143 5-190 (545)
145 TIGR02028 ChlP geranylgeranyl 99.1 1E-09 2.2E-14 102.9 13.6 130 11-141 1-160 (398)
146 TIGR01984 UbiH 2-polyprenyl-6- 99.1 5.7E-10 1.2E-14 104.5 11.8 129 12-142 1-163 (382)
147 PRK05868 hypothetical protein; 99.1 1.6E-09 3.6E-14 100.7 14.0 132 10-144 1-163 (372)
148 PRK07236 hypothetical protein; 99.1 2.4E-09 5.2E-14 100.3 14.9 131 10-144 6-157 (386)
149 PF01266 DAO: FAD dependent ox 99.1 4.8E-10 1E-14 103.9 9.8 61 81-143 144-205 (358)
150 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 1.7E-09 3.8E-14 101.2 13.1 133 10-144 2-166 (390)
151 PRK11728 hydroxyglutarate oxid 99.1 1.7E-09 3.6E-14 101.6 12.9 58 82-141 147-204 (393)
152 PRK05732 2-octaprenyl-6-methox 99.1 2E-09 4.4E-14 101.3 13.2 131 10-142 3-170 (395)
153 PRK08850 2-octaprenyl-6-methox 99.1 1.8E-09 4E-14 101.8 12.9 132 10-143 4-170 (405)
154 PRK08849 2-octaprenyl-3-methyl 99.1 2E-09 4.4E-14 100.7 12.6 133 10-144 3-170 (384)
155 PRK06475 salicylate hydroxylas 99.0 2.1E-09 4.6E-14 101.2 12.6 132 11-144 3-170 (400)
156 PF00070 Pyr_redox: Pyridine n 99.0 3.4E-09 7.3E-14 75.1 10.0 78 12-124 1-78 (80)
157 PRK06996 hypothetical protein; 99.0 3.9E-09 8.5E-14 99.2 13.4 130 8-139 9-172 (398)
158 TIGR01377 soxA_mon sarcosine o 99.0 4.3E-09 9.4E-14 98.5 13.5 59 82-142 143-201 (380)
159 PRK11259 solA N-methyltryptoph 99.0 4.6E-09 9.9E-14 98.2 13.6 63 81-145 146-208 (376)
160 PRK07538 hypothetical protein; 99.0 2.1E-08 4.6E-13 94.8 17.0 131 12-144 2-168 (413)
161 PF12831 FAD_oxidored: FAD dep 99.0 3.3E-10 7.2E-15 107.1 4.3 127 12-139 1-148 (428)
162 TIGR03219 salicylate_mono sali 99.0 6.4E-09 1.4E-13 98.4 12.3 128 12-143 2-161 (414)
163 PRK12409 D-amino acid dehydrog 99.0 1.2E-08 2.6E-13 96.5 13.9 59 82-142 195-259 (410)
164 PF13450 NAD_binding_8: NAD(P) 99.0 2E-09 4.4E-14 73.1 6.2 51 15-65 1-51 (68)
165 TIGR01789 lycopene_cycl lycope 99.0 6.5E-09 1.4E-13 96.3 11.5 140 12-161 1-156 (370)
166 PRK08294 phenol 2-monooxygenas 98.9 1.7E-08 3.7E-13 99.8 15.1 135 10-144 32-213 (634)
167 PRK05192 tRNA uridine 5-carbox 98.9 6.7E-09 1.4E-13 99.8 11.2 129 10-140 4-156 (618)
168 PLN02985 squalene monooxygenas 98.9 1.7E-08 3.8E-13 97.2 12.9 135 8-144 41-211 (514)
169 PRK12266 glpD glycerol-3-phosp 98.9 2.9E-08 6.2E-13 96.0 14.3 58 84-143 155-218 (508)
170 PRK13369 glycerol-3-phosphate 98.9 3E-08 6.6E-13 95.9 14.5 60 82-143 153-217 (502)
171 KOG2820 FAD-dependent oxidored 98.9 1.1E-08 2.4E-13 88.8 9.9 139 9-147 6-218 (399)
172 TIGR03329 Phn_aa_oxid putative 98.9 1.7E-08 3.8E-13 96.6 12.3 60 82-144 181-240 (460)
173 PRK06481 fumarate reductase fl 98.9 6.5E-08 1.4E-12 93.6 16.2 132 10-142 61-252 (506)
174 TIGR01813 flavo_cyto_c flavocy 98.9 6.8E-08 1.5E-12 92.2 16.2 130 12-142 1-193 (439)
175 COG0579 Predicted dehydrogenas 98.9 1.6E-08 3.4E-13 93.3 11.0 61 82-143 151-213 (429)
176 PRK07251 pyridine nucleotide-d 98.9 5E-08 1.1E-12 93.0 14.0 99 10-145 157-255 (438)
177 TIGR01373 soxB sarcosine oxida 98.8 6.4E-08 1.4E-12 91.4 14.5 61 81-141 180-240 (407)
178 PLN02661 Putative thiazole syn 98.8 2.7E-08 5.9E-13 89.2 11.1 130 9-139 91-242 (357)
179 PTZ00383 malate:quinone oxidor 98.8 3.9E-08 8.4E-13 93.9 12.8 61 81-142 208-274 (497)
180 PRK01747 mnmC bifunctional tRN 98.8 3.3E-08 7.1E-13 98.9 12.5 60 81-143 405-465 (662)
181 TIGR03364 HpnW_proposed FAD de 98.8 4.2E-08 9.1E-13 91.3 12.3 59 82-146 143-202 (365)
182 PRK05976 dihydrolipoamide dehy 98.8 8.7E-08 1.9E-12 92.2 14.6 102 10-146 180-284 (472)
183 PRK04965 NADH:flavorubredoxin 98.8 5.6E-08 1.2E-12 90.7 12.3 96 10-139 141-237 (377)
184 PRK11101 glpA sn-glycerol-3-ph 98.8 6.7E-08 1.5E-12 94.2 12.8 60 82-142 147-212 (546)
185 PRK08274 tricarballylate dehyd 98.8 1.6E-07 3.5E-12 90.3 15.1 132 9-141 3-192 (466)
186 PLN02927 antheraxanthin epoxid 98.8 8.2E-08 1.8E-12 94.0 12.9 131 9-144 80-251 (668)
187 TIGR03378 glycerol3P_GlpB glyc 98.8 1.5E-06 3.2E-11 80.4 20.4 33 11-43 1-33 (419)
188 PF01134 GIDA: Glucose inhibit 98.8 6.3E-08 1.4E-12 88.3 11.3 126 12-139 1-150 (392)
189 COG1249 Lpd Pyruvate/2-oxoglut 98.8 1.3E-07 2.9E-12 88.7 13.3 101 9-146 172-275 (454)
190 PRK08401 L-aspartate oxidase; 98.8 8.1E-08 1.8E-12 92.0 12.1 131 10-142 1-176 (466)
191 TIGR01350 lipoamide_DH dihydro 98.8 1.3E-07 2.8E-12 90.8 13.3 100 10-146 170-272 (461)
192 PRK06912 acoL dihydrolipoamide 98.7 1.8E-07 3.9E-12 89.6 14.1 100 10-146 170-271 (458)
193 PF04820 Trp_halogenase: Trypt 98.7 2.3E-08 5E-13 94.9 7.7 60 79-139 149-209 (454)
194 PRK13339 malate:quinone oxidor 98.7 2.1E-07 4.6E-12 88.6 13.7 60 82-142 182-248 (497)
195 PRK09754 phenylpropionate diox 98.7 1E-07 2.2E-12 89.5 11.6 95 10-139 144-239 (396)
196 PRK06416 dihydrolipoamide dehy 98.7 2E-07 4.4E-12 89.5 13.8 100 10-146 172-275 (462)
197 PRK00711 D-amino acid dehydrog 98.7 1.8E-07 3.9E-12 88.7 13.2 59 83-142 200-258 (416)
198 PRK13800 putative oxidoreducta 98.7 1.3E-07 2.9E-12 97.4 13.1 36 9-44 12-47 (897)
199 TIGR02053 MerA mercuric reduct 98.7 2.7E-07 5.8E-12 88.7 14.2 100 10-146 166-269 (463)
200 KOG2415 Electron transfer flav 98.7 1.3E-07 2.8E-12 84.4 10.8 133 9-141 75-256 (621)
201 COG0029 NadB Aspartate oxidase 98.7 8.7E-08 1.9E-12 87.9 9.9 128 12-140 9-195 (518)
202 PRK05249 soluble pyridine nucl 98.7 2.2E-07 4.7E-12 89.3 13.4 99 10-145 175-274 (461)
203 PRK14694 putative mercuric red 98.7 2.1E-07 4.6E-12 89.4 13.1 98 10-145 178-275 (468)
204 PRK06116 glutathione reductase 98.7 3.1E-07 6.7E-12 87.9 13.6 101 10-146 167-268 (450)
205 COG2509 Uncharacterized FAD-de 98.7 1.8E-06 4E-11 78.5 17.5 59 84-143 173-232 (486)
206 PRK07121 hypothetical protein; 98.7 5.9E-07 1.3E-11 86.9 15.6 39 9-47 19-57 (492)
207 PRK14727 putative mercuric red 98.7 2.8E-07 6.1E-12 88.7 13.2 97 11-145 189-285 (479)
208 PF00890 FAD_binding_2: FAD bi 98.7 2.3E-07 5E-12 88.0 12.5 130 12-142 1-204 (417)
209 PRK09564 coenzyme A disulfide 98.7 2.2E-07 4.7E-12 88.9 12.2 96 10-139 149-244 (444)
210 PTZ00367 squalene epoxidase; P 98.7 2.1E-07 4.5E-12 90.5 12.0 35 9-43 32-66 (567)
211 TIGR01424 gluta_reduc_2 glutat 98.7 3.4E-07 7.3E-12 87.4 13.2 99 10-145 166-265 (446)
212 PRK09078 sdhA succinate dehydr 98.7 5E-07 1.1E-11 89.0 14.7 45 1-45 2-47 (598)
213 PLN00128 Succinate dehydrogena 98.7 4.7E-07 1E-11 89.4 14.5 39 9-47 49-87 (635)
214 PRK06370 mercuric reductase; V 98.7 3.3E-07 7.2E-12 88.0 13.1 99 10-145 171-273 (463)
215 COG0578 GlpA Glycerol-3-phosph 98.7 5E-07 1.1E-11 85.3 13.7 58 83-142 163-226 (532)
216 PRK08010 pyridine nucleotide-d 98.7 3.5E-07 7.6E-12 87.3 13.1 99 10-145 158-256 (441)
217 COG2081 Predicted flavoprotein 98.7 1.6E-07 3.6E-12 84.1 9.8 151 172-323 3-168 (408)
218 COG1252 Ndh NADH dehydrogenase 98.6 3.7E-07 8E-12 83.7 11.7 98 11-147 156-268 (405)
219 PF00070 Pyr_redox: Pyridine n 98.6 8.9E-08 1.9E-12 67.8 6.1 37 174-211 1-37 (80)
220 TIGR01421 gluta_reduc_1 glutat 98.6 6.7E-07 1.5E-11 85.3 14.0 100 10-145 166-267 (450)
221 PRK07818 dihydrolipoamide dehy 98.6 5.1E-07 1.1E-11 86.8 13.3 99 10-145 172-275 (466)
222 PRK08255 salicylyl-CoA 5-hydro 98.6 8.7E-08 1.9E-12 97.1 8.4 119 12-143 2-143 (765)
223 PRK06327 dihydrolipoamide dehy 98.6 6.1E-07 1.3E-11 86.3 13.8 100 10-146 183-287 (475)
224 PLN02507 glutathione reductase 98.6 5.6E-07 1.2E-11 86.9 13.4 99 10-145 203-302 (499)
225 PTZ00139 Succinate dehydrogena 98.6 8.8E-07 1.9E-11 87.5 15.0 39 9-47 28-66 (617)
226 COG0665 DadA Glycine/D-amino a 98.6 2.4E-07 5.2E-12 87.0 10.7 60 81-142 153-213 (387)
227 PRK13748 putative mercuric red 98.6 4.1E-07 8.9E-12 89.6 12.8 98 10-145 270-367 (561)
228 PRK07845 flavoprotein disulfid 98.6 6.4E-07 1.4E-11 85.9 13.6 98 11-145 178-276 (466)
229 PLN02464 glycerol-3-phosphate 98.6 4.6E-07 1E-11 89.6 12.9 61 82-142 230-297 (627)
230 PRK07846 mycothione reductase; 98.6 5.6E-07 1.2E-11 85.8 13.0 99 10-146 166-265 (451)
231 PRK06854 adenylylsulfate reduc 98.6 6.4E-07 1.4E-11 88.4 13.7 133 9-142 10-196 (608)
232 TIGR03385 CoA_CoA_reduc CoA-di 98.6 5.2E-07 1.1E-11 85.8 11.9 98 10-144 137-234 (427)
233 PRK06115 dihydrolipoamide dehy 98.6 7.9E-07 1.7E-11 85.3 13.1 99 10-145 174-278 (466)
234 COG0445 GidA Flavin-dependent 98.6 1.7E-06 3.6E-11 80.5 14.4 130 10-140 4-157 (621)
235 TIGR00551 nadB L-aspartate oxi 98.6 7.7E-07 1.7E-11 85.9 12.8 130 10-142 2-190 (488)
236 PRK07804 L-aspartate oxidase; 98.6 1.5E-06 3.2E-11 84.8 14.8 135 8-142 14-211 (541)
237 TIGR01320 mal_quin_oxido malat 98.6 9E-07 2E-11 84.8 13.1 61 82-143 176-242 (483)
238 KOG1335 Dihydrolipoamide dehyd 98.5 1.3E-06 2.9E-11 77.4 12.2 148 10-197 211-369 (506)
239 PRK13512 coenzyme A disulfide 98.5 6.3E-07 1.4E-11 85.3 11.3 95 10-145 148-243 (438)
240 PTZ00052 thioredoxin reductase 98.5 1.2E-06 2.6E-11 84.6 13.3 97 11-145 183-280 (499)
241 TIGR01438 TGR thioredoxin and 98.5 1.2E-06 2.6E-11 84.2 13.1 97 11-145 181-281 (484)
242 TIGR03452 mycothione_red mycot 98.5 1.3E-06 2.8E-11 83.4 13.3 98 10-145 169-267 (452)
243 PRK14989 nitrite reductase sub 98.5 7.5E-07 1.6E-11 90.6 12.1 102 10-145 145-247 (847)
244 PRK07057 sdhA succinate dehydr 98.5 2.6E-06 5.7E-11 83.9 15.5 37 8-44 10-46 (591)
245 PRK12842 putative succinate de 98.5 1.7E-06 3.6E-11 85.2 14.1 40 8-47 7-46 (574)
246 PRK12839 hypothetical protein; 98.5 3.4E-06 7.3E-11 82.7 16.0 40 9-48 7-46 (572)
247 PTZ00058 glutathione reductase 98.5 1.6E-06 3.5E-11 84.3 13.5 100 10-145 237-338 (561)
248 PRK13977 myosin-cross-reactive 98.5 4.6E-06 1E-10 79.8 15.9 42 9-50 21-66 (576)
249 PRK06467 dihydrolipoamide dehy 98.5 1.8E-06 4E-11 82.9 13.5 97 11-145 175-276 (471)
250 PRK06175 L-aspartate oxidase; 98.5 1.9E-06 4.2E-11 81.7 13.4 37 10-47 4-40 (433)
251 PRK05335 tRNA (uracil-5-)-meth 98.5 4E-07 8.7E-12 83.9 8.4 36 10-45 2-37 (436)
252 TIGR01423 trypano_reduc trypan 98.5 1.8E-06 3.9E-11 82.9 13.3 100 10-145 187-290 (486)
253 PRK07573 sdhA succinate dehydr 98.5 2.6E-06 5.6E-11 84.5 14.7 37 9-45 34-70 (640)
254 COG1233 Phytoene dehydrogenase 98.5 1.6E-07 3.4E-12 90.3 6.0 49 10-58 3-51 (487)
255 PRK08958 sdhA succinate dehydr 98.5 2E-06 4.4E-11 84.5 13.8 37 10-46 7-43 (588)
256 PRK05945 sdhA succinate dehydr 98.5 1.3E-06 2.8E-11 85.9 12.4 131 10-142 3-198 (575)
257 PRK05257 malate:quinone oxidor 98.5 4.9E-07 1.1E-11 86.7 9.0 58 85-143 184-248 (494)
258 PRK08275 putative oxidoreducta 98.5 3.5E-06 7.6E-11 82.6 14.9 134 9-142 8-201 (554)
259 PRK06292 dihydrolipoamide dehy 98.5 2.3E-06 5.1E-11 82.2 13.4 100 10-146 169-271 (460)
260 TIGR02374 nitri_red_nirB nitri 98.5 1.1E-06 2.3E-11 89.4 11.2 100 10-145 140-240 (785)
261 KOG2614 Kynurenine 3-monooxyge 98.5 5.2E-07 1.1E-11 81.1 7.8 37 10-46 2-38 (420)
262 TIGR01812 sdhA_frdA_Gneg succi 98.5 3.8E-06 8.3E-11 82.7 14.7 129 12-142 1-192 (566)
263 PRK12835 3-ketosteroid-delta-1 98.5 6.3E-06 1.4E-10 81.0 16.1 39 9-47 10-48 (584)
264 PRK07208 hypothetical protein; 98.5 5.4E-07 1.2E-11 87.1 8.4 48 9-56 3-50 (479)
265 COG0446 HcaD Uncharacterized N 98.4 2E-06 4.4E-11 81.4 11.9 101 10-144 136-238 (415)
266 PRK06134 putative FAD-binding 98.4 1.1E-05 2.3E-10 79.6 17.0 40 8-47 10-49 (581)
267 PRK07803 sdhA succinate dehydr 98.4 3E-06 6.5E-11 84.0 13.2 38 9-46 7-44 (626)
268 PRK06452 sdhA succinate dehydr 98.4 4.2E-06 9.2E-11 82.0 14.0 38 9-46 4-41 (566)
269 PRK06069 sdhA succinate dehydr 98.4 3.5E-06 7.6E-11 83.0 13.2 39 9-47 4-45 (577)
270 KOG0029 Amine oxidase [Seconda 98.4 3.3E-07 7.2E-12 87.3 5.6 40 8-47 13-52 (501)
271 PTZ00153 lipoamide dehydrogena 98.4 4.7E-06 1E-10 82.3 13.8 101 10-145 312-429 (659)
272 TIGR00137 gid_trmFO tRNA:m(5)U 98.4 1E-06 2.3E-11 81.7 8.5 39 351-389 327-367 (433)
273 PLN02546 glutathione reductase 98.4 4.7E-06 1E-10 81.1 13.3 100 10-145 252-352 (558)
274 PRK09231 fumarate reductase fl 98.4 4.7E-06 1E-10 81.9 13.3 39 9-47 3-43 (582)
275 PRK07395 L-aspartate oxidase; 98.4 2.9E-06 6.3E-11 82.8 11.0 39 8-47 7-45 (553)
276 PRK06263 sdhA succinate dehydr 98.4 6.4E-06 1.4E-10 80.6 13.4 132 9-141 6-197 (543)
277 PRK08205 sdhA succinate dehydr 98.4 1.1E-05 2.4E-10 79.5 15.0 59 83-141 139-206 (583)
278 PTZ00318 NADH dehydrogenase-li 98.3 3.9E-06 8.5E-11 79.6 11.2 90 11-139 174-278 (424)
279 KOG1298 Squalene monooxygenase 98.3 1.6E-06 3.5E-11 76.9 7.7 34 9-42 44-77 (509)
280 TIGR01176 fum_red_Fp fumarate 98.3 6E-06 1.3E-10 81.0 12.3 38 10-47 3-42 (580)
281 PTZ00306 NADH-dependent fumara 98.3 1.1E-05 2.4E-10 85.4 14.8 40 8-47 407-446 (1167)
282 PRK08641 sdhA succinate dehydr 98.3 1.3E-05 2.8E-10 79.0 14.2 37 10-46 3-39 (589)
283 COG1231 Monoamine oxidase [Ami 98.3 9.4E-06 2E-10 74.3 12.1 39 9-47 6-44 (450)
284 PRK07843 3-ketosteroid-delta-1 98.3 1.3E-05 2.8E-10 78.6 13.7 39 9-47 6-44 (557)
285 PF06039 Mqo: Malate:quinone o 98.3 1.3E-05 2.9E-10 73.7 12.6 58 85-143 182-246 (488)
286 PRK08071 L-aspartate oxidase; 98.3 5.3E-06 1.1E-10 80.4 10.9 37 10-47 3-39 (510)
287 PRK12845 3-ketosteroid-delta-1 98.3 2.3E-05 5.1E-10 76.6 15.4 38 9-47 15-52 (564)
288 PLN02576 protoporphyrinogen ox 98.3 1.7E-06 3.6E-11 84.1 7.4 44 8-51 10-54 (496)
289 PLN02815 L-aspartate oxidase 98.3 7.9E-06 1.7E-10 80.2 12.0 38 9-47 28-65 (594)
290 PRK12843 putative FAD-binding 98.3 2.9E-05 6.4E-10 76.5 15.9 39 10-48 16-54 (578)
291 PRK11883 protoporphyrinogen ox 98.3 1E-06 2.2E-11 84.6 5.5 45 11-55 1-47 (451)
292 TIGR02485 CobZ_N-term precorri 98.3 1.1E-05 2.3E-10 76.9 12.2 59 83-141 122-183 (432)
293 TIGR01811 sdhA_Bsu succinate d 98.3 1.3E-05 2.9E-10 79.0 13.1 33 13-45 1-33 (603)
294 PRK12844 3-ketosteroid-delta-1 98.3 2.8E-05 6E-10 76.2 15.3 38 10-47 6-43 (557)
295 PRK08626 fumarate reductase fl 98.3 1.8E-05 3.9E-10 78.8 14.1 37 9-45 4-40 (657)
296 TIGR00562 proto_IX_ox protopor 98.2 1.6E-06 3.5E-11 83.4 6.1 42 10-51 2-47 (462)
297 KOG1336 Monodehydroascorbate/f 98.2 9E-06 1.9E-10 74.6 10.3 106 10-149 213-319 (478)
298 KOG2852 Possible oxidoreductas 98.2 1.3E-05 2.7E-10 68.6 10.3 46 1-46 1-52 (380)
299 PLN02268 probable polyamine ox 98.2 1.7E-06 3.8E-11 82.5 5.9 38 11-48 1-38 (435)
300 TIGR02061 aprA adenosine phosp 98.2 1.7E-05 3.7E-10 77.9 12.6 33 12-44 1-37 (614)
301 PRK10262 thioredoxin reductase 98.2 1.1E-05 2.4E-10 73.6 10.7 99 10-145 146-250 (321)
302 PRK07512 L-aspartate oxidase; 98.2 1.7E-05 3.8E-10 76.9 12.5 35 8-44 7-41 (513)
303 PLN02676 polyamine oxidase 98.2 2.8E-06 6.1E-11 81.7 6.9 49 9-57 25-74 (487)
304 PRK09077 L-aspartate oxidase; 98.2 3.8E-05 8.2E-10 75.0 14.7 39 8-47 6-44 (536)
305 TIGR00031 UDP-GALP_mutase UDP- 98.2 2.4E-06 5.3E-11 78.6 6.0 41 10-50 1-41 (377)
306 TIGR02733 desat_CrtD C-3',4' d 98.2 2.7E-06 5.8E-11 82.5 6.5 39 11-49 2-40 (492)
307 COG1232 HemY Protoporphyrinoge 98.2 2.2E-06 4.8E-11 79.9 5.3 48 12-59 2-51 (444)
308 PRK07233 hypothetical protein; 98.2 2.2E-06 4.7E-11 81.8 5.3 38 12-49 1-38 (434)
309 PRK12416 protoporphyrinogen ox 98.2 2.3E-06 5.1E-11 82.2 5.4 42 10-51 1-48 (463)
310 COG3349 Uncharacterized conser 98.2 2.2E-06 4.8E-11 79.7 4.9 37 11-47 1-37 (485)
311 KOG0685 Flavin-containing amin 98.1 3.1E-06 6.6E-11 77.5 5.4 42 10-51 21-63 (498)
312 TIGR02734 crtI_fam phytoene de 98.1 3.4E-06 7.3E-11 82.0 5.8 36 13-48 1-36 (502)
313 COG3075 GlpB Anaerobic glycero 98.1 1.2E-05 2.5E-10 70.2 8.3 54 85-139 259-315 (421)
314 COG2907 Predicted NAD/FAD-bind 98.1 1.1E-05 2.5E-10 70.7 7.7 39 9-48 7-45 (447)
315 TIGR02730 carot_isom carotene 98.1 4.7E-06 1E-10 80.7 6.1 38 11-48 1-38 (493)
316 TIGR03169 Nterm_to_SelD pyridi 98.1 2.5E-05 5.5E-10 72.6 10.6 90 10-139 145-241 (364)
317 KOG2404 Fumarate reductase, fl 98.1 4.7E-05 1E-09 66.2 10.8 37 11-47 10-46 (477)
318 PLN02568 polyamine oxidase 98.1 6.9E-06 1.5E-10 79.7 6.3 42 10-51 5-51 (539)
319 TIGR03140 AhpF alkyl hydropero 98.1 4.2E-05 9.1E-10 74.4 11.6 94 10-145 352-452 (515)
320 COG0562 Glf UDP-galactopyranos 98.0 6E-06 1.3E-10 71.8 5.0 41 10-50 1-41 (374)
321 TIGR01292 TRX_reduct thioredox 98.0 4.2E-05 9.1E-10 69.0 10.8 89 10-139 141-236 (300)
322 KOG2495 NADH-dehydrogenase (ub 98.0 8.1E-06 1.7E-10 73.7 5.5 98 11-145 219-333 (491)
323 KOG2844 Dimethylglycine dehydr 98.0 2.9E-05 6.2E-10 73.9 9.2 62 80-142 183-244 (856)
324 COG1053 SdhA Succinate dehydro 98.0 6.8E-05 1.5E-09 72.8 11.3 38 9-46 5-42 (562)
325 TIGR01316 gltA glutamate synth 98.0 6.9E-05 1.5E-09 71.6 11.2 92 10-139 272-385 (449)
326 PF03486 HI0933_like: HI0933-l 98.0 1.1E-05 2.3E-10 75.4 5.5 149 174-323 2-167 (409)
327 TIGR02731 phytoene_desat phyto 98.0 9.7E-06 2.1E-10 77.8 5.3 37 12-48 1-37 (453)
328 PRK01438 murD UDP-N-acetylmura 97.9 2.9E-05 6.3E-10 75.0 8.1 34 10-43 16-49 (480)
329 PRK12770 putative glutamate sy 97.9 5.2E-05 1.1E-09 70.1 9.5 91 10-139 172-284 (352)
330 KOG2311 NAD/FAD-utilizing prot 97.9 5.8E-05 1.2E-09 69.1 9.1 132 8-140 26-185 (679)
331 PF13434 K_oxygenase: L-lysine 97.9 3.6E-05 7.9E-10 70.3 7.9 128 9-139 189-339 (341)
332 COG3573 Predicted oxidoreducta 97.9 0.00011 2.4E-09 64.4 10.1 39 10-48 5-45 (552)
333 PRK12831 putative oxidoreducta 97.8 0.00017 3.7E-09 69.1 11.5 92 10-139 281-394 (464)
334 PLN02529 lysine-specific histo 97.8 2.4E-05 5.2E-10 77.9 5.8 41 9-49 159-199 (738)
335 TIGR02732 zeta_caro_desat caro 97.8 2.2E-05 4.8E-10 75.4 5.2 37 12-48 1-37 (474)
336 PRK15317 alkyl hydroperoxide r 97.8 0.00016 3.5E-09 70.5 11.0 90 10-139 351-447 (517)
337 PRK11749 dihydropyrimidine deh 97.8 0.0002 4.4E-09 68.7 11.3 93 10-139 273-385 (457)
338 PLN02328 lysine-specific histo 97.8 3.7E-05 8.1E-10 77.1 6.0 40 9-48 237-276 (808)
339 PRK04176 ribulose-1,5-biphosph 97.8 0.00021 4.6E-09 62.6 10.0 36 170-205 23-58 (257)
340 PLN02487 zeta-carotene desatur 97.8 3.4E-05 7.4E-10 75.1 5.2 39 11-49 76-114 (569)
341 PRK12837 3-ketosteroid-delta-1 97.7 3.6E-05 7.8E-10 74.8 5.2 37 10-47 7-43 (513)
342 PRK12834 putative FAD-binding 97.7 4.2E-05 9.2E-10 75.0 5.6 39 9-47 3-43 (549)
343 PTZ00363 rab-GDP dissociation 97.7 3.7E-05 8E-10 72.6 4.9 43 10-52 4-46 (443)
344 PLN02612 phytoene desaturase 97.7 6.2E-05 1.3E-09 73.9 6.3 41 8-48 91-131 (567)
345 PRK12779 putative bifunctional 97.7 9.9E-05 2.1E-09 76.3 7.6 36 170-205 304-339 (944)
346 COG1206 Gid NAD(FAD)-utilizing 97.7 6.5E-05 1.4E-09 65.6 4.9 34 11-44 4-37 (439)
347 KOG1276 Protoporphyrinogen oxi 97.7 6E-05 1.3E-09 68.2 4.7 44 8-51 9-54 (491)
348 TIGR00292 thiazole biosynthesi 97.6 0.00047 1E-08 60.3 10.0 35 171-205 20-54 (254)
349 TIGR02462 pyranose_ox pyranose 97.6 6.9E-05 1.5E-09 72.2 5.1 39 11-49 1-39 (544)
350 KOG0042 Glycerol-3-phosphate d 97.6 7.4E-05 1.6E-09 69.5 4.9 41 8-48 65-105 (680)
351 PF01134 GIDA: Glucose inhibit 97.6 8.7E-05 1.9E-09 68.1 5.3 134 174-320 1-150 (392)
352 PF00732 GMC_oxred_N: GMC oxid 97.6 4.6E-05 9.9E-10 68.7 3.3 34 11-44 1-35 (296)
353 KOG1399 Flavin-containing mono 97.6 0.0006 1.3E-08 64.2 10.7 35 171-205 5-39 (448)
354 PRK12778 putative bifunctional 97.6 0.00062 1.3E-08 69.5 11.7 93 10-139 570-684 (752)
355 KOG3855 Monooxygenase involved 97.6 0.00098 2.1E-08 60.3 11.3 35 8-42 34-72 (481)
356 PLN02976 amine oxidase 97.6 9.7E-05 2.1E-09 77.2 5.7 44 8-51 691-734 (1713)
357 KOG2853 Possible oxidoreductas 97.6 0.0009 1.9E-08 59.0 10.6 35 9-43 85-123 (509)
358 PRK06834 hypothetical protein; 97.6 0.00051 1.1E-08 66.3 10.3 33 173-205 4-36 (488)
359 PLN03000 amine oxidase 97.5 0.00013 2.8E-09 73.4 5.9 42 10-51 184-225 (881)
360 PLN02463 lycopene beta cyclase 97.5 0.00053 1.2E-08 65.1 9.7 136 172-323 28-170 (447)
361 PRK12810 gltD glutamate syntha 97.5 0.00077 1.7E-08 64.9 10.9 101 10-139 281-398 (471)
362 PRK09853 putative selenate red 97.5 0.00028 6.1E-09 72.4 8.0 36 170-205 537-572 (1019)
363 PRK12814 putative NADPH-depend 97.5 0.0014 3E-08 65.7 12.8 91 10-139 323-435 (652)
364 TIGR01789 lycopene_cycl lycope 97.5 0.00015 3.3E-09 67.3 5.7 32 174-205 1-34 (370)
365 TIGR03143 AhpF_homolog putativ 97.5 0.00065 1.4E-08 66.7 10.1 94 10-145 143-248 (555)
366 PRK06847 hypothetical protein; 97.5 0.00058 1.2E-08 63.8 9.3 34 172-205 4-37 (375)
367 TIGR01318 gltD_gamma_fam gluta 97.5 0.0015 3.2E-08 62.8 12.1 92 10-139 282-396 (467)
368 PF13454 NAD_binding_9: FAD-NA 97.5 0.0013 2.9E-08 53.0 10.0 30 176-205 1-35 (156)
369 KOG2665 Predicted FAD-dependen 97.5 0.0012 2.5E-08 57.7 9.7 39 8-46 46-86 (453)
370 PLN02172 flavin-containing mon 97.4 0.00077 1.7E-08 64.4 9.5 35 171-205 9-43 (461)
371 PRK06567 putative bifunctional 97.4 0.00036 7.8E-09 70.8 7.3 37 169-205 380-416 (1028)
372 TIGR01372 soxA sarcosine oxida 97.4 0.001 2.2E-08 69.7 10.9 93 10-145 317-413 (985)
373 PLN02852 ferredoxin-NADP+ redu 97.4 0.00041 8.8E-09 66.3 7.1 35 171-205 25-61 (491)
374 PF07992 Pyr_redox_2: Pyridine 97.4 9.5E-05 2.1E-09 62.4 2.5 60 305-366 105-200 (201)
375 PRK12769 putative oxidoreducta 97.4 0.0017 3.7E-08 65.2 11.7 93 10-139 468-582 (654)
376 PRK07236 hypothetical protein; 97.4 0.0011 2.3E-08 62.3 9.5 35 171-205 5-39 (386)
377 COG0654 UbiH 2-polyprenyl-6-me 97.4 0.00051 1.1E-08 64.4 7.3 144 172-322 2-162 (387)
378 PLN02661 Putative thiazole syn 97.3 0.0038 8.3E-08 56.6 12.2 38 168-205 88-126 (357)
379 PRK02106 choline dehydrogenase 97.3 0.0003 6.4E-09 69.4 5.2 35 9-43 4-39 (560)
380 KOG0405 Pyridine nucleotide-di 97.3 0.0011 2.4E-08 58.6 7.9 97 9-138 188-284 (478)
381 PF13738 Pyr_redox_3: Pyridine 97.2 0.00053 1.2E-08 57.9 5.2 30 176-205 1-31 (203)
382 TIGR03315 Se_ygfK putative sel 97.2 0.00095 2.1E-08 68.9 7.2 35 171-205 536-570 (1012)
383 PF00743 FMO-like: Flavin-bind 97.2 0.00056 1.2E-08 66.3 5.3 34 172-205 1-34 (531)
384 PRK06753 hypothetical protein; 97.2 0.0022 4.8E-08 59.8 9.1 32 174-205 2-33 (373)
385 PF06100 Strep_67kDa_ant: Stre 97.1 0.0075 1.6E-07 56.6 12.1 40 11-50 3-46 (500)
386 PRK08773 2-octaprenyl-3-methyl 97.1 0.0016 3.5E-08 61.2 7.6 34 172-205 6-39 (392)
387 PRK09897 hypothetical protein; 97.1 0.0046 9.9E-08 60.0 10.7 33 173-205 2-36 (534)
388 KOG1346 Programmed cell death 97.1 0.0021 4.5E-08 58.2 7.5 99 10-145 347-451 (659)
389 KOG3923 D-aspartate oxidase [A 97.1 0.0012 2.7E-08 57.0 5.9 35 9-43 2-43 (342)
390 PRK08163 salicylate hydroxylas 97.1 0.0016 3.6E-08 61.3 7.3 34 172-205 4-37 (396)
391 PRK05192 tRNA uridine 5-carbox 97.1 0.003 6.5E-08 61.6 9.0 33 173-205 5-37 (618)
392 TIGR00275 flavoprotein, HI0933 97.0 0.0024 5.2E-08 60.1 8.2 30 176-205 1-30 (400)
393 PRK05868 hypothetical protein; 97.0 0.0036 7.8E-08 58.4 9.3 33 173-205 2-34 (372)
394 PRK12809 putative oxidoreducta 97.0 0.0094 2E-07 59.7 12.3 92 10-139 451-565 (639)
395 PRK05714 2-octaprenyl-3-methyl 97.0 0.004 8.8E-08 58.8 9.2 32 174-205 4-35 (405)
396 COG2303 BetA Choline dehydroge 97.0 0.00086 1.9E-08 65.4 4.6 36 8-43 5-40 (542)
397 PLN02785 Protein HOTHEAD 96.9 0.0012 2.5E-08 65.0 5.3 35 8-43 53-87 (587)
398 PF05834 Lycopene_cycl: Lycope 96.9 0.0016 3.4E-08 60.8 5.7 133 175-323 2-143 (374)
399 PRK01438 murD UDP-N-acetylmura 96.9 0.003 6.6E-08 61.1 7.8 35 171-205 15-49 (480)
400 KOG2960 Protein involved in th 96.9 0.00023 5E-09 58.2 0.1 41 10-50 76-119 (328)
401 PRK12775 putative trifunctiona 96.9 0.0089 1.9E-07 62.7 11.5 93 10-139 571-684 (1006)
402 PRK09126 hypothetical protein; 96.9 0.0055 1.2E-07 57.6 9.3 33 173-205 4-36 (392)
403 KOG4254 Phytoene desaturase [C 96.9 0.0011 2.5E-08 60.6 4.1 40 8-47 12-51 (561)
404 PRK07364 2-octaprenyl-6-methox 96.9 0.01 2.3E-07 56.2 11.0 34 172-205 18-51 (415)
405 TIGR01790 carotene-cycl lycope 96.8 0.0038 8.2E-08 58.6 7.7 32 174-205 1-32 (388)
406 PTZ00188 adrenodoxin reductase 96.8 0.0017 3.7E-08 61.4 5.3 35 171-205 38-73 (506)
407 TIGR01317 GOGAT_sm_gam glutama 96.8 0.014 3E-07 56.4 11.7 34 10-43 283-317 (485)
408 TIGR01810 betA choline dehydro 96.8 0.001 2.2E-08 65.2 3.9 32 12-43 1-33 (532)
409 PRK07333 2-octaprenyl-6-methox 96.8 0.0041 8.8E-08 58.7 7.9 32 174-205 3-36 (403)
410 COG0492 TrxB Thioredoxin reduc 96.8 0.015 3.2E-07 52.2 11.0 94 10-145 143-240 (305)
411 PRK02705 murD UDP-N-acetylmura 96.8 0.0011 2.4E-08 63.7 3.8 32 12-43 2-33 (459)
412 COG3486 IucD Lysine/ornithine 96.8 0.013 2.8E-07 53.4 10.1 128 12-146 189-343 (436)
413 PRK08244 hypothetical protein; 96.8 0.0079 1.7E-07 58.4 9.5 33 173-205 3-35 (493)
414 TIGR01988 Ubi-OHases Ubiquinon 96.8 0.0034 7.3E-08 58.8 6.7 32 174-205 1-32 (385)
415 TIGR01984 UbiH 2-polyprenyl-6- 96.8 0.0035 7.6E-08 58.7 6.8 32 174-205 1-33 (382)
416 COG2072 TrkA Predicted flavopr 96.7 0.0054 1.2E-07 58.4 7.9 35 171-205 7-42 (443)
417 COG1251 NirB NAD(P)H-nitrite r 96.7 0.0029 6.3E-08 61.6 6.0 99 11-145 146-245 (793)
418 PRK06184 hypothetical protein; 96.7 0.0085 1.8E-07 58.4 9.3 34 172-205 3-36 (502)
419 PRK07608 ubiquinone biosynthes 96.7 0.013 2.8E-07 55.0 10.1 33 173-205 6-38 (388)
420 PRK08850 2-octaprenyl-6-methox 96.7 0.0074 1.6E-07 57.0 8.5 32 173-204 5-36 (405)
421 PRK05329 anaerobic glycerol-3- 96.7 0.013 2.8E-07 55.2 9.8 89 14-139 219-316 (422)
422 PRK10157 putative oxidoreducta 96.7 0.0047 1E-07 58.8 6.9 33 173-205 6-38 (428)
423 PRK14106 murD UDP-N-acetylmura 96.7 0.0029 6.3E-08 60.7 5.5 34 10-43 5-38 (450)
424 PRK07045 putative monooxygenas 96.6 0.013 2.8E-07 55.1 9.7 33 173-205 6-38 (388)
425 COG4529 Uncharacterized protei 96.6 0.01 2.2E-07 55.4 8.4 149 173-326 2-168 (474)
426 PRK08013 oxidoreductase; Provi 96.6 0.012 2.6E-07 55.5 9.0 33 173-205 4-36 (400)
427 PRK13984 putative oxidoreducta 96.6 0.024 5.1E-07 56.6 11.5 31 10-40 418-454 (604)
428 TIGR03219 salicylate_mono sali 96.6 0.011 2.4E-07 56.0 8.8 32 174-205 2-34 (414)
429 PF13450 NAD_binding_8: NAD(P) 96.5 0.0031 6.7E-08 42.7 3.4 29 177-205 1-29 (68)
430 PRK06617 2-octaprenyl-6-methox 96.5 0.0067 1.4E-07 56.7 6.8 32 174-205 3-34 (374)
431 KOG4716 Thioredoxin reductase 96.5 0.0045 9.8E-08 54.6 5.1 94 11-139 199-298 (503)
432 PRK07588 hypothetical protein; 96.5 0.0073 1.6E-07 56.8 7.1 32 174-205 2-33 (391)
433 KOG0399 Glutamate synthase [Am 96.5 0.0047 1E-07 62.7 5.6 40 166-205 1779-1818(2142)
434 PRK08020 ubiF 2-octaprenyl-3-m 96.4 0.013 2.7E-07 55.2 8.3 34 172-205 5-38 (391)
435 TIGR02032 GG-red-SF geranylger 96.4 0.0073 1.6E-07 54.2 6.4 32 174-205 2-33 (295)
436 PF01210 NAD_Gly3P_dh_N: NAD-d 96.4 0.0032 6.9E-08 50.8 3.5 32 12-43 1-32 (157)
437 TIGR03862 flavo_PP4765 unchara 96.4 0.017 3.7E-07 53.3 8.6 57 81-141 83-141 (376)
438 KOG2755 Oxidoreductase [Genera 96.4 0.0096 2.1E-07 50.7 6.2 31 175-205 2-34 (334)
439 TIGR01989 COQ6 Ubiquinone bios 96.4 0.013 2.7E-07 56.1 7.9 32 174-205 2-37 (437)
440 PRK08401 L-aspartate oxidase; 96.4 0.044 9.6E-07 52.8 11.6 33 173-205 2-34 (466)
441 COG1148 HdrA Heterodisulfide r 96.4 0.0072 1.6E-07 56.0 5.7 35 171-205 123-157 (622)
442 PRK12771 putative glutamate sy 96.4 0.078 1.7E-06 52.4 13.5 92 10-139 267-378 (564)
443 PRK08849 2-octaprenyl-3-methyl 96.4 0.01 2.2E-07 55.6 7.1 33 173-205 4-36 (384)
444 PRK06475 salicylate hydroxylas 96.3 0.019 4E-07 54.2 8.5 33 173-205 3-35 (400)
445 TIGR01470 cysG_Nterm siroheme 96.3 0.01 2.3E-07 50.0 6.1 36 170-205 7-42 (205)
446 PLN02927 antheraxanthin epoxid 96.3 0.023 5E-07 56.4 9.3 36 170-205 79-114 (668)
447 TIGR00136 gidA glucose-inhibit 96.3 0.01 2.2E-07 57.9 6.6 32 174-205 2-33 (617)
448 PRK07494 2-octaprenyl-6-methox 96.3 0.011 2.4E-07 55.4 7.0 33 173-205 8-40 (388)
449 TIGR02028 ChlP geranylgeranyl 96.3 0.021 4.5E-07 53.8 8.7 32 174-205 2-33 (398)
450 PRK07190 hypothetical protein; 96.3 0.029 6.4E-07 54.2 9.8 33 173-205 6-38 (487)
451 PLN02697 lycopene epsilon cycl 96.2 0.02 4.2E-07 55.6 8.2 33 173-205 109-141 (529)
452 KOG1238 Glucose dehydrogenase/ 96.2 0.0062 1.3E-07 58.7 4.5 38 8-45 55-93 (623)
453 PLN00093 geranylgeranyl diphos 96.2 0.058 1.3E-06 51.6 11.1 35 171-205 38-72 (450)
454 PRK06996 hypothetical protein; 96.1 0.011 2.4E-07 55.7 6.1 34 172-205 11-48 (398)
455 PRK08243 4-hydroxybenzoate 3-m 96.1 0.025 5.5E-07 53.2 8.4 33 173-205 3-35 (392)
456 PRK06718 precorrin-2 dehydroge 96.1 0.017 3.8E-07 48.5 6.5 35 169-203 7-41 (202)
457 PRK06183 mhpA 3-(3-hydroxyphen 96.1 0.03 6.4E-07 55.1 9.1 34 172-205 10-43 (538)
458 PF12831 FAD_oxidored: FAD dep 96.1 0.0042 9.2E-08 59.0 3.1 32 174-205 1-32 (428)
459 PRK10015 oxidoreductase; Provi 96.1 0.014 3.1E-07 55.4 6.6 33 173-205 6-38 (429)
460 KOG2614 Kynurenine 3-monooxyge 96.0 0.023 5E-07 51.9 7.2 34 172-205 2-35 (420)
461 PRK05562 precorrin-2 dehydroge 96.0 0.019 4E-07 48.7 6.1 34 170-203 23-56 (223)
462 PRK11445 putative oxidoreducta 95.9 0.016 3.6E-07 53.5 6.0 31 174-205 3-33 (351)
463 COG0493 GltD NADPH-dependent g 95.9 0.013 2.8E-07 55.6 5.3 37 169-205 120-156 (457)
464 TIGR02023 BchP-ChlP geranylger 95.9 0.058 1.2E-06 50.7 9.6 31 174-204 2-32 (388)
465 TIGR01470 cysG_Nterm siroheme 95.8 0.015 3.2E-07 49.0 4.7 34 10-43 9-42 (205)
466 KOG3851 Sulfide:quinone oxidor 95.8 0.027 5.9E-07 49.5 6.2 28 298-325 121-148 (446)
467 TIGR02352 thiamin_ThiO glycine 95.8 0.079 1.7E-06 48.5 9.9 64 80-144 133-196 (337)
468 PF02737 3HCDH_N: 3-hydroxyacy 95.7 0.012 2.7E-07 48.5 3.9 32 12-43 1-32 (180)
469 TIGR02360 pbenz_hydroxyl 4-hyd 95.7 0.04 8.6E-07 51.8 7.8 33 173-205 3-35 (390)
470 COG0445 GidA Flavin-dependent 95.7 0.044 9.6E-07 52.0 7.6 33 173-205 5-37 (621)
471 COG0569 TrkA K+ transport syst 95.7 0.016 3.5E-07 49.6 4.6 32 12-43 2-33 (225)
472 PF02558 ApbA: Ketopantoate re 95.6 0.021 4.5E-07 45.6 4.7 31 175-205 1-31 (151)
473 PF13241 NAD_binding_7: Putati 95.5 0.0097 2.1E-07 44.1 2.4 34 10-43 7-40 (103)
474 TIGR03197 MnmC_Cterm tRNA U-34 95.5 0.033 7.2E-07 52.1 6.6 62 80-144 131-193 (381)
475 PRK06719 precorrin-2 dehydroge 95.5 0.019 4.2E-07 46.1 4.3 33 10-42 13-45 (157)
476 PF13241 NAD_binding_7: Putati 95.5 0.013 2.8E-07 43.4 3.0 35 170-204 5-39 (103)
477 TIGR00551 nadB L-aspartate oxi 95.5 0.13 2.9E-06 49.8 10.8 31 174-205 4-34 (488)
478 PRK05335 tRNA (uracil-5-)-meth 95.4 0.017 3.8E-07 53.8 3.9 33 173-205 3-35 (436)
479 TIGR03378 glycerol3P_GlpB glyc 95.4 0.084 1.8E-06 49.4 8.4 61 78-140 257-321 (419)
480 PF01488 Shikimate_DH: Shikima 95.3 0.035 7.6E-07 43.4 5.0 36 8-43 10-46 (135)
481 PRK05732 2-octaprenyl-6-methox 95.3 0.053 1.1E-06 51.0 7.2 32 173-204 4-38 (395)
482 PRK08274 tricarballylate dehyd 95.3 0.14 3.1E-06 49.3 10.2 33 173-205 5-37 (466)
483 COG0644 FixC Dehydrogenases (f 95.3 0.059 1.3E-06 50.7 7.3 33 173-205 4-36 (396)
484 PRK06718 precorrin-2 dehydroge 95.2 0.029 6.2E-07 47.2 4.5 34 9-42 9-42 (202)
485 KOG2304 3-hydroxyacyl-CoA dehy 95.2 0.027 5.8E-07 46.9 4.0 43 1-43 2-44 (298)
486 PF02558 ApbA: Ketopantoate re 95.1 0.032 6.9E-07 44.6 4.4 31 13-43 1-31 (151)
487 PF03721 UDPG_MGDP_dh_N: UDP-g 95.1 0.02 4.3E-07 47.5 3.2 33 12-44 2-34 (185)
488 PF01593 Amino_oxidase: Flavin 95.1 0.027 5.8E-07 53.4 4.5 46 93-140 218-264 (450)
489 TIGR00137 gid_trmFO tRNA:m(5)U 95.1 0.022 4.8E-07 53.4 3.7 32 174-205 2-33 (433)
490 PRK07819 3-hydroxybutyryl-CoA 95.0 0.036 7.8E-07 49.5 4.9 34 10-43 5-38 (286)
491 PRK06129 3-hydroxyacyl-CoA deh 95.0 0.031 6.8E-07 50.6 4.5 33 11-43 3-35 (308)
492 PF00996 GDI: GDP dissociation 95.0 0.031 6.7E-07 52.6 4.5 45 9-53 3-47 (438)
493 COG1004 Ugd Predicted UDP-gluc 95.0 0.075 1.6E-06 48.5 6.7 86 174-324 2-90 (414)
494 PRK06719 precorrin-2 dehydroge 94.9 0.037 8E-07 44.5 4.0 34 169-202 10-43 (157)
495 PRK09260 3-hydroxybutyryl-CoA 94.8 0.041 9E-07 49.3 4.7 33 11-43 2-34 (288)
496 PF00899 ThiF: ThiF family; I 94.8 0.041 8.9E-07 43.0 4.1 33 11-43 3-36 (135)
497 PRK07066 3-hydroxybutyryl-CoA 94.8 0.046 1E-06 49.4 4.9 34 10-43 7-40 (321)
498 PF04820 Trp_halogenase: Trypt 94.8 0.059 1.3E-06 51.6 5.9 32 174-205 1-35 (454)
499 PRK08293 3-hydroxybutyryl-CoA 94.7 0.045 9.7E-07 49.0 4.6 34 10-43 3-36 (287)
500 COG1635 THI4 Ribulose 1,5-bisp 94.7 0.047 1E-06 45.6 4.2 37 169-205 27-63 (262)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=2.3e-46 Score=355.90 Aligned_cols=363 Identities=28% Similarity=0.492 Sum_probs=222.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc---------CCcCceeeecCCccccCCCCCCCCCCCCCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL---------KIYDHLQLHLPKQFCQLPYVPFPREYPAYP 81 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (395)
++|+|||||++|+++|+.|.+.|+++++||+.+.+||+|+. ..|+++.++.+..++.+++++++.+++.++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 68999999999999999999999999999999999999974 358899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCc--cccCceEEEEEEcCC---CCcEEEEEcc----EEEEeCEEEEeeCCCCCCCCCC--CCC
Q 039923 82 SGQQFITYMEAYANHFEIE--PLLGQEVQWAKYDAA---MGHWRVKTHE----YEFMCRWLIVATGENEVPVLPK--IPG 150 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~V~~v~~~~~---~~~~~v~~~~----~~~~~d~lVlAtG~~~~~~~p~--~~g 150 (395)
+.+++.+|++.+++++++. ++++++|+++++.++ .+.|+|++.+ ++..||+||+|||.++.|.+|. +||
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 9999999999999999986 689999999998754 2579998864 5668999999999999999995 999
Q ss_pred CCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeecccc-CCChhH-----HHHH
Q 039923 151 ISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKIL-GRSSFA-----ISVW 224 (395)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~-~~~~~~-----~~~~ 224 (395)
++.|.|.+.|+..+.++..+++|+|+|||+|.||+|+|.+++..+++|++..|++.|++|+... +.+... +..+
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~ 241 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSF 241 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------------------------
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998652 322211 1112
Q ss_pred HHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecCccEEecCeEEEe
Q 039923 225 LLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPGIQKFTAKGAEFV 304 (395)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~ 304 (395)
+...+|..+......... ......+..+....+....+.|..++++...+..|+|.++.+|++++++++.+.
T Consensus 242 l~~~lp~~~~~~~~~~~l--------~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~ 313 (531)
T PF00743_consen 242 LQKNLPESLSNWLLEKKL--------NKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFE 313 (531)
T ss_dssp -----------------------------------------------------------------EE-EEEE-SSEEEET
T ss_pred cccccccccccccccccc--------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 222233222211111100 001111111212222334566888999999999999999988999999999999
Q ss_pred CCcEe-cCcEEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCC-C--CCCCeEEEEecccc-cc--cchhhHHHHH
Q 039923 305 NRTVK-EFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNW-K--GKNGVYSVGFARQG-LL--GISMDAHKVA 377 (395)
Q Consensus 305 ~g~~i-~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~-~--~~~~iya~Gd~~~~-~~--~a~~~g~~~a 377 (395)
||+.+ ++|.||+||||+.+. .|+++.-+. . .++.+..- .+.. . ..|+|.++|-+... +. .+..|++++|
T Consensus 314 DGs~~e~vD~II~~TGY~~~f-pFL~~~~~~-~-~~~~~~LY-k~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a 389 (531)
T PF00743_consen 314 DGSTEEDVDVIIFCTGYKFSF-PFLDESLIK-V-DDNRVRLY-KHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAA 389 (531)
T ss_dssp TSEEEEE-SEEEE---EE----TTB-TTTT--S--SSSSSEE-TTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccc-ccccccccc-c-cccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 99875 799999999999998 555543232 1 23322211 1222 2 35899999987642 22 7889999999
Q ss_pred HHHHhhhc
Q 039923 378 DDIASQWN 385 (395)
Q Consensus 378 ~~i~~~~~ 385 (395)
+-+.+..+
T Consensus 390 ~v~sG~~~ 397 (531)
T PF00743_consen 390 RVFSGRVK 397 (531)
T ss_dssp HHHTTSS-
T ss_pred cccccccc
Confidence 98877753
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=2.8e-40 Score=310.67 Aligned_cols=312 Identities=23% Similarity=0.429 Sum_probs=243.1
Q ss_pred CCCCCCCCCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc--------------------CCcCceeee
Q 039923 1 MSSKAKRFWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL--------------------KIYDHLQLH 60 (395)
Q Consensus 1 m~~~~~~~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~--------------------~~~~~~~~~ 60 (395)
|.+..++...++|+|||||++|++||++|++.|+++++||+...+||+|.. ..|..++++
T Consensus 1 ~~~~~~~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn 80 (461)
T PLN02172 1 MAPAQNPINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTN 80 (461)
T ss_pred CCCcccCCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhcc
Confidence 666555555689999999999999999999999999999999999999964 247778888
Q ss_pred cCCccccCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCc--cccCceEEEEEEcCCCCcEEEEEcc-----E
Q 039923 61 LPKQFCQLPYVPFPRE-------YPAYPSGQQFITYMEAYANHFEIE--PLLGQEVQWAKYDAAMGHWRVKTHE-----Y 126 (395)
Q Consensus 61 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~v~~~~~~~~~~v~~~~-----~ 126 (395)
.|...+.+++++++.. .+.++...++.+|++.+++++++. ++++++|++++..+ +.|.|++.+ .
T Consensus 81 ~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~~~~ 158 (461)
T PLN02172 81 LPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGGFSK 158 (461)
T ss_pred CCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCCceE
Confidence 8988888888776432 356889999999999999999988 88999999999876 789998753 3
Q ss_pred EEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCc
Q 039923 127 EFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKV 206 (395)
Q Consensus 127 ~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~ 206 (395)
+..||+||+|||.++.|++|.+||++.+.+..+|++.++.+..+++++|+|||+|.+|+|+|..|...+++|++++|++
T Consensus 159 ~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~- 237 (461)
T PLN02172 159 DEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS- 237 (461)
T ss_pred EEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec-
Confidence 5689999999999889999999999999999999999999888999999999999999999999999999999999976
Q ss_pred eeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCC
Q 039923 207 HILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGE 286 (395)
Q Consensus 207 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (395)
...+. .+. . +...+
T Consensus 238 ~~~~~--------------------------------------~~~--~--------------------------~~~~~ 251 (461)
T PLN02172 238 ESDTY--------------------------------------EKL--P--------------------------VPQNN 251 (461)
T ss_pred ccccc--------------------------------------ccC--c--------------------------CCCCc
Confidence 11000 000 0 00112
Q ss_pred eEEecCccEEe-cCeEEEeCCcEecCcEEEEcCCCCCCCCccccccc-cccccCCCCCCCCCCCCC-CC-CCCeEEEEec
Q 039923 287 IKVVPGIQKFT-AKGAEFVNRTVKEFDSIILATGYRSNVSSWLKEAS-LFNQKNNNNPQDSYPKNW-KG-KNGVYSVGFA 362 (395)
Q Consensus 287 v~~~~~v~~~~-~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~~~~-l~~~~~~g~~~~~~~~~~-~~-~~~iya~Gd~ 362 (395)
+.+...|..+. +..+.+.||+.+++|.||+|||++++. .|++..+ +. .++ +.+.-=+.+.. .. .|+|+++|-.
T Consensus 252 v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~-pfL~~~~~i~-v~~-~~v~~Ly~~~f~~~~~p~LafiG~~ 328 (461)
T PLN02172 252 LWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHF-PFLETNGYMR-IDE-NRVEPLYKHVFPPALAPGLSFIGLP 328 (461)
T ss_pred eEECCcccceecCCeEEECCCCCccCCEEEECCcCCccc-cccCccccee-eCC-CcchhhHHhhcCCCCCCcEEEEecc
Confidence 33333344333 345889999999999999999999998 5665543 33 222 22210011222 23 4899999987
Q ss_pred ccccc--cchhhHHHHHHHHHhhh
Q 039923 363 RQGLL--GISMDAHKVADDIASQW 384 (395)
Q Consensus 363 ~~~~~--~a~~~g~~~a~~i~~~~ 384 (395)
..+.. .+..|++++|+-+.+++
T Consensus 329 ~~~~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 329 AMGIQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred ccccCchhHHHHHHHHHHHHcCCC
Confidence 54444 78889999999987775
No 3
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=285.07 Aligned_cols=353 Identities=29% Similarity=0.425 Sum_probs=259.5
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVP-SLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQF 86 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~-v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
...+||+|||||++|+++|++|.+.|.+ ++||||+..+||+|+..+|++++++.|..++.+++++++ +...++....+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccH
Confidence 4468999999999999999999999998 999999999999999999999999999999999999987 33555666668
Q ss_pred HHHHHHHHHHcCCc--cccCceEEEEEEcCCCCcEEEEEcc-E--EEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeec
Q 039923 87 ITYMEAYANHFEIE--PLLGQEVQWAKYDAAMGHWRVKTHE-Y--EFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHT 161 (395)
Q Consensus 87 ~~~~~~~~~~~~~~--~~~~~~V~~v~~~~~~~~~~v~~~~-~--~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~ 161 (395)
.+|+..+++++++. +.+++.|+.++++++...|+|++++ . ++.+|+||+|||.++.|.+|.++|.+.|.+..+|+
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS 164 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHS 164 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEch
Confidence 88888888888765 5778888889999888899999987 2 27799999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHH---HH
Q 039923 162 STYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDR---FL 238 (395)
Q Consensus 162 ~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 238 (395)
..+.+..++.+|+|+|||+|+||++++.+|.+.|++||++.|++.+.+|+...+........... .++...... +.
T Consensus 165 ~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 243 (443)
T COG2072 165 ADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRR-ALPAGWALRRGRVL 243 (443)
T ss_pred hcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhh-hCccceehhhhhhh
Confidence 99999999999999999999999999999999999999999999888888775543332222221 122221110 00
Q ss_pred HH---------------------hhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC-ccEE
Q 039923 239 LF---------------------CSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG-IQKF 296 (395)
Q Consensus 239 ~~---------------------~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~ 296 (395)
.. ....+.......++. +...+. ....+++...+..+......+++.+++. ++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~ 320 (443)
T COG2072 244 DALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVR-EDLGPD--YAPGDGRLVPDGDLFEAGASGDVEVVTEIIDRF 320 (443)
T ss_pred hhhhhhhcccccCCCchHHHHHhhhhhhhccccccChH-hhcCCC--CCccccccccccchhhhhhhcccceeecccccc
Confidence 00 000000000111110 011111 1233334555666777888888888877 6777
Q ss_pred ecCeEEEeCCcEecCcEEEEcCCCCCCCCcccccc-c-cccccCCCCCCCCCCCCCCCCCCeEEEEecccccc
Q 039923 297 TAKGAEFVNRTVKEFDSIILATGYRSNVSSWLKEA-S-LFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL 367 (395)
Q Consensus 297 ~~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~~~-~-l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~ 367 (395)
+..++..+++.+++.|.++.+||+..+.-...... + .. . .............+..|++|.++.-.....
T Consensus 321 ~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~~pn~~~~~~~~~~~~ 391 (443)
T COG2072 321 TEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDP-W-DKDAPLAYKGLALSGGPNLFLIGGPTKASG 391 (443)
T ss_pred CCcceecCCCccccceEEEecCCCchhheeeecccccccc-c-cccccceeccccccCCCceEEecCccCCcc
Confidence 77778777777799999999999998421222211 1 11 1 112223332345568899999998665544
No 4
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=6.3e-37 Score=277.25 Aligned_cols=283 Identities=24% Similarity=0.312 Sum_probs=209.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITYM 90 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (395)
+||+|||||++|+++|..|.+.|++|+|||+.. .||.|.... .+..++.+ +......++.+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 689999999999999999999999999999886 565443210 11111111 1223456889999
Q ss_pred HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCCCcC
Q 039923 91 EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVE 169 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~ 169 (395)
++++++++++++. ++|.+++..+ ..|.+++.+ .++.||+||+||| +.+..|.+||...+.....+.....+...
T Consensus 64 ~~~~~~~gv~~~~-~~v~~v~~~~--~~~~v~~~~~~~~~~d~liiAtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~ 138 (300)
T TIGR01292 64 KEQAVKFGAEIIY-EEVIKVDLSD--RPFKVKTGDGKEYTAKAVIIATG--ASARKLGIPGEDEFLGRGVSYCATCDGPF 138 (300)
T ss_pred HHHHHHcCCeEEE-EEEEEEEecC--CeeEEEeCCCCEEEeCEEEECCC--CCcccCCCCChhhcCCccEEEeeecChhh
Confidence 9999999999887 8899998866 677788766 7899999999999 67777888987765544444444444445
Q ss_pred CCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccch
Q 039923 170 FRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDT 249 (395)
Q Consensus 170 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (395)
..+++++|||+|.+|+|+|..|++.+++|+++.|.+ .+...
T Consensus 139 ~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~-~~~~~-------------------------------------- 179 (300)
T TIGR01292 139 FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD-KFRAE-------------------------------------- 179 (300)
T ss_pred cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc-ccCcC--------------------------------------
Confidence 578999999999999999999999999999999987 22110
Q ss_pred hhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcC-CeEEecC--ccEEecCe----EEEe-----CCcEecCcEEEEc
Q 039923 250 KQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSG-EIKVVPG--IQKFTAKG----AEFV-----NRTVKEFDSIILA 317 (395)
Q Consensus 250 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--v~~~~~~~----v~~~-----~g~~i~~D~vi~a 317 (395)
....+.+++. ++.+..+ +.++.... +.+. ++.++++|.+++|
T Consensus 180 --------------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a 233 (300)
T TIGR01292 180 --------------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIA 233 (300)
T ss_pred --------------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEe
Confidence 0011122222 4444433 44544332 3332 2357999999999
Q ss_pred CCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEeccc-ccc---cchhhHHHHHHHHHhhh
Q 039923 318 TGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQ-GLL---GISMDAHKVADDIASQW 384 (395)
Q Consensus 318 tG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~-~~~---~a~~~g~~~a~~i~~~~ 384 (395)
+|++|+. .+++.. +. .+++|++.+| +++++++|+||++|||+. .+. .|+.||+.+|.+|.++|
T Consensus 234 ~G~~~~~-~~l~~~-~~-~~~~g~i~v~-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 234 IGHEPNT-ELLKGL-LE-LDEGGYIVTD-EGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred eCCCCCh-HHHHHh-he-ecCCCcEEEC-CCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 9999997 566666 66 6788999998 668899999999999997 222 89999999999998764
No 5
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=269.20 Aligned_cols=287 Identities=23% Similarity=0.310 Sum_probs=225.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVP-SLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~-v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
+++||+||||||+|++||.++.+.+++ ++|+|+. ..||.... ......++ .++.-.+..++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~~~-------------~~~venyp---g~~~~~~g~~L~ 64 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQLTK-------------TTDVENYP---GFPGGILGPELM 64 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCcccc-------------ceeecCCC---CCccCCchHHHH
Confidence 368999999999999999999999998 5555554 44432111 00111221 223335678999
Q ss_pred HHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCCC
Q 039923 88 TYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNG 167 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~ 167 (395)
+.+.+++..+++++.. .+|.+++..+ ..|.|++++.++++++|||||| ..++.|.+||..+|++..++.+..|+.
T Consensus 65 ~~~~~~a~~~~~~~~~-~~v~~v~~~~--~~F~v~t~~~~~~ak~vIiAtG--~~~~~~~~~~e~e~~g~gv~yc~~cdg 139 (305)
T COG0492 65 EQMKEQAEKFGVEIVE-DEVEKVELEG--GPFKVKTDKGTYEAKAVIIATG--AGARKLGVPGEEEFEGKGVSYCATCDG 139 (305)
T ss_pred HHHHHHHhhcCeEEEE-EEEEEEeecC--ceEEEEECCCeEEEeEEEECcC--CcccCCCCCcchhhcCCceEEeeecCc
Confidence 9999999999998766 6777777665 3899999986699999999999 678888888877888889999999999
Q ss_pred cCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhcc
Q 039923 168 VEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLG 247 (395)
Q Consensus 168 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (395)
.+.++.|+|||||.+|+|-|..|.+.+++||+++|++ .+.+.+
T Consensus 140 -~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~-~~ra~~----------------------------------- 182 (305)
T COG0492 140 -FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD-EFRAEE----------------------------------- 182 (305)
T ss_pred -cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc-ccCcCH-----------------------------------
Confidence 8899999999999999999999999999999999998 342211
Q ss_pred chhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcC-CeEEecC--ccEEec---CeEEEeCCc----EecCcEEEEc
Q 039923 248 DTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSG-EIKVVPG--IQKFTA---KGAEFVNRT----VKEFDSIILA 317 (395)
Q Consensus 248 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--v~~~~~---~~v~~~~g~----~i~~D~vi~a 317 (395)
...+.+.+. ++.++.+ ++++.+ .++.+.+.. ++++|-++.+
T Consensus 183 -----------------------------~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~ 233 (305)
T COG0492 183 -----------------------------ILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIA 233 (305)
T ss_pred -----------------------------HHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEe
Confidence 112222222 5666655 777777 467777642 7899999999
Q ss_pred CCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc----cchhhHHHHHHHHHhhhccc
Q 039923 318 TGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL----GISMDAHKVADDIASQWNSE 387 (395)
Q Consensus 318 tG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~----~a~~~g~~~a~~i~~~~~~~ 387 (395)
+|..|+. .+++..+. ++++|++.++ +.++|++|||||+||++.... .|..+|..+|.++.+++...
T Consensus 234 iG~~p~~-~~~~~~~~--~~~~g~I~v~-~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 234 IGHLPNT-ELLKGLGV--LDENGYIVVD-EEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred cCCCCch-HHHhhccc--cCCCCcEEcC-CCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence 9999998 77777655 5699999999 569999999999999987754 89999999999999988654
No 6
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=3.6e-36 Score=273.91 Aligned_cols=294 Identities=19% Similarity=0.275 Sum_probs=217.7
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
+..+||+||||||+|++||..|.++|+++++||+. ..||.+.... ..+.++. .+......++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~----------~~~~~~~------~~~~~~~~~~~ 66 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT----------EVENWPG------DPNDLTGPLLM 66 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc----------eECCCCC------CCCCCCHHHHH
Confidence 34689999999999999999999999999999964 5666433210 1111111 12234557788
Q ss_pred HHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCCC
Q 039923 88 TYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNG 167 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~ 167 (395)
+++.+.+..++.+++.+ +|..++..+ +.|+++.+...+.||+||+||| +.++.|++||.+.+.+..++.+..++.
T Consensus 67 ~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~v~~~~~~~~~d~vilAtG--~~~~~~~i~g~~~~~~~~v~~~~~~~~ 141 (321)
T PRK10262 67 ERMHEHATKFETEIIFD-HINKVDLQN--RPFRLTGDSGEYTCDALIIATG--ASARYLGLPSEEAFKGRGVSACATCDG 141 (321)
T ss_pred HHHHHHHHHCCCEEEee-EEEEEEecC--CeEEEEecCCEEEECEEEECCC--CCCCCCCCCCHHHcCCCcEEEeecCCH
Confidence 99999998888876654 577787765 7787876556799999999999 678888999977666666777777676
Q ss_pred cCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhcc
Q 039923 168 VEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLG 247 (395)
Q Consensus 168 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (395)
....+++++|||+|.+|+|+|..|++.+++|++++|++ .+ +.+ . ..
T Consensus 142 ~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~-~~-~~~-~-----~~-------------------------- 187 (321)
T PRK10262 142 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD-GF-RAE-K-----IL-------------------------- 187 (321)
T ss_pred HHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC-cc-CCC-H-----HH--------------------------
Confidence 66789999999999999999999999999999999987 22 110 0 00
Q ss_pred chhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC-----eEEEeCC------cEecCcEE
Q 039923 248 DTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK-----GAEFVNR------TVKEFDSI 314 (395)
Q Consensus 248 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-----~v~~~~g------~~i~~D~v 314 (395)
...+.+.+++.+|++..+ +.+++++ ++.+.++ +++++|.|
T Consensus 188 ---------------------------~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~v 240 (321)
T PRK10262 188 ---------------------------IKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGL 240 (321)
T ss_pred ---------------------------HHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEE
Confidence 011233444556666654 6677654 3555432 37999999
Q ss_pred EEcCCCCCCCCccccccccccccCCCCCCCCC----CCCCCCCCCeEEEEecccccc----cchhhHHHHHHHHHhhhcc
Q 039923 315 ILATGYRSNVSSWLKEASLFNQKNNNNPQDSY----PKNWKGKNGVYSVGFARQGLL----GISMDAHKVADDIASQWNS 386 (395)
Q Consensus 315 i~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~----~~~~~~~~~iya~Gd~~~~~~----~a~~~g~~~a~~i~~~~~~ 386 (395)
++++|++|+. .++.. ++. . ++|++.+|. ++++|+.|||||+|||+.... .|+.+|..+|..|..++++
T Consensus 241 v~a~G~~p~~-~l~~~-~l~-~-~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 241 FVAIGHSPNT-AIFEG-QLE-L-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred EEEeCCccCh-hHhhc-ccc-c-cCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHh
Confidence 9999999998 44443 455 3 568787773 157899999999999996532 8999999999999999976
Q ss_pred cc
Q 039923 387 ET 388 (395)
Q Consensus 387 ~~ 388 (395)
..
T Consensus 317 ~~ 318 (321)
T PRK10262 317 LA 318 (321)
T ss_pred cc
Confidence 54
No 7
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=4.6e-36 Score=277.78 Aligned_cols=303 Identities=21% Similarity=0.264 Sum_probs=213.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccc-cc-CCcCceeeecCCccccCCCC--CCCCCCCC-CCCH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLW-KL-KIYDHLQLHLPKQFCQLPYV--PFPREYPA-YPSG 83 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~-~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ 83 (395)
.+||++|||+||+|..+|.++++.|.+|.++|+...+||+= .. |.+....+.....+..+... .+...... ..+-
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 46999999999999999999999999999999998888842 22 22222222211111111100 00000000 1122
Q ss_pred HHH-----------HHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc-cEEEEeCEEEEeeCCCCCCCCCCCCCC
Q 039923 84 QQF-----------ITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH-EYEFMCRWLIVATGENEVPVLPKIPGI 151 (395)
Q Consensus 84 ~~~-----------~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~-~~~~~~d~lVlAtG~~~~~~~p~~~g~ 151 (395)
.++ ....+.+.++.+++++.+ ...+.+ .+.+.|... .++++++++||||| ++|..|+++++
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G----~a~f~~-~~~v~V~~~~~~~~~a~~iiIATG--S~p~~~~~~~~ 155 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRG----EARFVD-PHTVEVTGEDKETITADNIIIATG--SRPRIPPGPGI 155 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEE----EEEECC-CCEEEEcCCCceEEEeCEEEEcCC--CCCcCCCCCCC
Confidence 222 223344555556665433 122322 144333332 28999999999999 89999999888
Q ss_pred CCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCCh
Q 039923 152 SEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPV 231 (395)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 231 (395)
+... +..+....... ..+++++|||||..|+|+|..+.+.|.+||+++|.+ +++|.++. .++..+...
T Consensus 156 ~~~~--~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~-----ei~~~~~~~--- 223 (454)
T COG1249 156 DGAR--ILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDP-----EISKELTKQ--- 223 (454)
T ss_pred CCCe--EEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCH-----HHHHHHHHH---
Confidence 7632 34444444444 689999999999999999999999999999999999 89998776 444433333
Q ss_pred hHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC----eEEEeC
Q 039923 232 DVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK----GAEFVN 305 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~ 305 (395)
++++.+.+..+ ++++... .+.+++
T Consensus 224 --------------------------------------------------l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~ 253 (454)
T COG1249 224 --------------------------------------------------LEKGGVKILLNTKVTAVEKKDDGVLVTLED 253 (454)
T ss_pred --------------------------------------------------HHhCCeEEEccceEEEEEecCCeEEEEEec
Confidence 33345555555 4455432 366777
Q ss_pred Cc--EecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHH
Q 039923 306 RT--VKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADD 379 (395)
Q Consensus 306 g~--~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~ 379 (395)
|+ .+++|.+++|+|.+|+++.+ +++.|++ +|++|++.+| .+++|++|||||+||+.+++. .|.+||+.+|++
T Consensus 254 g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~-~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~ 331 (454)
T COG1249 254 GEGGTIEADAVLVAIGRKPNTDGLGLENAGVE-LDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAEN 331 (454)
T ss_pred CCCCEEEeeEEEEccCCccCCCCCChhhcCce-ECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHH
Confidence 76 68999999999999999766 8888999 8999999999 888899999999999988876 999999999999
Q ss_pred HHh
Q 039923 380 IAS 382 (395)
Q Consensus 380 i~~ 382 (395)
|.+
T Consensus 332 i~g 334 (454)
T COG1249 332 IAG 334 (454)
T ss_pred HhC
Confidence 997
No 8
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=3.9e-35 Score=282.46 Aligned_cols=289 Identities=18% Similarity=0.234 Sum_probs=220.2
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
...+||+||||||+|+++|.+|++.|++++||++. +||.|... + .+..++.. ......++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~-~---------~~~~~~~~-------~~~~~~~l~ 269 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDT-M---------GIENFISV-------PETEGPKLA 269 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeecc-C---------cccccCCC-------CCCCHHHHH
Confidence 34689999999999999999999999999999864 78766421 0 00001111 124567899
Q ss_pred HHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCC
Q 039923 88 TYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKN 166 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~ 166 (395)
+++.+.+++++++++.+++|.+++..+ +.|.+++.+ ..+.||.||+||| +.++.|.+||..++.+..++.+..++
T Consensus 270 ~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~~~~g~~i~a~~vViAtG--~~~r~~~ipG~~~~~~~~v~~~~~~~ 345 (517)
T PRK15317 270 AALEEHVKEYDVDIMNLQRASKLEPAA--GLIEVELANGAVLKAKTVILATG--ARWRNMNVPGEDEYRNKGVAYCPHCD 345 (517)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEECCCCEEEcCEEEECCC--CCcCCCCCCCHHHhcCceEEEeeccC
Confidence 999999999999999999999998876 677787766 6899999999999 57788889997777666666665556
Q ss_pred CcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhc
Q 039923 167 GVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVL 246 (395)
Q Consensus 167 ~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (395)
.....+++|+|||+|.+|+|+|..|+..+++|+++.+++ .+.+. ..
T Consensus 346 ~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~-~l~~~-----------~~---------------------- 391 (517)
T PRK15317 346 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP-ELKAD-----------QV---------------------- 391 (517)
T ss_pred chhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc-ccccc-----------HH----------------------
Confidence 556688999999999999999999999999999999887 22110 00
Q ss_pred cchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhc-CCeEEecC--ccEEecC-----eEEEe---CC--cEecCcE
Q 039923 247 GDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKS-GEIKVVPG--IQKFTAK-----GAEFV---NR--TVKEFDS 313 (395)
Q Consensus 247 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~~~~~-----~v~~~---~g--~~i~~D~ 313 (395)
+.+.+.+ .+|.++.+ +.++.+. ++.+. ++ +++++|.
T Consensus 392 -------------------------------l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~ 440 (517)
T PRK15317 392 -------------------------------LQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEG 440 (517)
T ss_pred -------------------------------HHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCE
Confidence 0111111 24555544 4555443 24443 23 3599999
Q ss_pred EEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc----cchhhHHHHHHHHHhhhcccc
Q 039923 314 IILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL----GISMDAHKVADDIASQWNSET 388 (395)
Q Consensus 314 vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~----~a~~~g~~~a~~i~~~~~~~~ 388 (395)
+++++|++|++ .+++.. +. ++++|++.+| ++++|+.|||||+|||+..+. .|+.+|..+|.++..++.+..
T Consensus 441 v~~~~G~~p~~-~~l~~~-v~-~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~~ 515 (517)
T PRK15317 441 VFVQIGLVPNT-EWLKGT-VE-LNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRNS 515 (517)
T ss_pred EEEeECCccCc-hHHhhh-ee-eCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhcC
Confidence 99999999998 566655 66 7788999998 788899999999999987643 999999999999999987654
No 9
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=4.1e-35 Score=281.91 Aligned_cols=287 Identities=20% Similarity=0.284 Sum_probs=213.9
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
...+||+||||||+|++||..|++.|++|+||+. .+||.+.... .+..+... + .....++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~----------~~~~~~~~------~-~~~~~~l~ 270 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTV----------GIENLISV------P-YTTGSQLA 270 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCc----------Cccccccc------C-CCCHHHHH
Confidence 4569999999999999999999999999999985 4777654210 00000000 1 13457788
Q ss_pred HHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCC
Q 039923 88 TYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKN 166 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~ 166 (395)
+.+.+.+++++++++.+++|+.++..+ +.+.+++.+ ..+.||+||+||| +.++.|++||...+....++.+..++
T Consensus 271 ~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~v~~~~g~~i~~d~lIlAtG--a~~~~~~ipG~~~~~~~~v~~~~~~~ 346 (515)
T TIGR03140 271 ANLEEHIKQYPIDLMENQRAKKIETED--GLIVVTLESGEVLKAKSVIVATG--ARWRKLGVPGEKEYIGKGVAYCPHCD 346 (515)
T ss_pred HHHHHHHHHhCCeEEcCCEEEEEEecC--CeEEEEECCCCEEEeCEEEECCC--CCcCCCCCCCHHHcCCCeEEEeeccC
Confidence 999999999999999999999998765 567777765 6899999999999 56778888986555444444444444
Q ss_pred CcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhc
Q 039923 167 GVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVL 246 (395)
Q Consensus 167 ~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (395)
.....+++|+|||+|.+|+|+|..|+..+++||++++.+ .+... ..
T Consensus 347 ~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~-~l~~~-----------~~---------------------- 392 (515)
T TIGR03140 347 GPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD-ELKAD-----------KV---------------------- 392 (515)
T ss_pred hhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC-cCChh-----------HH----------------------
Confidence 444578999999999999999999999999999998876 22110 00
Q ss_pred cchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhc-CCeEEecC--ccEEecC-----eEEEeC---C--cEecCcE
Q 039923 247 GDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKS-GEIKVVPG--IQKFTAK-----GAEFVN---R--TVKEFDS 313 (395)
Q Consensus 247 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~~~~~-----~v~~~~---g--~~i~~D~ 313 (395)
+.+.++. .+|.+..+ +.++.+. ++.+.+ + +++++|.
T Consensus 393 -------------------------------l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~ 441 (515)
T TIGR03140 393 -------------------------------LQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDG 441 (515)
T ss_pred -------------------------------HHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCE
Confidence 1111221 24555543 5555443 255543 2 4689999
Q ss_pred EEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc----cchhhHHHHHHHHHhhhcc
Q 039923 314 IILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL----GISMDAHKVADDIASQWNS 386 (395)
Q Consensus 314 vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~----~a~~~g~~~a~~i~~~~~~ 386 (395)
|++++|..|+. .+++.. +. ++++|++.+| ++++|++|+|||+|||+..+. .|+.+|..+|..|.+++.+
T Consensus 442 vi~a~G~~Pn~-~~l~~~-~~-~~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 442 VFVQIGLVPNT-EWLKDA-VE-LNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred EEEEeCCcCCc-hHHhhh-cc-cCCCCeEEEC-CCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 99999999998 566655 66 7788999999 788899999999999987543 9999999999999998864
No 10
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=7.7e-35 Score=275.70 Aligned_cols=297 Identities=17% Similarity=0.252 Sum_probs=199.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc--CCcCceeeecCCc---cccCCCCCCC------CCCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL--KIYDHLQLHLPKQ---FCQLPYVPFP------REYP 78 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~--~~~~~~~~~~~~~---~~~~~~~~~~------~~~~ 78 (395)
.|||+||||||+|++||..+++.|.+|+|||+. .+||+..+ +.+.......... ......+... .++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 489999999999999999999999999999995 68886432 2221111100000 0000111100 0111
Q ss_pred CCC-CHH----HHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCC-CCCCCC
Q 039923 79 AYP-SGQ----QFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLP-KIPGIS 152 (395)
Q Consensus 79 ~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p-~~~g~~ 152 (395)
... ..+ .+.+.+...+++.+++++.++.+ ..++ +. |..++..+.||+||+||| ++|..| .+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~----~~~~-~~--v~v~~~~~~~d~vIiAtG--s~p~~p~~i~g~~ 151 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR----FTKD-GT--VEVNGRDYTAPHILIATG--GKPSFPENIPGAE 151 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE----EccC-CE--EEECCEEEEeCEEEEecC--CCCCCCCCCCCCc
Confidence 100 011 22233445556667877666433 1121 33 555567899999999999 788888 788864
Q ss_pred CCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChh
Q 039923 153 EFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVD 232 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
.. ..+..+.. ....+++++|||+|.+|+|+|..|+..|++||+++|.+ .+++..+. .+...
T Consensus 152 ~~----~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~-----~~~~~-------- 212 (450)
T TIGR01421 152 LG----TDSDGFFA-LEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDS-----MISET-------- 212 (450)
T ss_pred ee----EcHHHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCH-----HHHHH--------
Confidence 21 11212221 22247899999999999999999999999999999988 55554332 11111
Q ss_pred HHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC-----eEEEeC
Q 039923 233 VVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK-----GAEFVN 305 (395)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-----~v~~~~ 305 (395)
+.+.+++.+|.++.+ ++++... .+.+++
T Consensus 213 ---------------------------------------------~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~ 247 (450)
T TIGR01421 213 ---------------------------------------------ITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFED 247 (450)
T ss_pred ---------------------------------------------HHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECC
Confidence 223333445666654 5555431 255667
Q ss_pred C-cEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHH
Q 039923 306 R-TVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDI 380 (395)
Q Consensus 306 g-~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i 380 (395)
+ +.+++|.|++|+|++|+...+ ++..++. ++++|++.+| ++++|+.|+|||+|||+..+. .|..||+.+|++|
T Consensus 248 g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~-~~~~G~i~vd-~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i 325 (450)
T TIGR01421 248 GKSIDDVDELIWAIGRKPNTKGLGLENVGIK-LNEKGQIIVD-EYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERL 325 (450)
T ss_pred CcEEEEcCEEEEeeCCCcCcccCCccccCcE-ECCCCcEEeC-CCCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHH
Confidence 7 579999999999999998543 6777888 8899999999 678999999999999987655 8999999999999
Q ss_pred Hh
Q 039923 381 AS 382 (395)
Q Consensus 381 ~~ 382 (395)
.+
T Consensus 326 ~~ 327 (450)
T TIGR01421 326 FN 327 (450)
T ss_pred hc
Confidence 85
No 11
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=6.9e-35 Score=276.41 Aligned_cols=300 Identities=15% Similarity=0.154 Sum_probs=202.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc-CCcCce-eeecCCccc---cCCCCCCC-----CCCCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL-KIYDHL-QLHLPKQFC---QLPYVPFP-----REYPA 79 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~-~~~~~~-~~~~~~~~~---~~~~~~~~-----~~~~~ 79 (395)
.|||+||||||+|++||..+++.|++|+|+|+. .+||+... ...|.- .+....... ..+.+... -++..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 489999999999999999999999999999995 78885432 112211 110000000 00000000 00000
Q ss_pred C-----CCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCC
Q 039923 80 Y-----PSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEF 154 (395)
Q Consensus 80 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~ 154 (395)
. .....+.++++..+++.+++++.+ ++..++. ..+.+..++..+.||+||+||| ++|..|++||.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~----~~v~v~~~g~~~~~d~lIiATG--s~p~~p~i~G~~~~ 153 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP----NTVEVLQDGTTYTAKKILIAVG--GRPQKPNLPGHELG 153 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEecCCeEEEcCEEEEecC--CcCCCCCCCCccce
Confidence 0 011234556666677778887654 5555543 3344543447899999999999 78888889886431
Q ss_pred cccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHH
Q 039923 155 RGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVV 234 (395)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 234 (395)
..+..... ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ .++|..+. .+...
T Consensus 154 ----~~~~~~~~-l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~-----~~~~~---------- 212 (446)
T TIGR01424 154 ----ITSNEAFH-LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDD-----DMRAL---------- 212 (446)
T ss_pred ----echHHhhc-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCH-----HHHHH----------
Confidence 12111111 12357899999999999999999999999999999988 55543221 11111
Q ss_pred HHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEec--C--eEEEeCCcE
Q 039923 235 DRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTA--K--GAEFVNRTV 308 (395)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~--~v~~~~g~~ 308 (395)
+.+.+++.++++..+ +.+++. . .+.+.++++
T Consensus 213 -------------------------------------------l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~ 249 (446)
T TIGR01424 213 -------------------------------------------LARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEE 249 (446)
T ss_pred -------------------------------------------HHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcE
Confidence 122233345555544 555542 2 255667888
Q ss_pred ecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHHhh
Q 039923 309 KEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIASQ 383 (395)
Q Consensus 309 i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~~~ 383 (395)
+++|.+++|+|.+|+...+ ++..++. ++++|++.+| ++++|+.|||||+|||+.... .|..||+.+|++|.+.
T Consensus 250 i~~D~viva~G~~pn~~~l~l~~~g~~-~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 250 IVADVVLFATGRSPNTKGLGLEAAGVE-LNDAGAIAVD-EYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred eecCEEEEeeCCCcCCCcCCccccCeE-ECCCCcEEeC-CCCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 9999999999999998544 5677888 7889999998 778999999999999997654 8999999999999863
No 12
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=3.6e-35 Score=264.92 Aligned_cols=290 Identities=19% Similarity=0.228 Sum_probs=211.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERG--VPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQF 86 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g--~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
++++|||||||++|+.+|..|.+.. .++++||+..... +..+. ++ -..+..+.+++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~plL-------~e--------va~g~l~~~~i 59 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTPLL-------YE--------VATGTLSESEI 59 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cchhh-------hh--------hhcCCCChhhe
Confidence 4688999999999999999999974 8999999987321 11110 01 11233445566
Q ss_pred HHHHHHHHHHcC-CccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCC
Q 039923 87 ITYMEAYANHFE-IEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTY 164 (395)
Q Consensus 87 ~~~~~~~~~~~~-~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~ 164 (395)
.-.++..+++.+ +++. ..+|++|+.+. +. |++++ +.+.||+||+|+| +.+..+.+||..++....-...+.
T Consensus 60 ~~p~~~~~~~~~~v~~~-~~~V~~ID~~~--k~--V~~~~~~~i~YD~LVvalG--s~~~~fgi~G~~E~a~~lks~edA 132 (405)
T COG1252 60 AIPLRALLRKSGNVQFV-QGEVTDIDRDA--KK--VTLADLGEISYDYLVVALG--SETNYFGIPGAAEYAFGLKTLEDA 132 (405)
T ss_pred eccHHHHhcccCceEEE-EEEEEEEcccC--CE--EEeCCCccccccEEEEecC--CcCCcCCCCCHHHhCCCCCCHHHH
Confidence 666677777544 6655 44799999987 54 78877 8899999999999 788899999987653211111000
Q ss_pred -------------CCCcC--CCCCeEEEECCCcCHHHHHHHHhhCC-------------CeEEEEEecCceeeeccccCC
Q 039923 165 -------------KNGVE--FRASKVLVVGCGNSGMEISFDLCKNG-------------AQVSLVVRDKVHILPKKILGR 216 (395)
Q Consensus 165 -------------~~~~~--~~~~~v~VvG~G~~a~e~a~~l~~~g-------------~~V~~~~r~~~~~~p~~~~~~ 216 (395)
.+... ..-.+++|+|||.+|+|+|.+|.+.- .+|+++++.+ +++|....
T Consensus 133 ~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~ILp~~~~-- 209 (405)
T COG1252 133 LRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-RILPMFPP-- 209 (405)
T ss_pred HHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-hhccCCCH--
Confidence 00000 02247999999999999999998641 2899999999 88887554
Q ss_pred ChhHHHHHHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEec--Ccc
Q 039923 217 SSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVP--GIQ 294 (395)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~v~ 294 (395)
+.+....+ .+++.+|++.. .|+
T Consensus 210 ---~l~~~a~~-----------------------------------------------------~L~~~GV~v~l~~~Vt 233 (405)
T COG1252 210 ---KLSKYAER-----------------------------------------------------ALEKLGVEVLLGTPVT 233 (405)
T ss_pred ---HHHHHHHH-----------------------------------------------------HHHHCCCEEEcCCceE
Confidence 33332222 23334455554 499
Q ss_pred EEecCeEEEeCCcE-ecCcEEEEcCCCCCCCCccccc-cccccccCCCCCCCCCCCCCCCCCCeEEEEeccccc------
Q 039923 295 KFTAKGAEFVNRTV-KEFDSIILATGYRSNVSSWLKE-ASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGL------ 366 (395)
Q Consensus 295 ~~~~~~v~~~~g~~-i~~D~vi~atG~~~~~~~~~~~-~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~------ 366 (395)
+++++++.+.+|.+ |++|.+||++|.+++ .++++ .+++ .|..|++.+++.....++|+||++|||+..+
T Consensus 234 ~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~--~~~~~l~~~e-~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P 310 (405)
T COG1252 234 EVTPDGVTLKDGEEEIPADTVVWAAGVRAS--PLLKDLSGLE-TDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVP 310 (405)
T ss_pred EECCCcEEEccCCeeEecCEEEEcCCCcCC--hhhhhcChhh-hccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCC
Confidence 99999999999985 999999999999997 56777 3777 6888999999444457999999999998443
Q ss_pred c---cchhhHHHHHHHHHhhhccccc
Q 039923 367 L---GISMDAHKVADDIASQWNSETR 389 (395)
Q Consensus 367 ~---~a~~~g~~~a~~i~~~~~~~~~ 389 (395)
. .|..||..+|+||.+++.+...
T Consensus 311 ~tAQ~A~Qqg~~~a~ni~~~l~g~~l 336 (405)
T COG1252 311 PTAQAAHQQGEYAAKNIKARLKGKPL 336 (405)
T ss_pred ChhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 8999999999999999987543
No 13
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=3.2e-34 Score=277.63 Aligned_cols=289 Identities=22% Similarity=0.283 Sum_probs=209.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.+||+||||||||++||..|++.|++|+|||+. .+||.+.... ....++. .......++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~----------~i~~~pg-------~~~~~~~~l~~~ 65 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS----------EVVNYPG-------ILNTTGPELMQE 65 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc----------ccccCCC-------CcCCCHHHHHHH
Confidence 589999999999999999999999999999996 5777543210 0000111 012345688899
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCCCcC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVE 169 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~ 169 (395)
+++.+++++++++ +++|..++..+ ..+.+.+.+..+.+++||+||| +.++.|++||.+.+.+..++.+..++...
T Consensus 66 l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~~~g~~~a~~lVlATG--a~p~~~~ipG~~~~~~~~v~~~~~~~~~~ 140 (555)
T TIGR03143 66 MRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKTARGDYKTLAVLIATG--ASPRKLGFPGEEEFTGRGVAYCATCDGEF 140 (555)
T ss_pred HHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEecCCEEEEeEEEECCC--CccCCCCCCCHHHhCCceEEEEeecChhh
Confidence 9999999999874 67898888755 5566777666789999999999 67888899997655555555555555555
Q ss_pred CCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccch
Q 039923 170 FRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDT 249 (395)
Q Consensus 170 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (395)
..+++++|||+|.+|+|+|..|.+.|++|++++|.+ .+.... ...
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~-~~~~~~-------~~~--------------------------- 185 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP-DFTCAK-------LIA--------------------------- 185 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC-ccccCH-------HHH---------------------------
Confidence 679999999999999999999999999999999987 221100 000
Q ss_pred hhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecCe----EEE---eCCcE----ecCcE---
Q 039923 250 KQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAKG----AEF---VNRTV----KEFDS--- 313 (395)
Q Consensus 250 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~----v~~---~~g~~----i~~D~--- 313 (395)
.+.+...+|.++.+ |.++.+.+ +.+ .+|+. +++|.
T Consensus 186 -----------------------------~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~ 236 (555)
T TIGR03143 186 -----------------------------EKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTF 236 (555)
T ss_pred -----------------------------HHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccce
Confidence 00111124444433 55555432 122 24543 34676
Q ss_pred -EEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEeccccc----ccchhhHHHHHHHHHhhhcccc
Q 039923 314 -IILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGL----LGISMDAHKVADDIASQWNSET 388 (395)
Q Consensus 314 -vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~----~~a~~~g~~~a~~i~~~~~~~~ 388 (395)
|++++|+.|+. .+++. ++. ++++|++.+| .+++|+.|+|||+|||+... ..|+.||+.+|.+|.+++.+..
T Consensus 237 ~Vi~a~G~~Pn~-~l~~~-~l~-l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~~~~ 312 (555)
T TIGR03143 237 GVFVFVGYAPSS-ELFKG-VVE-LDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKELK 312 (555)
T ss_pred EEEEEeCCCCCh-hHHhh-hcc-cCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHHhhh
Confidence 99999999998 45544 566 7788999998 78889999999999997432 2899999999999999987654
Q ss_pred c
Q 039923 389 R 389 (395)
Q Consensus 389 ~ 389 (395)
.
T Consensus 313 ~ 313 (555)
T TIGR03143 313 E 313 (555)
T ss_pred h
Confidence 4
No 14
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.4e-34 Score=276.42 Aligned_cols=303 Identities=15% Similarity=0.141 Sum_probs=200.2
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEec---------CCCccccccc-CCcCceeeecCCccc----cCCCCCC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEK---------ESCLASLWKL-KIYDHLQLHLPKQFC----QLPYVPF 73 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~---------~~~~~g~~~~-~~~~~~~~~~~~~~~----~~~~~~~ 73 (395)
...|||+||||||+|+.+|..+++.|.+|+|||+ ...+||++.+ ..+|.-.+....... ....+..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 3458999999999999999999999999999996 3568886543 223221111010000 0000000
Q ss_pred CCCCCCCCCHHHHHH-----------HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCC
Q 039923 74 PREYPAYPSGQQFIT-----------YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGE 139 (395)
Q Consensus 74 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~ 139 (395)
........+...+.+ .++......+++++.+ ++..++. ..++|+..+ .++.||+||+|||
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~----~~v~V~~~~g~~~~~~~d~LIIATG- 176 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGP----NEVEVTQLDGTKLRYTAKHILIATG- 176 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEEeCCCcEEEEEcCEEEEecC-
Confidence 000000122223222 2334444456665433 3333322 556676655 3689999999999
Q ss_pred CCCCCCCCCCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChh
Q 039923 140 NEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSF 219 (395)
Q Consensus 140 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~ 219 (395)
++|..|++||.+.. ..+..... ....+++++|||+|.+|+|+|..+...|++|++++|.+ .+++..+.
T Consensus 177 -s~p~~p~ipG~~~~----~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~----- 244 (499)
T PLN02507 177 -SRAQRPNIPGKELA----ITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-LPLRGFDD----- 244 (499)
T ss_pred -CCCCCCCCCCccce----echHHhhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-CcCcccCH-----
Confidence 78888889986431 11211111 22347899999999999999999999999999999988 45443222
Q ss_pred HHHHHHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEe
Q 039923 220 AISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFT 297 (395)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~ 297 (395)
.+... +.+.+++.+|+++.+ |+++.
T Consensus 245 ~~~~~-----------------------------------------------------l~~~l~~~GI~i~~~~~V~~i~ 271 (499)
T PLN02507 245 EMRAV-----------------------------------------------------VARNLEGRGINLHPRTNLTQLT 271 (499)
T ss_pred HHHHH-----------------------------------------------------HHHHHHhCCCEEEeCCEEEEEE
Confidence 11111 122233345555544 55554
Q ss_pred c--Ce--EEEeCCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cc
Q 039923 298 A--KG--AEFVNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GI 369 (395)
Q Consensus 298 ~--~~--v~~~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a 369 (395)
. ++ +.+.+|+++++|.|++++|++|+...+ ++..++. ++++|++.+| ++++|+.|||||+|||+.... .|
T Consensus 272 ~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~-~~~~G~I~Vd-~~~~Ts~p~IyAiGDv~~~~~l~~~A 349 (499)
T PLN02507 272 KTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVE-LDKAGAVKVD-EYSRTNIPSIWAIGDVTNRINLTPVA 349 (499)
T ss_pred EeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcE-ECCCCcEecC-CCCcCCCCCEEEeeEcCCCCccHHHH
Confidence 3 22 555678889999999999999998544 5677888 7889999999 788999999999999997655 89
Q ss_pred hhhHHHHHHHHHhh
Q 039923 370 SMDAHKVADDIASQ 383 (395)
Q Consensus 370 ~~~g~~~a~~i~~~ 383 (395)
..||+.+|+||.+.
T Consensus 350 ~~qg~~aa~ni~g~ 363 (499)
T PLN02507 350 LMEGTCFAKTVFGG 363 (499)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999753
No 15
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.3e-34 Score=275.34 Aligned_cols=298 Identities=16% Similarity=0.199 Sum_probs=200.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc-CCcCceeeecCCccc----c-CCCCCCC-----CCCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL-KIYDHLQLHLPKQFC----Q-LPYVPFP-----REYP 78 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~-~~~~~~~~~~~~~~~----~-~~~~~~~-----~~~~ 78 (395)
.+||+||||||+|+++|..|++.|++|+|||+. .+||++.+ ...|...+....... . .+.+.+. .++.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 489999999999999999999999999999996 78886533 112211000000000 0 0000000 0111
Q ss_pred CCCC-----HHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCC
Q 039923 79 AYPS-----GQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISE 153 (395)
Q Consensus 79 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~ 153 (395)
.... .+.+.+.++..+.+.+++++.+ ++..++ . . +|++++++++||+||+||| ++|..|++||.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~--~--~v~~~g~~~~~d~lViATG--s~p~~p~i~g~~~ 153 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--A--H--TVEVNGERYTADHILIATG--GRPSIPDIPGAEY 153 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--C--C--EEEECCEEEEeCEEEEecC--CCCCCCCCCCcce
Confidence 0000 1122333444555667877655 344442 1 3 3555557899999999999 7888898888652
Q ss_pred CcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhH
Q 039923 154 FRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDV 233 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 233 (395)
..+...... ....+++++|||+|.+|+|+|..+.+.|++|+++++.+ .+++..+. .+..
T Consensus 154 ----~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~-----~~~~---------- 212 (450)
T PRK06116 154 ----GITSDGFFA-LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDP-----DIRE---------- 212 (450)
T ss_pred ----eEchhHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCH-----HHHH----------
Confidence 222222222 22357899999999999999999999999999999987 44443221 1111
Q ss_pred HHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEec--C---eEEEeCC
Q 039923 234 VDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTA--K---GAEFVNR 306 (395)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~---~v~~~~g 306 (395)
.+.+.+++.++++..+ |.++.. + .+.+.+|
T Consensus 213 -------------------------------------------~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g 249 (450)
T PRK06116 213 -------------------------------------------TLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDG 249 (450)
T ss_pred -------------------------------------------HHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCC
Confidence 1223333445666544 666643 2 2566788
Q ss_pred cEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHHh
Q 039923 307 TVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIAS 382 (395)
Q Consensus 307 ~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~~ 382 (395)
+++++|.|++|+|.+|+...+ ++..++. ++++|++.+| ++++|++|||||+|||+..+. .|..||+.+|++|.+
T Consensus 250 ~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~-~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 250 ETLTVDCLIWAIGREPNTDGLGLENAGVK-LNEKGYIIVD-EYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred cEEEeCEEEEeeCCCcCCCCCCchhcCce-ECCCCcEecC-CCCCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhC
Confidence 899999999999999998644 5667888 7889999999 778899999999999986544 999999999999986
Q ss_pred h
Q 039923 383 Q 383 (395)
Q Consensus 383 ~ 383 (395)
.
T Consensus 328 ~ 328 (450)
T PRK06116 328 N 328 (450)
T ss_pred C
Confidence 4
No 16
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=270.97 Aligned_cols=294 Identities=15% Similarity=0.180 Sum_probs=209.3
Q ss_pred CCCCCCCCCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCC
Q 039923 1 MSSKAKRFWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAY 80 (395)
Q Consensus 1 m~~~~~~~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (395)
|.+......+++|||||||++|+.+|.+|.+.+++|+|||+++..- |..+. + ....+.
T Consensus 1 ~~~~~~~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~l---~------------~~~~g~ 58 (424)
T PTZ00318 1 MRSRTARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPLL---P------------QTTTGT 58 (424)
T ss_pred CCCcccCCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhhH---H------------HhcccC
Confidence 4444444556899999999999999999987789999999987321 11000 0 001112
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE--------cc-EEEEeCEEEEeeCCCCCCCCCCCCCC
Q 039923 81 PSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT--------HE-YEFMCRWLIVATGENEVPVLPKIPGI 151 (395)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~--------~~-~~~~~d~lVlAtG~~~~~~~p~~~g~ 151 (395)
....++...++..+..+++++. ..+|++++..+ +.+.+.. ++ .++.||+||+||| +.+..|.+||.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~i-~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG--s~~~~~~ipG~ 133 (424)
T PTZ00318 59 LEFRSICEPVRPALAKLPNRYL-RAVVYDVDFEE--KRVKCGVVSKSNNANVNTFSVPYDKLVVAHG--ARPNTFNIPGV 133 (424)
T ss_pred CChHHhHHHHHHHhccCCeEEE-EEEEEEEEcCC--CEEEEecccccccccCCceEecCCEEEECCC--cccCCCCCCCH
Confidence 2334455556666666677654 56899999876 6655521 22 6899999999999 78888889987
Q ss_pred CCCcccEeecCCCCC---------------------C-cCCCCCeEEEECCCcCHHHHHHHHhh--------------CC
Q 039923 152 SEFRGRLLHTSTYKN---------------------G-VEFRASKVLVVGCGNSGMEISFDLCK--------------NG 195 (395)
Q Consensus 152 ~~~~~~~~~~~~~~~---------------------~-~~~~~~~v~VvG~G~~a~e~a~~l~~--------------~g 195 (395)
.++. .....+.+ . .....++++|||+|.+|+|+|.+|.+ .+
T Consensus 134 ~e~~---~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~ 210 (424)
T PTZ00318 134 EERA---FFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEE 210 (424)
T ss_pred HHcC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 5421 11111100 0 01123589999999999999999875 36
Q ss_pred CeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccC
Q 039923 196 AQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLD 275 (395)
Q Consensus 196 ~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 275 (395)
.+|+++++.+ .++|..+. ...
T Consensus 211 ~~Vtlv~~~~-~ll~~~~~-----~~~----------------------------------------------------- 231 (424)
T PTZ00318 211 CKVTVLEAGS-EVLGSFDQ-----ALR----------------------------------------------------- 231 (424)
T ss_pred CEEEEEcCCC-cccccCCH-----HHH-----------------------------------------------------
Confidence 8899999988 56553221 111
Q ss_pred hhhHhhhhcCCeEEecC--ccEEecCeEEEeCCcEecCcEEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCC-CC
Q 039923 276 DGAFAKIKSGEIKVVPG--IQKFTAKGAEFVNRTVKEFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNW-KG 352 (395)
Q Consensus 276 ~~~~~~~~~~~v~~~~~--v~~~~~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~-~~ 352 (395)
....+.+++.+|+++.+ |.+++++.+.+++|+++++|.+||++|.+|+ .+++.++++ .+++|++.+| ++++ ++
T Consensus 232 ~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~--~~~~~~~l~-~~~~G~I~Vd-~~l~~~~ 307 (424)
T PTZ00318 232 KYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG--PLTKQLKVD-KTSRGRISVD-DHLRVKP 307 (424)
T ss_pred HHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc--chhhhcCCc-ccCCCcEEeC-CCcccCC
Confidence 11233444556777754 8888888999999999999999999999997 467777888 7889999999 5666 68
Q ss_pred CCCeEEEEecccc-----cc---cchhhHHHHHHHHHhhhccc
Q 039923 353 KNGVYSVGFARQG-----LL---GISMDAHKVADDIASQWNSE 387 (395)
Q Consensus 353 ~~~iya~Gd~~~~-----~~---~a~~~g~~~a~~i~~~~~~~ 387 (395)
+|||||+|||+.. +. .|+.||..+|+||.+.+.++
T Consensus 308 ~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 308 IPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999963 21 78999999999999998765
No 17
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=3e-34 Score=271.20 Aligned_cols=282 Identities=19% Similarity=0.225 Sum_probs=198.7
Q ss_pred CCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKER--GVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~--g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
.+|||||||++|+.+|..|+++ +.+|+|||++++++ |..+.. +.+. . ......++...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~~l--------------p~~~--~--~~~~~~~~~~~ 61 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANCAL--------------PYYI--G--EVVEDRKYALA 61 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccCCc--------------chhh--c--CccCCHHHccc
Confidence 4899999999999999999987 57999999997544 111100 0000 0 00111222222
Q ss_pred HH-HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc----EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCC
Q 039923 89 YM-EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE----YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTST 163 (395)
Q Consensus 89 ~~-~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~----~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~ 163 (395)
+. +.+.++.+++++.+++|++++..+ +.+.+.... .++.||+||+||| +.|..|++++. .++....
T Consensus 62 ~~~~~~~~~~~i~v~~~~~V~~Id~~~--~~v~~~~~~~~~~~~~~yd~lviAtG--s~~~~~~~~~~-----~~~~~~~ 132 (438)
T PRK13512 62 YTPEKFYDRKQITVKTYHEVIAINDER--QTVTVLNRKTNEQFEESYDKLILSPG--ASANSLGFESD-----ITFTLRN 132 (438)
T ss_pred CCHHHHHHhCCCEEEeCCEEEEEECCC--CEEEEEECCCCcEEeeecCEEEECCC--CCCCCCCCCCC-----CeEEecC
Confidence 22 344456789998899999999877 665555432 3579999999999 67776665421 1122211
Q ss_pred CCCC-------cCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHH
Q 039923 164 YKNG-------VEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDR 236 (395)
Q Consensus 164 ~~~~-------~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (395)
+.+. ....+++++|||+|.+|+|+|..|.+.|++|+++++.+ .+++..+. ....
T Consensus 133 ~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~-----~~~~------------- 193 (438)
T PRK13512 133 LEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDA-----DMNQ------------- 193 (438)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCH-----HHHH-------------
Confidence 1111 12246899999999999999999999999999999988 55443221 1111
Q ss_pred HHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecCeEEEeCCcEecCcEE
Q 039923 237 FLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAKGAEFVNRTVKEFDSI 314 (395)
Q Consensus 237 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~v~~~~g~~i~~D~v 314 (395)
.+.+.+++.+|.++.+ |.++++..+.+.+|+++++|.|
T Consensus 194 ----------------------------------------~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~v 233 (438)
T PRK13512 194 ----------------------------------------PILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMI 233 (438)
T ss_pred ----------------------------------------HHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEE
Confidence 1233344456666644 7777777788888889999999
Q ss_pred EEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEeccccc-----------c--cchhhHHHHHHHHH
Q 039923 315 ILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGL-----------L--GISMDAHKVADDIA 381 (395)
Q Consensus 315 i~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~-----------~--~a~~~g~~~a~~i~ 381 (395)
++|+|++|+. .+++..++. ++++|++.+| ++++|+.|+|||+|||+... . .|..||+.+|+||.
T Consensus 234 l~a~G~~pn~-~~l~~~gl~-~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~ 310 (438)
T PRK13512 234 IEGVGTHPNS-KFIESSNIK-LDDKGFIPVN-DKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA 310 (438)
T ss_pred EECcCCCcCh-HHHHhcCcc-cCCCCcEEEC-CCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc
Confidence 9999999997 577778888 7888999998 67889999999999998521 1 57889999999998
Q ss_pred hh
Q 039923 382 SQ 383 (395)
Q Consensus 382 ~~ 383 (395)
+.
T Consensus 311 g~ 312 (438)
T PRK13512 311 GN 312 (438)
T ss_pred CC
Confidence 63
No 18
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=4.8e-34 Score=272.73 Aligned_cols=303 Identities=14% Similarity=0.162 Sum_probs=203.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccC-CcCceeeecC-CccccCCCC-CC-CCCCCCCCCHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK-IYDHLQLHLP-KQFCQLPYV-PF-PREYPAYPSGQQ 85 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~-~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~ 85 (395)
.+||+||||||+|+++|.+|++.|.+|+|||+...+||++... ..+...+... ..+..+... .+ ........+..+
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFAD 84 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHH
Confidence 4899999999999999999999999999999988899976432 2222111000 000000000 00 000011122233
Q ss_pred HH-----------HHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCCCCCCCC
Q 039923 86 FI-----------TYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEVPVLPKIPGI 151 (395)
Q Consensus 86 ~~-----------~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~p~~~g~ 151 (395)
+. +++.+.+.+.+++++.+. +..++ . ..+++...+ ..+.||+||+||| +.|..|++++.
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~--~--~~~~v~~~~g~~~~~~~d~lviATG--s~p~~p~~~~~ 157 (461)
T PRK05249 85 LLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD--P--HTVEVECPDGEVETLTADKIVIATG--SRPYRPPDVDF 157 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec--C--CEEEEEeCCCceEEEEcCEEEEcCC--CCCCCCCCCCC
Confidence 32 334455666677766542 33332 2 455666543 4799999999999 78888876664
Q ss_pred CCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCCh
Q 039923 152 SEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPV 231 (395)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 231 (395)
.. ..+.++..... ....+++++|||+|.+|+|+|..+++.|.+|+++++++ +++|..+. .+...
T Consensus 158 ~~--~~v~~~~~~~~-~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~~------- 221 (461)
T PRK05249 158 DH--PRIYDSDSILS-LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDD-----EISDA------- 221 (461)
T ss_pred CC--CeEEcHHHhhc-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCH-----HHHHH-------
Confidence 43 12333333322 23468999999999999999999999999999999988 66664332 11111
Q ss_pred hHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEe--cCe--EEEeC
Q 039923 232 DVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFT--AKG--AEFVN 305 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~~--v~~~~ 305 (395)
+.+.+++.++++..+ +.++. +.+ +.+.+
T Consensus 222 ----------------------------------------------l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~ 255 (461)
T PRK05249 222 ----------------------------------------------LSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKS 255 (461)
T ss_pred ----------------------------------------------HHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECC
Confidence 122233334555543 55554 223 44567
Q ss_pred CcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHH
Q 039923 306 RTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIA 381 (395)
Q Consensus 306 g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~ 381 (395)
|+++++|.|++|+|.+|+...+ ++..++. ++++|++.+| .+++|+.|+|||+|||+..+. .|..||+.+|.+|.
T Consensus 256 g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~-~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 256 GKKIKADCLLYANGRTGNTDGLNLENAGLE-ADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAV 333 (461)
T ss_pred CCEEEeCEEEEeecCCccccCCCchhhCcE-ecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHc
Confidence 8889999999999999998543 5677888 7889999998 788899999999999997654 89999999999998
Q ss_pred hh
Q 039923 382 SQ 383 (395)
Q Consensus 382 ~~ 383 (395)
+.
T Consensus 334 g~ 335 (461)
T PRK05249 334 GE 335 (461)
T ss_pred CC
Confidence 54
No 19
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=3.2e-34 Score=273.53 Aligned_cols=300 Identities=16% Similarity=0.200 Sum_probs=198.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc--CCcCceeeecCCccc---cCCCCCCCCCCCCCCCHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL--KIYDHLQLHLPKQFC---QLPYVPFPREYPAYPSGQ 84 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 84 (395)
++||+||||||+|+++|.+|++.|++|+|||+. .+||++.+ +......+....... ....+..........+-.
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 489999999999999999999999999999986 67775432 221111110000000 000000000000012223
Q ss_pred HHHH-----------HHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCC
Q 039923 85 QFIT-----------YMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGIS 152 (395)
Q Consensus 85 ~~~~-----------~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~ 152 (395)
.+.+ .+...+++. +++++.++.+. .+ ... ++.++.++.||+||+||| +.|..|++||.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~----~~-~~~--v~v~~~~~~~d~lViATG--s~p~~p~i~G~~ 154 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF----ES-PNT--VRVGGETLRAKRIFINTG--ARAAIPPIPGLD 154 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE----cc-CCE--EEECcEEEEeCEEEEcCC--CCCCCCCCCCCC
Confidence 3332 233344444 66666554331 11 133 555567899999999999 789999999976
Q ss_pred CCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChh
Q 039923 153 EFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVD 232 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
.. .++......+. ...+++++|||+|.+|+|+|..+.+.|++|+++++.+ +++|..+. .+...
T Consensus 155 ~~--~~~~~~~~~~~-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~-----~~~~~-------- 217 (463)
T PRK06370 155 EV--GYLTNETIFSL-DELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDE-----DVAAA-------- 217 (463)
T ss_pred cC--ceEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCH-----HHHHH--------
Confidence 52 23333333222 2357999999999999999999999999999999988 66654332 11111
Q ss_pred HHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC--e--EEEe--
Q 039923 233 VVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK--G--AEFV-- 304 (395)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~--v~~~-- 304 (395)
+.+.+++.++++..+ |.+++.. + +.+.
T Consensus 218 ---------------------------------------------l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~ 252 (463)
T PRK06370 218 ---------------------------------------------VREILEREGIDVRLNAECIRVERDGDGIAVGLDCN 252 (463)
T ss_pred ---------------------------------------------HHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeC
Confidence 122233345555544 5566532 2 3332
Q ss_pred -CCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHH
Q 039923 305 -NRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADD 379 (395)
Q Consensus 305 -~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~ 379 (395)
++.++++|.||+|+|.+|+...+ ++..++. ++++|++.+| ++++|+.|+|||+|||+.... .|..||+.+|+|
T Consensus 253 ~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~-~~~~G~i~vd-~~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~n 330 (463)
T PRK06370 253 GGAPEITGSHILVAVGRVPNTDDLGLEAAGVE-TDARGYIKVD-DQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAAN 330 (463)
T ss_pred CCceEEEeCEEEECcCCCcCCCCcCchhhCce-ECCCCcEeEC-cCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHH
Confidence 34579999999999999998545 6777888 7889999998 778999999999999987655 889999999999
Q ss_pred HHhh
Q 039923 380 IASQ 383 (395)
Q Consensus 380 i~~~ 383 (395)
|.+.
T Consensus 331 i~~~ 334 (463)
T PRK06370 331 LLDG 334 (463)
T ss_pred HhCC
Confidence 9864
No 20
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=4.7e-34 Score=265.56 Aligned_cols=281 Identities=22% Similarity=0.305 Sum_probs=198.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERG--VPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g--~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
+++|||||||+||+.+|..|++.+ .+|+||++++... |....+ + ..+......+++.
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~l--~------------~~~~~~~~~~~~~ 60 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPDL--S------------HVFSQGQRADDLT 60 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCcC--c------------HHHhCCCCHHHhh
Confidence 468999999999999999998874 5899999987321 211100 0 0001112233444
Q ss_pred H-HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCC
Q 039923 88 T-YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKN 166 (395)
Q Consensus 88 ~-~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~ 166 (395)
. ...+++++++++++.+++|++++... . .+++++..+.||+||+||| +.+..|++||.+. +.......+
T Consensus 61 ~~~~~~~~~~~gv~~~~~~~V~~id~~~--~--~v~~~~~~~~yd~LVlATG--~~~~~p~i~G~~~----v~~~~~~~~ 130 (377)
T PRK04965 61 RQSAGEFAEQFNLRLFPHTWVTDIDAEA--Q--VVKSQGNQWQYDKLVLATG--ASAFVPPIPGREL----MLTLNSQQE 130 (377)
T ss_pred cCCHHHHHHhCCCEEECCCEEEEEECCC--C--EEEECCeEEeCCEEEECCC--CCCCCCCCCCCce----EEEECCHHH
Confidence 3 34566778899999999999998765 4 3666678899999999999 6788888998653 222222111
Q ss_pred -----CcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHh
Q 039923 167 -----GVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFC 241 (395)
Q Consensus 167 -----~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (395)
.....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .+++.... ...
T Consensus 131 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~~~~----------------~~~-------- 185 (377)
T PRK04965 131 YRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLASLMP----------------PEV-------- 185 (377)
T ss_pred HHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccchhCC----------------HHH--------
Confidence 112357899999999999999999999999999999988 55443211 000
Q ss_pred hhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC----eEEEeCCcEecCcEEE
Q 039923 242 SRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK----GAEFVNRTVKEFDSII 315 (395)
Q Consensus 242 ~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g~~i~~D~vi 315 (395)
...+.+.+++.++++..+ |.++... .+.+.+|+++++|.+|
T Consensus 186 ---------------------------------~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI 232 (377)
T PRK04965 186 ---------------------------------SSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVI 232 (377)
T ss_pred ---------------------------------HHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEE
Confidence 011122333345555533 5665543 3677889999999999
Q ss_pred EcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc-------cchhhHHHHHHHHHhhh
Q 039923 316 LATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL-------GISMDAHKVADDIASQW 384 (395)
Q Consensus 316 ~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~-------~a~~~g~~~a~~i~~~~ 384 (395)
+|+|.+|+. .+.+..++. . ++| +.+| ++++|+.|+|||+|||+.... .|+.||+.+|+||.+.-
T Consensus 233 ~a~G~~p~~-~l~~~~gl~-~-~~g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 233 AAAGLRPNT-ALARRAGLA-V-NRG-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred ECcCCCcch-HHHHHCCCC-c-CCC-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 999999987 567777887 3 456 7777 688899999999999985432 68899999999998753
No 21
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.4e-34 Score=261.51 Aligned_cols=303 Identities=34% Similarity=0.577 Sum_probs=233.2
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccC--------C-cCceeeecCCccccCCCCCCCCCCC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK--------I-YDHLQLHLPKQFCQLPYVPFPREYP 78 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (395)
.+.++|+|||||+|||.+|+.|.+.|++++++||.+++||+|... . |..++++.|+.++.++++++++..+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 346899999999999999999999999999999999999999987 4 9999999999999999999998865
Q ss_pred CC-CCHHHHHHHHHHHHHHcCCc--cccCceEEEEEEcCCCCcEEEEEcc-----EEEEeCEEEEeeCCCCCCCCCCCCC
Q 039923 79 AY-PSGQQFITYMEAYANHFEIE--PLLGQEVQWAKYDAAMGHWRVKTHE-----YEFMCRWLIVATGENEVPVLPKIPG 150 (395)
Q Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~v~~~~~~~~~~v~~~~-----~~~~~d~lVlAtG~~~~~~~p~~~g 150 (395)
.+ ++..++.+|++.+|+.+++. ++++++|..++...+ +.|.|.+.+ ...-||.||+|||.+..|++|.++|
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 54 78889999999999999986 677888888877763 689998865 3789999999999986699999988
Q ss_pred --CCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC-ceeeeccccCCChhHHHHHHHh
Q 039923 151 --ISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK-VHILPKKILGRSSFAISVWLLK 227 (395)
Q Consensus 151 --~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~-~~~~p~~~~~~~~~~~~~~~~~ 227 (395)
.+.|.|...|+..+..+..+.+++|+|||+|.||+|++.+++..+++|++..+.. ....+....
T Consensus 163 ~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~~~------------- 229 (448)
T KOG1399|consen 163 PGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEIL------------- 229 (448)
T ss_pred CchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeeccccccccccee-------------
Confidence 6799999999999999999999999999999999999999999988998887510 011111000
Q ss_pred hCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecCccEEecCe-EEEeCC
Q 039923 228 WFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPGIQKFTAKG-AEFVNR 306 (395)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~-v~~~~g 306 (395)
..++..+..|+.+++.+ +.+.++
T Consensus 230 --------------------------------------------------------~~~~~~~~~i~~~~e~~~~~~~~~ 253 (448)
T KOG1399|consen 230 --------------------------------------------------------GENLWQVPSIKSFTEDGSVFEKGG 253 (448)
T ss_pred --------------------------------------------------------ecceEEccccccccCcceEEEcCc
Confidence 01344444477778887 444566
Q ss_pred cEecCcEEEEcCCCCCCCCccccccc--cccccCCCCCCCCCCCCCC--CCCCeEEEEecc-cccc-cchhhHHHHHHHH
Q 039923 307 TVKEFDSIILATGYRSNVSSWLKEAS--LFNQKNNNNPQDSYPKNWK--GKNGVYSVGFAR-QGLL-GISMDAHKVADDI 380 (395)
Q Consensus 307 ~~i~~D~vi~atG~~~~~~~~~~~~~--l~~~~~~g~~~~~~~~~~~--~~~~iya~Gd~~-~~~~-~a~~~g~~~a~~i 380 (395)
....+|.||+|||+.-.. .+++..+ .. .++...++-. +... -.+++..+|.-. ..+. ....|++++++-+
T Consensus 254 ~~~~~D~ii~ctgy~y~f-Pfl~~~~~~~~-~~~~~~pl~k--~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~ 329 (448)
T KOG1399|consen 254 PVERVDRIIFCTGYKYKF-PFLETLGLGTV-RDNIVGPLYK--KVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVL 329 (448)
T ss_pred eeEEeeeEEEeeeeEeec-ceeccCCceee-ccCcccchhe--eccchhhCccccccccCeeeEeecceehhhhhhHhhh
Confidence 788999999999999988 4554443 22 2222122221 1111 223433333222 1222 7788888888888
Q ss_pred Hhhh
Q 039923 381 ASQW 384 (395)
Q Consensus 381 ~~~~ 384 (395)
.+..
T Consensus 330 ~G~~ 333 (448)
T KOG1399|consen 330 EGRL 333 (448)
T ss_pred cCCC
Confidence 7764
No 22
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=5.1e-34 Score=270.65 Aligned_cols=296 Identities=16% Similarity=0.250 Sum_probs=198.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC-CcccccccCCcCceeeecCCccccCCCCCCCCCCCC-CCCHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES-CLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPA-YPSGQQFI 87 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 87 (395)
.+||+||||||+|+++|.+|++.|++|+|||+.+ .+||++..... .|......+... ..++.. ....+.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gc------ip~k~l~~~~~~-~~~~~~~~~~~~~~~ 75 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGC------IPTKTLVHDAQQ-HTDFVRAIQRKNEVV 75 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccc------cchHHHHHHhcc-CCCHHHHHHHHHHHH
Confidence 4899999999999999999999999999999976 47887643110 111110000000 001100 00112222
Q ss_pred HHHH-----HHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEee
Q 039923 88 TYME-----AYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLH 160 (395)
Q Consensus 88 ~~~~-----~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~ 160 (395)
++++ ...+..+++++.+ ++..++ . +.+.|++.+ .++.||+||+||| ++|..|++||.++..+ ++.
T Consensus 76 ~~~~~~~~~~~~~~~gv~~~~g-~~~~i~---~-~~~~v~~~~g~~~~~~d~lviATG--s~p~~p~i~G~~~~~~-v~~ 147 (441)
T PRK08010 76 NFLRNKNFHNLADMPNIDVIDG-QAEFIN---N-HSLRVHRPEGNLEIHGEKIFINTG--AQTVVPPIPGITTTPG-VYD 147 (441)
T ss_pred HHHHHhHHHHHhhcCCcEEEEE-EEEEec---C-CEEEEEeCCCeEEEEeCEEEEcCC--CcCCCCCCCCccCCCC-EEC
Confidence 3332 1122225555433 333332 2 455666654 4799999999999 7888899999865433 333
Q ss_pred cCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHH
Q 039923 161 TSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLF 240 (395)
Q Consensus 161 ~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (395)
...+.. ....+++++|||+|.+|+|+|..+.+.|.+|+++++++ .++|..+. .+...
T Consensus 148 ~~~~~~-~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~~---------------- 204 (441)
T PRK08010 148 STGLLN-LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDR-----DIADN---------------- 204 (441)
T ss_pred hhHhhc-ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCH-----HHHHH----------------
Confidence 333332 23467899999999999999999999999999999988 66665432 11111
Q ss_pred hhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC--eEE--EeCCcEecCcEE
Q 039923 241 CSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK--GAE--FVNRTVKEFDSI 314 (395)
Q Consensus 241 ~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~v~--~~~g~~i~~D~v 314 (395)
+.+.+++.+++++.+ |.+++.. .+. ++++ ++++|.+
T Consensus 205 -------------------------------------l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~v 246 (441)
T PRK08010 205 -------------------------------------IATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDAL 246 (441)
T ss_pred -------------------------------------HHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEE
Confidence 122333445555544 5665432 333 3344 6899999
Q ss_pred EEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHHhh
Q 039923 315 ILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIASQ 383 (395)
Q Consensus 315 i~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~~~ 383 (395)
++|+|.+|+...+ ++..++. ++++|++.+| ++++|+.|||||+|||+.... .|..+|+.++.+|.+.
T Consensus 247 l~a~G~~pn~~~l~~~~~gl~-~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 247 LIASGRQPATASLHPENAGIA-VNERGAIVVD-KYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred EEeecCCcCCCCcCchhcCcE-ECCCCcEEEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 9999999998543 4566888 7889999999 678999999999999998755 8899999999999763
No 23
>PLN02546 glutathione reductase
Probab=100.00 E-value=2.8e-34 Score=275.26 Aligned_cols=300 Identities=15% Similarity=0.199 Sum_probs=197.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecC---------CCcccc--cccCCcCceeeecCCccc---cCCCCCC-
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKE---------SCLASL--WKLKIYDHLQLHLPKQFC---QLPYVPF- 73 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~---------~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~- 73 (395)
..|||+|||||++|+.+|..+++.|.+|+|+|+. ..+||+ ++-|......+....... ....+..
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 3589999999999999999999999999999962 456773 222322211111000000 0000000
Q ss_pred -----CCCCCCCCC-----HHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCC
Q 039923 74 -----PREYPAYPS-----GQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVP 143 (395)
Q Consensus 74 -----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~ 143 (395)
.-+|..... ...+.+++...+++.+++++.+ +++.++. . +|..+++.+.||+|||||| ++|
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~----~--~V~v~G~~~~~D~LVIATG--s~p 228 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP----H--TVDVDGKLYTARNILIAVG--GRP 228 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC----C--EEEECCEEEECCEEEEeCC--CCC
Confidence 011111111 1234455566666777776644 3334432 2 2555667899999999999 788
Q ss_pred CCCCCCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHH
Q 039923 144 VLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISV 223 (395)
Q Consensus 144 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~ 223 (395)
..|++||.+.. ....... .....+++++|||+|.+|+|+|..|...+++|+++.+.+ .++|..+. ....
T Consensus 229 ~~P~IpG~~~v----~~~~~~l-~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~il~~~d~-----~~~~ 297 (558)
T PLN02546 229 FIPDIPGIEHA----IDSDAAL-DLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-KVLRGFDE-----EVRD 297 (558)
T ss_pred CCCCCCChhhc----cCHHHHH-hccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-ccccccCH-----HHHH
Confidence 99999986531 1221111 122357899999999999999999999999999999988 55554322 1111
Q ss_pred HHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEec---
Q 039923 224 WLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTA--- 298 (395)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--- 298 (395)
. +.+.+++.+|+++.+ +.++..
T Consensus 298 ~-----------------------------------------------------l~~~L~~~GV~i~~~~~v~~i~~~~~ 324 (558)
T PLN02546 298 F-----------------------------------------------------VAEQMSLRGIEFHTEESPQAIIKSAD 324 (558)
T ss_pred H-----------------------------------------------------HHHHHHHCCcEEEeCCEEEEEEEcCC
Confidence 1 122233345555544 455532
Q ss_pred Ce--EEEeCCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhh
Q 039923 299 KG--AEFVNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMD 372 (395)
Q Consensus 299 ~~--v~~~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~ 372 (395)
.. +.+.+++...+|.|++++|++|+...+ ++..+++ ++++|++.+| ++++|+.|||||+|||+.... .|..|
T Consensus 325 g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~-~d~~G~I~VD-~~l~Ts~p~IYAaGDv~~~~~l~~~A~~~ 402 (558)
T PLN02546 325 GSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVK-MDKNGAIEVD-EYSRTSVPSIWAVGDVTDRINLTPVALME 402 (558)
T ss_pred CEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCc-CCCCCcEeEC-CCceeCCCCEEEeeccCCCcccHHHHHHH
Confidence 22 333444445699999999999998544 5777888 7889999999 788999999999999997655 88999
Q ss_pred HHHHHHHHHhh
Q 039923 373 AHKVADDIASQ 383 (395)
Q Consensus 373 g~~~a~~i~~~ 383 (395)
|+.+|++|.+.
T Consensus 403 g~~~a~~i~g~ 413 (558)
T PLN02546 403 GGALAKTLFGN 413 (558)
T ss_pred HHHHHHHHcCC
Confidence 99999999864
No 24
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=7.3e-34 Score=283.93 Aligned_cols=282 Identities=17% Similarity=0.194 Sum_probs=204.4
Q ss_pred CCeEEECCChHHHHHHHHHHHc----CCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKER----GVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQF 86 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~----g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.+|||||+|++|+.+|..|.++ +++|+||++++.++ |....+. .. + .. ...+++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~--~~---~---------~~-~~~~~l 61 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLS--SY---F---------SH-HTAEEL 61 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcch--Hh---H---------cC-CCHHHc
Confidence 4899999999999999999875 47999999998653 3322211 00 0 00 112333
Q ss_pred HHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCC
Q 039923 87 ITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYK 165 (395)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~ 165 (395)
......+.++.+++++.+++|.+++... .. |++.+ ..+.||+|||||| +.|..|++||.+... ++....+.
T Consensus 62 ~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~--V~~~~G~~i~yD~LVIATG--s~p~~p~ipG~~~~~--v~~~rt~~ 133 (847)
T PRK14989 62 SLVREGFYEKHGIKVLVGERAITINRQE--KV--IHSSAGRTVFYDKLIMATG--SYPWIPPIKGSETQD--CFVYRTIE 133 (847)
T ss_pred cCCCHHHHHhCCCEEEcCCEEEEEeCCC--cE--EEECCCcEEECCEEEECCC--CCcCCCCCCCCCCCC--eEEECCHH
Confidence 3333455667799999999999998754 32 55555 7899999999999 789999999976422 12221211
Q ss_pred CC-----cCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHH
Q 039923 166 NG-----VEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLF 240 (395)
Q Consensus 166 ~~-----~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (395)
+. ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ +++|..... ..+
T Consensus 134 d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~ld~----~~~------------------ 190 (847)
T PRK14989 134 DLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQLDQ----MGG------------------ 190 (847)
T ss_pred HHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhcCH----HHH------------------
Confidence 11 12357899999999999999999999999999999988 555532210 111
Q ss_pred hhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC------eEEEeCCcEecCc
Q 039923 241 CSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK------GAEFVNRTVKEFD 312 (395)
Q Consensus 241 ~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~------~v~~~~g~~i~~D 312 (395)
..+.+.+++.+|+++.+ ++++.+. .+.+.+|+++++|
T Consensus 191 -----------------------------------~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D 235 (847)
T PRK14989 191 -----------------------------------EQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVD 235 (847)
T ss_pred -----------------------------------HHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcC
Confidence 11233344445666654 5666432 3677899999999
Q ss_pred EEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc-------cchhhHHHHHHHHHhh
Q 039923 313 SIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL-------GISMDAHKVADDIASQ 383 (395)
Q Consensus 313 ~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~-------~a~~~g~~~a~~i~~~ 383 (395)
.||+|+|++|+. .+++..++. ++++|++.+| ++++|+.|+|||+|||+.... .|..||+.+|++|.+.
T Consensus 236 ~Vv~A~G~rPn~-~L~~~~Gl~-~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~ 310 (847)
T PRK14989 236 FIVFSTGIRPQD-KLATQCGLA-VAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGS 310 (847)
T ss_pred EEEECCCcccCc-hHHhhcCcc-CCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCC
Confidence 999999999998 577788998 7889999999 788999999999999996532 6789999999999764
No 25
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.2e-33 Score=266.97 Aligned_cols=301 Identities=22% Similarity=0.260 Sum_probs=197.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc-CCcCceeeecCCcccc----CCCCCCCCCCCCCCCH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL-KIYDHLQLHLPKQFCQ----LPYVPFPREYPAYPSG 83 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 83 (395)
..|||+||||||+|+++|..|++.|++|+|||+.. +||++.. ...|+-.+........ ...+..... ......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 35899999999999999999999999999999986 9996543 2222211110111000 011110000 111233
Q ss_pred HHHHHH-----------HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc-c-EEEEeCEEEEeeCCCCCCCCCCCCC
Q 039923 84 QQFITY-----------MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH-E-YEFMCRWLIVATGENEVPVLPKIPG 150 (395)
Q Consensus 84 ~~~~~~-----------~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~-~-~~~~~d~lVlAtG~~~~~~~p~~~g 150 (395)
.++.++ ++..+++.+++++.+ +++.++ . ..+++... + .++.||+||+||| +.|..| ||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~--~--~~~~v~~~~~~~~~~~d~lViAtG--s~p~~~--pg 151 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVD--P--NTVRVMTEDGEQTYTAKNIILATG--SRPREL--PG 151 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--C--CEEEEecCCCcEEEEeCEEEEeCC--CCCCCC--CC
Confidence 444444 344555667776655 233332 1 44445532 2 6899999999999 566543 45
Q ss_pred CCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCC
Q 039923 151 ISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFP 230 (395)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~ 230 (395)
.+.....+.+..... .....+++++|||+|.+|+|+|..+.+.|.+||+++|.+ +++|..+. .+...
T Consensus 152 ~~~~~~~v~~~~~~~-~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~~------ 218 (462)
T PRK06416 152 IEIDGRVIWTSDEAL-NLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK-----EISKL------ 218 (462)
T ss_pred CCCCCCeEEcchHhh-CccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH-----HHHHH------
Confidence 432111222222222 223357899999999999999999999999999999988 66664322 11111
Q ss_pred hhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC--e--EEEe
Q 039923 231 VDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK--G--AEFV 304 (395)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~--v~~~ 304 (395)
+.+.+++.++.++.+ |.++... + +.+.
T Consensus 219 -----------------------------------------------l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~ 251 (462)
T PRK06416 219 -----------------------------------------------AERALKKRGIKIKTGAKAKKVEQTDDGVTVTLE 251 (462)
T ss_pred -----------------------------------------------HHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEE
Confidence 122233345666554 6666543 2 4445
Q ss_pred CC---cEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHH
Q 039923 305 NR---TVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVA 377 (395)
Q Consensus 305 ~g---~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a 377 (395)
++ +++++|.+|+|+|.+|+...+ ++..++. .+ +|++.+| ++++|+.|+|||+|||+..+. .|..||+.+|
T Consensus 252 ~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~-~~-~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa 328 (462)
T PRK06416 252 DGGKEETLEADYVLVAVGRRPNTENLGLEELGVK-TD-RGFIEVD-EQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAA 328 (462)
T ss_pred eCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCe-ec-CCEEeEC-CCCccCCCCEEEeeecCCCcchHHHHHHHHHHHH
Confidence 55 679999999999999998544 4677888 66 8999998 788899999999999986544 8999999999
Q ss_pred HHHHhh
Q 039923 378 DDIASQ 383 (395)
Q Consensus 378 ~~i~~~ 383 (395)
.+|.+.
T Consensus 329 ~ni~~~ 334 (462)
T PRK06416 329 EAIAGN 334 (462)
T ss_pred HHHcCC
Confidence 999864
No 26
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=3.1e-33 Score=266.12 Aligned_cols=285 Identities=19% Similarity=0.251 Sum_probs=197.1
Q ss_pred CeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 12 GPVIVGAGPSGLAAAACLKERG--VPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g--~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
+|||||||++|+++|..|++.+ .+|+|||+++.++ |..+ ..+.+. . ..+....++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------------~~~~~~--~--~~~~~~~~~~~~ 61 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------------GLPYFV--G--GFFDDPNTMIAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------------CCceEe--c--cccCCHHHhhcC
Confidence 6999999999999999999975 5899999987543 1000 000000 0 011222344444
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc--cEEEE--eCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH--EYEFM--CRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYK 165 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~--~~~~~--~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~ 165 (395)
..+.+++.+++++.+++|.+++.++ +.+.+... +..+. ||+||+||| +++..|++||.+.. .+.+...+.
T Consensus 62 ~~~~~~~~gv~~~~~~~V~~id~~~--~~v~~~~~~~~~~~~~~yd~lviAtG--~~~~~~~i~g~~~~--~v~~~~~~~ 135 (444)
T PRK09564 62 TPEEFIKSGIDVKTEHEVVKVDAKN--KTITVKNLKTGSIFNDTYDKLMIATG--ARPIIPPIKNINLE--NVYTLKSME 135 (444)
T ss_pred CHHHHHHCCCeEEecCEEEEEECCC--CEEEEEECCCCCEEEecCCEEEECCC--CCCCCCCCCCcCCC--CEEEECCHH
Confidence 4555667799988899999998876 66655542 34555 999999999 78888888887531 233333222
Q ss_pred CCc-------CCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHH
Q 039923 166 NGV-------EFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFL 238 (395)
Q Consensus 166 ~~~-------~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (395)
+.. ...+++++|||+|.+|+|+|..+.+.|++|+++.+.+ .+++.... ..+...
T Consensus 136 ~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~----~~~~~~-------------- 196 (444)
T PRK09564 136 DGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSFD----KEITDV-------------- 196 (444)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhcC----HHHHHH--------------
Confidence 111 1357899999999999999999999999999999887 45442111 011111
Q ss_pred HHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecCe---EEEeCCcEecCcE
Q 039923 239 LFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAKG---AEFVNRTVKEFDS 313 (395)
Q Consensus 239 ~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~---v~~~~g~~i~~D~ 313 (395)
+.+.+++.++++..+ |.++++.+ ....++.++++|.
T Consensus 197 ---------------------------------------l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~ 237 (444)
T PRK09564 197 ---------------------------------------MEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADV 237 (444)
T ss_pred ---------------------------------------HHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCE
Confidence 122223334555433 55554332 1223455799999
Q ss_pred EEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEeccccc-----------c--cchhhHHHHHHHH
Q 039923 314 IILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGL-----------L--GISMDAHKVADDI 380 (395)
Q Consensus 314 vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~-----------~--~a~~~g~~~a~~i 380 (395)
+++|+|+.|+. .+++..++. ++++|++.+| ++++|+.|||||+|||+..+ . .|..||+.+|+||
T Consensus 238 vi~a~G~~p~~-~~l~~~gl~-~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni 314 (444)
T PRK09564 238 VIVATGVKPNT-EFLEDTGLK-TLKNGAIIVD-EYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENL 314 (444)
T ss_pred EEECcCCCcCH-HHHHhcCcc-ccCCCCEEEC-CCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHh
Confidence 99999999997 678888888 7788999999 67789999999999998631 1 7899999999999
Q ss_pred Hhh
Q 039923 381 ASQ 383 (395)
Q Consensus 381 ~~~ 383 (395)
.+.
T Consensus 315 ~g~ 317 (444)
T PRK09564 315 AGR 317 (444)
T ss_pred cCC
Confidence 874
No 27
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=2.5e-33 Score=267.63 Aligned_cols=299 Identities=20% Similarity=0.283 Sum_probs=197.1
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc-CCcCceeeecCCcccc---CCCCCC-----CCCCCCC-
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL-KIYDHLQLHLPKQFCQ---LPYVPF-----PREYPAY- 80 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~-~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~- 80 (395)
|||+||||||+|+++|..+++.|.+|+|||+.. +||++.+ ...|.-.+........ ...+.. .-++...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 699999999999999999999999999999975 8887543 1122111000000000 000000 0011110
Q ss_pred CCHHHHHHH-----HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCCCCCCCCCCCCCC
Q 039923 81 PSGQQFITY-----MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVATGENEVPVLPKIPGISE 153 (395)
Q Consensus 81 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~~~~~p~~~g~~~ 153 (395)
...+++... +...+++.+++++.++ +..+ + .. +|+..+ ..+.||+||+||| +.|..|++||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~---~-~~--~v~v~~g~~~~~~~~lIiATG--s~p~~p~i~G~~~ 150 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFK---D-PK--TVKVDLGREVRGAKRFLIATG--ARPAIPPIPGLKE 150 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEc---c-CC--EEEEcCCeEEEEeCEEEEcCC--CCCCCCCCCCccc
Confidence 111222222 2344556677765442 2222 1 13 355544 4689999999999 7888999999765
Q ss_pred CcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhH
Q 039923 154 FRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDV 233 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 233 (395)
+. +++.....+. ...+++++|||+|.+|+|+|..|.+.|++|+++++.+ +++|..+. .+...
T Consensus 151 ~~--~~~~~~~~~~-~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~~--------- 212 (463)
T TIGR02053 151 AG--YLTSEEALAL-DRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEP-----EISAA--------- 212 (463)
T ss_pred Cc--eECchhhhCc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCH-----HHHHH---------
Confidence 32 2333232222 2346899999999999999999999999999999998 66665332 11111
Q ss_pred HHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC--e--EEEe---
Q 039923 234 VDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK--G--AEFV--- 304 (395)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~--v~~~--- 304 (395)
+.+.+++.+|++..+ |.++... . +.+.
T Consensus 213 --------------------------------------------l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~ 248 (463)
T TIGR02053 213 --------------------------------------------VEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPG 248 (463)
T ss_pred --------------------------------------------HHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCC
Confidence 122233334555544 5555432 1 3332
Q ss_pred CCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHH
Q 039923 305 NRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDI 380 (395)
Q Consensus 305 ~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i 380 (395)
+++++++|.|++|+|.+|+...+ ++..++. .+++|++.+| ++++|+.|+|||+|||+..+. .|..||+.+|.+|
T Consensus 249 ~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~-~~~~G~i~vd-~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni 326 (463)
T TIGR02053 249 GQGEVEADELLVATGRRPNTDGLGLEKAGVK-LDERGGILVD-ETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENA 326 (463)
T ss_pred CceEEEeCEEEEeECCCcCCCCCCccccCCE-ECCCCcEeEC-CCccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHh
Confidence 23579999999999999998645 6777888 7889999999 788999999999999998755 8999999999999
Q ss_pred Hhh
Q 039923 381 ASQ 383 (395)
Q Consensus 381 ~~~ 383 (395)
.+.
T Consensus 327 ~~~ 329 (463)
T TIGR02053 327 LGG 329 (463)
T ss_pred cCC
Confidence 864
No 28
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.6e-32 Score=261.76 Aligned_cols=294 Identities=17% Similarity=0.246 Sum_probs=194.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccc-------c-CCCCCCCCCCC---
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFC-------Q-LPYVPFPREYP--- 78 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~--- 78 (395)
.+||+||||||+|+++|..|++.|.+|+|||+. .+||+|.+ .++ .|...+ . ....++..++.
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n---~Gc---iPsk~l~~~a~~~~~~~~~~~~~g~~~~~ 78 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN---IGC---VPSKIMIRAAHIAHLRRESPFDDGLSAQA 78 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec---CCc---cccHHHHHHHHHHHHHhhccccCCcccCC
Confidence 589999999999999999999999999999996 69998764 222 222211 0 00000000110
Q ss_pred CCCCHHHHHHHHHHHHHH------------c-CCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCC
Q 039923 79 AYPSGQQFITYMEAYANH------------F-EIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEV 142 (395)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~ 142 (395)
...+...+.++.++.... + +++++.+ ++..++. ..+.|++.+ .+++||+||+||| ++
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~----~~~~V~~~~g~~~~~~~d~lViATG--s~ 151 (468)
T PRK14694 79 PVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE----RTLTVTLNDGGEQTVHFDRAFIGTG--AR 151 (468)
T ss_pred CccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC----CEEEEEecCCCeEEEECCEEEEeCC--CC
Confidence 112334444444333221 1 3443322 3444432 456777654 4799999999999 78
Q ss_pred CCCCCCCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHH
Q 039923 143 PVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAIS 222 (395)
Q Consensus 143 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~ 222 (395)
|..|++||++... ++++..... ....+++++|||+|.+|+|+|..|.+.|++|+++.+. .++|..+. .+.
T Consensus 152 p~~p~i~G~~~~~--~~~~~~~~~-l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~~~-----~~~ 221 (468)
T PRK14694 152 PAEPPVPGLAETP--YLTSTSALE-LDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQEDP-----AVG 221 (468)
T ss_pred CCCCCCCCCCCCc--eEcchhhhc-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCCCH-----HHH
Confidence 8999999976532 233322211 2235789999999999999999999999999999864 34443221 111
Q ss_pred HHHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC-
Q 039923 223 VWLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK- 299 (395)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~- 299 (395)
.. +.+.+++.+++++.+ +.++...
T Consensus 222 ~~-----------------------------------------------------l~~~l~~~GI~v~~~~~v~~i~~~~ 248 (468)
T PRK14694 222 EA-----------------------------------------------------IEAAFRREGIEVLKQTQASEVDYNG 248 (468)
T ss_pred HH-----------------------------------------------------HHHHHHhCCCEEEeCCEEEEEEEcC
Confidence 11 222333345555543 5555432
Q ss_pred -eEEE-eCCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhH
Q 039923 300 -GAEF-VNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDA 373 (395)
Q Consensus 300 -~v~~-~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g 373 (395)
.+.+ .++.++++|.|++|+|.+|+...+ ++..++. . ++|++.+| ++++|+.|+|||+|||+..+. .|..||
T Consensus 249 ~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~-~-~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G 325 (468)
T PRK14694 249 REFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVE-T-ERGAIRID-EHLQTTVSGIYAAGDCTDQPQFVYVAAAGG 325 (468)
T ss_pred CEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcc-c-CCCeEeeC-CCcccCCCCEEEEeecCCCcccHHHHHHHH
Confidence 2222 234479999999999999998443 3556776 3 67889888 778899999999999987765 899999
Q ss_pred HHHHHHHHhh
Q 039923 374 HKVADDIASQ 383 (395)
Q Consensus 374 ~~~a~~i~~~ 383 (395)
+.+|.+|.+.
T Consensus 326 ~~aa~~i~~~ 335 (468)
T PRK14694 326 SRAAINMTGG 335 (468)
T ss_pred HHHHHHhcCC
Confidence 9999999754
No 29
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.2e-32 Score=263.04 Aligned_cols=302 Identities=16% Similarity=0.195 Sum_probs=195.6
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccC-CcCceeeecCCccc----cCCCCCCCCCCCCCCC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK-IYDHLQLHLPKQFC----QLPYVPFPREYPAYPS 82 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 82 (395)
+..+||+|||||++|+++|..|++.|.+|++||+...+||+|.+. ..|...+..+..+. ..+.+.+....+ ..+
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~ 92 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAP-SID 92 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCC-ccC
Confidence 456999999999999999999999999999999988899988653 12222111111110 111111110001 112
Q ss_pred HHHHHHHHHHHHH------------Hc-CCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCCC
Q 039923 83 GQQFITYMEAYAN------------HF-EIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 83 ~~~~~~~~~~~~~------------~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~p 146 (395)
...+......... .. ++++..+ ...+.+. +.+.|...+ .++.||+|||||| +.|..|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G----~a~f~~~-~~v~v~~~~g~~~~~~~d~lViATG--s~p~~p 165 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG----YARFKDG-NTLVVRLHDGGERVLAADRCLIATG--STPTIP 165 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE----EEEEecC-CEEEEEeCCCceEEEEeCEEEEecC--CCCCCC
Confidence 2233222222111 11 3333222 1233332 566676544 4799999999999 789999
Q ss_pred CCCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHH
Q 039923 147 KIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLL 226 (395)
Q Consensus 147 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~ 226 (395)
++||.+... ......... ....+++++|||+|.+|+|+|..+.+.|++|+++.+. .+++..+. .+...
T Consensus 166 ~i~G~~~~~--~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~-----~~~~~-- 233 (479)
T PRK14727 166 PIPGLMDTP--YWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFREDP-----LLGET-- 233 (479)
T ss_pred CCCCcCccc--eecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCcchH-----HHHHH--
Confidence 999875421 122211111 1234789999999999999999999999999999874 34444322 11111
Q ss_pred hhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEe--cCe--
Q 039923 227 KWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFT--AKG-- 300 (395)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~~-- 300 (395)
+.+.+++.++++..+ ++++. +..
T Consensus 234 ---------------------------------------------------l~~~L~~~GV~i~~~~~V~~i~~~~~~~~ 262 (479)
T PRK14727 234 ---------------------------------------------------LTACFEKEGIEVLNNTQASLVEHDDNGFV 262 (479)
T ss_pred ---------------------------------------------------HHHHHHhCCCEEEcCcEEEEEEEeCCEEE
Confidence 122333345555544 55553 222
Q ss_pred EEEeCCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHH
Q 039923 301 AEFVNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKV 376 (395)
Q Consensus 301 v~~~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~ 376 (395)
+.+.++ ++++|.+++|+|+.|+...+ ++..++. ++++|++.+| ++++|+.|+|||+|||+..+. .|..||+.+
T Consensus 263 v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~-~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~a 339 (479)
T PRK14727 263 LTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVT-TDTSGAIVVN-PAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRA 339 (479)
T ss_pred EEEcCC-eEEeCEEEEccCCCCCccCCCchhhCce-ecCCCCEEEC-CCeecCCCCEEEeeecCCcchhhhHHHHHHHHH
Confidence 333344 69999999999999998544 5666888 7889999999 678999999999999997655 889999999
Q ss_pred HHHHHhh
Q 039923 377 ADDIASQ 383 (395)
Q Consensus 377 a~~i~~~ 383 (395)
|.+|.+.
T Consensus 340 a~~i~g~ 346 (479)
T PRK14727 340 GINMTGG 346 (479)
T ss_pred HHHHcCC
Confidence 9999864
No 30
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=9.5e-33 Score=269.98 Aligned_cols=300 Identities=16% Similarity=0.182 Sum_probs=194.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccC-CcCceeeecCCcc-ccCCCCCCCCCC---CCCCCHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK-IYDHLQLHLPKQF-CQLPYVPFPREY---PAYPSGQ 84 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~ 84 (395)
.|||+||||||+|+++|..|++.|.+|+|||++ .+||+|.+. ..|.-.+..+... ......++..++ ......+
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 589999999999999999999999999999997 899987542 1221111000000 000000110011 1112333
Q ss_pred HHHHHHHHHH------------HHc-CCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCCCCC
Q 039923 85 QFITYMEAYA------------NHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEVPVLPKI 148 (395)
Q Consensus 85 ~~~~~~~~~~------------~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~p~~ 148 (395)
.+.++.+... .++ ++++..+ ++..+ + ...+.|++.+ ++++||+||+||| ++|..|++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~---~-~~~~~v~~~~g~~~~~~~d~lviAtG--s~p~~p~i 249 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFK---D-DQTLIVRLNDGGERVVAFDRCLIATG--ASPAVPPI 249 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEe---c-CCEEEEEeCCCceEEEEcCEEEEcCC--CCCCCCCC
Confidence 4433322222 222 3444333 23322 2 2556666544 4799999999999 78899999
Q ss_pred CCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhh
Q 039923 149 PGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKW 228 (395)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~ 228 (395)
||.+... .+....... ....+++++|||+|.+|+|+|..|.+.|++|+++.|.+ +++..+. .+...
T Consensus 250 ~g~~~~~--~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d~-----~~~~~---- 315 (561)
T PRK13748 250 PGLKETP--YWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFREDP-----AIGEA---- 315 (561)
T ss_pred CCCCccc--eEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccCH-----HHHHH----
Confidence 9976521 122222111 12357899999999999999999999999999999854 4444322 11111
Q ss_pred CChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEec--Ce--EE
Q 039923 229 FPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTA--KG--AE 302 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~--v~ 302 (395)
+.+.+++.+|++..+ +.++.. .. +.
T Consensus 316 -------------------------------------------------l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~ 346 (561)
T PRK13748 316 -------------------------------------------------VTAAFRAEGIEVLEHTQASQVAHVDGEFVLT 346 (561)
T ss_pred -------------------------------------------------HHHHHHHCCCEEEcCCEEEEEEecCCEEEEE
Confidence 122333345555543 555532 22 23
Q ss_pred EeCCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHH
Q 039923 303 FVNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVAD 378 (395)
Q Consensus 303 ~~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~ 378 (395)
+.++ ++++|.|++++|++|+...+ ++..++. ++++|++.+| .+++|+.|||||+|||+..+. .|..+|+.+|.
T Consensus 347 ~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~-~~~~g~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~ 423 (561)
T PRK13748 347 TGHG-ELRADKLLVATGRAPNTRSLALDAAGVT-VNAQGAIVID-QGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAI 423 (561)
T ss_pred ecCC-eEEeCEEEEccCCCcCCCCcCchhcCce-ECCCCCEeEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHH
Confidence 3334 69999999999999998544 5677888 8889999998 788999999999999987765 89999999999
Q ss_pred HHHhh
Q 039923 379 DIASQ 383 (395)
Q Consensus 379 ~i~~~ 383 (395)
+|.+.
T Consensus 424 ~i~g~ 428 (561)
T PRK13748 424 NMTGG 428 (561)
T ss_pred HHcCC
Confidence 99753
No 31
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.9e-33 Score=264.11 Aligned_cols=295 Identities=20% Similarity=0.212 Sum_probs=191.6
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
...++|+||||||+|+++|.+|++.|++|+|||+...+||.+... ++.+. .+.+++.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~--------l~~~~~~ 194 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------------IPEFR--------LPKETVV 194 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------------CCCcc--------CCccHHH
Confidence 346899999999999999999999999999999998888865321 11111 1123456
Q ss_pred HHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCC-
Q 039923 88 TYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTY- 164 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~- 164 (395)
++..+.++++++++++++.|. .. ++.++ ..+.||.||+|||+ ..++.+++||.+.. + ++....+
T Consensus 195 ~~~~~~~~~~gv~i~~~~~v~--------~~--v~~~~~~~~~~~d~viiAtGa-~~~~~l~ipG~~~~-g-V~~~~~~l 261 (464)
T PRK12831 195 KKEIENIKKLGVKIETNVVVG--------KT--VTIDELLEEEGFDAVFIGSGA-GLPKFMGIPGENLN-G-VFSANEFL 261 (464)
T ss_pred HHHHHHHHHcCCEEEcCCEEC--------Cc--CCHHHHHhccCCCEEEEeCCC-CCCCCCCCCCcCCc-C-cEEHHHHH
Confidence 666677788899998887652 11 22233 34679999999995 25777888886531 1 1211111
Q ss_pred ------------CCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChh
Q 039923 165 ------------KNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVD 232 (395)
Q Consensus 165 ------------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
.+.....+++|+|||+|.+|+|+|..+.+.|++|+++.|++...+|.... .+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~-----e~----------- 325 (464)
T PRK12831 262 TRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVE-----EV----------- 325 (464)
T ss_pred HHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHH-----HH-----------
Confidence 11223468999999999999999999999999999999876212221100 00
Q ss_pred HHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhh--hcCCeE---EecC-ccEEecCe---EEE
Q 039923 233 VVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKI--KSGEIK---VVPG-IQKFTAKG---AEF 303 (395)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~---~~~~-v~~~~~~~---v~~ 303 (395)
. ...+.|+.. .+.....+.. +++++. +..- ....+..+ ...
T Consensus 326 --~------------~a~~eGV~i----------------~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~ 375 (464)
T PRK12831 326 --H------------HAKEEGVIF----------------DLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVE 375 (464)
T ss_pred --H------------HHHHcCCEE----------------EecccceEEEecCCCeEEEEEEEEEEecCcCCCCCcccee
Confidence 0 012223320 0000000000 001111 0000 00000000 011
Q ss_pred eCC--cEecCcEEEEcCCCCCCCCccccc-cccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHH
Q 039923 304 VNR--TVKEFDSIILATGYRSNVSSWLKE-ASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVA 377 (395)
Q Consensus 304 ~~g--~~i~~D~vi~atG~~~~~~~~~~~-~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a 377 (395)
.+| .++++|.||+++|+.|+. .++.. .++. ++++|++.+|...++|+.|+|||+|||..++. .|+.+|+.+|
T Consensus 376 ~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~-~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA 453 (464)
T PRK12831 376 IEGSEFVLEVDTVIMSLGTSPNP-LISSTTKGLK-INKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAA 453 (464)
T ss_pred cCCceEEEECCEEEECCCCCCCh-hhhcccCCce-ECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHH
Confidence 122 269999999999999997 56555 5787 78889999984448899999999999988765 8999999999
Q ss_pred HHHHhhhcc
Q 039923 378 DDIASQWNS 386 (395)
Q Consensus 378 ~~i~~~~~~ 386 (395)
.+|..+|.+
T Consensus 454 ~~I~~~L~~ 462 (464)
T PRK12831 454 KAIDEYLSK 462 (464)
T ss_pred HHHHHHhcC
Confidence 999999865
No 32
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=8.9e-33 Score=262.28 Aligned_cols=301 Identities=16% Similarity=0.179 Sum_probs=195.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHc-CCCEEEEecC--------CCccc--ccccCCcCceeeecCCcccc---CCCCCCCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKER-GVPSLIIEKE--------SCLAS--LWKLKIYDHLQLHLPKQFCQ---LPYVPFPR 75 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~-g~~v~lie~~--------~~~~g--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 75 (395)
.|||+||||||+|..+|..+++. |.+|+|||+. ..+|| +++-|.+....+........ ...+....
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~ 82 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEF 82 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeec
Confidence 58999999999999999999997 8999999984 46888 34444333322211111000 00000000
Q ss_pred C-CCCCCCHHHHHHH-----------HHHHHHH-cCCccccCceEEEEEEcCCCCcEEEEEc-------cEEEEeCEEEE
Q 039923 76 E-YPAYPSGQQFITY-----------MEAYANH-FEIEPLLGQEVQWAKYDAAMGHWRVKTH-------EYEFMCRWLIV 135 (395)
Q Consensus 76 ~-~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~V~~v~~~~~~~~~~v~~~-------~~~~~~d~lVl 135 (395)
. ......-..+.++ ....+++ .+++++.+. ....+ ...++|... .+.++||+|||
T Consensus 83 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~----a~f~~-~~~v~V~~~~~~~~~~~~~~~~d~lII 157 (486)
T TIGR01423 83 DRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW----GALED-KNVVLVRESADPKSAVKERLQAEHILL 157 (486)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE----EEEcc-CCEEEEeeccCCCCCcceEEECCEEEE
Confidence 0 0001121222222 2222333 255554332 12222 144444421 25799999999
Q ss_pred eeCCCCCCCCCCCCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhC---CCeEEEEEecCceeeecc
Q 039923 136 ATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKN---GAQVSLVVRDKVHILPKK 212 (395)
Q Consensus 136 AtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~---g~~V~~~~r~~~~~~p~~ 212 (395)
||| +.|..|++||.+.. ..+..... ....+++++|||+|.+|+|+|..+... |++||++++.+ .++|..
T Consensus 158 ATG--s~p~~p~i~G~~~~----~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~-~il~~~ 229 (486)
T TIGR01423 158 ATG--SWPQMLGIPGIEHC----ISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN-MILRGF 229 (486)
T ss_pred ecC--CCCCCCCCCChhhe----echhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC-cccccc
Confidence 999 78888999986531 22222111 223578999999999999999876544 89999999988 666654
Q ss_pred ccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC
Q 039923 213 ILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG 292 (395)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 292 (395)
+. .+... +.+.+++.+++++.+
T Consensus 230 d~-----~~~~~-----------------------------------------------------l~~~L~~~GI~i~~~ 251 (486)
T TIGR01423 230 DS-----TLRKE-----------------------------------------------------LTKQLRANGINIMTN 251 (486)
T ss_pred CH-----HHHHH-----------------------------------------------------HHHHHHHcCCEEEcC
Confidence 33 22222 222333345555544
Q ss_pred --ccEEec-----CeEEEeCCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEeccc
Q 039923 293 --IQKFTA-----KGAEFVNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQ 364 (395)
Q Consensus 293 --v~~~~~-----~~v~~~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~ 364 (395)
+.++.. ..+.+.+++++++|.+++|+|++|+...+ ++..++. ++++|++.+| ++++|+.|||||+|||+.
T Consensus 252 ~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~-~~~~G~I~Vd-~~l~Ts~~~IyA~GDv~~ 329 (486)
T TIGR01423 252 ENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVE-LTKKGAIQVD-EFSRTNVPNIYAIGDVTD 329 (486)
T ss_pred CEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCce-ECCCCCEecC-CCCcCCCCCEEEeeecCC
Confidence 555542 13566678889999999999999998543 4667888 7889999998 778899999999999998
Q ss_pred ccc---cchhhHHHHHHHHHhh
Q 039923 365 GLL---GISMDAHKVADDIASQ 383 (395)
Q Consensus 365 ~~~---~a~~~g~~~a~~i~~~ 383 (395)
.+. .|..||+.+|++|.+.
T Consensus 330 ~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 330 RVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred CcccHHHHHHHHHHHHHHHhCC
Confidence 765 8999999999999863
No 33
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=8.1e-33 Score=261.60 Aligned_cols=273 Identities=18% Similarity=0.213 Sum_probs=187.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+... ++. +....++.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip~---------~~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IPE---------FRLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CCC---------ccCCHHHHH
Confidence 35899999999999999999999999999999998888765321 111 111145555
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCC----
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTY---- 164 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~---- 164 (395)
...+.+.+.+++++.++.+. . .+++++....||+||+|||+ +.|+.|.+||.+. .+ +++...+
T Consensus 188 ~~~~~l~~~gv~~~~~~~v~--------~--~v~~~~~~~~yd~viiAtGa-~~p~~~~ipG~~~-~g-v~~~~~~l~~~ 254 (449)
T TIGR01316 188 TEIKTLKKLGVTFRMNFLVG--------K--TATLEELFSQYDAVFIGTGA-GLPKLMNIPGEEL-CG-VYSANDFLTRA 254 (449)
T ss_pred HHHHHHHhCCcEEEeCCccC--------C--cCCHHHHHhhCCEEEEeCCC-CCCCcCCCCCCCC-CC-cEEHHHHHHHH
Confidence 55566677799888776441 1 13333323469999999995 2678888888653 11 2221111
Q ss_pred --C--------CCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHH
Q 039923 165 --K--------NGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVV 234 (395)
Q Consensus 165 --~--------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 234 (395)
. ......+++|+|||+|.+|+|+|..+.+.|++||++.|++...++.. ....
T Consensus 255 ~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~----------~~~~-------- 316 (449)
T TIGR01316 255 NLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR----------VEEI-------- 316 (449)
T ss_pred hhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC----------HHHH--------
Confidence 0 11123679999999999999999999999999999999862111100 0000
Q ss_pred HHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEec--C----eEEEe--
Q 039923 235 DRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTA--K----GAEFV-- 304 (395)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~----~v~~~-- 304 (395)
..++..|+ .++.. +.++.. . ++.+.
T Consensus 317 ------------~~l~~~GV---------------------------------~~~~~~~~~~i~~~~~g~v~~v~~~~~ 351 (449)
T TIGR01316 317 ------------AHAEEEGV---------------------------------KFHFLCQPVEIIGDEEGNVRAVKFRKM 351 (449)
T ss_pred ------------HHHHhCCC---------------------------------EEEeccCcEEEEEcCCCeEEEEEEEEE
Confidence 01123333 22211 222211 0 11111
Q ss_pred -------C-----------CcEecCcEEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEeccccc
Q 039923 305 -------N-----------RTVKEFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGL 366 (395)
Q Consensus 305 -------~-----------g~~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~ 366 (395)
+ ..++++|.||+++|+.|+. .+++..++. ++++|++.+| ..++|+.|+|||+|||+.++
T Consensus 352 ~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~-~~l~~~gl~-~~~~G~i~vd-~~~~Ts~~~VfA~GD~~~g~ 428 (449)
T TIGR01316 352 DCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP-IMAETTRLK-TSERGTIVVD-EDQRTSIPGVFAGGDIILGA 428 (449)
T ss_pred EecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc-hhhhccCcc-cCCCCeEEeC-CCCccCCCCEEEecCCCCCc
Confidence 1 2369999999999999997 677777888 7888999998 67889999999999999776
Q ss_pred c---cchhhHHHHHHHHHhhh
Q 039923 367 L---GISMDAHKVADDIASQW 384 (395)
Q Consensus 367 ~---~a~~~g~~~a~~i~~~~ 384 (395)
. .|+.+|+.+|.+|..+|
T Consensus 429 ~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 429 ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 5 89999999999998765
No 34
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2e-32 Score=260.69 Aligned_cols=300 Identities=17% Similarity=0.205 Sum_probs=193.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc-CCcCce-eeecCCccc---cCCCCCCCCCCCCCCCHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL-KIYDHL-QLHLPKQFC---QLPYVPFPREYPAYPSGQ 84 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~-~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 84 (395)
+|||+||||||+|+.+|..|++.|.+|+|||+.+.+||+..+ ..+|.- .+.....+. ....+..... ....+-.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 82 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDID 82 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCHH
Confidence 589999999999999999999999999999998888986433 222221 111100000 0000000000 0011223
Q ss_pred HHHHHH-----------HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCC-CCCC
Q 039923 85 QFITYM-----------EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEVPVL-PKIP 149 (395)
Q Consensus 85 ~~~~~~-----------~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~-p~~~ 149 (395)
.+.++. ...+++.+++++.++ +..+ ++ +.+.|+..+ .++.||+||+||| ++|.. |.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~--~~--~~v~v~~~~g~~~~~~~d~lViATG--s~p~~~p~~~ 155 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFT--GG--NTLEVTGEDGKTTVIEFDNAIIAAG--SRPIQLPFIP 155 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cC--CEEEEecCCCceEEEEcCEEEEeCC--CCCCCCCCCC
Confidence 332222 234455577766442 2222 12 555565543 5799999999999 67763 4455
Q ss_pred CCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhC
Q 039923 150 GISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWF 229 (395)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~ 229 (395)
+... .++.+...... ...+++++|||+|.+|+|+|..+.+.|.+||++++.+ .++|..+. .+...+.
T Consensus 156 ~~~~---~v~~~~~~~~~-~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~-----~~~~~~~--- 222 (471)
T PRK06467 156 HDDP---RIWDSTDALEL-KEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADK-----DIVKVFT--- 222 (471)
T ss_pred CCCC---cEEChHHhhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCH-----HHHHHHH---
Confidence 4221 22333332222 2356899999999999999999999999999999998 67665432 2222111
Q ss_pred ChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEe--cCe--EEE
Q 039923 230 PVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFT--AKG--AEF 303 (395)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~~--v~~ 303 (395)
+.+++. +.+..+ |+++. +++ +.+
T Consensus 223 --------------------------------------------------~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~ 251 (471)
T PRK06467 223 --------------------------------------------------KRIKKQ-FNIMLETKVTAVEAKEDGIYVTM 251 (471)
T ss_pred --------------------------------------------------HHHhhc-eEEEcCCEEEEEEEcCCEEEEEE
Confidence 122222 444433 44443 222 333
Q ss_pred eCC----cEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHH
Q 039923 304 VNR----TVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHK 375 (395)
Q Consensus 304 ~~g----~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~ 375 (395)
.++ +++++|.|++++|++|+...+ ++..++. ++++|++.+| ++++|+.|+|||+|||+..+. .|..||+.
T Consensus 252 ~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~-~~~~G~I~Vd-~~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~ 329 (471)
T PRK06467 252 EGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVE-VDERGFIRVD-KQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHV 329 (471)
T ss_pred EeCCCcceEEEeCEEEEeecccccCCccChhhcCce-ECCCCcEeeC-CCcccCCCCEEEehhhcCCcccHHHHHHHHHH
Confidence 332 369999999999999998543 4566888 8899999998 788899999999999987654 89999999
Q ss_pred HHHHHHhh
Q 039923 376 VADDIASQ 383 (395)
Q Consensus 376 ~a~~i~~~ 383 (395)
+|++|.+.
T Consensus 330 aa~~i~g~ 337 (471)
T PRK06467 330 AAEVIAGK 337 (471)
T ss_pred HHHHHcCC
Confidence 99999864
No 35
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.3e-32 Score=261.05 Aligned_cols=303 Identities=19% Similarity=0.234 Sum_probs=193.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccC-CcCc-eeeecCCccc---cCCCCCCCCCCCCCCCHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK-IYDH-LQLHLPKQFC---QLPYVPFPREYPAYPSGQ 84 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~-~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 84 (395)
++||+||||||+|+++|.+|++.|.+|+|||+ ..+||+|... ..|. ..+.....+. ..+.+..... ....+..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence 48999999999999999999999999999999 6889976531 1111 0010000000 0111110000 1234556
Q ss_pred HHHHHHHHHHHHcCCcc----ccCceEEE----EEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcc
Q 039923 85 QFITYMEAYANHFEIEP----LLGQEVQW----AKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRG 156 (395)
Q Consensus 85 ~~~~~~~~~~~~~~~~~----~~~~~V~~----v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~ 156 (395)
++.++.++...++.-.+ .....|+- ....+. . .+..++.++.||+||+|||. . .|.+||.....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-~--~v~v~~~~~~~d~lIiATGs--~--~p~ipg~~~~~~ 153 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP-N--TVEVNGERIEAKNIVIATGS--R--VPPIPGVWLILG 153 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC-C--EEEECcEEEEeCEEEEeCCC--C--CCCCCCCcccCC
Confidence 66666665555432111 00011111 111111 2 24445578999999999994 4 566677643222
Q ss_pred cEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHH
Q 039923 157 RLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDR 236 (395)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (395)
..+............+++++|||+|.+|+|+|..|.+.|++|+++++.+ +++|..+. .+...
T Consensus 154 ~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~~------------ 215 (460)
T PRK06292 154 DRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDP-----EVSKQ------------ 215 (460)
T ss_pred CcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhH-----HHHHH------------
Confidence 2122222222223467999999999999999999999999999999988 56554222 11111
Q ss_pred HHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC---eEEE--eCC--c
Q 039923 237 FLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK---GAEF--VNR--T 307 (395)
Q Consensus 237 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~---~v~~--~~g--~ 307 (395)
+.+.+++. ++++.+ +.+++.. .+.+ .++ +
T Consensus 216 -----------------------------------------~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~ 253 (460)
T PRK06292 216 -----------------------------------------AQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTE 253 (460)
T ss_pred -----------------------------------------HHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceE
Confidence 12223333 555443 5555432 2432 233 4
Q ss_pred EecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHHhh
Q 039923 308 VKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIASQ 383 (395)
Q Consensus 308 ~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~~~ 383 (395)
++++|.+++++|.+|+...+ ++..++. ++++|++.+| ++++|+.|+|||+|||+..+. .|..||+.+|.+|.+.
T Consensus 254 ~i~~D~vi~a~G~~p~~~~l~l~~~g~~-~~~~g~i~vd-~~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 254 TIEADYVLVATGRRPNTDGLGLENTGIE-LDERGRPVVD-EHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred EEEeCEEEEccCCccCCCCCCcHhhCCE-ecCCCcEeEC-CCcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 79999999999999998543 5667888 7889999998 788899999999999997654 8999999999999874
No 36
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1e-31 Score=255.72 Aligned_cols=306 Identities=16% Similarity=0.153 Sum_probs=200.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc--CCcCceeeecCCccc---cCCCCCCCCC--CCCCCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL--KIYDHLQLHLPKQFC---QLPYVPFPRE--YPAYPS 82 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~ 82 (395)
|++|+|||||++|+.+|..+.+.|.+|++||+. .+||+... +.+....+....... ....+..... -....+
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 478999999999999999999999999999987 47874322 221111111000000 0000000000 000011
Q ss_pred HHH-----------HHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCCCCC
Q 039923 83 GQQ-----------FITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEVPVLPKI 148 (395)
Q Consensus 83 ~~~-----------~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~p~~ 148 (395)
-.. +.+.+++.+++++++++.+ ++..++...+...+.|++.+ .++.||+||+||| +.|..|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATG--s~p~~~p~ 156 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATG--ASPRILPT 156 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCC--CCCCCCCC
Confidence 111 2334445566678887655 34443311122566676543 3799999999999 67766554
Q ss_pred CCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhh
Q 039923 149 PGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKW 228 (395)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~ 228 (395)
++... ..+++.....+. ...+++++|||+|.+|+|+|..|++.|++|+++++.+ .++|..+. .....
T Consensus 157 ~~~~~--~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~~---- 223 (466)
T PRK07845 157 AEPDG--ERILTWRQLYDL-DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDA-----DAAEV---- 223 (466)
T ss_pred CCCCC--ceEEeehhhhcc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCH-----HHHHH----
Confidence 43321 123333333332 2356899999999999999999999999999999988 66665432 11111
Q ss_pred CChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEe--cCe--EE
Q 039923 229 FPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFT--AKG--AE 302 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~~--v~ 302 (395)
+.+.+++.+|++..+ +.+++ +++ +.
T Consensus 224 -------------------------------------------------l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~ 254 (466)
T PRK07845 224 -------------------------------------------------LEEVFARRGMTVLKRSRAESVERTGDGVVVT 254 (466)
T ss_pred -------------------------------------------------HHHHHHHCCcEEEcCCEEEEEEEeCCEEEEE
Confidence 122333445555544 55553 223 45
Q ss_pred EeCCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHH
Q 039923 303 FVNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVAD 378 (395)
Q Consensus 303 ~~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~ 378 (395)
+.+|+++++|.|++++|++|+...+ +++.+++ ++++|++.+| .+++|+.|||||+|||+.... .|..||..+|.
T Consensus 255 ~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~-~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~ 332 (466)
T PRK07845 255 LTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVE-LTPSGHITVD-RVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMY 332 (466)
T ss_pred ECCCcEEEecEEEEeecCCcCCCCCCchhhCce-ECCCCcEeEC-CCcccCCCCEEEEeeccCCccchhHHHHHHHHHHH
Confidence 5678899999999999999998543 5777888 7889999998 678899999999999997644 89999999999
Q ss_pred HHHhh
Q 039923 379 DIASQ 383 (395)
Q Consensus 379 ~i~~~ 383 (395)
+|.+.
T Consensus 333 ~i~g~ 337 (466)
T PRK07845 333 HALGE 337 (466)
T ss_pred HHcCC
Confidence 99864
No 37
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=1.4e-32 Score=261.53 Aligned_cols=279 Identities=20% Similarity=0.206 Sum_probs=192.0
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
...++|+|||||++|+++|..|++.|++|+|||+.+.+||.+... . +.+....++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------i---------p~~~~~~~~~ 193 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------I---------PEFRLPKDIV 193 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------C---------CCccCCHHHH
Confidence 345899999999999999999999999999999999888754321 0 1111224666
Q ss_pred HHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCC-
Q 039923 88 TYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKN- 166 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~- 166 (395)
++....+.+.+++++.++.+.. . +++++..+.||+||+|||++ .+..+++||.+. .+ +.+...+..
T Consensus 194 ~~~~~~l~~~gv~~~~~~~v~~--------~--v~~~~~~~~~d~vvlAtGa~-~~~~~~i~G~~~-~g-v~~~~~~l~~ 260 (457)
T PRK11749 194 DREVERLLKLGVEIRTNTEVGR--------D--ITLDELRAGYDAVFIGTGAG-LPRFLGIPGENL-GG-VYSAVDFLTR 260 (457)
T ss_pred HHHHHHHHHcCCEEEeCCEECC--------c--cCHHHHHhhCCEEEEccCCC-CCCCCCCCCccC-CC-cEEHHHHHHH
Confidence 7777777888999888876521 1 22223237799999999952 466667887653 11 222211110
Q ss_pred -------CcCCCCCeEEEECCCcCHHHHHHHHhhCCC-eEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHH
Q 039923 167 -------GVEFRASKVLVVGCGNSGMEISFDLCKNGA-QVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFL 238 (395)
Q Consensus 167 -------~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (395)
.....+++|+|||+|.+|+|+|..+.+.|. +|+++.|++...+|.... ..
T Consensus 261 ~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~----------~~------------ 318 (457)
T PRK11749 261 VNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE----------EV------------ 318 (457)
T ss_pred HhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH----------HH------------
Confidence 112368999999999999999999999987 899999876222221100 00
Q ss_pred HHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecCe-----EEE--------
Q 039923 239 LFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAKG-----AEF-------- 303 (395)
Q Consensus 239 ~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~-----v~~-------- 303 (395)
..+++.|+ ++..+ +.++.++. +.+
T Consensus 319 --------~~~~~~GV---------------------------------~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~ 357 (457)
T PRK11749 319 --------EHAKEEGV---------------------------------EFEWLAAPVEILGDEGRVTGVEFVRMELGEP 357 (457)
T ss_pred --------HHHHHCCC---------------------------------EEEecCCcEEEEecCCceEEEEEEEEEecCc
Confidence 01123333 33322 33332111 222
Q ss_pred -----------eCCcEecCcEEEEcCCCCCCCCccc-cccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---c
Q 039923 304 -----------VNRTVKEFDSIILATGYRSNVSSWL-KEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---G 368 (395)
Q Consensus 304 -----------~~g~~i~~D~vi~atG~~~~~~~~~-~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~ 368 (395)
.+++++++|.||+++|++|+. .++ ...++. ++++|++.+|+.+++|+.|+||++||++.++. .
T Consensus 358 ~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~-~l~~~~~gl~-~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~ 435 (457)
T PRK11749 358 DASGRRRVPIEGSEFTLPADLVIKAIGQTPNP-LILSTTPGLE-LNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVW 435 (457)
T ss_pred CCCCCcccCCCCceEEEECCEEEECccCCCCc-hhhccccCcc-CCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHH
Confidence 133479999999999999996 444 345777 78899999994478899999999999997654 8
Q ss_pred chhhHHHHHHHHHhhhcccc
Q 039923 369 ISMDAHKVADDIASQWNSET 388 (395)
Q Consensus 369 a~~~g~~~a~~i~~~~~~~~ 388 (395)
|+.+|+.+|.+|..+|.++.
T Consensus 436 A~~~G~~aA~~I~~~l~g~~ 455 (457)
T PRK11749 436 AVGDGKDAAEAIHEYLEGAA 455 (457)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998653
No 38
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=5.8e-32 Score=256.37 Aligned_cols=295 Identities=16% Similarity=0.205 Sum_probs=192.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC-cccccc--cCCcCceeeecCCccccCCCCCCCCCCCCCCC-HH-
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESC-LASLWK--LKIYDHLQLHLPKQFCQLPYVPFPREYPAYPS-GQ- 84 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~-~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 84 (395)
.+||+||||||+|+++|..|++.|.+|+|||++.. +||+.. .+......+..... ..++..... .+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~---------~~~~~~~~~~~~~ 73 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK---------NLSFEQVMATKNT 73 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc---------CCCHHHHHHHHHH
Confidence 48999999999999999999999999999999864 577421 11111111100000 001110000 11
Q ss_pred ---HHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEe
Q 039923 85 ---QFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLL 159 (395)
Q Consensus 85 ---~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~ 159 (395)
.+.....+...+.+++++.++ ... .+ +..+.++..+ .++.||+||+||| ++|..|++||.++.. .++
T Consensus 74 ~~~~~~~~~~~~~~~~gV~~~~g~-~~~---~~-~~~v~v~~~~~~~~~~~d~vViATG--s~~~~p~i~G~~~~~-~v~ 145 (438)
T PRK07251 74 VTSRLRGKNYAMLAGSGVDLYDAE-AHF---VS-NKVIEVQAGDEKIELTAETIVINTG--AVSNVLPIPGLADSK-HVY 145 (438)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEE-EEE---cc-CCEEEEeeCCCcEEEEcCEEEEeCC--CCCCCCCCCCcCCCC-cEE
Confidence 111222234445566655432 211 11 1444444322 5799999999999 688889999975432 233
Q ss_pred ecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHH
Q 039923 160 HTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLL 239 (395)
Q Consensus 160 ~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (395)
.+..+.. ....+++++|||+|.+|+|+|..+++.|.+|++++|.+ .++|..+. .+...
T Consensus 146 ~~~~~~~-~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~~--------------- 203 (438)
T PRK07251 146 DSTGIQS-LETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEP-----SVAAL--------------- 203 (438)
T ss_pred chHHHhc-chhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCH-----HHHHH---------------
Confidence 3333222 22357899999999999999999999999999999988 66665332 11111
Q ss_pred HhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC--eE-EEeCCcEecCcEE
Q 039923 240 FCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK--GA-EFVNRTVKEFDSI 314 (395)
Q Consensus 240 ~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~v-~~~~g~~i~~D~v 314 (395)
..+.+++.++++..+ +.+++.. .+ ...+++++++|.+
T Consensus 204 --------------------------------------~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~v 245 (438)
T PRK07251 204 --------------------------------------AKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDAL 245 (438)
T ss_pred --------------------------------------HHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEE
Confidence 122233334555543 5555432 23 3346778999999
Q ss_pred EEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHHhh
Q 039923 315 ILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIASQ 383 (395)
Q Consensus 315 i~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~~~ 383 (395)
++|+|.+|+...+ ++..++. .+++|++.+| ++++|+.|+|||+|||++++. .|..+|+.++.++.+.
T Consensus 246 iva~G~~p~~~~l~l~~~~~~-~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 246 LYATGRKPNTEPLGLENTDIE-LTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred EEeeCCCCCcccCCchhcCcE-ECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 9999999997543 4445676 6788999998 678899999999999998754 8888999999888754
No 39
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.4e-32 Score=259.04 Aligned_cols=302 Identities=20% Similarity=0.237 Sum_probs=187.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccc--ccCCcCceeeecCCccccCCC---CCCCCCCCCCCCHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLW--KLKIYDHLQLHLPKQFCQLPY---VPFPREYPAYPSGQ 84 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 84 (395)
.|||+||||||+|++||..+++.|.+|+|||+...+||+. .-+.+....+.....+..... ..+.-.......-.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 3899999999999999999999999999999877899953 222222211111111100000 00000000001112
Q ss_pred HHH-----------HHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCCCCCCC
Q 039923 85 QFI-----------TYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEVPVLPKIPG 150 (395)
Q Consensus 85 ~~~-----------~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~p~~~g 150 (395)
++. ...+...++.++++..+. ....+ ...+.+...+ .++.||+|||||| ++|. ++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~----a~~~~-~~~v~v~~~~g~~~~~~~d~lVIATG--s~p~--~ipg 153 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGW----GRLDG-VGKVVVKAEDGSETQLEAKDIVIATG--SEPT--PLPG 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE----EEEcc-CCEEEEEcCCCceEEEEeCEEEEeCC--CCCC--CCCC
Confidence 111 122233334455544332 12222 2455565443 4799999999999 5553 3566
Q ss_pred CCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCC
Q 039923 151 ISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFP 230 (395)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~ 230 (395)
.+.....+..+...... ...+++++|||+|.+|+|+|..+.+.|++|+++++.+ +++|..+. .....
T Consensus 154 ~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~-----~~~~~------ 220 (466)
T PRK06115 154 VTIDNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDT-----ETAKT------ 220 (466)
T ss_pred CCCCCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCH-----HHHHH------
Confidence 53211123333222221 2357999999999999999999999999999999988 66664322 11111
Q ss_pred hhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEec--CeE--EEe
Q 039923 231 VDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTA--KGA--EFV 304 (395)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~v--~~~ 304 (395)
+.+.+++.+|+++.+ +.++.. +++ .+.
T Consensus 221 -----------------------------------------------l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~ 253 (466)
T PRK06115 221 -----------------------------------------------LQKALTKQGMKFKLGSKVTGATAGADGVSLTLE 253 (466)
T ss_pred -----------------------------------------------HHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEE
Confidence 122333345555544 556653 232 222
Q ss_pred -----CCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHH
Q 039923 305 -----NRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHK 375 (395)
Q Consensus 305 -----~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~ 375 (395)
+++++++|.|++++|++|+...+ ++..++. .+++|. .+| .+++|+.|+|||+|||+..+. .|..||+.
T Consensus 254 ~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~-~~~~G~-~vd-~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~ 330 (466)
T PRK06115 254 PAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLE-TDKRGM-LAN-DHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVA 330 (466)
T ss_pred EcCCCceeEEEeCEEEEccCCccccccCCcccccce-eCCCCE-EEC-CCeecCCCCEEEeeecCCCcccHHHHHHHHHH
Confidence 23579999999999999998544 4556777 667785 455 578999999999999997765 89999999
Q ss_pred HHHHHHhh
Q 039923 376 VADDIASQ 383 (395)
Q Consensus 376 ~a~~i~~~ 383 (395)
+|++|.+.
T Consensus 331 aa~~i~~~ 338 (466)
T PRK06115 331 CIERIAGK 338 (466)
T ss_pred HHHHHcCC
Confidence 99999864
No 40
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.6e-32 Score=261.07 Aligned_cols=302 Identities=17% Similarity=0.213 Sum_probs=192.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC--------Ccccc-cccCCcCceeeecCCcccc-C----CCCCCCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES--------CLASL-WKLKIYDHLQLHLPKQFCQ-L----PYVPFPR 75 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~--------~~~g~-~~~~~~~~~~~~~~~~~~~-~----~~~~~~~ 75 (395)
+|||+||||||+|++||..+++.|.+|+|||+.. .+||+ .....+|.-.+........ . ..+.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~- 83 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK- 83 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC-
Confidence 5899999999999999999999999999999731 47884 2222222211100000000 0 001110
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCccccCceE---EEE----EEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCCCCCCC
Q 039923 76 EYPAYPSGQQFITYMEAYANHFEIEPLLGQEV---QWA----KYDAAMGHWRVKTHE--YEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V---~~v----~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~~~~~p 146 (395)
.....+..++.++++...++++..+....++ +-+ ...+ ...+.+...+ ..++||+|||||| +.|..|
T Consensus 84 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~-~~~v~v~~~~~~~~i~~d~lIIATG--s~p~~p 159 (499)
T PTZ00052 84 -TSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD-EHTVSYGDNSQEETITAKYILIATG--GRPSIP 159 (499)
T ss_pred -CCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc-CCEEEEeeCCCceEEECCEEEEecC--CCCCCC
Confidence 0112455677777777766654443322222 111 1221 1333333222 5799999999999 788877
Q ss_pred C-CCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHH
Q 039923 147 K-IPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWL 225 (395)
Q Consensus 147 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~ 225 (395)
. +||...+ ...+..... ....+++++|||+|.+|+|+|..|+..|++||++.++ .+++..+. .....
T Consensus 160 ~~i~G~~~~---~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d~-----~~~~~- 227 (499)
T PTZ00052 160 EDVPGAKEY---SITSDDIFS-LSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFDR-----QCSEK- 227 (499)
T ss_pred CCCCCccce---eecHHHHhh-hhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCCH-----HHHHH-
Confidence 4 8886532 122222221 1234679999999999999999999999999999874 33443322 11111
Q ss_pred HhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEec--C--
Q 039923 226 LKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTA--K-- 299 (395)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~-- 299 (395)
+.+.+++.+|+++.+ +.++.. .
T Consensus 228 ----------------------------------------------------l~~~l~~~GV~i~~~~~v~~v~~~~~~~ 255 (499)
T PTZ00052 228 ----------------------------------------------------VVEYMKEQGTLFLEGVVPINIEKMDDKI 255 (499)
T ss_pred ----------------------------------------------------HHHHHHHcCCEEEcCCeEEEEEEcCCeE
Confidence 222333344555544 344432 1
Q ss_pred eEEEeCCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccc-cc---cchhhHH
Q 039923 300 GAEFVNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQG-LL---GISMDAH 374 (395)
Q Consensus 300 ~v~~~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-~~---~a~~~g~ 374 (395)
.+.+.+|+++++|.|++++|++|+...+ ++..++. ++++|++.+++ . +|+.|+|||+|||+.+ +. .|..||+
T Consensus 256 ~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~-~~~~G~ii~~~-~-~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~ 332 (499)
T PTZ00052 256 KVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVH-VNKSNKIIAPN-D-CTNIPNIFAVGDVVEGRPELTPVAIKAGI 332 (499)
T ss_pred EEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcE-ECCCCCEeeCC-C-cCCCCCEEEEEEecCCCcccHHHHHHHHH
Confidence 3556788889999999999999998544 4677888 78889866553 3 8899999999999853 33 8999999
Q ss_pred HHHHHHHhh
Q 039923 375 KVADDIASQ 383 (395)
Q Consensus 375 ~~a~~i~~~ 383 (395)
.+|++|.+.
T Consensus 333 ~aa~ni~g~ 341 (499)
T PTZ00052 333 LLARRLFKQ 341 (499)
T ss_pred HHHHHHhCC
Confidence 999999864
No 41
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=6.4e-32 Score=255.62 Aligned_cols=295 Identities=17% Similarity=0.156 Sum_probs=189.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc--cccCCcCceeeecCCccccC---CCCCCCCCCCCCCCHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL--WKLKIYDHLQLHLPKQFCQL---PYVPFPREYPAYPSGQQ 85 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 85 (395)
||++||||||+|..+|.++ .|.+|+|||++ .+||+ ++-|.+....+......... +.+..... .....-.+
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~ 77 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWPD 77 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHHH
Confidence 7999999999999998764 59999999985 67883 33333322211111110000 00000000 00122333
Q ss_pred HHHHHHHHH-------------HHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCC
Q 039923 86 FITYMEAYA-------------NHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGI 151 (395)
Q Consensus 86 ~~~~~~~~~-------------~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~ 151 (395)
+.++.+... ++.+++++.+. .. ..+ .+. |++.+ +++.||+|||||| ++|..|++||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~---~~~-~~~--V~v~~g~~~~~d~lViATG--s~p~~p~i~g~ 148 (451)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-AR---FIG-PKT--LRTGDGEEITADQVVIAAG--SRPVIPPVIAD 148 (451)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EE---Eec-CCE--EEECCCCEEEeCEEEEcCC--CCCCCCCCCCc
Confidence 444333222 22344433321 11 112 133 55554 6899999999999 78899999886
Q ss_pred CCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCCh
Q 039923 152 SEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPV 231 (395)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 231 (395)
+.. . ++...........+++++|||+|.+|+|+|..+.+.|.+|++++|.+ .++|..+. .+...+
T Consensus 149 ~~~--~-~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~-----~~~~~l------ 213 (451)
T PRK07846 149 SGV--R-YHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDD-----DISERF------ 213 (451)
T ss_pred CCc--c-EEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCH-----HHHHHH------
Confidence 532 1 22222111223357899999999999999999999999999999988 55554322 111110
Q ss_pred hHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC--e--EEEeC
Q 039923 232 DVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK--G--AEFVN 305 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~--v~~~~ 305 (395)
.+.+ +.++.++.+ +.+++.. + +.+.+
T Consensus 214 -----------------------------------------------~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~ 245 (451)
T PRK07846 214 -----------------------------------------------TELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDD 245 (451)
T ss_pred -----------------------------------------------HHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECC
Confidence 1111 123555443 5555432 2 55667
Q ss_pred CcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHH
Q 039923 306 RTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIA 381 (395)
Q Consensus 306 g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~ 381 (395)
|+++++|.|++|+|++|+.+.+ ++..++. ++++|++.+| ++++|+.|+|||+|||+..+. .|..||+.+|+||.
T Consensus 246 g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~-~~~~G~i~Vd-~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~ 323 (451)
T PRK07846 246 GSTVEADVLLVATGRVPNGDLLDAAAAGVD-VDEDGRVVVD-EYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLL 323 (451)
T ss_pred CcEeecCEEEEEECCccCccccCchhcCce-ECCCCcEeEC-CCcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHc
Confidence 8899999999999999998443 4567888 7889999999 788899999999999997654 89999999999998
Q ss_pred hh
Q 039923 382 SQ 383 (395)
Q Consensus 382 ~~ 383 (395)
+.
T Consensus 324 ~~ 325 (451)
T PRK07846 324 HP 325 (451)
T ss_pred CC
Confidence 64
No 42
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-31 Score=255.92 Aligned_cols=303 Identities=17% Similarity=0.180 Sum_probs=189.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccC-CcCc-eeeecCCcc--cc--CCCCCCCCCCCCCCCH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK-IYDH-LQLHLPKQF--CQ--LPYVPFPREYPAYPSG 83 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~-~~~~-~~~~~~~~~--~~--~~~~~~~~~~~~~~~~ 83 (395)
.+||+||||||+|++||.+|++.|.+|+|||++ .+||+.... ..|. ..+...... .. ...+.... ....+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~--~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG--EVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc--CcccCH
Confidence 489999999999999999999999999999985 677754321 1121 111000000 00 00000000 001122
Q ss_pred HHHHHHHHHHHHHc--CCcccc-CceEEEEEE----cCCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCCCCCCCCCC
Q 039923 84 QQFITYMEAYANHF--EIEPLL-GQEVQWAKY----DAAMGHWRVKTHE---YEFMCRWLIVATGENEVPVLPKIPGISE 153 (395)
Q Consensus 84 ~~~~~~~~~~~~~~--~~~~~~-~~~V~~v~~----~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~p~~~g~~~ 153 (395)
..+....++...+. ++.... ...|+.++. .+ .+.+.+...+ +++.||+||+||| +.|..| ||.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~-~~~v~v~~~~g~~~~~~~d~lViATG--s~p~~~--pg~~~ 155 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTD-ANTLEVDLNDGGTETVTFDNAIIATG--SSTRLL--PGTSL 155 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcC-CCEEEEEecCCCeeEEEcCEEEEeCC--CCCCCC--CCCCC
Confidence 22332222221111 111111 112333331 11 2555555433 5799999999999 666654 55431
Q ss_pred CcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhH
Q 039923 154 FRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDV 233 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 233 (395)
...++....... ....+++++|||+|.+|+|+|..+++.|.+|+++++.+ +++|..+. .....
T Consensus 156 -~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~-----~~~~~--------- 218 (466)
T PRK07818 156 -SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDA-----EVSKE--------- 218 (466)
T ss_pred -CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCH-----HHHHH---------
Confidence 122333222111 12357899999999999999999999999999999988 66665432 12221
Q ss_pred HHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecCe----EEEe--C
Q 039923 234 VDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAKG----AEFV--N 305 (395)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~----v~~~--~ 305 (395)
+.+.+++.+|++..+ |++++..+ +.+. +
T Consensus 219 --------------------------------------------l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~ 254 (466)
T PRK07818 219 --------------------------------------------IAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKD 254 (466)
T ss_pred --------------------------------------------HHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecC
Confidence 122333345555544 66665432 3343 5
Q ss_pred C--cEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHH
Q 039923 306 R--TVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADD 379 (395)
Q Consensus 306 g--~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~ 379 (395)
| +++++|.|++|+|++|+...+ ++..++. ++++|++.+| ++++|+.|+|||+|||+..+. .|..||+.+|.+
T Consensus 255 g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~-~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~ 332 (466)
T PRK07818 255 GKAQELEADKVLQAIGFAPRVEGYGLEKTGVA-LTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAET 332 (466)
T ss_pred CCeEEEEeCEEEECcCcccCCCCCCchhcCcE-ECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHH
Confidence 6 379999999999999998544 5677888 7888999998 788999999999999987644 899999999999
Q ss_pred HHhh
Q 039923 380 IASQ 383 (395)
Q Consensus 380 i~~~ 383 (395)
|.+.
T Consensus 333 i~g~ 336 (466)
T PRK07818 333 IAGA 336 (466)
T ss_pred HcCC
Confidence 9864
No 43
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.7e-31 Score=255.99 Aligned_cols=304 Identities=14% Similarity=0.178 Sum_probs=193.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc--cccCCcCceeeecCCccc---cCCCCCCC----CCCCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL--WKLKIYDHLQLHLPKQFC---QLPYVPFP----REYPA 79 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~ 79 (395)
+.|||+|||||++|+++|..+++.|.+|+|||++ .+||+ .+-+.+....+....... ....+... .+++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 5689999999999999999999999999999996 68883 333433222222111110 00001000 01111
Q ss_pred CC-CHHHH----HHHHHHHHHHcCCccccCce-EEE---EE-----E------cCCCCcEEEE------Ecc-EEEEeCE
Q 039923 80 YP-SGQQF----ITYMEAYANHFEIEPLLGQE-VQW---AK-----Y------DAAMGHWRVK------THE-YEFMCRW 132 (395)
Q Consensus 80 ~~-~~~~~----~~~~~~~~~~~~~~~~~~~~-V~~---v~-----~------~~~~~~~~v~------~~~-~~~~~d~ 132 (395)
.. ..+.+ .+.++..+++.+++++.+.. +.. +. . ..+...++|. .++ .+++||+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~ 205 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKN 205 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCE
Confidence 00 11222 23334455566777655432 111 00 0 0011223342 223 6799999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeecc
Q 039923 133 LIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKK 212 (395)
Q Consensus 133 lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~ 212 (395)
|||||| ++|..|++||.+. +..+..+... . .+++++|||+|.+|+|+|..+...|++||++++++ +++|..
T Consensus 206 lVIATG--S~P~~P~IpG~~~----v~ts~~~~~l-~-~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~-~il~~~ 276 (561)
T PTZ00058 206 ILIAVG--NKPIFPDVKGKEF----TISSDDFFKI-K-EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN-RLLRKF 276 (561)
T ss_pred EEEecC--CCCCCCCCCCcee----EEEHHHHhhc-c-CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc-cccccC
Confidence 999999 7888999998641 2333333222 1 38999999999999999999999999999999988 666643
Q ss_pred ccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC
Q 039923 213 ILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG 292 (395)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 292 (395)
+. .+... +.+.+++.+|++..+
T Consensus 277 d~-----~i~~~-----------------------------------------------------l~~~L~~~GV~i~~~ 298 (561)
T PTZ00058 277 DE-----TIINE-----------------------------------------------------LENDMKKNNINIITH 298 (561)
T ss_pred CH-----HHHHH-----------------------------------------------------HHHHHHHCCCEEEeC
Confidence 32 11111 223333445555544
Q ss_pred --ccEEecC---e--EEEeCC-cEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecc
Q 039923 293 --IQKFTAK---G--AEFVNR-TVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFAR 363 (395)
Q Consensus 293 --v~~~~~~---~--v~~~~g-~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~ 363 (395)
+.++++. + +.+.++ +++++|.|++|+|++|+...+ ++..++. +++|++.+| ++++|+.|+|||+|||+
T Consensus 299 ~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~--~~~G~I~VD-e~lqTs~p~IYA~GDv~ 375 (561)
T PTZ00058 299 ANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK--TPKGYIKVD-DNQRTSVKHIYAVGDCC 375 (561)
T ss_pred CEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee--cCCCeEEEC-cCCccCCCCEEEeEecc
Confidence 5555532 2 233343 579999999999999998433 2333443 368999998 78899999999999998
Q ss_pred c----------------------------------ccc---cchhhHHHHHHHHHhh
Q 039923 364 Q----------------------------------GLL---GISMDAHKVADDIASQ 383 (395)
Q Consensus 364 ~----------------------------------~~~---~a~~~g~~~a~~i~~~ 383 (395)
. ... .|..||+.+|.+|.+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 376 MVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred CccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 7 222 7999999999999864
No 44
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=2.8e-32 Score=254.99 Aligned_cols=282 Identities=15% Similarity=0.157 Sum_probs=189.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCC--CEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGV--PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~--~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
++|||||||++|+++|..|+++|. +|+|++++.+.+ |.... .+..+....... ......
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~~--l~~~~~~~~~~~-----~~~~~~----- 64 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERPP--LSKSMLLEDSPQ-----LQQVLP----- 64 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCCC--CCHHHHCCCCcc-----ccccCC-----
Confidence 579999999999999999999986 899999987543 21111 111111100000 000000
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNG 167 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~ 167 (395)
..+..+.+++++.++.|..++... .. +++++ ..+.||+||+||| +.++.+++++... ..++......+.
T Consensus 65 --~~~~~~~~i~~~~g~~V~~id~~~--~~--v~~~~g~~~~yd~LViATG--s~~~~~p~~~~~~--~~v~~~~~~~da 134 (396)
T PRK09754 65 --ANWWQENNVHLHSGVTIKTLGRDT--RE--LVLTNGESWHWDQLFIATG--AAARPLPLLDALG--ERCFTLRHAGDA 134 (396)
T ss_pred --HHHHHHCCCEEEcCCEEEEEECCC--CE--EEECCCCEEEcCEEEEccC--CCCCCCCCCCcCC--CCEEecCCHHHH
Confidence 123345689999999999998765 43 55554 7899999999999 6776666555332 112222111111
Q ss_pred -----cCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhh
Q 039923 168 -----VEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCS 242 (395)
Q Consensus 168 -----~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (395)
....+++++|||+|.+|+|+|..|.+.|++||++++.+ .++++... ......
T Consensus 135 ~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~----~~~~~~------------------ 191 (396)
T PRK09754 135 ARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGRNAP----PPVQRY------------------ 191 (396)
T ss_pred HHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhhhcC----HHHHHH------------------
Confidence 12257899999999999999999999999999999988 55443211 001111
Q ss_pred hhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC---eEEEeCCcEecCcEEEEc
Q 039923 243 RLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK---GAEFVNRTVKEFDSIILA 317 (395)
Q Consensus 243 ~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~---~v~~~~g~~i~~D~vi~a 317 (395)
+.+.+++.+|+++.+ |+++... .+.+.+|+++++|.||++
T Consensus 192 -----------------------------------l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a 236 (396)
T PRK09754 192 -----------------------------------LLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYG 236 (396)
T ss_pred -----------------------------------HHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEEC
Confidence 122233334555543 5666532 256778989999999999
Q ss_pred CCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEeccccc------------ccchhhHHHHHHHHHhhh
Q 039923 318 TGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGL------------LGISMDAHKVADDIASQW 384 (395)
Q Consensus 318 tG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~------------~~a~~~g~~~a~~i~~~~ 384 (395)
+|.+|+. .+++..++. . + +.+.+| ++++|+.|+|||+|||+..+ ..|..||+.+|+||.+..
T Consensus 237 ~G~~pn~-~l~~~~gl~-~-~-~gi~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 237 IGISAND-QLAREANLD-T-A-NGIVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred CCCChhh-HHHHhcCCC-c-C-CCEEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 9999997 577777776 3 3 457788 67889999999999998421 168999999999998754
No 45
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=2.1e-32 Score=274.02 Aligned_cols=279 Identities=19% Similarity=0.201 Sum_probs=196.6
Q ss_pred eEEECCChHHHHHHHHHHHcC---CCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 13 PVIVGAGPSGLAAAACLKERG---VPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 13 vvIIG~G~aG~~~A~~l~~~g---~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
|||||||++|+.+|.+|.+.+ ++|+|||+++.++ |....+ +. -+.+....+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--~~------------~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--SS------------VLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--cH------------HHCCCCCHHHccCC
Confidence 699999999999999998864 6999999998653 222111 00 00111222333333
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCCC-
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNG- 167 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~- 167 (395)
..+++++.+++++.+++|+.++... .. |++.+ .++.||+||+||| +.|+.|++||.+... ++....+.+.
T Consensus 60 ~~~~~~~~gv~~~~g~~V~~Id~~~--k~--V~~~~g~~~~yD~LVlATG--s~p~~p~ipG~~~~~--v~~~rt~~d~~ 131 (785)
T TIGR02374 60 SKDWYEKHGITLYTGETVIQIDTDQ--KQ--VITDAGRTLSYDKLILATG--SYPFILPIPGADKKG--VYVFRTIEDLD 131 (785)
T ss_pred CHHHHHHCCCEEEcCCeEEEEECCC--CE--EEECCCcEeeCCEEEECCC--CCcCCCCCCCCCCCC--EEEeCCHHHHH
Confidence 3455667799999999999998765 33 66655 7899999999999 788999999976422 2222221111
Q ss_pred ----cCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhh
Q 039923 168 ----VEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSR 243 (395)
Q Consensus 168 ----~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (395)
....+++++|||+|.+|+|+|..|++.|.+|+++++.+ .++++... .....
T Consensus 132 ~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~ld----~~~~~-------------------- 186 (785)
T TIGR02374 132 AIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQLD----QTAGR-------------------- 186 (785)
T ss_pred HHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhcC----HHHHH--------------------
Confidence 11257899999999999999999999999999999888 45443211 00011
Q ss_pred hhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC----eEEEeCCcEecCcEEEEc
Q 039923 244 LVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK----GAEFVNRTVKEFDSIILA 317 (395)
Q Consensus 244 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g~~i~~D~vi~a 317 (395)
.+.+.+++.+|+++.+ +.++.+. ++.+.+|+++++|.||++
T Consensus 187 ---------------------------------~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a 233 (785)
T TIGR02374 187 ---------------------------------LLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMA 233 (785)
T ss_pred ---------------------------------HHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEEC
Confidence 1122333345555544 5555432 477889999999999999
Q ss_pred CCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc-------cchhhHHHHHHHHHhh
Q 039923 318 TGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL-------GISMDAHKVADDIASQ 383 (395)
Q Consensus 318 tG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~-------~a~~~g~~~a~~i~~~ 383 (395)
+|++|+. .+.+..++. .+ |.+.+| ++++|+.|+|||+|||+.... .|..||+.+|.||.+.
T Consensus 234 ~G~~Pn~-~la~~~gl~-~~--ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~ 301 (785)
T TIGR02374 234 AGIRPND-ELAVSAGIK-VN--RGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGV 301 (785)
T ss_pred CCCCcCc-HHHHhcCCc-cC--CCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCC
Confidence 9999997 577777887 44 557777 688999999999999986432 5789999999999864
No 46
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-32 Score=217.53 Aligned_cols=293 Identities=19% Similarity=0.222 Sum_probs=216.3
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
.+.+|+|||+||++.++|+++++..++-++||-.. . ...-++-++........||.+ |.-+...++++
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~-----~~i~pGGQLtTTT~veNfPGF------Pdgi~G~~l~d 74 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-A-----NGIAPGGQLTTTTDVENFPGF------PDGITGPELMD 74 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeee-c-----cCcCCCceeeeeeccccCCCC------CcccccHHHHH
Confidence 34689999999999999999999999999999642 1 111223333333344444433 33456789999
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCC--CCCcccEeecCCCCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGI--SEFRGRLLHTSTYKN 166 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~--~~~~~~~~~~~~~~~ 166 (395)
.|++++.++|.++.. .+|.+++... .-|.+-++.+.+.+|.+|+|||+ ..+...+||. .+||...+..|..|+
T Consensus 75 ~mrkqs~r~Gt~i~t-EtVskv~~ss--kpF~l~td~~~v~~~avI~atGA--sAkRl~~pg~ge~~fWqrGiSaCAVCD 149 (322)
T KOG0404|consen 75 KMRKQSERFGTEIIT-ETVSKVDLSS--KPFKLWTDARPVTADAVILATGA--SAKRLHLPGEGEGEFWQRGISACAVCD 149 (322)
T ss_pred HHHHHHHhhcceeee-eehhhccccC--CCeEEEecCCceeeeeEEEeccc--ceeeeecCCCCcchHHhcccchhhccc
Confidence 999999999988764 4688999887 78888888899999999999995 4444455654 348888899999999
Q ss_pred CcC--CCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhh
Q 039923 167 GVE--FRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRL 244 (395)
Q Consensus 167 ~~~--~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (395)
... +..|-.+|||||.+|+|-|.+|.+.+.+|++++|++ .+ +.+..|.
T Consensus 150 Gaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd-~f-----------RAs~~Mq------------------ 199 (322)
T KOG0404|consen 150 GAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRD-HF-----------RASKIMQ------------------ 199 (322)
T ss_pred CcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhh-hh-----------hHHHHHH------------------
Confidence 876 789999999999999999999999999999999998 33 2222111
Q ss_pred hccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC----------eEEEeCCcEecCc
Q 039923 245 VLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK----------GAEFVNRTVKEFD 312 (395)
Q Consensus 245 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----------~v~~~~g~~i~~D 312 (395)
.+..++.+|+++.+ +.+..++ .+.+.+...++++
T Consensus 200 ----------------------------------~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~ 245 (322)
T KOG0404|consen 200 ----------------------------------QRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVS 245 (322)
T ss_pred ----------------------------------HHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccc
Confidence 22233445665544 2222221 1233334579999
Q ss_pred EEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc----cchhhHHHHHHHHHhhhc
Q 039923 313 SIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL----GISMDAHKVADDIASQWN 385 (395)
Q Consensus 313 ~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~----~a~~~g~~~a~~i~~~~~ 385 (395)
-++++.|..|++ .|++. .++ +|++|++++-+....|++||+||+||+..... .|...|..+|-...++|.
T Consensus 246 GlFf~IGH~Pat-~~l~g-qve-~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe~yL~ 319 (322)
T KOG0404|consen 246 GLFFAIGHSPAT-KFLKG-QVE-LDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAERYLT 319 (322)
T ss_pred eeEEEecCCchh-hHhcC-cee-eccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhhHHHHhh
Confidence 999999999998 67666 677 88999999987778899999999999976654 444555566655555554
No 47
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=1.1e-31 Score=270.66 Aligned_cols=292 Identities=20% Similarity=0.225 Sum_probs=192.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+||||||||++||.+|++.|++|+|||+...+||.++.. ++.+....++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG------------------------IP~~rlp~~vi~ 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG------------------------IPEFRLPNQLID 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc------------------------CCCCcChHHHHH
Confidence 36899999999999999999999999999999999999876532 122333456777
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCC--
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYK-- 165 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~-- 165 (395)
...+.+++.|++++.++.+.. .+++++ ....||.||+|||+ ..|+.+++||.+. .+ ++...++.
T Consensus 361 ~~i~~l~~~Gv~f~~n~~vG~----------dit~~~l~~~~yDAV~LAtGA-~~pr~l~IpG~dl-~G-V~~a~dfL~~ 427 (944)
T PRK12779 361 DVVEKIKLLGGRFVKNFVVGK----------TATLEDLKAAGFWKIFVGTGA-GLPTFMNVPGEHL-LG-VMSANEFLTR 427 (944)
T ss_pred HHHHHHHhhcCeEEEeEEecc----------EEeHHHhccccCCEEEEeCCC-CCCCcCCCCCCcC-cC-cEEHHHHHHH
Confidence 777778888999888865521 145544 45679999999996 3678888898643 11 11111110
Q ss_pred -------------CCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChh
Q 039923 166 -------------NGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVD 232 (395)
Q Consensus 166 -------------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
......+++|+|||||.+|+|+|..+.+.|++|+++.|++...+|.... .
T Consensus 428 ~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~-----e------------ 490 (944)
T PRK12779 428 VNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVE-----E------------ 490 (944)
T ss_pred HHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHH-----H------------
Confidence 1112368999999999999999999999999999999886222221100 0
Q ss_pred HHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhc---CCeE---Eec-CccEEecCe--EEE
Q 039923 233 VVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKS---GEIK---VVP-GIQKFTAKG--AEF 303 (395)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~---~~~-~v~~~~~~~--v~~ 303 (395)
+ . ...+.|++. .......+...+ +.+. +.. ...+.+.++ ...
T Consensus 491 ----~-~--------~a~eeGV~~----------------~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~ 541 (944)
T PRK12779 491 ----L-H--------HALEEGINL----------------AVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPK 541 (944)
T ss_pred ----H-H--------HHHHCCCEE----------------EeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeee
Confidence 0 0 001123320 000000000000 0110 000 000001111 111
Q ss_pred eCC--cEecCcEEEEcCCCCCCCCccc-cccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHH
Q 039923 304 VNR--TVKEFDSIILATGYRSNVSSWL-KEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVA 377 (395)
Q Consensus 304 ~~g--~~i~~D~vi~atG~~~~~~~~~-~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a 377 (395)
.+| .++++|.||+|+|+.|+. .+. ...+++ .+++|.+.+|+..++|+.|+|||+|||+.++. .|+.+|+.+|
T Consensus 542 ~~G~e~~i~aD~VI~AiG~~p~~-~l~~~~~gle-~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA 619 (944)
T PRK12779 542 PTGEIERVPVDLVIMALGNTANP-IMKDAEPGLK-TNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAA 619 (944)
T ss_pred cCCceEEEECCEEEEcCCcCCCh-hhhhcccCce-ECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHH
Confidence 123 369999999999999986 332 334777 78899998885567899999999999998875 9999999999
Q ss_pred HHHHhhhc
Q 039923 378 DDIASQWN 385 (395)
Q Consensus 378 ~~i~~~~~ 385 (395)
.+|.++|.
T Consensus 620 ~~I~~~L~ 627 (944)
T PRK12779 620 KEIVGEIP 627 (944)
T ss_pred HHHHHHhc
Confidence 99999875
No 48
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=4.6e-31 Score=252.35 Aligned_cols=302 Identities=17% Similarity=0.205 Sum_probs=196.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccC-CcCceeeecCCccc----cCCCCCCCCCCCCCCCHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK-IYDHLQLHLPKQFC----QLPYVPFPREYPAYPSGQ 84 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 84 (395)
.|||+|||||++|+++|.+|++.|.+|+|||+ +.+||++... .+|...+....... ....+..... ....+-.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHH
Confidence 38999999999999999999999999999999 7899976532 12221100000000 0000100000 0011222
Q ss_pred HHHH-----------HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCCCCCCCCCC-C
Q 039923 85 QFIT-----------YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVATGENEVPVLPKIP-G 150 (395)
Q Consensus 85 ~~~~-----------~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~~~~~p~~~-g 150 (395)
.+.+ ......++.+++++.+. +..+ +. ..+.+...+ .++.||+||+||| +.|+.|++| +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~--~~--~~~~v~~~~g~~~~~~d~lVlAtG--~~p~~~~~~~~ 151 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKFL--DP--GTVLVTGENGEETLTAKNIIIATG--SRPRSLPGPFD 151 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cC--CEEEEecCCCcEEEEeCEEEEcCC--CCCCCCCCCCC
Confidence 2222 22334445566655442 2222 12 555566544 5899999999999 677777665 3
Q ss_pred CCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCC
Q 039923 151 ISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFP 230 (395)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~ 230 (395)
.+ +..++...........+++++|||+|.+|+|+|..+.+.|++|+++.+.+ .++|.... .+...
T Consensus 152 ~~---~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~~------ 216 (461)
T TIGR01350 152 FD---GEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDA-----EVSKV------ 216 (461)
T ss_pred CC---CceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCH-----HHHHH------
Confidence 22 22233332222223357899999999999999999999999999999988 55553221 11111
Q ss_pred hhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEe--cCe--EEEe
Q 039923 231 VDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFT--AKG--AEFV 304 (395)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~~--v~~~ 304 (395)
+.+.+++.+++++.+ |.++. +.+ +.+.
T Consensus 217 -----------------------------------------------~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~ 249 (461)
T TIGR01350 217 -----------------------------------------------VAKALKKKGVKILTNTKVTAVEKNDDQVVYENK 249 (461)
T ss_pred -----------------------------------------------HHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 122233344555544 55554 233 3444
Q ss_pred CC--cEecCcEEEEcCCCCCCCCc-cccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHH
Q 039923 305 NR--TVKEFDSIILATGYRSNVSS-WLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVAD 378 (395)
Q Consensus 305 ~g--~~i~~D~vi~atG~~~~~~~-~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~ 378 (395)
+| +++++|.+|+|+|.+|+... +++..++. .+++|++.+| .+++++.|+||++|||+..+. .|..||+.+|+
T Consensus 250 ~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~-~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~ 327 (461)
T TIGR01350 250 GGETETLTGEKVLVAVGRKPNTEGLGLENLGVE-LDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAE 327 (461)
T ss_pred CCcEEEEEeCEEEEecCCcccCCCCCcHhhCce-ECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHH
Confidence 66 47999999999999999854 46777888 7889999998 788899999999999987654 89999999999
Q ss_pred HHHhhh
Q 039923 379 DIASQW 384 (395)
Q Consensus 379 ~i~~~~ 384 (395)
+|.+.-
T Consensus 328 ~i~~~~ 333 (461)
T TIGR01350 328 NIAGKE 333 (461)
T ss_pred HHcCCC
Confidence 998653
No 49
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.4e-31 Score=255.59 Aligned_cols=305 Identities=19% Similarity=0.222 Sum_probs=193.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEec------CCCcccccccCC-cCce-eeecCCccccC----CCC--C---
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEK------ESCLASLWKLKI-YDHL-QLHLPKQFCQL----PYV--P--- 72 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~------~~~~~g~~~~~~-~~~~-~~~~~~~~~~~----~~~--~--- 72 (395)
.|||+||||||+|+++|.++++.|.+|+|||+ ...+||++.... .|.. .+.....+... ..+ .
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 58999999999999999999999999999998 357788765421 1211 01100000000 000 0
Q ss_pred CCCCCCCCCC-HHHH----HHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc--c-EEEEeCEEEEeeCCCCCCC
Q 039923 73 FPREYPAYPS-GQQF----ITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH--E-YEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 73 ~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~--~-~~~~~d~lVlAtG~~~~~~ 144 (395)
.+.+++.... .+.+ .+..+...+..+++++.+ ++..++..+ ..++|... + ++++||+||+||| +.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~--~~~~v~v~~~~~~~~~~d~lViATG--s~p~ 158 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTD--AGYEIKVTGEDETVITAKHVIIATG--SEPR 158 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCC--CCCEEEEecCCCeEEEeCEEEEeCC--CCCC
Confidence 0011111111 0111 223334444556766543 344555443 34445543 2 5899999999999 6665
Q ss_pred CCCCCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHH
Q 039923 145 LPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVW 224 (395)
Q Consensus 145 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 224 (395)
.|+ +.. +.+..++.+.........+++++|||+|.+|+|+|..+.+.|.+|+++++++ .++|..+. .+...
T Consensus 159 ~~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~~ 229 (475)
T PRK06327 159 HLP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFLAAADE-----QVAKE 229 (475)
T ss_pred CCC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccCCcCCH-----HHHHH
Confidence 432 222 1122233332222223457899999999999999999999999999999988 55554322 11111
Q ss_pred HHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC--e
Q 039923 225 LLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK--G 300 (395)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~ 300 (395)
..+.+++.++.+..+ |.+++.. +
T Consensus 230 -----------------------------------------------------~~~~l~~~gi~i~~~~~v~~i~~~~~~ 256 (475)
T PRK06327 230 -----------------------------------------------------AAKAFTKQGLDIHLGVKIGEIKTGGKG 256 (475)
T ss_pred -----------------------------------------------------HHHHHHHcCcEEEeCcEEEEEEEcCCE
Confidence 122233335555544 5555432 2
Q ss_pred --EEEeC--C--cEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cch
Q 039923 301 --AEFVN--R--TVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GIS 370 (395)
Q Consensus 301 --v~~~~--g--~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~ 370 (395)
+.+.+ | +++++|.+++++|++|+...+ ++..++. ++++|++.+| .+++|+.|+|||+|||+..+. .|.
T Consensus 257 v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~-~~~~G~i~vd-~~~~Ts~~~VyA~GD~~~~~~~~~~A~ 334 (475)
T PRK06327 257 VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLK-LDERGFIPVD-DHCRTNVPNVYAIGDVVRGPMLAHKAE 334 (475)
T ss_pred EEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCce-eCCCCeEeEC-CCCccCCCCEEEEEeccCCcchHHHHH
Confidence 34444 3 479999999999999998543 4566888 7889999998 678899999999999987654 899
Q ss_pred hhHHHHHHHHHhh
Q 039923 371 MDAHKVADDIASQ 383 (395)
Q Consensus 371 ~~g~~~a~~i~~~ 383 (395)
.||+.+|.+|.+.
T Consensus 335 ~~G~~aa~~i~g~ 347 (475)
T PRK06327 335 EEGVAVAERIAGQ 347 (475)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999864
No 50
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=1.1e-31 Score=266.48 Aligned_cols=288 Identities=20% Similarity=0.210 Sum_probs=188.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+||||||||+++|..|+++|++|+|||+.+.+||.++.. . | .+....++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~-I--------------P---------~~Rlp~evL~ 593 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI-I--------------P---------QFRIPAELIQ 593 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee-c--------------c---------cccccHHHHH
Confidence 45899999999999999999999999999999999888865431 1 1 1111134445
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCC---
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYK--- 165 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~--- 165 (395)
...+.+.+.|++++.++.+ .++..+ .....||+||||||++ .+..++++|.+. .+.....+.
T Consensus 594 ~die~l~~~GVe~~~gt~V-di~le~----------L~~~gYDaVILATGA~-~~~~l~IpG~~~---gV~saldfL~~~ 658 (1019)
T PRK09853 594 HDIEFVKAHGVKFEFGCSP-DLTVEQ----------LKNEGYDYVVVAIGAD-KNGGLKLEGGNQ---NVIKALPFLEEY 658 (1019)
T ss_pred HHHHHHHHcCCEEEeCcee-EEEhhh----------heeccCCEEEECcCCC-CCCCCCCCCccC---CceehHHHHHHH
Confidence 5556667789999888776 222211 0345699999999963 344556777542 122222111
Q ss_pred ---CCcCCCCCeEEEECCCcCHHHHHHHHhhC-C-CeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHH
Q 039923 166 ---NGVEFRASKVLVVGCGNSGMEISFDLCKN-G-AQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLF 240 (395)
Q Consensus 166 ---~~~~~~~~~v~VvG~G~~a~e~a~~l~~~-g-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (395)
......+++|+|||||.+|+|+|..+.+. | ++|+++.|++...+|.... .+..
T Consensus 659 k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~e---------Ele~------------- 716 (1019)
T PRK09853 659 KNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWRE---------EYEE------------- 716 (1019)
T ss_pred hhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHH---------HHHH-------------
Confidence 11123589999999999999999988876 4 4899999987333332110 0000
Q ss_pred hhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhh-cCCeEEecC-ccEEecCe----EEEeCCcEecCcEE
Q 039923 241 CSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIK-SGEIKVVPG-IQKFTAKG----AEFVNRTVKEFDSI 314 (395)
Q Consensus 241 ~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~-v~~~~~~~----v~~~~g~~i~~D~v 314 (395)
....|+.. .... ....+. ++++.+..- +...+..+ +...++.++++|.|
T Consensus 717 --------AleeGVe~----------------~~~~-~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~V 771 (1019)
T PRK09853 717 --------ALEDGVEF----------------KELL-NPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTV 771 (1019)
T ss_pred --------HHHcCCEE----------------EeCC-ceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEE
Confidence 01123320 0000 000000 122221100 00111111 22344568999999
Q ss_pred EEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHHhhhc
Q 039923 315 ILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIASQWN 385 (395)
Q Consensus 315 i~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~~~~~ 385 (395)
|+|+|..|+. .+++..++. ++++|++.++ .+++|+.|||||+|||+.++. .|+.+|+.+|.+|.+...
T Consensus 772 IvAIG~~Pnt-elle~~GL~-ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 772 ITAIGEQVDT-ELLKANGIP-LDKKGWPVVD-ANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred EECCCCcCCh-hHHHhcCcc-ccCCCCEEeC-CCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999997 667777888 7888999987 688899999999999997765 899999999999998775
No 51
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=3.8e-31 Score=251.82 Aligned_cols=301 Identities=16% Similarity=0.149 Sum_probs=189.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC--------Cccccccc--CCcCceeeecCCcccc---CCCCCCCCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES--------CLASLWKL--KIYDHLQLHLPKQFCQ---LPYVPFPRE 76 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~--------~~~g~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~ 76 (395)
.|||+|||||++|+.+|..+++.|.+|++||+.. .+||++.+ +.+..+.+........ ...+.....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4899999999999999999999999999999741 47885432 3222221111100000 000100000
Q ss_pred CCCCCCHHHHHH-----------HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCC
Q 039923 77 YPAYPSGQQFIT-----------YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEV 142 (395)
Q Consensus 77 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~ 142 (395)
.....+-..+.+ .....++..++++..+. . .+.+. +.+.|+..+ +++.||+||+||| ++
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~-a---~f~~~-~~v~v~~~~g~~~~~~~d~lVIATG--s~ 154 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY-A---EFVDK-HRIKATNKKGKEKIYSAERFLIATG--ER 154 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-E---EEcCC-CEEEEeccCCCceEEEeCEEEEecC--CC
Confidence 000112222222 22233444566654331 1 22221 444454322 5799999999999 78
Q ss_pred CCCCCCCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHH
Q 039923 143 PVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAIS 222 (395)
Q Consensus 143 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~ 222 (395)
|..|++||..++ ...+...... ...+++++|||+|.+|+|+|..+++.|++|+++.|. .++|..+. .+.
T Consensus 155 p~~p~ipG~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d~-----~~~ 223 (484)
T TIGR01438 155 PRYPGIPGAKEL---CITSDDLFSL-PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQ-----DCA 223 (484)
T ss_pred CCCCCCCCccce---eecHHHhhcc-cccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec--ccccccCH-----HHH
Confidence 888999987542 1222222221 235678999999999999999999999999999873 45554332 122
Q ss_pred HHHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEec--
Q 039923 223 VWLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTA-- 298 (395)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~-- 298 (395)
.. +.+.+++.+|+++.+ +.++..
T Consensus 224 ~~-----------------------------------------------------l~~~L~~~gV~i~~~~~v~~v~~~~ 250 (484)
T TIGR01438 224 NK-----------------------------------------------------VGEHMEEHGVKFKRQFVPIKVEQIE 250 (484)
T ss_pred HH-----------------------------------------------------HHHHHHHcCCEEEeCceEEEEEEcC
Confidence 11 122333345555544 334432
Q ss_pred C--eEEEeCC---cEecCcEEEEcCCCCCCCCcc-ccccccccccC-CCCCCCCCCCCCCCCCCeEEEEecccc-cc---
Q 039923 299 K--GAEFVNR---TVKEFDSIILATGYRSNVSSW-LKEASLFNQKN-NNNPQDSYPKNWKGKNGVYSVGFARQG-LL--- 367 (395)
Q Consensus 299 ~--~v~~~~g---~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~-~g~~~~~~~~~~~~~~~iya~Gd~~~~-~~--- 367 (395)
. .+.+.++ +++++|.|++|+|++|+...+ ++..++. +++ +|++.+| ++++|+.|+|||+|||+.. +.
T Consensus 251 ~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~-~~~~~G~I~Vd-~~~~Ts~p~IyA~GDv~~~~~~l~~ 328 (484)
T TIGR01438 251 AKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVK-INKKTGKIPAD-EEEQTNVPYIYAVGDILEDKQELTP 328 (484)
T ss_pred CeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccce-ecCcCCeEecC-CCcccCCCCEEEEEEecCCCccchH
Confidence 1 2445555 379999999999999998543 5677887 665 5889898 6888999999999999853 32
Q ss_pred cchhhHHHHHHHHHhh
Q 039923 368 GISMDAHKVADDIASQ 383 (395)
Q Consensus 368 ~a~~~g~~~a~~i~~~ 383 (395)
.|..||+.+|++|.+.
T Consensus 329 ~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 329 VAIQAGRLLAQRLFSG 344 (484)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8999999999999863
No 52
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.6e-31 Score=247.98 Aligned_cols=282 Identities=18% Similarity=0.213 Sum_probs=198.0
Q ss_pred CeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 12 GPVIVGAGPSGLAAAACLKER---GVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~---g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
+|||||||++|+.+|.+|.++ +.+|+|||++.... |... .+. ...+....+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~----------~~~-----~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM----------LPG-----MIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch----------hhH-----HHheeCCHHHhcc
Confidence 489999999999999999754 57999999987421 1100 000 0011223355666
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCC----
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTST---- 163 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~---- 163 (395)
.+++++++++++++.+ +|++++..+ +. |++++ +++.||+||+||| +.+..|.+||..+.. .....
T Consensus 59 ~~~~~~~~~gv~~~~~-~v~~id~~~--~~--V~~~~g~~~~yD~LviAtG--~~~~~~~i~g~~~~~---~~~~~~~~~ 128 (364)
T TIGR03169 59 DLRRLARQAGARFVIA-EATGIDPDR--RK--VLLANRPPLSYDVLSLDVG--STTPLSGVEGAADLA---VPVKPIENF 128 (364)
T ss_pred cHHHHHHhcCCEEEEE-EEEEEeccc--CE--EEECCCCcccccEEEEccC--CCCCCCCCCcccccc---cccCCHHHH
Confidence 6677778889997654 799998876 43 66666 6899999999999 788888888854311 11100
Q ss_pred ------CCCCc--CCCCCeEEEECCCcCHHHHHHHHhh----CC--CeEEEEEecCceeeeccccCCChhHHHHHHHhhC
Q 039923 164 ------YKNGV--EFRASKVLVVGCGNSGMEISFDLCK----NG--AQVSLVVRDKVHILPKKILGRSSFAISVWLLKWF 229 (395)
Q Consensus 164 ------~~~~~--~~~~~~v~VvG~G~~a~e~a~~l~~----~g--~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~ 229 (395)
+.... ....++++|||+|.+|+|+|..|.. .| .+|+++ +.+ .+++.... ....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~~-----~~~~------ 195 (364)
T TIGR03169 129 LARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFPA-----KVRR------ 195 (364)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCCH-----HHHH------
Confidence 00000 1246799999999999999999975 23 479998 444 34332111 1111
Q ss_pred ChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecCeEEEeCCc
Q 039923 230 PVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAKGAEFVNRT 307 (395)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~v~~~~g~ 307 (395)
.+.+.+++.+|++..+ +.++++..+.+.+|+
T Consensus 196 -----------------------------------------------~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~ 228 (364)
T TIGR03169 196 -----------------------------------------------LVLRLLARRGIEVHEGAPVTRGPDGALILADGR 228 (364)
T ss_pred -----------------------------------------------HHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCC
Confidence 1233344456666655 777777788888999
Q ss_pred EecCcEEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCC-CCCCeEEEEeccccc--------ccchhhHHHHHH
Q 039923 308 VKEFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWK-GKNGVYSVGFARQGL--------LGISMDAHKVAD 378 (395)
Q Consensus 308 ~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~-~~~~iya~Gd~~~~~--------~~a~~~g~~~a~ 378 (395)
++++|.+|+|+|.+|+. ++...++. ++++|++.+| +++++ +.|+|||+|||+... ..|+.||+.+|+
T Consensus 229 ~i~~D~vi~a~G~~p~~--~l~~~gl~-~~~~g~i~vd-~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ 304 (364)
T TIGR03169 229 TLPADAILWATGARAPP--WLAESGLP-LDEDGFLRVD-PTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAA 304 (364)
T ss_pred EEecCEEEEccCCChhh--HHHHcCCC-cCCCCeEEEC-CccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHH
Confidence 99999999999999973 45566777 7788999999 56776 899999999998532 178999999999
Q ss_pred HHHhhhccccc
Q 039923 379 DIASQWNSETR 389 (395)
Q Consensus 379 ~i~~~~~~~~~ 389 (395)
||.+.+.++..
T Consensus 305 ni~~~l~g~~~ 315 (364)
T TIGR03169 305 NLRASLRGQPL 315 (364)
T ss_pred HHHHHhcCCCC
Confidence 99999876643
No 53
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.98 E-value=4.9e-31 Score=252.11 Aligned_cols=305 Identities=21% Similarity=0.227 Sum_probs=193.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccC-CcCc-eeeecCCccccC---CCCCC-----CCCCCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK-IYDH-LQLHLPKQFCQL---PYVPF-----PREYPA 79 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~-~~~~-~~~~~~~~~~~~---~~~~~-----~~~~~~ 79 (395)
.|||+||||||+|+++|..|++.|.+|+|||+. .+||++... ..|. ..+.....+... ..+.. ..++..
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK 82 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 589999999999999999999999999999996 789976442 1111 111100000000 00000 001110
Q ss_pred CC-CHHHHHH----HHHHHHHHcCCccccCceEEEEEEc---CCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCCCCC
Q 039923 80 YP-SGQQFIT----YMEAYANHFEIEPLLGQEVQWAKYD---AAMGHWRVKTHE---YEFMCRWLIVATGENEVPVLPKI 148 (395)
Q Consensus 80 ~~-~~~~~~~----~~~~~~~~~~~~~~~~~~V~~v~~~---~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~p~~ 148 (395)
.. ..+.+.+ .....+++.+++++.+ +++.++.. +..+.++|.+.+ .++.||+||+||| ++|..+
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATG--s~p~~~-- 157 (472)
T PRK05976 83 VQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATG--SRPVEL-- 157 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCC--CCCCCC--
Confidence 00 1122222 2334455667887655 45555443 112366676544 5799999999999 566543
Q ss_pred CCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhh
Q 039923 149 PGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKW 228 (395)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~ 228 (395)
|+.+.....+.+...... ....+++++|||+|.+|+|+|..|++.|++|+++.|.+ +++|..+. .++..+
T Consensus 158 p~~~~~~~~~~~~~~~~~-~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~~~~-----~~~~~l--- 227 (472)
T PRK05976 158 PGLPFDGEYVISSDEALS-LETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPTEDA-----ELSKEV--- 227 (472)
T ss_pred CCCCCCCceEEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCcCCH-----HHHHHH---
Confidence 332211111233322222 22357899999999999999999999999999999988 66665432 122211
Q ss_pred CChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEe---cCeE--
Q 039923 229 FPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFT---AKGA-- 301 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~---~~~v-- 301 (395)
.+.+++.++++..+ |.+++ ..++
T Consensus 228 --------------------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~ 257 (472)
T PRK05976 228 --------------------------------------------------ARLLKKLGVRVVTGAKVLGLTLKKDGGVLI 257 (472)
T ss_pred --------------------------------------------------HHHHHhcCCEEEeCcEEEEEEEecCCCEEE
Confidence 22233345555544 55554 2332
Q ss_pred -EEeCC--cEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHH
Q 039923 302 -EFVNR--TVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAH 374 (395)
Q Consensus 302 -~~~~g--~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~ 374 (395)
.+.+| +++++|.+++|+|.+|+...+ ++..++. . ++|++.+| ++++++.|+||++|||+..+. .|..+|+
T Consensus 258 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~-~-~~g~i~Vd-~~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~ 334 (472)
T PRK05976 258 VAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDID-V-EGGFIQID-DFCQTKERHIYAIGDVIGEPQLAHVAMAEGE 334 (472)
T ss_pred EEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCce-e-cCCEEEEC-CCcccCCCCEEEeeecCCCcccHHHHHHHHH
Confidence 23456 369999999999999998544 3444554 2 57888888 778899999999999986654 8999999
Q ss_pred HHHHHHHhh
Q 039923 375 KVADDIASQ 383 (395)
Q Consensus 375 ~~a~~i~~~ 383 (395)
.+|.+|.+.
T Consensus 335 ~aa~~i~g~ 343 (472)
T PRK05976 335 MAAEHIAGK 343 (472)
T ss_pred HHHHHHcCC
Confidence 999999753
No 54
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.98 E-value=6.4e-31 Score=255.10 Aligned_cols=308 Identities=20% Similarity=0.199 Sum_probs=188.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecC-CCcccc--cccCCcCceeeecCCccccCC------CCCC-----C-
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKE-SCLASL--WKLKIYDHLQLHLPKQFCQLP------YVPF-----P- 74 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~-~~~~g~--~~~~~~~~~~~~~~~~~~~~~------~~~~-----~- 74 (395)
.|||+|||+|++|..+|..+++.|.+|+|||+. ..+||+ ++-|.+....+.....+.... .+.. +
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 589999999999999999999999999999974 468883 444443322211111100000 0000 0
Q ss_pred -------CC----CCCCCCHHHHHHHHHHHHHHcC--Cc-------cccCceEEEEEEcC----CCCcEEEEEccEEEEe
Q 039923 75 -------RE----YPAYPSGQQFITYMEAYANHFE--IE-------PLLGQEVQWAKYDA----AMGHWRVKTHEYEFMC 130 (395)
Q Consensus 75 -------~~----~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~V~~v~~~~----~~~~~~v~~~~~~~~~ 130 (395)
.. ....++-..+.++.+....+.. +. +....+...+.... +...+.+..+++++.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~a 275 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKV 275 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEEC
Confidence 00 0011233444444443333221 11 00011111111111 1122223223478999
Q ss_pred CEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeee
Q 039923 131 RWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILP 210 (395)
Q Consensus 131 d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p 210 (395)
|+|||||| +.|..|++++.+.. .++.+.. .......+++++|||+|.+|+|+|..+...|++||++++.+ +++|
T Consensus 276 d~lIIATG--S~P~~P~~~~~~~~--~V~ts~d-~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~-~ll~ 349 (659)
T PTZ00153 276 KNIIIATG--STPNIPDNIEVDQK--SVFTSDT-AVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP-QLLP 349 (659)
T ss_pred CEEEEcCC--CCCCCCCCCCCCCC--cEEehHH-hhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccC-cccc
Confidence 99999999 78888876654431 2333322 22223357899999999999999999999999999999998 6666
Q ss_pred ccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEe
Q 039923 211 KKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVV 290 (395)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 290 (395)
..+. .++..+...+ +++.+|.++
T Consensus 350 ~~d~-----eis~~l~~~l----------------------------------------------------l~~~GV~I~ 372 (659)
T PTZ00153 350 LLDA-----DVAKYFERVF----------------------------------------------------LKSKPVRVH 372 (659)
T ss_pred cCCH-----HHHHHHHHHH----------------------------------------------------hhcCCcEEE
Confidence 4332 2222111110 122345555
Q ss_pred cC--ccEEecCe----EE--EeC-------C--------cEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCC
Q 039923 291 PG--IQKFTAKG----AE--FVN-------R--------TVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSY 346 (395)
Q Consensus 291 ~~--v~~~~~~~----v~--~~~-------g--------~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~ 346 (395)
.+ |.+++... +. +.+ + +++++|.|++|+|.+|++..+ ++..++. .+ +|++.+|
T Consensus 373 ~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~-~~-~G~I~VD- 449 (659)
T PTZ00153 373 LNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQ-MK-RGFVSVD- 449 (659)
T ss_pred cCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCc-cc-CCEEeEC-
Confidence 44 55554321 22 211 1 379999999999999998555 5666777 54 5999998
Q ss_pred CCCCCC------CCCeEEEEecccccc---cchhhHHHHHHHHHhh
Q 039923 347 PKNWKG------KNGVYSVGFARQGLL---GISMDAHKVADDIASQ 383 (395)
Q Consensus 347 ~~~~~~------~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~~~ 383 (395)
++++++ +|+|||+|||++.+. .|..||+.+|++|.+.
T Consensus 450 e~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 450 EHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 678875 699999999997655 8999999999999875
No 55
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=1.2e-30 Score=240.28 Aligned_cols=286 Identities=18% Similarity=0.164 Sum_probs=187.2
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
...++|+|||||++|+++|..|++.|++|++||+.+.++|.+... .+. ...+.+.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~~--------~~~~~~~~~ 72 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IPE--------FRIPIERVR 72 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Ccc--------cccCHHHHH
Confidence 345799999999999999999999999999999998887654321 000 011223444
Q ss_pred HHHHHHHHHcCCccccCceEEEEEE--cCCCCcEEEEE---ccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeec-
Q 039923 88 TYMEAYANHFEIEPLLGQEVQWAKY--DAAMGHWRVKT---HEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHT- 161 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~V~~v~~--~~~~~~~~v~~---~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~- 161 (395)
...+++. +.+++++.++.+...+. ......|.... ++..+.||+||+|||+ ..+..|++||.+.. .+...
T Consensus 73 ~~~~~l~-~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs-~~~~~~~ipg~~~~--~v~~~~ 148 (352)
T PRK12770 73 EGVKELE-EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT-WKSRKLGIPGEDLP--GVYSAL 148 (352)
T ss_pred HHHHHHH-hCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCC-CCCCcCCCCCcccc--CceeHH
Confidence 4445444 44888888888866543 11112222221 1234789999999994 24677888886532 11111
Q ss_pred ------CCC-------CCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCe-EEEEEecCceeeeccccCCChhHHHHHHHh
Q 039923 162 ------STY-------KNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ-VSLVVRDKVHILPKKILGRSSFAISVWLLK 227 (395)
Q Consensus 162 ------~~~-------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ 227 (395)
... .......+++++|||+|.+|+|+|..|...|++ |+++.|++. .... . ...+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~-~~~~--~-------~~~~~~ 218 (352)
T PRK12770 149 EYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI-NEAP--A-------GKYEIE 218 (352)
T ss_pred HHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch-hhCC--C-------CHHHHH
Confidence 000 011123478999999999999999999888887 999998761 1000 0 000000
Q ss_pred hCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC----eE
Q 039923 228 WFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK----GA 301 (395)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v 301 (395)
.++.++++ +..+ +.++.+. .+
T Consensus 219 --------------------~l~~~gi~---------------------------------i~~~~~v~~i~~~~~~~~v 245 (352)
T PRK12770 219 --------------------RLIARGVE---------------------------------FLELVTPVRIIGEGRVEGV 245 (352)
T ss_pred --------------------HHHHcCCE---------------------------------EeeccCceeeecCCcEeEE
Confidence 11333332 2211 2222111 01
Q ss_pred E--------------------EeCCcEecCcEEEEcCCCCCCCCccccc-cccccccCCCCCCCCCCCCCCCCCCeEEEE
Q 039923 302 E--------------------FVNRTVKEFDSIILATGYRSNVSSWLKE-ASLFNQKNNNNPQDSYPKNWKGKNGVYSVG 360 (395)
Q Consensus 302 ~--------------------~~~g~~i~~D~vi~atG~~~~~~~~~~~-~~l~~~~~~g~~~~~~~~~~~~~~~iya~G 360 (395)
+ ..+++.+++|.+|+++|++|+. .+..+ .++. ++++|++.+| .+++++.|+||++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~-~l~~~~~g~~-~~~~g~i~vd-~~~~t~~~~vyaiG 322 (352)
T PRK12770 246 ELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP-PFAKECLGIE-LNRKGEIVVD-EKHMTSREGVFAAG 322 (352)
T ss_pred EEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc-hhhhcccCce-ecCCCcEeeC-CCcccCCCCEEEEc
Confidence 1 1233579999999999999987 55555 6887 7788999888 56788999999999
Q ss_pred ecccccc---cchhhHHHHHHHHHhhhcc
Q 039923 361 FARQGLL---GISMDAHKVADDIASQWNS 386 (395)
Q Consensus 361 d~~~~~~---~a~~~g~~~a~~i~~~~~~ 386 (395)
||+.++. .|+.+|+.+|.+|...|..
T Consensus 323 D~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 323 DVVTGPSKIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHhc
Confidence 9987655 8999999999999998853
No 56
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=4.5e-31 Score=264.75 Aligned_cols=292 Identities=20% Similarity=0.239 Sum_probs=188.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+||||||||+++|..|+++|++|+|||+...+||.+... ++.+. ...++.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~r---------lp~~~~~ 485 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG---------------IPEFR---------LPKKIVD 485 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCCC---------CCHHHHH
Confidence 45899999999999999999999999999999988888865421 11111 1134555
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCC---
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTY--- 164 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~--- 164 (395)
...+.+.+++++++.++.+. .. ++.++ ....||+||||||+ ..++.|++||.+.. + +.+...+
T Consensus 486 ~~~~~l~~~gv~~~~~~~v~--------~~--v~~~~l~~~~ydavvlAtGa-~~~~~l~ipG~~~~-g-V~~~~~~l~~ 552 (752)
T PRK12778 486 VEIENLKKLGVKFETDVIVG--------KT--ITIEELEEEGFKGIFIASGA-GLPNFMNIPGENSN-G-VMSSNEYLTR 552 (752)
T ss_pred HHHHHHHHCCCEEECCCEEC--------Cc--CCHHHHhhcCCCEEEEeCCC-CCCCCCCCCCCCCC-C-cEEHHHHHHH
Confidence 55566777899988886551 11 33444 45679999999995 25777888886531 1 1221111
Q ss_pred ----------CCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCe-EEEEEecCceeeeccccCCChhHHHHHHHhhCChhH
Q 039923 165 ----------KNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ-VSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDV 233 (395)
Q Consensus 165 ----------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 233 (395)
.+.....+++|+|||+|.+|+|+|..+.+.|++ ||++.|++...+|.... .+
T Consensus 553 ~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~-----e~------------ 615 (752)
T PRK12778 553 VNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLE-----EV------------ 615 (752)
T ss_pred HhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HH------------
Confidence 111234679999999999999999999999987 99999986222221100 00
Q ss_pred HHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhh--hcCCeE---EecC-ccEEecCe----EEE
Q 039923 234 VDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKI--KSGEIK---VVPG-IQKFTAKG----AEF 303 (395)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~---~~~~-v~~~~~~~----v~~ 303 (395)
..+.+.|++. .+.....+.. .++++. +..- ....+.++ +..
T Consensus 616 -------------~~~~~~GV~i----------------~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~ 666 (752)
T PRK12778 616 -------------KHAKEEGIEF----------------LTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAI 666 (752)
T ss_pred -------------HHHHHcCCEE----------------EecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceec
Confidence 0112233320 0000000000 001111 0000 00000000 111
Q ss_pred e-CCcEecCcEEEEcCCCCCCCCcccccc-ccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHH
Q 039923 304 V-NRTVKEFDSIILATGYRSNVSSWLKEA-SLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVAD 378 (395)
Q Consensus 304 ~-~g~~i~~D~vi~atG~~~~~~~~~~~~-~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~ 378 (395)
+ +..++++|.||+|+|+.|+. .++... ++. ++++|++.+| ++++|+.|||||+|||+.++. .|+.+|+.+|.
T Consensus 667 ~g~~~~i~~D~Vi~A~G~~p~~-~l~~~~~gl~-~~~~G~i~vd-~~~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~ 743 (752)
T PRK12778 667 PGSTFTVDVDLVIVSVGVSPNP-LVPSSIPGLE-LNRKGTIVVD-EEMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAA 743 (752)
T ss_pred CCCeEEEECCEEEECcCCCCCc-cccccccCce-ECCCCCEEeC-CCCCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHH
Confidence 1 12369999999999999997 455443 777 7888999998 566899999999999998765 89999999999
Q ss_pred HHHhhhcc
Q 039923 379 DIASQWNS 386 (395)
Q Consensus 379 ~i~~~~~~ 386 (395)
+|.++|.+
T Consensus 744 ~I~~~L~~ 751 (752)
T PRK12778 744 AIDEYLSS 751 (752)
T ss_pred HHHHHhcc
Confidence 99999865
No 57
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=1.8e-30 Score=247.09 Aligned_cols=298 Identities=16% Similarity=0.193 Sum_probs=187.4
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccc--ccCCcCceeeecCCcccc---CC--CCCCCCCCCCCCCHH
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLW--KLKIYDHLQLHLPKQFCQ---LP--YVPFPREYPAYPSGQ 84 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~--~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~ 84 (395)
+|+||||||+|+++|..+++.|.+|+|||++ .+||+- +-+.+....+.....+.. .. ....... ....+-+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNG-SISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCC-CCccCHH
Confidence 7999999999999999999999999999997 467742 222221111110000000 00 0000000 0012223
Q ss_pred HHHHHHH-----------HHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCCCCCCCCCCCC
Q 039923 85 QFITYME-----------AYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVATGENEVPVLPKIPGI 151 (395)
Q Consensus 85 ~~~~~~~-----------~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~~~~~p~~~g~ 151 (395)
.+..+.. ..+++.++++..+ ++..+ + .+.+.|+.++ ++++||+|||||| ++|..|++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~---~-~~~v~v~~~~~~~~~~~d~lviATG--s~p~~~p~~~~ 152 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFE---T-DHRVRVEYGDKEEVVDAEQFIIAAG--SEPTELPFAPF 152 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEc---c-CCEEEEeeCCCcEEEECCEEEEeCC--CCCCCCCCCCC
Confidence 3332222 2233335554322 22222 2 2555566544 5799999999999 67777777665
Q ss_pred CCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCCh
Q 039923 152 SEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPV 231 (395)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 231 (395)
+.. .+.++.... .....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ .++|..+. .+...
T Consensus 153 ~~~--~v~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~-----e~~~~------- 216 (458)
T PRK06912 153 DGK--WIINSKHAM-SLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDE-----DIAHI------- 216 (458)
T ss_pred CCC--eEEcchHHh-CccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccH-----HHHHH-------
Confidence 431 233332222 223357899999999999999999999999999999988 56654322 11111
Q ss_pred hHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC--eEEEe-CC
Q 039923 232 DVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK--GAEFV-NR 306 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~v~~~-~g 306 (395)
+.+.+++.+++++.+ |.+++.. .+.+. +|
T Consensus 217 ----------------------------------------------l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g 250 (458)
T PRK06912 217 ----------------------------------------------LREKLENDGVKIFTGAALKGLNSYKKQALFEYEG 250 (458)
T ss_pred ----------------------------------------------HHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECC
Confidence 122233334555544 5555433 23333 34
Q ss_pred --cEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHH
Q 039923 307 --TVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDI 380 (395)
Q Consensus 307 --~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i 380 (395)
.++++|.|++|+|.+|+...+ ++..++. .+++| +.+| .+++|+.|+|||+|||..++. .|..||+.+|.+|
T Consensus 251 ~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~-~~~~g-i~Vd-~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~ 327 (458)
T PRK06912 251 SIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQ-FSNKG-ISVN-EHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHA 327 (458)
T ss_pred ceEEEEeCEEEEecCCccCCCCCCchhcCce-ecCCC-EEeC-CCeecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHH
Confidence 369999999999999998543 4566777 66667 7787 678899999999999997654 8999999999999
Q ss_pred Hhh
Q 039923 381 ASQ 383 (395)
Q Consensus 381 ~~~ 383 (395)
.+.
T Consensus 328 ~g~ 330 (458)
T PRK06912 328 SGE 330 (458)
T ss_pred cCC
Confidence 753
No 58
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=1.6e-30 Score=255.71 Aligned_cols=295 Identities=18% Similarity=0.198 Sum_probs=190.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.++.. ++ .+....++.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------ip---------~~~~~~~~~~ 247 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------IP---------RFRLPESVID 247 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------CC---------CCCCCHHHHH
Confidence 35799999999999999999999999999999999998876432 11 1111234555
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCC----
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTY---- 164 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~---- 164 (395)
...+.+.+.|+++++++.+. .+ ++.++....||.||+|||++ .+..+.+||.+.. + ++....+
T Consensus 248 ~~~~~l~~~Gv~i~~~~~v~-~d---------v~~~~~~~~~DaVilAtGa~-~~~~~~ipG~~~~-g-v~~~~~~l~~~ 314 (652)
T PRK12814 248 ADIAPLRAMGAEFRFNTVFG-RD---------ITLEELQKEFDAVLLAVGAQ-KASKMGIPGEELP-G-VISGIDFLRNV 314 (652)
T ss_pred HHHHHHHHcCCEEEeCCccc-Cc---------cCHHHHHhhcCEEEEEcCCC-CCCCCCCCCcCcC-C-cEeHHHHHHHh
Confidence 55666777899888776541 11 22222223599999999952 2345678875432 2 1221111
Q ss_pred -CCCcCCCCCeEEEECCCcCHHHHHHHHhhCCC-eEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhh
Q 039923 165 -KNGVEFRASKVLVVGCGNSGMEISFDLCKNGA-QVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCS 242 (395)
Q Consensus 165 -~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (395)
.......+++|+|||+|.+|+|+|..+.+.|. +|+++.|++...+|.... .+ ..
T Consensus 315 ~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~-----ei----~~--------------- 370 (652)
T PRK12814 315 ALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRA-----EI----EE--------------- 370 (652)
T ss_pred hcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HH----HH---------------
Confidence 11223468999999999999999999998886 699999887323332110 00 00
Q ss_pred hhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhh-hcCCeEEecC-cc--EEecCe---EEEeCCc--EecCcE
Q 039923 243 RLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKI-KSGEIKVVPG-IQ--KFTAKG---AEFVNRT--VKEFDS 313 (395)
Q Consensus 243 ~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-v~--~~~~~~---v~~~~g~--~i~~D~ 313 (395)
....|++. .......+.. ..+++.+..- ++ +.+.++ ....+|+ .+++|.
T Consensus 371 ------a~~eGV~i----------------~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~ 428 (652)
T PRK12814 371 ------ALAEGVSL----------------RELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADT 428 (652)
T ss_pred ------HHHcCCcE----------------EeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCE
Confidence 01123320 0000000000 0111111000 00 000000 1111232 689999
Q ss_pred EEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHHhhhcccc
Q 039923 314 IILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIASQWNSET 388 (395)
Q Consensus 314 vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~~~~~~~~ 388 (395)
||+++|+.|+. .++...++. ++.+|++.+|+.+++|+.|||||+||++.++. .|+.+|+.+|.+|..+|.++.
T Consensus 429 VI~AiG~~p~~-~ll~~~gl~-~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 429 VISAIGQQVDP-PIAEAAGIG-TSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred EEECCCCcCCc-ccccccCcc-ccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999997 677777888 78889999996678899999999999997765 899999999999999998654
No 59
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.97 E-value=2.4e-30 Score=245.17 Aligned_cols=296 Identities=15% Similarity=0.146 Sum_probs=183.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc--ccccCCcCceeeecCCcccc---CCCCCCCCCCCCCCCHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS--LWKLKIYDHLQLHLPKQFCQ---LPYVPFPREYPAYPSGQ 84 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 84 (395)
.||++|||+|++|..+|..+ .|.+|+|||++ .+|| +++-|.+....+........ ...+..... ...++-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence 48999999999999986554 69999999985 6788 33334333222111110000 000100000 0011222
Q ss_pred HHHHHHHH------------HH---HHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCC
Q 039923 85 QFITYMEA------------YA---NHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKI 148 (395)
Q Consensus 85 ~~~~~~~~------------~~---~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~ 148 (395)
.++++... .. ++.+++++.++.+.. +.++|++.+ ++++||+|||||| ++|..|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~-------~~~~V~~~~g~~~~~d~lIiATG--s~p~~p~~ 148 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV-------GPRTLRTGDGEEITGDQIVIAAG--SRPYIPPA 148 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe-------cCCEEEECCCcEEEeCEEEEEEC--CCCCCCCC
Confidence 33332211 10 113455444332211 122355544 6799999999999 77877764
Q ss_pred CCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhh
Q 039923 149 PGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKW 228 (395)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~ 228 (395)
++... ..+........ ....+++++|||+|.+|+|+|..|.+.|++|+++++.+ .++|..+. .+...+
T Consensus 149 ~~~~~--~~~~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~-----~~~~~l--- 216 (452)
T TIGR03452 149 IADSG--VRYHTNEDIMR-LPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDE-----DISDRF--- 216 (452)
T ss_pred CCCCC--CEEEcHHHHHh-hhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCH-----HHHHHH---
Confidence 33221 11222222211 12247899999999999999999999999999999988 45543221 111110
Q ss_pred CChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEec--Ce--EE
Q 039923 229 FPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTA--KG--AE 302 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~--v~ 302 (395)
.+.. ..++.++.+ |.+++. .+ +.
T Consensus 217 --------------------------------------------------~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~ 245 (452)
T TIGR03452 217 --------------------------------------------------TEIA-KKKWDIRLGRNVTAVEQDGDGVTLT 245 (452)
T ss_pred --------------------------------------------------HHHH-hcCCEEEeCCEEEEEEEcCCeEEEE
Confidence 1111 123444433 555542 22 45
Q ss_pred EeCCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHH
Q 039923 303 FVNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVAD 378 (395)
Q Consensus 303 ~~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~ 378 (395)
+.+|+++++|.+++++|++|+...+ ++..++. ++++|++.+| ++++|+.|+|||+|||+..+. .|..||+.+|+
T Consensus 246 ~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~-~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ 323 (452)
T TIGR03452 246 LDDGSTVTADVLLVATGRVPNGDLLDAEAAGVE-VDEDGRIKVD-EYGRTSARGVWALGDVSSPYQLKHVANAEARVVKH 323 (452)
T ss_pred EcCCCEEEcCEEEEeeccCcCCCCcCchhcCee-ECCCCcEeeC-CCcccCCCCEEEeecccCcccChhHHHHHHHHHHH
Confidence 5678889999999999999998433 4566888 7889999999 678899999999999997654 79999999999
Q ss_pred HHHhh
Q 039923 379 DIASQ 383 (395)
Q Consensus 379 ~i~~~ 383 (395)
||.+.
T Consensus 324 ni~~~ 328 (452)
T TIGR03452 324 NLLHP 328 (452)
T ss_pred HhcCC
Confidence 99864
No 60
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=2.2e-30 Score=246.80 Aligned_cols=288 Identities=18% Similarity=0.202 Sum_probs=187.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.++.. + +.+....++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------i---------p~~~~~~~~~~ 197 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------I---------PDFKLEKEVID 197 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------C---------CcccCCHHHHH
Confidence 34799999999999999999999999999999999888765421 1 11112234555
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCC-----
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTST----- 163 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~----- 163 (395)
...+.+.+++++++.++.+.. + ++..+....||.||+|||+. .++.+.+||.+. .+ +.....
T Consensus 198 ~~~~~~~~~gv~~~~~~~v~~-~---------~~~~~~~~~~d~vvlAtGa~-~~~~l~ipG~~~-~g-V~~~~~~l~~~ 264 (471)
T PRK12810 198 RRIELMEAEGIEFRTNVEVGK-D---------ITAEELLAEYDAVFLGTGAY-KPRDLGIPGRDL-DG-VHFAMDFLIQN 264 (471)
T ss_pred HHHHHHHhCCcEEEeCCEECC-c---------CCHHHHHhhCCEEEEecCCC-CCCcCCCCCccC-CC-cEEHHHHHHHH
Confidence 556677788999888876631 1 11111235799999999952 366677888653 22 121100
Q ss_pred ---C-----CCCcCCCCCeEEEECCCcCHHHHHHHHhhCCC-eEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHH
Q 039923 164 ---Y-----KNGVEFRASKVLVVGCGNSGMEISFDLCKNGA-QVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVV 234 (395)
Q Consensus 164 ---~-----~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 234 (395)
. .......+++|+|||+|.+|+|+|..+...|. +|+.+.+.+ +|..... . ....+
T Consensus 265 ~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~~------~---~~~~~---- 328 (471)
T PRK12810 265 TRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRRN------K---NNPWP---- 328 (471)
T ss_pred HhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCccccc------c---ccCCc----
Confidence 0 11123468999999999999999998888876 688544332 1111100 0 00000
Q ss_pred HHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChh-hHhhhhcCCeEEecC--ccEEec----------CeE
Q 039923 235 DRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDG-AFAKIKSGEIKVVPG--IQKFTA----------KGA 301 (395)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~--v~~~~~----------~~v 301 (395)
.+... ..+.+.+.++.++.+ +.++.+ ..+
T Consensus 329 --------------------------------------~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~ 370 (471)
T PRK12810 329 --------------------------------------YWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRT 370 (471)
T ss_pred --------------------------------------ccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEE
Confidence 00000 011112222333322 333321 111
Q ss_pred EEeCC---------cEecCcEEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cc
Q 039923 302 EFVNR---------TVKEFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GI 369 (395)
Q Consensus 302 ~~~~g---------~~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a 369 (395)
.+.+| .++++|.||+++|.+|+...+++..++. ++++|++.+|+.+++|+.||||++|||+.++. .|
T Consensus 371 ~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~-~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~A 449 (471)
T PRK12810 371 ELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVE-LDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWA 449 (471)
T ss_pred EecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcc-cCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHH
Confidence 11122 4799999999999999865678888888 78889998875578899999999999997764 89
Q ss_pred hhhHHHHHHHHHhhhcccc
Q 039923 370 SMDAHKVADDIASQWNSET 388 (395)
Q Consensus 370 ~~~g~~~a~~i~~~~~~~~ 388 (395)
+.+|+.+|.+|..+|.++.
T Consensus 450 v~~G~~AA~~i~~~L~g~~ 468 (471)
T PRK12810 450 IAEGRQAARAIDAYLMGST 468 (471)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999997653
No 61
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=2.4e-30 Score=258.29 Aligned_cols=287 Identities=20% Similarity=0.216 Sum_probs=181.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+||||||||++||+.|++.|++|+|||+.+.+||..+.. .+.+. .+ .+..+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------IP~~r--------lp-~e~l~ 591 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------IPEFR--------IS-AESIQ 591 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------ccccC--------CC-HHHHH
Confidence 35799999999999999999999999999999999888865331 11111 11 34444
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCC--
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYK-- 165 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~-- 165 (395)
...+.+.+.|++++.++.. . ++.++ ....||+||+|||++ .+..+.++|... .+.....+.
T Consensus 592 ~~ie~l~~~GVe~~~g~~~-d-----------~~ve~l~~~gYDaVIIATGA~-~~~~l~I~G~~~---~v~~avefL~~ 655 (1012)
T TIGR03315 592 KDIELVKFHGVEFKYGCSP-D-----------LTVAELKNQGYKYVILAIGAW-KHGPLRLEGGGE---RVLKSLEFLRA 655 (1012)
T ss_pred HHHHHHHhcCcEEEEeccc-c-----------eEhhhhhcccccEEEECCCCC-CCCCCCcCCCCc---ceeeHHHHHHH
Confidence 4455666678887766321 0 11222 345699999999963 334456666432 112211111
Q ss_pred --C--CcCCCCCeEEEECCCcCHHHHHHHHhhC-CC-eEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHH
Q 039923 166 --N--GVEFRASKVLVVGCGNSGMEISFDLCKN-GA-QVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLL 239 (395)
Q Consensus 166 --~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~-g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (395)
+ .....+++|+|||+|.+|+|+|..+.+. |. +|+++.|++...+|.... .+.
T Consensus 656 ~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~e-----El~----------------- 713 (1012)
T TIGR03315 656 FKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASRE-----ELE----------------- 713 (1012)
T ss_pred hhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHH-----HHH-----------------
Confidence 1 1234689999999999999999998875 64 799999987333332111 000
Q ss_pred HhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC-ccEEecCe--EEEeCCc--EecCcEE
Q 039923 240 FCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG-IQKFTAKG--AEFVNRT--VKEFDSI 314 (395)
Q Consensus 240 ~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~~--v~~~~g~--~i~~D~v 314 (395)
.....|+.. ... .....+..+++.+..- +.+.+.++ ....+|+ ++++|.|
T Consensus 714 --------~aleeGVe~----------------~~~-~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~V 768 (1012)
T TIGR03315 714 --------EALEDGVDF----------------KEL-LSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTV 768 (1012)
T ss_pred --------HHHHcCCEE----------------EeC-CceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEE
Confidence 001123320 000 0000011122222110 00111111 1122343 6899999
Q ss_pred EEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHHhhh
Q 039923 315 ILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIASQW 384 (395)
Q Consensus 315 i~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~~~~ 384 (395)
|+|+|..|+. .+++..++. ++++|++.+|+..++|+.|||||+|||+.++. .|+.+|+.+|.+|.+..
T Consensus 769 IvAiG~~Pnt-~lle~~GL~-ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 769 IAAVGEQVDT-DLLQKNGIP-LDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred EEecCCcCCh-HHHHhcCcc-cCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 9999999997 677778888 78899999985457899999999999987665 89999999999998764
No 62
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=4.8e-30 Score=218.98 Aligned_cols=303 Identities=16% Similarity=0.238 Sum_probs=207.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccc--cCCcCceeeecC---CccccCCCCCCC------CCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWK--LKIYDHLQLHLP---KQFCQLPYVPFP------REY 77 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~--~~~~~~~~~~~~---~~~~~~~~~~~~------~~~ 77 (395)
..+|.+|||||.+|+++|++.++.|.++.|+|....+||+-- -+.......+.. ..+.+...+.++ .+|
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW 98 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW 98 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcH
Confidence 468999999999999999999999999999999888888422 121111111111 011111111111 122
Q ss_pred CCC-CCHHHHHHHHHHHHH----HcCCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCCCCCC
Q 039923 78 PAY-PSGQQFITYMEAYAN----HFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEVPVLPKIP 149 (395)
Q Consensus 78 ~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~p~~~ 149 (395)
..+ ..++.....+....+ +..++++.+ .....++ ..++|...+ ..++++++.|||| ++|.+|.+|
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G----~a~f~~~-~~v~V~~~d~~~~~Ytak~iLIAtG--g~p~~PnIp 171 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG----RARFVSP-GEVEVEVNDGTKIVYTAKHILIATG--GRPIIPNIP 171 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEee----eEEEcCC-CceEEEecCCeeEEEecceEEEEeC--CccCCCCCC
Confidence 211 133444444433333 223333222 1112221 444565555 4589999999999 899999999
Q ss_pred CCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhC
Q 039923 150 GISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWF 229 (395)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~ 229 (395)
|.+. ...+..+.+..+ .+++++|||+|++|+|+|.-++..|.+++++.|.. .+|...+.
T Consensus 172 G~E~----gidSDgff~Lee-~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~--------------- 230 (478)
T KOG0405|consen 172 GAEL----GIDSDGFFDLEE-QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDE--------------- 230 (478)
T ss_pred chhh----ccccccccchhh-cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhH---------------
Confidence 9763 255555555444 79999999999999999999999999999999998 55554332
Q ss_pred ChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC-----eEE
Q 039923 230 PVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK-----GAE 302 (395)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-----~v~ 302 (395)
++.+...+.++...|+++.. ++++... .+.
T Consensus 231 -------------------------------------------~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i 267 (478)
T KOG0405|consen 231 -------------------------------------------MISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVI 267 (478)
T ss_pred -------------------------------------------HHHHHHHHHhhhcceeecccccceeeeecCCCceEEE
Confidence 12222333344445666654 4444332 255
Q ss_pred EeCCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHH
Q 039923 303 FVNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVAD 378 (395)
Q Consensus 303 ~~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~ 378 (395)
...|....+|.++||+|.+|++..+ ++..|+. +|++|.+.+| .+.+|++|+||++||+.+..+ .|..+|+.+|+
T Consensus 268 ~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk-~~~~g~IivD-eYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~ 345 (478)
T KOG0405|consen 268 TSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVK-TDKNGAIIVD-EYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLAN 345 (478)
T ss_pred EeccccccccEEEEEecCCCCcccccchhccee-eCCCCCEEEe-ccccCCCCceEEeccccCcEecchHHHhhhhhHHH
Confidence 5667666799999999999999776 6777999 8999999999 889999999999999987766 99999999999
Q ss_pred HHHhhh
Q 039923 379 DIASQW 384 (395)
Q Consensus 379 ~i~~~~ 384 (395)
++.+..
T Consensus 346 rlF~~~ 351 (478)
T KOG0405|consen 346 RLFGGG 351 (478)
T ss_pred HhhcCC
Confidence 998854
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=2.2e-29 Score=256.31 Aligned_cols=295 Identities=19% Similarity=0.199 Sum_probs=188.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+||||||||+++|..|+++|++|+|||+...+||.++.. ++.+....++.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g------------------------ip~~rl~~e~~~ 484 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG------------------------IPSFRLPRDIID 484 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc------------------------CCccCCCHHHHH
Confidence 35799999999999999999999999999999998888754321 122222356677
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCC---
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTST--- 163 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~--- 163 (395)
...+.+.+.|++++.++.+. .. ++.++ ....||.||||||+ ..++.+++||.+. . .++....
T Consensus 485 ~~~~~l~~~Gv~~~~~~~vg--------~~--~~~~~l~~~~~yDaViIATGa-~~pr~l~IpG~~l-~-gV~~a~~fL~ 551 (1006)
T PRK12775 485 REVQRLVDIGVKIETNKVIG--------KT--FTVPQLMNDKGFDAVFLGVGA-GAPTFLGIPGEFA-G-QVYSANEFLT 551 (1006)
T ss_pred HHHHHHHHCCCEEEeCCccC--------Cc--cCHHHHhhccCCCEEEEecCC-CCCCCCCCCCcCC-C-CcEEHHHHHH
Confidence 77777888899998886541 11 22222 13569999999996 2477788998643 1 1222211
Q ss_pred -----------CCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCe-EEEEEecCceeeeccccCCChhHHHHHHHhhCCh
Q 039923 164 -----------YKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ-VSLVVRDKVHILPKKILGRSSFAISVWLLKWFPV 231 (395)
Q Consensus 164 -----------~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 231 (395)
+.+.....+++|+|||+|.+|+|+|..+.+.|.+ |+++.|+...-+|....
T Consensus 552 ~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~----------------- 614 (1006)
T PRK12775 552 RVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIE----------------- 614 (1006)
T ss_pred HHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHH-----------------
Confidence 1122234689999999999999999999998875 88888775211111000
Q ss_pred hHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhh--hcCCeE---EecC-ccEEecCe--EEE
Q 039923 232 DVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKI--KSGEIK---VVPG-IQKFTAKG--AEF 303 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~---~~~~-v~~~~~~~--v~~ 303 (395)
. ...+.+.||.. .+.....+.. +++++. +... ....+.++ ...
T Consensus 615 ---e----------~~~a~eeGI~~----------------~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~ 665 (1006)
T PRK12775 615 ---E----------IRHAKEEGIDF----------------FFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPM 665 (1006)
T ss_pred ---H----------HHHHHhCCCEE----------------EecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCcccc
Confidence 0 00112233320 0000000000 011111 1000 00001111 000
Q ss_pred eCC--cEecCcEEEEcCCCCCCCCccccc-cccccccCCCCCCCCC----CCCCCCCCCeEEEEecccccc---cchhhH
Q 039923 304 VNR--TVKEFDSIILATGYRSNVSSWLKE-ASLFNQKNNNNPQDSY----PKNWKGKNGVYSVGFARQGLL---GISMDA 373 (395)
Q Consensus 304 ~~g--~~i~~D~vi~atG~~~~~~~~~~~-~~l~~~~~~g~~~~~~----~~~~~~~~~iya~Gd~~~~~~---~a~~~g 373 (395)
.+| .++++|.||+++|+.|+. .++.. .++. ++++|++.+|. .+++|+.|||||+||++.++. .|+.+|
T Consensus 666 ~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~-l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~G 743 (1006)
T PRK12775 666 PTGEFKDLECDTVIYALGTKANP-IITQSTPGLA-LNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAG 743 (1006)
T ss_pred CCCceEEEEcCEEEECCCcCCCh-hhhhccCCcc-cCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHH
Confidence 122 369999999999999997 44443 3677 77889888874 367899999999999988766 899999
Q ss_pred HHHHHHHHhhhcccc
Q 039923 374 HKVADDIASQWNSET 388 (395)
Q Consensus 374 ~~~a~~i~~~~~~~~ 388 (395)
+.+|.+|..+|.+..
T Consensus 744 r~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 744 RRAARSIATYLRLGK 758 (1006)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999997643
No 64
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.97 E-value=3.7e-30 Score=219.20 Aligned_cols=189 Identities=35% Similarity=0.675 Sum_probs=136.8
Q ss_pred EEECCChHHHHHHHHHHHcCCC-EEEEecCCCcccccccCCcCceeeecCCcc---ccCCCCCC-C-------CCCCCCC
Q 039923 14 VIVGAGPSGLAAAACLKERGVP-SLIIEKESCLASLWKLKIYDHLQLHLPKQF---CQLPYVPF-P-------REYPAYP 81 (395)
Q Consensus 14 vIIG~G~aG~~~A~~l~~~g~~-v~lie~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~-~-------~~~~~~~ 81 (395)
+||||||+|+++|.+|.++|.+ ++|||+++.+||.|... ++..++..+..+ +.++.+.. . .....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 7999999999999999999998 99999999999999842 222233333322 22221110 0 0124567
Q ss_pred CHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEee
Q 039923 82 SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLH 160 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~ 160 (395)
..+++.+|+++++++++++++++++|+++++.+ +.|+|++.+ +++++++||+|||..+.|..|.++| ..+ ...+|
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g-~~~-~~~~h 155 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG--DGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPG-SAF-RPIIH 155 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEET--TTEEEEETTS-EEEEEEEEE---SSCSB---S-TT-GGC-SEEEE
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEec--cEEEEEEEecceeeeeeEEEeeeccCCCCcccccc-ccc-cceEe
Confidence 899999999999999999999999999999997 669999998 5999999999999888999999998 212 26789
Q ss_pred cCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCce
Q 039923 161 TSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVH 207 (395)
Q Consensus 161 ~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~ 207 (395)
+..+.+...+.+++|+|||+|.||+|++..|++.|++|+++.|++.|
T Consensus 156 ~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 156 SADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp GGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred hhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 98888888889999999999999999999999999999999999854
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=2.4e-29 Score=248.58 Aligned_cols=294 Identities=17% Similarity=0.241 Sum_probs=187.3
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+||||||+|+++|..|++.|++|+|||+.+.+||.+... . +.+....++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------i---------p~~~l~~~~~~ 381 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------I---------PAFKLDKSLLA 381 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------C---------CCccCCHHHHH
Confidence 45799999999999999999999999999999999998865432 1 11112244556
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeec-------
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHT------- 161 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~------- 161 (395)
...+.++++|++++.++.|.. . ++..+....||.|++|||++ .+..+.++|.+. .+ +...
T Consensus 382 ~~~~~~~~~Gv~~~~~~~v~~-------~---i~~~~~~~~~DavilAtGa~-~~~~l~i~g~~~-~G-v~~a~~~l~~~ 448 (654)
T PRK12769 382 RRREIFSAMGIEFELNCEVGK-------D---ISLESLLEDYDAVFVGVGTY-RSMKAGLPNEDA-PG-VYDALPFLIAN 448 (654)
T ss_pred HHHHHHHHCCeEEECCCEeCC-------c---CCHHHHHhcCCEEEEeCCCC-CCCCCCCCCCCC-CC-eEEhHHHHHHH
Confidence 566777788999888876621 0 11112124699999999963 344456676543 12 1110
Q ss_pred -------CCCCC--CcCCCCCeEEEECCCcCHHHHHHHHhhCCC-eEEEEEecCceeeeccccCCChhHHHHHHHhhCCh
Q 039923 162 -------STYKN--GVEFRASKVLVVGCGNSGMEISFDLCKNGA-QVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPV 231 (395)
Q Consensus 162 -------~~~~~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 231 (395)
....+ .....+++|+|||+|.+|+|+|..+.+.|. +|+++.|++...+|.... ..
T Consensus 449 ~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~----------e~----- 513 (654)
T PRK12769 449 TKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK----------EV----- 513 (654)
T ss_pred HhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH----------HH-----
Confidence 00111 112467899999999999999999888886 699999886222232110 00
Q ss_pred hHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhh--hcCCe---EEecC-ccEEecCe---EE
Q 039923 232 DVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKI--KSGEI---KVVPG-IQKFTAKG---AE 302 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v---~~~~~-v~~~~~~~---v~ 302 (395)
..+.+.|++. .+.....+.. +++++ .+... ..+.+.++ ..
T Consensus 514 ---------------~~~~~~Gv~~----------------~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~ 562 (654)
T PRK12769 514 ---------------KNAREEGANF----------------EFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPV 562 (654)
T ss_pred ---------------HHHHHcCCeE----------------EeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcce
Confidence 0112333320 0000000000 01111 11000 00000000 01
Q ss_pred EeCC--cEecCcEEEEcCCCCCCCCccccccccccccCCCCCCCCCC---CCCCCCCCeEEEEecccccc---cchhhHH
Q 039923 303 FVNR--TVKEFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYP---KNWKGKNGVYSVGFARQGLL---GISMDAH 374 (395)
Q Consensus 303 ~~~g--~~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~---~~~~~~~~iya~Gd~~~~~~---~a~~~g~ 374 (395)
...| .++++|.||+|+|+.|+...+++..++. ++++|++.+|.. +++|+.|||||+||+..++. .|+.+|+
T Consensus 563 ~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~-~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr 641 (654)
T PRK12769 563 PIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVT-VDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGR 641 (654)
T ss_pred eCCCceEEEECCEEEECccCCCCccccccccCCc-CCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHH
Confidence 1112 2699999999999999865677888888 888999888732 47899999999999998766 8999999
Q ss_pred HHHHHHHhhhcc
Q 039923 375 KVADDIASQWNS 386 (395)
Q Consensus 375 ~~a~~i~~~~~~ 386 (395)
.+|.+|..+|..
T Consensus 642 ~AA~~I~~~L~~ 653 (654)
T PRK12769 642 HAAQGIIDWLGV 653 (654)
T ss_pred HHHHHHHHHhCc
Confidence 999999998864
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=2.6e-29 Score=238.44 Aligned_cols=292 Identities=17% Similarity=0.252 Sum_probs=186.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+||||||+|+++|..|+++|++|+++|+.+.+||.++.. . +.+....++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------I---------PSFKLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------C---------ccccCCHHHHH
Confidence 45799999999999999999999999999999999888865431 1 11112245666
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecC------
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTS------ 162 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~------ 162 (395)
...+.+++.|++++.+++|..- ++.++....||.||+|||+. .+..+++||.+.. + +.+..
T Consensus 196 ~~~~~~~~~Gv~~~~~~~v~~~----------~~~~~~~~~~D~vilAtGa~-~~~~~~i~g~~~~-g-V~~a~~~l~~~ 262 (467)
T TIGR01318 196 RRREIFTAMGIEFHLNCEVGRD----------ISLDDLLEDYDAVFLGVGTY-RSMRGGLPGEDAP-G-VLQALPFLIAN 262 (467)
T ss_pred HHHHHHHHCCCEEECCCEeCCc----------cCHHHHHhcCCEEEEEeCCC-CCCcCCCCCcCCC-C-cEEHHHHHHHH
Confidence 6677788889999888877210 12222224699999999953 2234567775531 1 11100
Q ss_pred -----CCC-----CCcCCCCCeEEEECCCcCHHHHHHHHhhCCC-eEEEEEecCceeeeccccCCChhHHHHHHHhhCCh
Q 039923 163 -----TYK-----NGVEFRASKVLVVGCGNSGMEISFDLCKNGA-QVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPV 231 (395)
Q Consensus 163 -----~~~-----~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 231 (395)
... ......+++++|||+|.+|++.|..+.+.|. +||++.|++...+|.... . ..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~-----e-----~~---- 328 (467)
T TIGR01318 263 TRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR-----E-----VA---- 328 (467)
T ss_pred HHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH-----H-----HH----
Confidence 000 0112357999999999999999999999885 799999987322332110 0 00
Q ss_pred hHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhh---cCCe---EEecC-ccEEecCe---E
Q 039923 232 DVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIK---SGEI---KVVPG-IQKFTAKG---A 301 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v---~~~~~-v~~~~~~~---v 301 (395)
.+.+.|+.. ..+.. ...+. ++++ ++... ..+.+.++ .
T Consensus 329 ----------------~~~~~GV~~----------------~~~~~-~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~ 375 (467)
T TIGR01318 329 ----------------NAREEGVEF----------------LFNVQ-PVYIECDEDGRVTGVGLVRTALGEPDADGRRRP 375 (467)
T ss_pred ----------------HHHhcCCEE----------------EecCC-cEEEEECCCCeEEEEEEEEEEecccCCCCCccc
Confidence 112233320 00000 00000 0111 11000 00000000 0
Q ss_pred EE--eCCcEecCcEEEEcCCCCCCCCccccccccccccCCCCCCCCC---CCCCCCCCCeEEEEecccccc---cchhhH
Q 039923 302 EF--VNRTVKEFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSY---PKNWKGKNGVYSVGFARQGLL---GISMDA 373 (395)
Q Consensus 302 ~~--~~g~~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~---~~~~~~~~~iya~Gd~~~~~~---~a~~~g 373 (395)
.. .+..++++|.||+++|++|+...+++..++. ++++|++.+|+ .+++|+.++||++||++.++. .|+.+|
T Consensus 376 ~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~-~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G 454 (467)
T TIGR01318 376 VPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGIT-LDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEG 454 (467)
T ss_pred eecCCceEEEECCEEEECCcCCCCccccccccCcc-CCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHH
Confidence 00 1223789999999999999865677777888 78889888873 456789999999999998765 899999
Q ss_pred HHHHHHHHhhhc
Q 039923 374 HKVADDIASQWN 385 (395)
Q Consensus 374 ~~~a~~i~~~~~ 385 (395)
+.+|.+|..+|.
T Consensus 455 ~~aA~~i~~~L~ 466 (467)
T TIGR01318 455 RQAAQGILDWLG 466 (467)
T ss_pred HHHHHHHHHHhc
Confidence 999999998774
No 67
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=4.9e-28 Score=238.19 Aligned_cols=295 Identities=15% Similarity=0.205 Sum_probs=188.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+++... .+....++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip------------------------~~~l~~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIP------------------------PFKLDKTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCC------------------------cccCCHHHHH
Confidence 3589999999999999999999999999999999999987654211 1111245556
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeec-------
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHT------- 161 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~------- 161 (395)
...+.+.+.|++++++++|.. . ++..+....||.|++|||++ .+..+.+||.+. .+. +..
T Consensus 365 ~~~~~~~~~Gv~~~~~~~v~~-------~---~~~~~l~~~~DaV~latGa~-~~~~~~i~g~~~-~gv-~~a~~~l~~~ 431 (639)
T PRK12809 365 QRREIFTAMGIDFHLNCEIGR-------D---ITFSDLTSEYDAVFIGVGTY-GMMRADLPHEDA-PGV-IQALPFLTAH 431 (639)
T ss_pred HHHHHHHHCCeEEEcCCccCC-------c---CCHHHHHhcCCEEEEeCCCC-CCCCCCCCCCcc-CCc-EeHHHHHHHH
Confidence 566777888999988876621 0 22222234699999999963 344556777543 221 110
Q ss_pred ----CCCCC-----CcCCCCCeEEEECCCcCHHHHHHHHhhCCC-eEEEEEecCceeeeccccCCChhHHHHHHHhhCCh
Q 039923 162 ----STYKN-----GVEFRASKVLVVGCGNSGMEISFDLCKNGA-QVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPV 231 (395)
Q Consensus 162 ----~~~~~-----~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 231 (395)
..... .....+++++|+|+|.+|++.|..+.+.|. +||++.|++...+|.... .+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~-----e~~--------- 497 (639)
T PRK12809 432 TRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK-----EVV--------- 497 (639)
T ss_pred HHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HHH---------
Confidence 00100 123468999999999999999999888885 799999886222222110 000
Q ss_pred hHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhh--hcCCeEEecC--cc--EEecCe---EE
Q 039923 232 DVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKI--KSGEIKVVPG--IQ--KFTAKG---AE 302 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~--v~--~~~~~~---v~ 302 (395)
.....|++. .+.....+.. +++++.-..- ++ +.+.++ ..
T Consensus 498 ----------------~a~~eGv~~----------------~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~ 545 (639)
T PRK12809 498 ----------------NAREEGVEF----------------QFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPR 545 (639)
T ss_pred ----------------HHHHcCCeE----------------EeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccce
Confidence 012223320 0000000000 0111210000 00 000000 11
Q ss_pred E--eCCcEecCcEEEEcCCCCCCCCccccccccccccCCCCCCCCC---CCCCCCCCCeEEEEecccccc---cchhhHH
Q 039923 303 F--VNRTVKEFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSY---PKNWKGKNGVYSVGFARQGLL---GISMDAH 374 (395)
Q Consensus 303 ~--~~g~~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~---~~~~~~~~~iya~Gd~~~~~~---~a~~~g~ 374 (395)
. .+..++++|.||+++|+.|+...+++..++. ++++|++.+|+ .+++|+.|+|||+||+..++. .|+.+|+
T Consensus 546 ~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~-~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr 624 (639)
T PRK12809 546 PVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIK-LDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGR 624 (639)
T ss_pred ecCCceEEEECCEEEECcCCCCCccccccccCcc-cCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHH
Confidence 1 1223789999999999999765677778888 78889988763 247789999999999998765 8999999
Q ss_pred HHHHHHHhhhccc
Q 039923 375 KVADDIASQWNSE 387 (395)
Q Consensus 375 ~~a~~i~~~~~~~ 387 (395)
.+|.+|..+|+..
T Consensus 625 ~AA~~i~~~l~~~ 637 (639)
T PRK12809 625 QAARDMLTLFDTK 637 (639)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998654
No 68
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.96 E-value=2.5e-27 Score=225.72 Aligned_cols=306 Identities=19% Similarity=0.199 Sum_probs=186.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||..... . +.+....++..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 197 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------------I---------PNMKLDKAIVD 197 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------------C---------CCccCCHHHHH
Confidence 34799999999999999999999999999999998888754321 1 11111234555
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCC-----
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTST----- 163 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~----- 163 (395)
...+.+++.|++++.++.|. .+ ++.+.....||.||+|||++ .+..+++||.+. .+ +.....
T Consensus 198 ~~~~~~~~~Gv~~~~~~~v~-~~---------~~~~~~~~~~d~VilAtGa~-~~~~l~i~G~~~-~g-V~~~~~~l~~~ 264 (485)
T TIGR01317 198 RRIDLLSAEGIDFVTNTEIG-VD---------ISADELKEQFDAVVLAGGAT-KPRDLPIPGREL-KG-IHYAMEFLPSA 264 (485)
T ss_pred HHHHHHHhCCCEEECCCEeC-Cc---------cCHHHHHhhCCEEEEccCCC-CCCcCCCCCcCC-CC-cEeHHHHHHHH
Confidence 55566777899998888773 11 11111235799999999952 367788888653 22 111100
Q ss_pred ---CC-------CCcCCCCCeEEEECCCcCHHHHHHHHhhCC-CeEEEEEecCceeeeccccCCChhHHHHHHHhhCChh
Q 039923 164 ---YK-------NGVEFRASKVLVVGCGNSGMEISFDLCKNG-AQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVD 232 (395)
Q Consensus 164 ---~~-------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
.. ......+++|+|||+|.+|+|.|..+.+.+ .+|+++++.+ ..++..... ..+|.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~-~~~~~~~~~-----------~~~~~~ 332 (485)
T TIGR01317 265 TKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP-KPPEARAKD-----------NPWPEW 332 (485)
T ss_pred hhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC-CChhhcccc-----------cCCCcc
Confidence 00 111246899999999999999988877776 5799998876 332211100 000000
Q ss_pred H----HHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhh---cCCeEEecC--cc-EEecCe--
Q 039923 233 V----VDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIK---SGEIKVVPG--IQ-KFTAKG-- 300 (395)
Q Consensus 233 ~----~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~--v~-~~~~~~-- 300 (395)
. .+..... .....|+.. ..+... ...+. ++.+.-..- ++ ..++++
T Consensus 333 ~~~~e~~~a~~e-------~~~~~gv~~---------------~~~~~~-~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~ 389 (485)
T TIGR01317 333 PRVYRVDYAHEE-------AAAHYGRDP---------------REYSIL-TKEFIGDDEGKVTALRTVRVEWKKSQDGKW 389 (485)
T ss_pred chhhhhHHHHHh-------hhhhcCccc---------------eEEecC-cEEEEEcCCCeEEEEEEEEEEeccCCCCCc
Confidence 0 0000000 001111110 000000 00000 011110000 00 000111
Q ss_pred -EEE--eCCcEecCcEEEEcCCCC-CCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhH
Q 039923 301 -AEF--VNRTVKEFDSIILATGYR-SNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDA 373 (395)
Q Consensus 301 -v~~--~~g~~i~~D~vi~atG~~-~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g 373 (395)
... .+..++++|.||+++|+. |+. .+++..++. ++++|++.+++.+++|+.|||||+|||+.++. .|+.+|
T Consensus 390 ~p~~~~g~~~~i~~D~Vi~AiG~~~p~~-~~~~~~gl~-~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G 467 (485)
T TIGR01317 390 QFVEIPGSEEVFEADLVLLAMGFVGPEQ-ILLDDFGVK-KTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEG 467 (485)
T ss_pred cceecCCceEEEECCEEEEccCcCCCcc-ccccccCcc-cCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHH
Confidence 111 122379999999999997 766 677778888 77889886554788899999999999987765 899999
Q ss_pred HHHHHHHHhhhcccc
Q 039923 374 HKVADDIASQWNSET 388 (395)
Q Consensus 374 ~~~a~~i~~~~~~~~ 388 (395)
+.+|.+|..+|.++.
T Consensus 468 ~~AA~~i~~~L~g~~ 482 (485)
T TIGR01317 468 RKAAAAVDRYLMGSS 482 (485)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998654
No 69
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=214.30 Aligned_cols=265 Identities=22% Similarity=0.306 Sum_probs=189.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC--CEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGV--PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~--~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
...++|||+|++|..|+.++.+.|. +++++-++..++ |+..++ +...... ...+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~L--s~~~~~~--------------~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRARL--SKFLLTV--------------GEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchhc--ccceeec--------------ccccc
Confidence 4779999999999999999999985 788887776433 333221 1111100 01112
Q ss_pred HHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCC
Q 039923 88 TYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKN 166 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~ 166 (395)
....++.+++++++++++.|+.++... +. |.+.+ +.+.|++|+|||| +.++.|++||.+. ..+....+..+
T Consensus 131 ~r~~e~Yke~gIe~~~~t~v~~~D~~~--K~--l~~~~Ge~~kys~LilATG--s~~~~l~~pG~~~--~nv~~ireied 202 (478)
T KOG1336|consen 131 KRTPEFYKEKGIELILGTSVVKADLAS--KT--LVLGNGETLKYSKLIIATG--SSAKTLDIPGVEL--KNVFYLREIED 202 (478)
T ss_pred ccChhhHhhcCceEEEcceeEEeeccc--cE--EEeCCCceeecceEEEeec--CccccCCCCCccc--cceeeeccHHH
Confidence 222345667799999999999999987 43 66665 9999999999999 6889999999873 22333333222
Q ss_pred Cc-----CCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHh
Q 039923 167 GV-----EFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFC 241 (395)
Q Consensus 167 ~~-----~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (395)
.. ......|+++|+|..|+|++..|...+++||++++.+ +.+|+... . .+...
T Consensus 203 a~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf~-~---~i~~~----------------- 260 (478)
T KOG1336|consen 203 ANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLFG-P---SIGQF----------------- 260 (478)
T ss_pred HHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhhh-H---HHHHH-----------------
Confidence 11 1247789999999999999999999999999999999 77775222 0 11111
Q ss_pred hhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC------eEEEeCCcEecCcE
Q 039923 242 SRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK------GAEFVNRTVKEFDS 313 (395)
Q Consensus 242 ~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~------~v~~~~g~~i~~D~ 313 (395)
+...+++.+|.+..+ +.++++. .+.+.||+++++|+
T Consensus 261 ------------------------------------~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adl 304 (478)
T KOG1336|consen 261 ------------------------------------YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADL 304 (478)
T ss_pred ------------------------------------HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCe
Confidence 222233334444432 4444332 37889999999999
Q ss_pred EEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc
Q 039923 314 IILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL 367 (395)
Q Consensus 314 vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~ 367 (395)
||+++|.+|++ .+++. +.. .+++|++.+| ..++++.|||||+||++..+.
T Consensus 305 vv~GiG~~p~t-~~~~~-g~~-~~~~G~i~V~-~~f~t~~~~VyAiGDva~fp~ 354 (478)
T KOG1336|consen 305 VVVGIGIKPNT-SFLEK-GIL-LDSKGGIKVD-EFFQTSVPNVYAIGDVATFPL 354 (478)
T ss_pred EEEeecccccc-ccccc-cce-ecccCCEeeh-hceeeccCCcccccceeeccc
Confidence 99999999998 66665 566 7899999999 899999999999999987665
No 70
>PRK13984 putative oxidoreductase; Provisional
Probab=99.95 E-value=1.1e-27 Score=235.48 Aligned_cols=292 Identities=17% Similarity=0.196 Sum_probs=178.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+|||+|++|+++|..|.+.|++|+|+|+.+..||.+... . +.+....++..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i---------~~~~~~~~~~~ 337 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------I---------PSYRLPDEALD 337 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------C---------CcccCCHHHHH
Confidence 45789999999999999999999999999999999888754321 1 11111244455
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCC---
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYK--- 165 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~--- 165 (395)
...+.+++.+++++.++.|.. + ++.+.....||+||+|||+ ..++.+++||.+.. + +.....+.
T Consensus 338 ~~~~~~~~~gv~~~~~~~v~~-~---------~~~~~~~~~yD~vilAtGa-~~~r~l~i~G~~~~-g-v~~a~~~l~~~ 404 (604)
T PRK13984 338 KDIAFIEALGVKIHLNTRVGK-D---------IPLEELREKHDAVFLSTGF-TLGRSTRIPGTDHP-D-VIQALPLLREI 404 (604)
T ss_pred HHHHHHHHCCcEEECCCEeCC-c---------CCHHHHHhcCCEEEEEcCc-CCCccCCCCCcCCc-C-eEeHHHHHHHH
Confidence 555677778999988887732 0 1111223579999999995 23567788886531 1 12211111
Q ss_pred ------CC-cCCCCCeEEEECCCcCHHHHHHHHhhCCC------eEEEEEecC-ceeeeccccCCChhHHHHHHHhhCCh
Q 039923 166 ------NG-VEFRASKVLVVGCGNSGMEISFDLCKNGA------QVSLVVRDK-VHILPKKILGRSSFAISVWLLKWFPV 231 (395)
Q Consensus 166 ------~~-~~~~~~~v~VvG~G~~a~e~a~~l~~~g~------~V~~~~r~~-~~~~p~~~~~~~~~~~~~~~~~~~~~ 231 (395)
+. ....+++|+|||||.+|+|+|..+.+.++ +|+++.... ...+|.... .
T Consensus 405 ~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~-----e----------- 468 (604)
T PRK13984 405 RDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADME-----E----------- 468 (604)
T ss_pred HhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHH-----H-----------
Confidence 00 11247899999999999999999987643 678764331 111111100 0
Q ss_pred hHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhh-hcCCeEEec--CccE-EecCe---E--E
Q 039923 232 DVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKI-KSGEIKVVP--GIQK-FTAKG---A--E 302 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~--~v~~-~~~~~---v--~ 302 (395)
. . ...+.|+.. ..+....+.. .++++.-.. .+.. .+.++ . .
T Consensus 469 -----~-~--------~~~~~GV~i----------------~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~ 518 (604)
T PRK13984 469 -----I-E--------EGLEEGVVI----------------YPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFD 518 (604)
T ss_pred -----H-H--------HHHHcCCEE----------------EeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceec
Confidence 0 0 001223320 0000000000 011111100 0000 00011 0 0
Q ss_pred EeCCcEecCcEEEEcCCCCCCCCcccccc--ccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc--cchhhHHHHHH
Q 039923 303 FVNRTVKEFDSIILATGYRSNVSSWLKEA--SLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL--GISMDAHKVAD 378 (395)
Q Consensus 303 ~~~g~~i~~D~vi~atG~~~~~~~~~~~~--~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~--~a~~~g~~~a~ 378 (395)
..+..++++|.||+++|++|+...+..++ ++. . ++|++.+| .+++|+.|+|||+||++.++. .|+.+|+.+|.
T Consensus 519 ~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~-~-~~G~i~vd-~~~~Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~ 595 (604)
T PRK13984 519 ESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLE-F-VRGRILTN-EYGQTSIPWLFAGGDIVHGPDIIHGVADGYWAAE 595 (604)
T ss_pred CCceEEEECCEEEEeeCCCCChhhhhhhhccCcc-c-cCCeEEeC-CCCccCCCCEEEecCcCCchHHHHHHHHHHHHHH
Confidence 11234799999999999999974333333 354 2 57888888 678899999999999998876 99999999999
Q ss_pred HHHhhhcc
Q 039923 379 DIASQWNS 386 (395)
Q Consensus 379 ~i~~~~~~ 386 (395)
+|..+|.+
T Consensus 596 ~I~~~L~~ 603 (604)
T PRK13984 596 GIDMYLRK 603 (604)
T ss_pred HHHHHhcc
Confidence 99999865
No 71
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.95 E-value=1.5e-27 Score=225.89 Aligned_cols=271 Identities=20% Similarity=0.282 Sum_probs=185.0
Q ss_pred HHHHHHHHcC--CCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCC-CCHHHHHHH-HHHHHHHcCC
Q 039923 24 AAAACLKERG--VPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAY-PSGQQFITY-MEAYANHFEI 99 (395)
Q Consensus 24 ~~A~~l~~~g--~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~ 99 (395)
+||.+|.+.+ .+|+|||+++.... ..+ ..+.+ ..+. ...+++..+ .+.++.++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~--~~~--------------~l~~~-----~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSF--ANC--------------GLPYV-----IGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeE--EcC--------------CCCeE-----eccccCCHHHcccCCHHHHHHhcCC
Confidence 4788888864 68999999874321 000 00000 0111 112333333 2445577899
Q ss_pred ccccCceEEEEEEcCCCCcEEEEEcc--EEEE--eCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCCCc-------
Q 039923 100 EPLLGQEVQWAKYDAAMGHWRVKTHE--YEFM--CRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGV------- 168 (395)
Q Consensus 100 ~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~--~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~------- 168 (395)
+++.+++|+.++..+ +.+.+...+ +.+. ||+||+||| +.|..|++||++.. .++......+..
T Consensus 60 ~~~~~~~V~~id~~~--~~v~~~~~~~~~~~~~~yd~lIiATG--~~p~~~~i~G~~~~--~v~~~~~~~~~~~~~~~l~ 133 (427)
T TIGR03385 60 DVKTNHEVIEVNDER--QTVVVRNNKTNETYEESYDYLILSPG--ASPIVPNIEGINLD--IVFTLRNLEDTDAIKQYID 133 (427)
T ss_pred eEEecCEEEEEECCC--CEEEEEECCCCCEEecCCCEEEECCC--CCCCCCCCCCcCCC--CEEEECCHHHHHHHHHHHh
Confidence 988899999998766 665555432 4677 999999999 68888889987521 122222211110
Q ss_pred CCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceee-eccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhcc
Q 039923 169 EFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHIL-PKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLG 247 (395)
Q Consensus 169 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (395)
...+++++|||+|.+|+|+|..|.+.|++|+++.+.+ .++ +.... ....
T Consensus 134 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~~~~~~~~-----~~~~------------------------ 183 (427)
T TIGR03385 134 KNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE-RILNKLFDE-----EMNQ------------------------ 183 (427)
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccCccccCH-----HHHH------------------------
Confidence 1357899999999999999999999999999999887 332 21110 1111
Q ss_pred chhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecCe--EEEeCCcEecCcEEEEcCCCCCC
Q 039923 248 DTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAKG--AEFVNRTVKEFDSIILATGYRSN 323 (395)
Q Consensus 248 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~--v~~~~g~~i~~D~vi~atG~~~~ 323 (395)
.+.+.+++.+|++..+ |.+++..+ +.+.+|+++++|.+|+|+|.+|+
T Consensus 184 -----------------------------~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 184 -----------------------------IVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred -----------------------------HHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 1122233345555543 66665543 36678889999999999999999
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccc-----------cc--cchhhHHHHHHHHHhh
Q 039923 324 VSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQG-----------LL--GISMDAHKVADDIASQ 383 (395)
Q Consensus 324 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-----------~~--~a~~~g~~~a~~i~~~ 383 (395)
. .+++..++. .+++|++.+| ++++|+.|+|||+|||+.. +. .|..||+.+|+||.+.
T Consensus 235 ~-~~l~~~gl~-~~~~G~i~vd-~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 235 S-ELAKDSGLK-LGETGAIWVN-EKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred H-HHHHhcCcc-cCCCCCEEEC-CCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 7 677888888 7888999998 6788999999999999853 11 8899999999999865
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=1.9e-26 Score=216.22 Aligned_cols=328 Identities=16% Similarity=0.139 Sum_probs=183.3
Q ss_pred CCCCCeEEECCChHHHHHHHHHHH--cCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKE--RGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQ 85 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~--~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
...++|+||||||||++||..|++ .|++|+|||+.+.+||+++.... +.+.....
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k~ 80 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETKN 80 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhHH
Confidence 345799999999999999999997 69999999999999887664321 22233345
Q ss_pred HHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCC-
Q 039923 86 FITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTY- 164 (395)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~- 164 (395)
+...+.+.+...+++++.+..|. . .++.++-...||.||+|||++ .++.+.+||.+.. + ++...++
T Consensus 81 v~~~~~~~~~~~~v~~~~nv~vg--------~--dvtl~~L~~~yDaVIlAtGa~-~~~~l~IpG~d~~-g-V~~a~~fl 147 (491)
T PLN02852 81 VTNQFSRVATDDRVSFFGNVTLG--------R--DVSLSELRDLYHVVVLAYGAE-SDRRLGIPGEDLP-G-VLSAREFV 147 (491)
T ss_pred HHHHHHHHHHHCCeEEEcCEEEC--------c--cccHHHHhhhCCEEEEecCCC-CCCCCCCCCCCCC-C-eEEHHHHH
Confidence 56666677777788877775551 1 144444234799999999953 2356678886531 1 1221111
Q ss_pred ---------C--CCcCCCCCeEEEECCCcCHHHHHHHHhhC--------------------C-CeEEEEEecCceeeecc
Q 039923 165 ---------K--NGVEFRASKVLVVGCGNSGMEISFDLCKN--------------------G-AQVSLVVRDKVHILPKK 212 (395)
Q Consensus 165 ---------~--~~~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------------g-~~V~~~~r~~~~~~p~~ 212 (395)
. ......+++|+|||+|.+|+|+|..|.+. + .+|+++.|+...-.+.
T Consensus 148 ~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~f- 226 (491)
T PLN02852 148 WWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAAC- 226 (491)
T ss_pred HHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCC-
Confidence 0 00123589999999999999999998764 4 4699999998111010
Q ss_pred ccCCChhHHHHHHHhhCChhHH----HHH-----------HHHhhhhhccchhhcCCCCCC---CCCCcccCCCCCCccc
Q 039923 213 ILGRSSFAISVWLLKWFPVDVV----DRF-----------LLFCSRLVLGDTKQIGIQRPK---MGPLQWKNSVGKTPVL 274 (395)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~----~~~-----------~~~~~~~~~~~~~~~gi~~~~---~~~~~~~~~~~~~~~~ 274 (395)
....+. .+. .++.... ..+ ...........+.+.-...+. .++..+.......|.
T Consensus 227 ----t~~Elr-el~-~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~- 299 (491)
T PLN02852 227 ----TAKELR-ELL-GLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPT- 299 (491)
T ss_pred ----CHHHHH-HHh-ccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCe-
Confidence 000110 000 0111000 000 000000000001100000000 000000000111110
Q ss_pred ChhhHhhh--hc--CC---eEEecC-ccEEe--cCeEEEeCC--cEecCcEEEEcCCCC--CCCCc-cccccccccccCC
Q 039923 275 DDGAFAKI--KS--GE---IKVVPG-IQKFT--AKGAEFVNR--TVKEFDSIILATGYR--SNVSS-WLKEASLFNQKNN 339 (395)
Q Consensus 275 ~~~~~~~~--~~--~~---v~~~~~-v~~~~--~~~v~~~~g--~~i~~D~vi~atG~~--~~~~~-~~~~~~l~~~~~~ 339 (395)
+.+ .+ ++ +.+..+ +..-. +......+| +.++||.||.+.|++ |.... |....++. .|.+
T Consensus 300 -----ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~-~n~~ 373 (491)
T PLN02852 300 -----RFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVV-PNVH 373 (491)
T ss_pred -----EEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCee-ECCC
Confidence 000 00 01 111111 00000 000001123 368999999999998 44321 22333566 6788
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecccccc----cchhhHHHHHHHHHhhhcc
Q 039923 340 NNPQDSYPKNWKGKNGVYSVGFARQGLL----GISMDAHKVADDIASQWNS 386 (395)
Q Consensus 340 g~~~~~~~~~~~~~~~iya~Gd~~~~~~----~a~~~g~~~a~~i~~~~~~ 386 (395)
|++.++ ....|+.|||||+|||..++. .++.+|..+|++|..++..
T Consensus 374 G~V~~d-~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 374 GRVLSS-ASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred ceEEeC-CCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 999987 556789999999999998877 9999999999999999754
No 73
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-26 Score=198.17 Aligned_cols=287 Identities=20% Similarity=0.263 Sum_probs=209.9
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
...|||+||||||+|.++|.+.+|+|++.-++-- .+||.... ......|...+. -....+.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvld----------T~~IENfIsv~~-------teGpkl~ 269 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLD----------TMGIENFISVPE-------TEGPKLA 269 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeecc----------ccchhheecccc-------ccchHHH
Confidence 3469999999999999999999999997665532 34442110 001111111121 2346788
Q ss_pred HHHHHHHHHcCCccccCceEEEEEEcCCC-CcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCC
Q 039923 88 TYMEAYANHFEIEPLLGQEVQWAKYDAAM-GHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYK 165 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~V~~v~~~~~~-~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~ 165 (395)
..++...+++.+.+...++..++++.... +..+|++.+ ..+.++.+|+||| .+++-..+||.++|....+.+|..|
T Consensus 270 ~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstG--ArWRn~nvPGE~e~rnKGVayCPHC 347 (520)
T COG3634 270 AALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATG--ARWRNMNVPGEDEYRNKGVAYCPHC 347 (520)
T ss_pred HHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecC--cchhcCCCCchHHHhhCCeeeCCCC
Confidence 88999999999988666677777774332 567888888 8899999999999 6777778999999988889999999
Q ss_pred CCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhh
Q 039923 166 NGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLV 245 (395)
Q Consensus 166 ~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (395)
+...+++|+|+|||||.||+|.|..|+..-..||+++-.+ .+ +. +..+
T Consensus 348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~-eL-----------kA-------------D~VL------- 395 (520)
T COG3634 348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP-EL-----------KA-------------DAVL------- 395 (520)
T ss_pred CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch-hh-----------hh-------------HHHH-------
Confidence 9999999999999999999999999998888899985444 11 00 0000
Q ss_pred ccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhc-CCeEEecC--ccEEecC-----eEEEe---CCc--EecCc
Q 039923 246 LGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKS-GEIKVVPG--IQKFTAK-----GAEFV---NRT--VKEFD 312 (395)
Q Consensus 246 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~~~~~-----~v~~~---~g~--~i~~D 312 (395)
.+++.+ .++++..+ -+++.++ ++... +|+ .++-+
T Consensus 396 ---------------------------------q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~Le 442 (520)
T COG3634 396 ---------------------------------QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELE 442 (520)
T ss_pred ---------------------------------HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEee
Confidence 111111 36666666 3455554 23333 333 46778
Q ss_pred EEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc----cchhhHHHHHHHHHhhh
Q 039923 313 SIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL----GISMDAHKVADDIASQW 384 (395)
Q Consensus 313 ~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~----~a~~~g~~~a~~i~~~~ 384 (395)
-|++-.|.-||+ .|++.. ++ ++++|.+++| ....|+.|||||+|||...+. .++..|..++-....+|
T Consensus 443 GvFVqIGL~PNT-~WLkg~-ve-l~~rGEIivD-~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyL 514 (520)
T COG3634 443 GVFVQIGLLPNT-EWLKGA-VE-LNRRGEIIVD-ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYL 514 (520)
T ss_pred eeEEEEecccCh-hHhhch-hh-cCcCccEEEe-cCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhhhhh
Confidence 899999999998 888887 77 8899999999 788899999999999987765 66666666665555444
No 74
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.95 E-value=2.3e-26 Score=224.00 Aligned_cols=293 Identities=20% Similarity=0.230 Sum_probs=180.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|+|||+||+|+++|..|++.|++|+++|+.+.+||.++.. .+.+ ....++.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~---------~~~~~~~~ 191 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------IPAY---------RLPREVLD 191 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCc---------cCCHHHHH
Confidence 45789999999999999999999999999999999998865431 1111 11134444
Q ss_pred HHHHHHHHcCCccccCceE-EEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCC---
Q 039923 89 YMEAYANHFEIEPLLGQEV-QWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTY--- 164 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V-~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~--- 164 (395)
...+.+.+.|+++.+++.+ ..+.... ....||.||+|+|.+ .+..+.+++... .+. .....+
T Consensus 192 ~~l~~~~~~Gv~~~~~~~~~~~~~~~~-----------~~~~~D~Vi~AtG~~-~~~~~~i~g~~~-~gv-~~~~~~l~~ 257 (564)
T PRK12771 192 AEIQRILDLGVEVRLGVRVGEDITLEQ-----------LEGEFDAVFVAIGAQ-LGKRLPIPGEDA-AGV-LDAVDFLRA 257 (564)
T ss_pred HHHHHHHHCCCEEEeCCEECCcCCHHH-----------HHhhCCEEEEeeCCC-CCCcCCCCCCcc-CCc-EEHHHHHHH
Confidence 4455667789888777655 2221111 112489999999953 233345666432 221 111111
Q ss_pred --CCCcCCCCCeEEEECCCcCHHHHHHHHhhCC-CeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHh
Q 039923 165 --KNGVEFRASKVLVVGCGNSGMEISFDLCKNG-AQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFC 241 (395)
Q Consensus 165 --~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (395)
.......+++++|+|+|.+|++.+..+.+.+ .+|+++.|.+...+|.... .+.
T Consensus 258 ~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~-----~~~------------------- 313 (564)
T PRK12771 258 VGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDE-----EIE------------------- 313 (564)
T ss_pred hhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHH-----HHH-------------------
Confidence 1112346899999999999999999888887 6799999887322221110 000
Q ss_pred hhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhc--CCeEEec-Ccc--EEecCe-EE--EeCCcEecCcE
Q 039923 242 SRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKS--GEIKVVP-GIQ--KFTAKG-AE--FVNRTVKEFDS 313 (395)
Q Consensus 242 ~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~-~v~--~~~~~~-v~--~~~g~~i~~D~ 313 (395)
...+.|++. ..+....+.... +.+.+.. .++ .++..+ .. ..+..++++|.
T Consensus 314 ------~a~~~GVki----------------~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~ 371 (564)
T PRK12771 314 ------EALREGVEI----------------NWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADL 371 (564)
T ss_pred ------HHHHcCCEE----------------EecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCE
Confidence 001222220 000000000000 0000000 000 000111 00 11124799999
Q ss_pred EEEcCCCCCCCCccccc-cccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHHhhhcccc
Q 039923 314 IILATGYRSNVSSWLKE-ASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIASQWNSET 388 (395)
Q Consensus 314 vi~atG~~~~~~~~~~~-~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~~~~~~~~ 388 (395)
||+++|+.|+. .++++ .++. +++|++.+|..+++|+.||||++||+..++. .|+.+|+.+|.+|.+.|.++.
T Consensus 372 Vi~A~G~~p~~-~~~~~~~gl~--~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~g~~ 447 (564)
T PRK12771 372 VVLAIGQDIDS-AGLESVPGVE--VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNIDAFLGGEP 447 (564)
T ss_pred EEECcCCCCch-hhhhhccCcc--cCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999986 56654 4554 4789999985578899999999999988665 899999999999999997653
No 75
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.94 E-value=6.9e-26 Score=196.12 Aligned_cols=303 Identities=18% Similarity=0.177 Sum_probs=191.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc--CCcCceeeecCCccccCCCC-CCC-CCC---CCCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL--KIYDHLQLHLPKQFCQLPYV-PFP-REY---PAYP 81 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~-~~~-~~~---~~~~ 81 (395)
..+||+|||+||+|..||.+.++.|++.+++|++..+||+.-. +......++. .++|+.-.- .+. .+. +...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~n-Sh~yh~~q~~~~~~rGi~vs~~~~ 116 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNN-SHLYHEAQHEDFASRGIDVSSVSL 116 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhh-hHHHHHHhhhHHHhcCccccceec
Confidence 4699999999999999999999999999999999999996433 2222222222 222211100 000 000 1112
Q ss_pred CHHHHHHHHHHH-----------HHHcCCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCCCC
Q 039923 82 SGQQFITYMEAY-----------ANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEVPVLPK 147 (395)
Q Consensus 82 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~p~ 147 (395)
+.+.+.+...+. +++.+++..-+ .-.-.+...+.+.-.+ ..+.++++|+||| +. +++
T Consensus 117 dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-----~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATG--Se--V~~ 187 (506)
T KOG1335|consen 117 DLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-----FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATG--SE--VTP 187 (506)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-----eEeecCCceEEEeccCCCceEEeeeeEEEEeC--Cc--cCC
Confidence 333444433333 33333332211 1111111444444443 7899999999999 42 345
Q ss_pred CCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHh
Q 039923 148 IPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLK 227 (395)
Q Consensus 148 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ 227 (395)
+||+.-- ...+.++.-.-...+-+++++|||+|..|+|+..-..+.|.+||+++--+ .+.+..+. .++..+.+
T Consensus 188 ~PGI~ID-ekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~-----Eisk~~qr 260 (506)
T KOG1335|consen 188 FPGITID-EKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDG-----EISKAFQR 260 (506)
T ss_pred CCCeEec-CceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCH-----HHHHHHHH
Confidence 5665421 22244444334445679999999999999999999999999999998777 55555433 33333333
Q ss_pred hCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEec--C-e--
Q 039923 228 WFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTA--K-G-- 300 (395)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~-~-- 300 (395)
.+ .+.|++ +..+ |...+. + .
T Consensus 261 ~L--------------------~kQgik---------------------------------F~l~tkv~~a~~~~dg~v~ 287 (506)
T KOG1335|consen 261 VL--------------------QKQGIK---------------------------------FKLGTKVTSATRNGDGPVE 287 (506)
T ss_pred HH--------------------HhcCce---------------------------------eEeccEEEEeeccCCCceE
Confidence 22 333332 1111 111111 1 1
Q ss_pred EEE-----eCCcEecCcEEEEcCCCCCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchh
Q 039923 301 AEF-----VNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISM 371 (395)
Q Consensus 301 v~~-----~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~ 371 (395)
+.+ ...++++||.+++++|.+|-+..+ +++.|+. .|.+|++.++ ..+++.+|+||++||+..+|+ -|..
T Consensus 288 i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~-~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAee 365 (506)
T KOG1335|consen 288 IEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIE-LDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAEE 365 (506)
T ss_pred EEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccc-cccccceecc-ccccccCCceEEecccCCcchhhhhhhh
Confidence 122 123479999999999999988777 7778999 7999999999 778899999999999999998 6677
Q ss_pred hHHHHHHHHHhh
Q 039923 372 DAHKVADDIASQ 383 (395)
Q Consensus 372 ~g~~~a~~i~~~ 383 (395)
||-.+.+.|...
T Consensus 366 egI~~VE~i~g~ 377 (506)
T KOG1335|consen 366 EGIAAVEGIAGG 377 (506)
T ss_pred hchhheeeeccc
Confidence 777777666543
No 76
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.3e-26 Score=194.99 Aligned_cols=322 Identities=16% Similarity=0.199 Sum_probs=198.1
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC-C-cccccccCCcCceeeecCCcccc-------------CCCCC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES-C-LASLWKLKIYDHLQLHLPKQFCQ-------------LPYVP 72 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~-~-~~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 72 (395)
...||++|||||.+|++||+..+..|.+|.++|--. . .|..|--.-----.-.+|+.++. .-.++
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 456999999999999999999999999999998642 1 22233221000000011222211 00111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcE----EEEEcc-----EEEEeCEEEEeeCCCCCC
Q 039923 73 FPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHW----RVKTHE-----YEFMCRWLIVATGENEVP 143 (395)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~----~v~~~~-----~~~~~d~lVlAtG~~~~~ 143 (395)
..+. .-...-..+.+..++..+..+.-.+..-+-+.+++.+.-+.| .+...+ +.++++.+||||| .+|
T Consensus 97 ~~e~-~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG--~RP 173 (503)
T KOG4716|consen 97 VDEQ-KIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATG--LRP 173 (503)
T ss_pred Cccc-cccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEec--CCC
Confidence 1110 111223566666666666554332222122233332211111 222221 6899999999999 899
Q ss_pred CCCCCCCCCCCcccEeecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHH
Q 039923 144 VLPKIPGISEFRGRLLHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISV 223 (395)
Q Consensus 144 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~ 223 (395)
+.|.|||..++. +.+.+... ..+.+.+.+|||+|++|+|+|.+|+..|.+||++.|+- ++.-.+. .++.
T Consensus 174 rYp~IpG~~Ey~---ITSDDlFs-l~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~LrGFDq-----dmae 242 (503)
T KOG4716|consen 174 RYPDIPGAKEYG---ITSDDLFS-LPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLRGFDQ-----DMAE 242 (503)
T ss_pred CCCCCCCceeee---eccccccc-ccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe--ecccccH-----HHHH
Confidence 999999987643 55544443 35567788999999999999999999999999999974 3333332 2333
Q ss_pred HHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecCccEEecCeEEE
Q 039923 224 WLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPGIQKFTAKGAEF 303 (395)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~ 303 (395)
.+.. .++..|++.... .-....+++.++.+.+.-. ...+
T Consensus 243 ~v~~--------------------~m~~~Gikf~~~--------------~vp~~Veq~~~g~l~v~~k-------~t~t 281 (503)
T KOG4716|consen 243 LVAE--------------------HMEERGIKFLRK--------------TVPERVEQIDDGKLRVFYK-------NTNT 281 (503)
T ss_pred HHHH--------------------HHHHhCCceeec--------------ccceeeeeccCCcEEEEee-------cccc
Confidence 3332 346777751100 0001123333333333211 0111
Q ss_pred eCCcEecCcEEEEcCCCCCCCCcc-ccccccccccC-CCCCCCCCCCCCCCCCCeEEEEecccccc----cchhhHHHHH
Q 039923 304 VNRTVKEFDSIILATGYRSNVSSW-LKEASLFNQKN-NNNPQDSYPKNWKGKNGVYSVGFARQGLL----GISMDAHKVA 377 (395)
Q Consensus 304 ~~g~~i~~D~vi~atG~~~~~~~~-~~~~~l~~~~~-~g~~~~~~~~~~~~~~~iya~Gd~~~~~~----~a~~~g~~~a 377 (395)
..+-+-++|.|+||.|.++....+ ++..|+. .|+ .|.+.++ ...++++|+|||+||+..+.. .|+..|+.+|
T Consensus 282 ~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk-~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa 359 (503)
T KOG4716|consen 282 GEEGEEEYDTVLWAIGRKALTDDLNLDNAGVK-TNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLA 359 (503)
T ss_pred cccccchhhhhhhhhccccchhhcCCCcccee-ecccCCccccC-hHHhcCCCceEEecceecCCcccchhhhhhchHHH
Confidence 122256999999999999998776 6666887 654 6777777 677899999999999986654 9999999999
Q ss_pred HHHHhhhcc
Q 039923 378 DDIASQWNS 386 (395)
Q Consensus 378 ~~i~~~~~~ 386 (395)
+++.+-..+
T Consensus 360 ~Rlf~gs~q 368 (503)
T KOG4716|consen 360 RRLFAGSTQ 368 (503)
T ss_pred HHHhcCcce
Confidence 999876543
No 77
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.94 E-value=9.9e-25 Score=223.79 Aligned_cols=275 Identities=16% Similarity=0.141 Sum_probs=181.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.+||+|||||||||+||..+++.|++|+|||+.+.+||.+.... . ..+. .+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~------------------~~~g-~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---E------------------TIDG-KPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---c------------------ccCC-ccHHHHHHH
Confidence 47999999999999999999999999999999998888654211 0 0011 223445444
Q ss_pred HHHHHHHc-CCccccCceEEEEEEcCCCCcEEEE-------------Ecc--EEEEeCEEEEeeCCCCCCCCCCCCCCCC
Q 039923 90 MEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVK-------------THE--YEFMCRWLIVATGENEVPVLPKIPGISE 153 (395)
Q Consensus 90 ~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~-------------~~~--~~~~~d~lVlAtG~~~~~~~p~~~g~~~ 153 (395)
+...+... +++++.+++|..+.... ....+. ..+ ..+.|+.|||||| +.++.|++||.+.
T Consensus 221 ~~~~l~~~~~v~v~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATG--a~~r~~pipG~~~ 296 (985)
T TIGR01372 221 TVAELTAMPEVTLLPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATG--AHERPLVFANNDR 296 (985)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEecCC--eEEEEEEeeeccccccCCccccceEEEEcCEEEEcCC--CCCcCCCCCCCCC
Confidence 54555545 48888888887764321 111110 011 3689999999999 6788888888654
Q ss_pred CcccEeecC---CCCCC-cCCCCCeEEEECCCcCHHHHHHHHhhCCC-eEEEEEecCceeeeccccCCChhHHHHHHHhh
Q 039923 154 FRGRLLHTS---TYKNG-VEFRASKVLVVGCGNSGMEISFDLCKNGA-QVSLVVRDKVHILPKKILGRSSFAISVWLLKW 228 (395)
Q Consensus 154 ~~~~~~~~~---~~~~~-~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~ 228 (395)
. + +.... .+... ....+++++|||+|.+|+++|..|.+.|. .|+++++++ .+.+ .
T Consensus 297 p-g-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~-~~~~-------------~---- 356 (985)
T TIGR01372 297 P-G-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA-DVSP-------------E---- 356 (985)
T ss_pred C-C-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc-chhH-------------H----
Confidence 2 2 12211 11111 12367999999999999999999999995 578887655 1100 0
Q ss_pred CChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC----eEE
Q 039923 229 FPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK----GAE 302 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~ 302 (395)
+.+.+++.+|.++.+ +.++.+. ++.
T Consensus 357 -------------------------------------------------l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~ 387 (985)
T TIGR01372 357 -------------------------------------------------ARAEARELGIEVLTGHVVAATEGGKRVSGVA 387 (985)
T ss_pred -------------------------------------------------HHHHHHHcCCEEEcCCeEEEEecCCcEEEEE
Confidence 112223334555544 4555433 244
Q ss_pred Ee----CCcEecCcEEEEcCCCCCCCCcccccccccc-ccCC--CCCCCCCCCCCCCCCCeEEEEecccccc--cchhhH
Q 039923 303 FV----NRTVKEFDSIILATGYRSNVSSWLKEASLFN-QKNN--NNPQDSYPKNWKGKNGVYSVGFARQGLL--GISMDA 373 (395)
Q Consensus 303 ~~----~g~~i~~D~vi~atG~~~~~~~~~~~~~l~~-~~~~--g~~~~~~~~~~~~~~~iya~Gd~~~~~~--~a~~~g 373 (395)
+. +++++++|.|++++|+.|+. .+...++... .++. ++.. .++.|+||++||+++... .|+.+|
T Consensus 388 l~~~~g~~~~i~~D~V~va~G~~Pnt-~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~~~~~~A~~eG 460 (985)
T TIGR01372 388 VARNGGAGQRLEADALAVSGGWTPVV-HLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGLFGLAAALADG 460 (985)
T ss_pred EEecCCceEEEECCEEEEcCCcCchh-HHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCccCHHHHHHHH
Confidence 43 45689999999999999998 5665554330 1221 1211 256899999999997665 899999
Q ss_pred HHHHHHHHhhhcc
Q 039923 374 HKVADDIASQWNS 386 (395)
Q Consensus 374 ~~~a~~i~~~~~~ 386 (395)
+.+|..|+..+..
T Consensus 461 ~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 461 AAAGAAAARAAGF 473 (985)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999877743
No 78
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.94 E-value=8.5e-26 Score=211.62 Aligned_cols=285 Identities=20% Similarity=0.222 Sum_probs=202.4
Q ss_pred CCeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKER---GVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~---g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
.+++|||.|++|..+.-++++. -+++++|..++++. |....+. .-++.-...+++.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls--------------~vl~~~~~~edi~ 62 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLS--------------SVLAGEKTAEDIS 62 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeec--------------cccCCCccHHHHh
Confidence 5799999999999999999994 35899999887543 4443331 0112223345555
Q ss_pred HHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCC
Q 039923 88 TYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKN 166 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~ 166 (395)
-.-..++++++++++.+.+|+.++... +. |+++. ..+.||.||+||| |.|++|++||.+.+.- .....+.+
T Consensus 63 l~~~dwy~~~~i~L~~~~~v~~idr~~--k~--V~t~~g~~~~YDkLilATG--S~pfi~PiPG~~~~~v--~~~R~i~D 134 (793)
T COG1251 63 LNRNDWYEENGITLYTGEKVIQIDRAN--KV--VTTDAGRTVSYDKLIIATG--SYPFILPIPGSDLPGV--FVYRTIDD 134 (793)
T ss_pred ccchhhHHHcCcEEEcCCeeEEeccCc--ce--EEccCCcEeecceeEEecC--ccccccCCCCCCCCCe--eEEecHHH
Confidence 555677888899999999999999887 44 66665 8999999999999 8999999999775432 22222211
Q ss_pred C-----cCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHh
Q 039923 167 G-----VEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFC 241 (395)
Q Consensus 167 ~-----~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (395)
. .....++.+|||||..|+|.|..|...|.++++++-.+ +++.+... .-...++..
T Consensus 135 ~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQLD-----~~ag~lL~~------------- 195 (793)
T COG1251 135 VEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQLD-----RTAGRLLRR------------- 195 (793)
T ss_pred HHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhhh-----hHHHHHHHH-------------
Confidence 1 12345668999999999999999999999999998777 44333222 111111111
Q ss_pred hhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecCccEE----ecCeEEEeCCcEecCcEEEEc
Q 039923 242 SRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPGIQKF----TAKGAEFVNRTVKEFDSIILA 317 (395)
Q Consensus 242 ~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~----~~~~v~~~~g~~i~~D~vi~a 317 (395)
.+++.|++ +.+..+.+++ ...++.+.||..+++|.|+++
T Consensus 196 ------~le~~Gi~-------------------------------~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a 238 (793)
T COG1251 196 ------KLEDLGIK-------------------------------VLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMA 238 (793)
T ss_pred ------HHHhhcce-------------------------------eecccchhhhhcCcceeeEeecCCCcccceeEEEe
Confidence 22444443 1111112222 224688999999999999999
Q ss_pred CCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc-------cchhhHHHHHHHHHhhhc
Q 039923 318 TGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL-------GISMDAHKVADDIASQWN 385 (395)
Q Consensus 318 tG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~-------~a~~~g~~~a~~i~~~~~ 385 (395)
+|++|+. .+..+.|+. .|+ |.++. .+++|+.|+|||+|.|+..-. -+..|++.+|+++.....
T Consensus 239 ~GIrPn~-ela~~aGla-vnr-GIvvn--d~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~ 308 (793)
T COG1251 239 VGIRPND-ELAKEAGLA-VNR-GIVVN--DYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA 308 (793)
T ss_pred ccccccc-HhHHhcCcC-cCC-Ceeec--ccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence 9999998 788888998 444 65554 499999999999999985543 778999999999877644
No 79
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.93 E-value=8.6e-25 Score=192.40 Aligned_cols=289 Identities=17% Similarity=0.147 Sum_probs=190.3
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
...++|||+|+|++|++++..|-..-++|++|.++.++--+|. +|...-+.+....++
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----------------------LpS~~vGTve~rSIv 110 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----------------------LPSTTVGTVELRSIV 110 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----------------------cCCccccceeehhhh
Confidence 3458999999999999999999998999999999875432111 011112334445567
Q ss_pred HHHHHHHHHcCCcc-ccCceEEEEEEcCCCCcEEEE--Ec-c----EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEe
Q 039923 88 TYMEAYANHFEIEP-LLGQEVQWAKYDAAMGHWRVK--TH-E----YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLL 159 (395)
Q Consensus 88 ~~~~~~~~~~~~~~-~~~~~V~~v~~~~~~~~~~v~--~~-~----~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~ 159 (395)
+..+..+++....+ .+..+...++.+. ..+++. +. + ..+.||+||+|+| ..+..+.+||..++....-
T Consensus 111 EPIr~i~r~k~~~~~y~eAec~~iDp~~--k~V~~~s~t~~~~~~e~~i~YDyLViA~G--A~~~TFgipGV~e~~~FLK 186 (491)
T KOG2495|consen 111 EPIRAIARKKNGEVKYLEAECTKIDPDN--KKVHCRSLTADSSDKEFVIGYDYLVIAVG--AEPNTFGIPGVEENAHFLK 186 (491)
T ss_pred hhHHHHhhccCCCceEEecccEeecccc--cEEEEeeeccCCCcceeeecccEEEEecc--CCCCCCCCCchhhchhhhh
Confidence 77777766654332 4456677777766 443332 22 2 6899999999999 6888899999876432111
Q ss_pred ec---CCC----------------CCCcCCCCCeEEEECCCcCHHHHHHHHhhC--------------CCeEEEEEecCc
Q 039923 160 HT---STY----------------KNGVEFRASKVLVVGCGNSGMEISFDLCKN--------------GAQVSLVVRDKV 206 (395)
Q Consensus 160 ~~---~~~----------------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------g~~V~~~~r~~~ 206 (395)
.. .++ .+++...--+++|||||++|+|+|.+|+.- -.+||+++..+
T Consensus 187 Ev~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d- 265 (491)
T KOG2495|consen 187 EVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD- 265 (491)
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch-
Confidence 11 111 111112334799999999999999999852 23688888777
Q ss_pred eeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCC
Q 039923 207 HILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGE 286 (395)
Q Consensus 207 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (395)
.+|++.+. ++..+. .+++.+..
T Consensus 266 ~iL~mFdk-----rl~~ya-----------------------------------------------------e~~f~~~~ 287 (491)
T KOG2495|consen 266 HILNMFDK-----RLVEYA-----------------------------------------------------ENQFVRDG 287 (491)
T ss_pred hHHHHHHH-----HHHHHH-----------------------------------------------------HHHhhhcc
Confidence 44443322 111111 12222334
Q ss_pred eEEecC--ccEEecCeEEEeCC----cEecCcEEEEcCCCCCCCCccccccccccccCCC--CCCCCCCCCC-CCCCCeE
Q 039923 287 IKVVPG--IQKFTAKGAEFVNR----TVKEFDSIILATGYRSNVSSWLKEASLFNQKNNN--NPQDSYPKNW-KGKNGVY 357 (395)
Q Consensus 287 v~~~~~--v~~~~~~~v~~~~g----~~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g--~~~~~~~~~~-~~~~~iy 357 (395)
|.+..+ |..+++..|..+.+ ++||+-+++|+||..|.. +...+... +++.| .+.+| ++++ .+.+|||
T Consensus 288 I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp--~~k~lm~~-i~e~~rr~L~vD-E~LrV~G~~nvf 363 (491)
T KOG2495|consen 288 IDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP--VIKDLMKQ-IDEQGRRGLAVD-EWLRVKGVKNVF 363 (491)
T ss_pred ceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch--hhhhHhhc-CCccCceeeeee-ceeeccCcCceE
Confidence 555555 77888888777655 689999999999999863 34444222 33444 56666 4554 7899999
Q ss_pred EEEecccccc------cchhhHHHHHHHHHhhhc
Q 039923 358 SVGFARQGLL------GISMDAHKVADDIASQWN 385 (395)
Q Consensus 358 a~Gd~~~~~~------~a~~~g~~~a~~i~~~~~ 385 (395)
|+|||+..+. .|..||..+|+++....+
T Consensus 364 AiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k 397 (491)
T KOG2495|consen 364 AIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMGK 397 (491)
T ss_pred EeccccccccCccHHHHHHHHHHHHHHHHHHHhc
Confidence 9999993322 899999999999876654
No 80
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.93 E-value=1.7e-25 Score=202.60 Aligned_cols=201 Identities=25% Similarity=0.393 Sum_probs=127.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCcccccccCC-cCceeeecC--CccccCCCCCCCCCC--------
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERG-VPSLIIEKESCLASLWKLKI-YDHLQLHLP--KQFCQLPYVPFPREY-------- 77 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g-~~v~lie~~~~~~g~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~-------- 77 (395)
++|+++||.||+++++|..|.+.+ .++.+||+.+.. .|+..+ .++.++..+ +.+.......-+..+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 479999999999999999999987 899999998754 355433 233332222 111111111101110
Q ss_pred ---------CCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCC--CcEEEEEc-----cEEEEeCEEEEeeCCCC
Q 039923 78 ---------PAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAM--GHWRVKTH-----EYEFMCRWLIVATGENE 141 (395)
Q Consensus 78 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~--~~~~v~~~-----~~~~~~d~lVlAtG~~~ 141 (395)
..++++.+|.+|+++.+++++..++++++|++|++.... ..|+|++. .+++.++.||+|+| .
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G--~ 157 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG--G 157 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE------
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC--C
Confidence 256899999999999999999769999999999998753 25999983 38999999999999 7
Q ss_pred CCCCCCCCCCCCCcccEeecCCCCCCc--CCCCCeEEEECCCcCHHHHHHHHhhCCC--eEEEEEecCceeeeccccC
Q 039923 142 VPVLPKIPGISEFRGRLLHTSTYKNGV--EFRASKVLVVGCGNSGMEISFDLCKNGA--QVSLVVRDKVHILPKKILG 215 (395)
Q Consensus 142 ~~~~p~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~G~~a~e~a~~l~~~g~--~V~~~~r~~~~~~p~~~~~ 215 (395)
.|.+|...........++|++++.... ...+++|+|||||.||+|++..|.+.+. +|+|+.|++ .+.|.++..
T Consensus 158 ~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~-~~~~~d~s~ 234 (341)
T PF13434_consen 158 QPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP-GFFPMDDSP 234 (341)
T ss_dssp EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS-S-EB----C
T ss_pred CCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC-ccCCCcccc
Confidence 888886432111125689998775543 4578999999999999999999998764 899999999 777876653
No 81
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.92 E-value=2.4e-24 Score=207.19 Aligned_cols=313 Identities=18% Similarity=0.203 Sum_probs=201.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++|.|||+||+|++||.+|-+.|+.|+++||.+.+||+..+. .|.+.....+++
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg------------------------ipnmkldk~vv~ 1839 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG------------------------IPNMKLDKFVVQ 1839 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec------------------------CCccchhHHHHH
Confidence 35899999999999999999999999999999999999976542 244444566788
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCccc-----EeecC-
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGR-----LLHTS- 162 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~-----~~~~~- 162 (395)
....+..+.|+++..|+++-+- +..+.-.-..|.+|+|+|. ..|+..++||-+. ++. ..|..
T Consensus 1840 rrv~ll~~egi~f~tn~eigk~----------vs~d~l~~~~daiv~a~gs-t~prdlpv~grd~-kgv~fame~l~~nt 1907 (2142)
T KOG0399|consen 1840 RRVDLLEQEGIRFVTNTEIGKH----------VSLDELKKENDAIVLATGS-TTPRDLPVPGRDL-KGVHFAMEFLEKNT 1907 (2142)
T ss_pred HHHHHHHhhCceEEeecccccc----------ccHHHHhhccCeEEEEeCC-CCCcCCCCCCccc-cccHHHHHHHHHhH
Confidence 8888888999999888877322 2222223458999999997 4777778888543 110 01110
Q ss_pred -CC------CCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCe-EEEEEecCceeeeccccCCChhHHHHHHHhhCChhHH
Q 039923 163 -TY------KNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ-VSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVV 234 (395)
Q Consensus 163 -~~------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 234 (395)
.. ......++|.|+|||||.+|.++...-.++|++ |.-+ .++|.+...+. ..+.+.. .|...+
T Consensus 1908 k~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~-----ellp~pp~~ra---~~npwpq-wprvfr 1978 (2142)
T KOG0399|consen 1908 KSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNF-----ELLPQPPPERA---PDNPWPQ-WPRVFR 1978 (2142)
T ss_pred HhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecce-----eecCCCCcccC---CCCCCcc-CceEEE
Confidence 00 111234789999999999999999888888775 5544 34443222100 0000000 000000
Q ss_pred -HHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEE--ecCeEEE---eC-
Q 039923 235 -DRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKF--TAKGAEF---VN- 305 (395)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~--~~~~v~~---~~- 305 (395)
+.-..+...++-.+++.+.+- ...+ .--.+++|+=... |+.- +...+++ .+
T Consensus 1979 vdygh~e~~~~~g~dpr~y~vl-------------------tk~f-~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~s 2038 (2142)
T KOG0399|consen 1979 VDYGHAEAKEHYGSDPRTYSVL-------------------TKRF-IGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNS 2038 (2142)
T ss_pred eecchHHHHHHhCCCcceeeee-------------------eeee-eccCCCceeeEEEEEEEEEecCCCceEEEEcCCc
Confidence 011112222333334443332 0000 0011122221111 1111 1112333 22
Q ss_pred CcEecCcEEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHHHHHHHh
Q 039923 306 RTVKEFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKVADDIAS 382 (395)
Q Consensus 306 g~~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~a~~i~~ 382 (395)
.+.+++|+||++.||-...+...+++++. .|+++.+.+.+....+.++++||+|||..+.. ||+..|+++|+.+..
T Consensus 2039 ee~~eadlv~lamgf~gpe~~~~~~~~~~-~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2039 EEIIEADLVILAMGFVGPEKSVIEQLNLK-TDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred ceeeecceeeeeccccCcchhhhhhcCcc-cCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHHHH
Confidence 34689999999999998887888999999 89999998886778889999999999999877 999999999999987
Q ss_pred hhccc
Q 039923 383 QWNSE 387 (395)
Q Consensus 383 ~~~~~ 387 (395)
.+.++
T Consensus 2118 ~~~~~ 2122 (2142)
T KOG0399|consen 2118 LMGGT 2122 (2142)
T ss_pred HhCCc
Confidence 55443
No 82
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=3.4e-23 Score=182.07 Aligned_cols=329 Identities=21% Similarity=0.257 Sum_probs=202.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCcccccccCC-cCceeee-----------cCCccccCCCC----
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERG-VPSLIIEKESCLASLWKLKI-YDHLQLH-----------LPKQFCQLPYV---- 71 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g-~~v~lie~~~~~~g~~~~~~-~~~~~~~-----------~~~~~~~~~~~---- 71 (395)
..+|++.||-||+-+++|..|.+.+ .++..+||.+... |+..+ .++..+. .|...+.|-.+
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 3589999999999999999999986 7899999997542 43322 1111111 11111111000
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCc---EEEEEccEEEEeCEEEEeeCCCCCCC
Q 039923 72 ----PFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGH---WRVKTHEYEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 72 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~---~~v~~~~~~~~~d~lVlAtG~~~~~~ 144 (395)
.+-..-..++++.++.+|+++.+.++ -.++++++|+.|...+.+.. +.++.++..++|+.||+++| .+|.
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G--~~P~ 158 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVG--TQPY 158 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccC--CCcC
Confidence 00011135789999999999999998 67899999996643333233 33333447999999999999 7899
Q ss_pred CCC-CCCCCCCcccEeecCCCCCCc-CC-CCCeEEEECCCcCHHHHHHHHhhC----CCeEEEEEecCceeeeccccCCC
Q 039923 145 LPK-IPGISEFRGRLLHTSTYKNGV-EF-RASKVLVVGCGNSGMEISFDLCKN----GAQVSLVVRDKVHILPKKILGRS 217 (395)
Q Consensus 145 ~p~-~~g~~~~~~~~~~~~~~~~~~-~~-~~~~v~VvG~G~~a~e~a~~l~~~----g~~V~~~~r~~~~~~p~~~~~~~ 217 (395)
+|+ +..+.. ..++|+.++.... +. ..++|.|||||.||.|+...|... ..++.|+.|+. .++|.+.....
T Consensus 159 IP~~f~~l~~--~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~-gf~p~d~Skf~ 235 (436)
T COG3486 159 IPPCFRSLIG--ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS-GFLPMDYSKFG 235 (436)
T ss_pred CChHHhCcCc--cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC-CCCccccchhh
Confidence 885 333332 4689998886432 22 344599999999999999988754 34689999999 88898776433
Q ss_pred hhHHHHHHHhh---CChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhc--CCeEEecC
Q 039923 218 SFAISVWLLKW---FPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKS--GEIKVVPG 292 (395)
Q Consensus 218 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~ 292 (395)
..-+++...++ +|...+++++.... +--+||..... ..+.+.-+.+.+.. .++.+...
T Consensus 236 ~e~F~P~y~dyfy~l~~~~r~~ll~~~~------~~YkgI~~~ti-----------~~Iy~~lY~~~l~~~~~~v~l~~~ 298 (436)
T COG3486 236 LEYFSPEYTDYFYGLPPEARDELLRKQR------LLYKGISFDTI-----------EEIYDLLYEQSLGGRKPDVRLLSL 298 (436)
T ss_pred hhhcCchhHHHHhcCCHHHHHHHHhhcC------ccccccCHHHH-----------HHHHHHHHHHHhcCCCCCeeeccc
Confidence 33333333333 34444444443322 11122210000 00111111222211 23444433
Q ss_pred --ccEEecCe---EEE-------eCCcEecCcEEEEcCCCCCCCCcccccc--ccccccCCCCCCCCCCCCC----CCCC
Q 039923 293 --IQKFTAKG---AEF-------VNRTVKEFDSIILATGYRSNVSSWLKEA--SLFNQKNNNNPQDSYPKNW----KGKN 354 (395)
Q Consensus 293 --v~~~~~~~---v~~-------~~g~~i~~D~vi~atG~~~~~~~~~~~~--~l~~~~~~g~~~~~~~~~~----~~~~ 354 (395)
|..+...+ +.+ ...+++++|.||+|||++...+.|++.+ .|. .|++|...++.++-. ....
T Consensus 299 ~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~-~d~~g~l~I~~dY~v~~~~~~~~ 377 (436)
T COG3486 299 SEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQ-WDDDGRLVIGRDYRVLWDGPGKG 377 (436)
T ss_pred cceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhc-ccccCCeEecCceeeecCCCCcc
Confidence 55554433 333 2335789999999999998887787777 345 678887777633322 2234
Q ss_pred CeEEEEecc
Q 039923 355 GVYSVGFAR 363 (395)
Q Consensus 355 ~iya~Gd~~ 363 (395)
.||+.|-..
T Consensus 378 ~ifvqn~e~ 386 (436)
T COG3486 378 RIFVQNAEL 386 (436)
T ss_pred eEEEecccc
Confidence 799999754
No 83
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.86 E-value=4.2e-21 Score=178.56 Aligned_cols=295 Identities=19% Similarity=0.226 Sum_probs=187.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+||||||+|+++|..|++.|+.|+++|+.+..||...+. ++.+....++.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG------------------------IP~~kl~k~i~d~ 178 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG------------------------IPDFKLPKDILDR 178 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec------------------------CchhhccchHHHH
Confidence 3899999999999999999999999999999999999876542 2444445678888
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCC-----
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTY----- 164 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~----- 164 (395)
..+++++.|++++.++++-. .++.+.-.-.||.+++|+|. ..|+...+||.+.. + +....++
T Consensus 179 ~i~~l~~~Gv~~~~~~~vG~----------~it~~~L~~e~Dav~l~~G~-~~~~~l~i~g~d~~-g-v~~A~dfL~~~~ 245 (457)
T COG0493 179 RLELLERSGVEFKLNVRVGR----------DITLEELLKEYDAVFLATGA-GKPRPLDIPGEDAK-G-VAFALDFLTRLN 245 (457)
T ss_pred HHHHHHHcCeEEEEcceECC----------cCCHHHHHHhhCEEEEeccc-cCCCCCCCCCcCCC-c-chHHHHHHHHHH
Confidence 88889998999988887731 13333322345999999997 56776778876521 1 1111110
Q ss_pred ---------CCCcCCCCCeEEEECCCcCHHHHHHHHhhCCC-eEEEEEecCce--eeeccccCCChhHHHHHHHhhCChh
Q 039923 165 ---------KNGVEFRASKVLVVGCGNSGMEISFDLCKNGA-QVSLVVRDKVH--ILPKKILGRSSFAISVWLLKWFPVD 232 (395)
Q Consensus 165 ---------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
.......+++|+|||+|.+++|++......|+ +|+.+.+.... ..|.+.. +
T Consensus 246 ~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~---------------~-- 308 (457)
T COG0493 246 KEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTW---------------A-- 308 (457)
T ss_pred HHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCccccc---------------c--
Confidence 11122245999999999999999999988888 58887643311 0000000 0
Q ss_pred HHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhh--hcCCeEEecC--ccE---Eec----CeE
Q 039923 233 VVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKI--KSGEIKVVPG--IQK---FTA----KGA 301 (395)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~--v~~---~~~----~~v 301 (395)
....+......|+.. .+...-.+.+ ++|+|.-... +.. .++ ..+
T Consensus 309 ---------~~~~~~~a~eeg~~~----------------~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~ 363 (457)
T COG0493 309 ---------AQLEVRSAGEEGVER----------------LPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPV 363 (457)
T ss_pred ---------hhhhhhhhhhcCCcc----------------cccCCceeEeecCCCcEeeeecccccccCcccccccccCc
Confidence 000011112222220 0000001111 1233331111 100 011 012
Q ss_pred EEe-CCcEecCcEEEEcCCCCCCCCcccc-ccccccccCCCCCCCCCCCCCCCCCCeEEEEecccccc---cchhhHHHH
Q 039923 302 EFV-NRTVKEFDSIILATGYRSNVSSWLK-EASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQGLL---GISMDAHKV 376 (395)
Q Consensus 302 ~~~-~g~~i~~D~vi~atG~~~~~~~~~~-~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~g~~~ 376 (395)
... +...+++|.|+.++|+.++...... ..++. .+..|.+.++....+|+.+++|+.||+..+.. +|+.+|+.+
T Consensus 364 ~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~-~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~a 442 (457)
T COG0493 364 GVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLK-LDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREA 442 (457)
T ss_pred cccCceEEehHHHHHHHhccCCCcccccccccccc-cCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHH
Confidence 221 2236899999999999998755332 33566 77899999983333899999999999998755 999999999
Q ss_pred HHHHHhhh
Q 039923 377 ADDIASQW 384 (395)
Q Consensus 377 a~~i~~~~ 384 (395)
|+.|..++
T Consensus 443 ak~i~~~~ 450 (457)
T COG0493 443 AKAIDKEL 450 (457)
T ss_pred HHhhhHHH
Confidence 99999443
No 84
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.86 E-value=2.3e-20 Score=162.03 Aligned_cols=324 Identities=21% Similarity=0.209 Sum_probs=179.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKER--GVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQF 86 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~--g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..++|+|||+||||+++|.+|+++ +++|+|+|+.+.+.|+.++..- |.++.-..+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA-----------------------PDHpEvKnv 75 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA-----------------------PDHPEVKNV 75 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC-----------------------CCCcchhhH
Confidence 346999999999999999999995 5799999999998888776533 333444556
Q ss_pred HHHHHHHHHHcCCccccCceE-EEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCc-----ccEee
Q 039923 87 ITYMEAYANHFEIEPLLGQEV-QWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFR-----GRLLH 160 (395)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~V-~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~-----~~~~~ 160 (395)
...+...+++....+..|..| +. +++.+-+-.||.||+|.|+ ..++...|||.+... ..+-+
T Consensus 76 intFt~~aE~~rfsf~gNv~vG~d-----------vsl~eL~~~ydavvLaYGa-~~dR~L~IPGe~l~~V~Sarefv~W 143 (468)
T KOG1800|consen 76 INTFTKTAEHERFSFFGNVKVGRD-----------VSLKELTDNYDAVVLAYGA-DGDRRLDIPGEELSGVISAREFVGW 143 (468)
T ss_pred HHHHHHHhhccceEEEecceeccc-----------ccHHHHhhcccEEEEEecC-CCCcccCCCCcccccceehhhhhhh
Confidence 666677777766666666555 22 2333323469999999998 456777899875210 01111
Q ss_pred cCCCC----CCcCCCCCeEEEECCCcCHHHHHHHHhhC----------------------CCeEEEEEecCceeee----
Q 039923 161 TSTYK----NGVEFRASKVLVVGCGNSGMEISFDLCKN----------------------GAQVSLVVRDKVHILP---- 210 (395)
Q Consensus 161 ~~~~~----~~~~~~~~~v~VvG~G~~a~e~a~~l~~~----------------------g~~V~~~~r~~~~~~p---- 210 (395)
+.... ...++....|+|||.|.+|+++|..|... -++|+++.|+.. +--
T Consensus 144 yng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp-~~~aFTi 222 (468)
T KOG1800|consen 144 YNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGP-LQVAFTI 222 (468)
T ss_pred ccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCc-cceeeeH
Confidence 11111 12344588999999999999999988742 136889988871 100
Q ss_pred ---ccccCCC-------hhHHHHHHHhhCChhH--HHHHHHHhhhhhccchhhcC--CCCCCCCCCcccCCCCCCcccCh
Q 039923 211 ---KKILGRS-------SFAISVWLLKWFPVDV--VDRFLLFCSRLVLGDTKQIG--IQRPKMGPLQWKNSVGKTPVLDD 276 (395)
Q Consensus 211 ---~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g--i~~~~~~~~~~~~~~~~~~~~~~ 276 (395)
++....+ .+.++. .++.... .++....+...+.+....+. ..+.......++...-+.
T Consensus 223 KELRE~~~l~~~~~r~~~~~~~~---~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~----- 294 (468)
T KOG1800|consen 223 KELREVLELPGARPRLDPVDFSG---KWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRT----- 294 (468)
T ss_pred HHHHHHhCCCCcccccCchhccc---eeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcC-----
Confidence 0000000 000000 0000000 00111111111111111111 011111111111111111
Q ss_pred hhHhhhhcC-----CeEEecCccEEecCeEEEeCCcEecCcEEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCC-
Q 039923 277 GAFAKIKSG-----EIKVVPGIQKFTAKGAEFVNRTVKEFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNW- 350 (395)
Q Consensus 277 ~~~~~~~~~-----~v~~~~~v~~~~~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~- 350 (395)
..++..+ ++.+..++.+-.. .+.+.+-+.++|++++.+.||+...- .. ++. +|.+-.++-+ .+.+
T Consensus 295 --P~~i~~~~~~v~~~~~~~t~l~~~~-~~~tg~~e~~p~~l~i~sIGYks~pv---~~-gip-Fd~~kgvv~n-~~GrV 365 (468)
T KOG1800|consen 295 --PGAILPGADGVSGVRFQVTILEGTQ-AVPTGAFETLPCGLLIRSIGYKSVPV---DS-GIP-FDDKKGVVPN-VNGRV 365 (468)
T ss_pred --HHHhccCcccccceEEEeeeehhhc-ccccCceEeeccceeEeeeeeccccc---CC-CCC-cccccCcccC-CCceE
Confidence 1222222 4444443211000 22233445799999999999998642 11 444 4433222222 1111
Q ss_pred ---CCCCCeEEEEecccccc----cchhhHHHHHHHHHhhhc
Q 039923 351 ---KGKNGVYSVGFARQGLL----GISMDAHKVADDIASQWN 385 (395)
Q Consensus 351 ---~~~~~iya~Gd~~~~~~----~a~~~g~~~a~~i~~~~~ 385 (395)
.-.|+||+.|++..+|. .++++|..+|+.|...+.
T Consensus 366 ~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~qD~~ 407 (468)
T KOG1800|consen 366 LVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIVQDLK 407 (468)
T ss_pred EeeccCCceEEEeeeccCCcceeeehhhhHHHHHHHHHHHHH
Confidence 13589999999999877 889999999999998886
No 85
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.85 E-value=7.1e-19 Score=162.53 Aligned_cols=163 Identities=20% Similarity=0.168 Sum_probs=103.2
Q ss_pred CCCCeEEECCChHHHHHHHHHH-HcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLK-ERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFI 87 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~-~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (395)
..++|+||||||||+++|.+|+ +.|++|+|||+.+.+||+++.... +..+.-..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa-----------------------Pdh~~~k~v~ 94 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA-----------------------PDHIHVKNTY 94 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC-----------------------CCCccHHHHH
Confidence 3578999999999999999876 469999999999999998875422 1223335566
Q ss_pred HHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCC------------C------CC
Q 039923 88 TYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLP------------K------IP 149 (395)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p------------~------~~ 149 (395)
..+...+...++++..+.+|. . .++.++-.-.||.||+|+|+. ....| . ++
T Consensus 95 ~~f~~~~~~~~v~f~gnv~VG-----~-----Dvt~eeL~~~YDAVIlAtGA~-~l~ipi~~~~~~~~~~GGe~~~~~l~ 163 (506)
T PTZ00188 95 KTFDPVFLSPNYRFFGNVHVG-----V-----DLKMEELRNHYNCVIFCCGAS-EVSIPIGQQDEDKAVSGGETNPRKQN 163 (506)
T ss_pred HHHHHHHhhCCeEEEeeeEec-----C-----ccCHHHHHhcCCEEEEEcCCC-CCCCCcccccceeeeccccccccccC
Confidence 666665555566655443331 1 133444123799999999964 22222 0 11
Q ss_pred CCCCCcccEeecCCCCCC----cCC-------CCCeEEEECCCcCHHHHHHHHhh--------------------CC-Ce
Q 039923 150 GISEFRGRLLHTSTYKNG----VEF-------RASKVLVVGCGNSGMEISFDLCK--------------------NG-AQ 197 (395)
Q Consensus 150 g~~~~~~~~~~~~~~~~~----~~~-------~~~~v~VvG~G~~a~e~a~~l~~--------------------~g-~~ 197 (395)
|.-.....+.+.....+. ..+ ..++++|||+|++|+|+|..|.. .+ .+
T Consensus 164 Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~ 243 (506)
T PTZ00188 164 GIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKH 243 (506)
T ss_pred cEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcE
Confidence 221112223333322211 111 45789999999999999997542 22 36
Q ss_pred EEEEEecC
Q 039923 198 VSLVVRDK 205 (395)
Q Consensus 198 V~~~~r~~ 205 (395)
|+++-|+.
T Consensus 244 V~ivgRRG 251 (506)
T PTZ00188 244 IYIVGRRG 251 (506)
T ss_pred EEEEEecC
Confidence 99999998
No 86
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.82 E-value=3.3e-19 Score=168.84 Aligned_cols=278 Identities=19% Similarity=0.174 Sum_probs=176.4
Q ss_pred eEEECCChHHHHHHHHHHHcC--CCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 039923 13 PVIVGAGPSGLAAAACLKERG--VPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITYM 90 (395)
Q Consensus 13 vvIIG~G~aG~~~A~~l~~~g--~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (395)
++|||+|++|+.+|..|.+.. .+++++.++...... ...+ +..+. ......+.+....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~-----~~~~----~~~~~-----------~~~~~~~~~~~~~ 60 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYY-----RCPL----SLYVG-----------GGIASLEDLRYPP 60 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCC-----CCcc----chHHh-----------cccCCHHHhcccc
Confidence 689999999999999988864 588888877643210 0000 00000 0001111111111
Q ss_pred HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeecCCCCCCc--
Q 039923 91 EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHTSTYKNGV-- 168 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~-- 168 (395)
. ...+.++.+..+++|..++... .. +.+.+..+.||+||+||| +.+..++ +.. ...........+..
T Consensus 61 ~-~~~~~~i~~~~~~~v~~id~~~--~~--v~~~~g~~~yd~LvlatG--a~~~~~~--~~~--~~~~~~~~~~~~~~~~ 129 (415)
T COG0446 61 R-FNRATGIDVRTGTEVTSIDPEN--KV--VLLDDGEIEYDYLVLATG--ARPRPPP--ISD--WEGVVTLRLREDAEAL 129 (415)
T ss_pred h-hHHhhCCEEeeCCEEEEecCCC--CE--EEECCCcccccEEEEcCC--CcccCCC--ccc--cCceEEECCHHHHHHH
Confidence 1 2245578888899999999876 44 555555899999999999 5666654 111 11112222111111
Q ss_pred ---CCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhh
Q 039923 169 ---EFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLV 245 (395)
Q Consensus 169 ---~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (395)
....++++|+|+|..|+++|..+.+.|++|++++..+ ++++.... ..+...
T Consensus 130 ~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~----~~~~~~--------------------- 183 (415)
T COG0446 130 KGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLD----PEVAEE--------------------- 183 (415)
T ss_pred HHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhh----HHHHHH---------------------
Confidence 1125899999999999999999999999999999988 55554220 011111
Q ss_pred ccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecCe-------EEEeCCcEecCcEEEE
Q 039923 246 LGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAKG-------AEFVNRTVKEFDSIIL 316 (395)
Q Consensus 246 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~-------v~~~~g~~i~~D~vi~ 316 (395)
+.+.++..+++++.+ +.+++... +...++..+++|.+++
T Consensus 184 --------------------------------~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~ 231 (415)
T COG0446 184 --------------------------------LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVII 231 (415)
T ss_pred --------------------------------HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEE
Confidence 122222333444333 55555432 5777888999999999
Q ss_pred cCCCCCCCCccccccc-cccccCCCCCCCCCCCCCCC-CCCeEEEEecccccc-------------cchhhHHHHHHHHH
Q 039923 317 ATGYRSNVSSWLKEAS-LFNQKNNNNPQDSYPKNWKG-KNGVYSVGFARQGLL-------------GISMDAHKVADDIA 381 (395)
Q Consensus 317 atG~~~~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~-~~~iya~Gd~~~~~~-------------~a~~~g~~~a~~i~ 381 (395)
++|.+|+. .+..+.+ .. ...+|++.+| ..++++ .+++|++|||+.... .+..+++.++.++.
T Consensus 232 ~~g~~p~~-~l~~~~~~~~-~~~~g~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~ 308 (415)
T COG0446 232 GPGERPNV-VLANDALPGL-ALAGGAVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIA 308 (415)
T ss_pred eecccccH-HHHhhCccce-eccCCCEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhc
Confidence 99999985 5555543 12 4478889998 677776 999999999864432 56677777777776
Q ss_pred h
Q 039923 382 S 382 (395)
Q Consensus 382 ~ 382 (395)
.
T Consensus 309 ~ 309 (415)
T COG0446 309 G 309 (415)
T ss_pred c
Confidence 4
No 87
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=2.8e-16 Score=142.72 Aligned_cols=193 Identities=21% Similarity=0.285 Sum_probs=126.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC---CCEEEEecCCCccc-ccccCCcCceeeecCCcccc--CCCCC-----------
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERG---VPSLIIEKESCLAS-LWKLKIYDHLQLHLPKQFCQ--LPYVP----------- 72 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g---~~v~lie~~~~~~g-~~~~~~~~~~~~~~~~~~~~--~~~~~----------- 72 (395)
+++|+|||||++|+.+|.+|++.- ..+.|||+...+|. +.++..-+..+++.+..-+. .|+.+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 478999999999999999999973 24999999998875 55554444445444432221 12200
Q ss_pred --------CCCCCCCCCCHHHHHHHHHHHHHHc----CC-cc-ccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEee
Q 039923 73 --------FPREYPAYPSGQQFITYMEAYANHF----EI-EP-LLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVAT 137 (395)
Q Consensus 73 --------~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~-~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAt 137 (395)
...+-+.|+++..|-+|+.++...+ .- .+ ..+++.+++...++.+.+.++..+ +...||-+|+||
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 1123356888888888888766543 21 12 345667777777555777777776 888999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccEeecC----CCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCC--eEEEEEecC
Q 039923 138 GENEVPVLPKIPGISEFRGRLLHTS----TYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGA--QVSLVVRDK 205 (395)
Q Consensus 138 G~~~~~~~p~~~g~~~~~~~~~~~~----~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~--~V~~~~r~~ 205 (395)
|....+..+....+....+ +... ...+... ...+|+|+|+|.+.+|....|..+|+ +||++.|+.
T Consensus 161 gh~~~~~~~~~~~~~~~~~--~ia~~~~~~~ld~v~-~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 161 GHSAPPADPAARDLKGSPR--LIADPYPANALDGVD-ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred cCCCCCcchhhhccCCCcc--eeccccCCccccccc-CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 9632222221111111111 2222 2222222 45569999999999999999999877 499999997
No 88
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-18 Score=153.22 Aligned_cols=302 Identities=16% Similarity=0.180 Sum_probs=184.0
Q ss_pred CCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCC------CCCC------
Q 039923 11 PGPVIVGAGPSGLAAAACLKER--GVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVP------FPRE------ 76 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~--g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~------ 76 (395)
..-+|||+|.+..+++..+..+ +.+|.+|.-++.++ .++...++.++..++.+ +..|
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelP---------YmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRs 249 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---------YMRPPLSKELWWYGDPNSAKKLRFKQWSGKERS 249 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccCc---------ccCCCcchhceecCCCChhhheeecccCCccce
Confidence 4679999999999998888776 46888888776543 11111122111111110 1111
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCC-C
Q 039923 77 -----YPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKI-P 149 (395)
Q Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~-~ 149 (395)
...|++.+++-+. ..-|+.+..+-.|..++..+ .. |++++ .+|.||.|+|||| .+|+-.++ .
T Consensus 250 iffepd~FfvspeDLp~~-----~nGGvAvl~G~kvvkid~~d--~~--V~LnDG~~I~YdkcLIATG--~~Pk~l~~~~ 318 (659)
T KOG1346|consen 250 IFFEPDGFFVSPEDLPKA-----VNGGVAVLRGRKVVKIDEED--KK--VILNDGTTIGYDKCLIATG--VRPKKLQVFE 318 (659)
T ss_pred eEecCCcceeChhHCccc-----ccCceEEEeccceEEeeccc--Ce--EEecCCcEeehhheeeecC--cCcccchhhh
Confidence 1234444444332 22267777888888998776 44 77777 8999999999999 56664432 1
Q ss_pred CC-CCCccc--EeecCCCCCC---cCCCCCeEEEECCCcCHHHHHHHHhhC----CCeEEEEEecCceeeeccccCCChh
Q 039923 150 GI-SEFRGR--LLHTSTYKNG---VEFRASKVLVVGCGNSGMEISFDLCKN----GAQVSLVVRDKVHILPKKILGRSSF 219 (395)
Q Consensus 150 g~-~~~~~~--~~~~~~~~~~---~~~~~~~v~VvG~G~~a~e~a~~l~~~----g~~V~~~~r~~~~~~p~~~~~~~~~ 219 (395)
.. ++.... +++...-.+. .....++|.|||+|..|.|+|..|.+. |.+|+-+.... .
T Consensus 319 ~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek-------~------ 385 (659)
T KOG1346|consen 319 EASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK-------Y------ 385 (659)
T ss_pred hcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc-------C------
Confidence 11 111111 2222211111 122458999999999999999999764 55676543332 1
Q ss_pred HHHHHHHhhCChhHHHHHHHHhhhhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEe
Q 039923 220 AISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFT 297 (395)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~ 297 (395)
.+...+..++..| ..++++.++|.+..+ |+.+.
T Consensus 386 nm~kiLPeyls~w---------------------------------------------t~ekir~~GV~V~pna~v~sv~ 420 (659)
T KOG1346|consen 386 NMEKILPEYLSQW---------------------------------------------TIEKIRKGGVDVRPNAKVESVR 420 (659)
T ss_pred ChhhhhHHHHHHH---------------------------------------------HHHHHHhcCceeccchhhhhhh
Confidence 2222222222211 134445556666655 43332
Q ss_pred ----cCeEEEeCCcEecCcEEEEcCCCCCCCCccccccccccccC-CCCCCCCCCCCCCCCCCeEEEEecccccc-----
Q 039923 298 ----AKGAEFVNRTVKEFDSIILATGYRSNVSSWLKEASLFNQKN-NNNPQDSYPKNWKGKNGVYSVGFARQGLL----- 367 (395)
Q Consensus 298 ----~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~~~~~~iya~Gd~~~~~~----- 367 (395)
.--+.+.||.++..|+|++|+|-.||. .+.+..||+ +|+ -|-+++|. .++ ...|||++||++-...
T Consensus 421 ~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~-ela~~sgLe-iD~~lGGfrvna-eL~-ar~NvwvAGdaacF~D~~LGr 496 (659)
T KOG1346|consen 421 KCCKNLVLKLSDGSELRTDLVVVAVGEEPNS-ELAEASGLE-IDEKLGGFRVNA-ELK-ARENVWVAGDAACFEDGVLGR 496 (659)
T ss_pred hhccceEEEecCCCeeeeeeEEEEecCCCch-hhcccccce-eecccCcEEeeh-eee-cccceeeecchhhhhcccccc
Confidence 224788999999999999999999998 777788888 776 35566662 222 4679999999873221
Q ss_pred -------cchhhHHHHHHHHHhhhc--ccccccccc
Q 039923 368 -------GISMDAHKVADDIASQWN--SETRHLWLD 394 (395)
Q Consensus 368 -------~a~~~g~~~a~~i~~~~~--~~~~~~~~~ 394 (395)
.|+-.|+.+.+|+.+.-+ ..+-++|-|
T Consensus 497 RRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsd 532 (659)
T KOG1346|consen 497 RRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSD 532 (659)
T ss_pred eeccccccceeeceecccccccccCCccccceeeec
Confidence 788889999998877643 223355543
No 89
>PRK09897 hypothetical protein; Provisional
Probab=99.77 E-value=4.3e-16 Score=148.41 Aligned_cols=186 Identities=13% Similarity=0.155 Sum_probs=115.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCcc-cc-cccCCc-CceeeecC--------CccccCCCCC----
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERG--VPSLIIEKESCLA-SL-WKLKIY-DHLQLHLP--------KQFCQLPYVP---- 72 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g--~~v~lie~~~~~~-g~-~~~~~~-~~~~~~~~--------~~~~~~~~~~---- 72 (395)
|++|+|||||++|+++|.+|.+.+ .+|+|||+...+| |. |..... +.+.++.. ..+..+....
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 478999999999999999999875 5899999988777 43 443111 11111111 1111110000
Q ss_pred -----C---CCCCCCCCCHHHHHHHHHHHHH-------HcC--CccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEE
Q 039923 73 -----F---PREYPAYPSGQQFITYMEAYAN-------HFE--IEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWL 133 (395)
Q Consensus 73 -----~---~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~l 133 (395)
. ..+...++++..+-+|+++.+. ..| +.++.+++|+.++..+ +.|.+++++ ..+.+|.|
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg~~i~aD~V 158 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDLPSETFDLA 158 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCCeEEEcCEE
Confidence 0 0011346666666655554333 233 4566788999998876 678888754 68999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCcccEeecCCCCC--CcCCCCCeEEEECCCcCHHHHHHHHhhCC----------------
Q 039923 134 IVATGENEVPVLPKIPGISEFRGRLLHTSTYKN--GVEFRASKVLVVGCGNSGMEISFDLCKNG---------------- 195 (395)
Q Consensus 134 VlAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~g---------------- 195 (395)
|+|||.. .|..+ ++...| ....|.. .....+.+|+|+|.|.+++|++..|...|
T Consensus 159 VLAtGh~-~p~~~--~~~~~y-----i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~ 230 (534)
T PRK09897 159 VIATGHV-WPDEE--EATRTY-----FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRD 230 (534)
T ss_pred EECCCCC-CCCCC--hhhccc-----cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeec
Confidence 9999952 22211 111111 1111211 11224689999999999999998887552
Q ss_pred ---C--eEEEEEecC
Q 039923 196 ---A--QVSLVVRDK 205 (395)
Q Consensus 196 ---~--~V~~~~r~~ 205 (395)
. ++++++|+.
T Consensus 231 ~sg~~~~I~a~SRrG 245 (534)
T PRK09897 231 NASEKLNITLMSRTG 245 (534)
T ss_pred CCCCCceEEEEeCCC
Confidence 3 689999987
No 90
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.77 E-value=2.2e-17 Score=163.05 Aligned_cols=200 Identities=10% Similarity=0.046 Sum_probs=105.7
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc-CCcCceeeecCCccccCC---CCCCCCCCCCCCCH
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL-KIYDHLQLHLPKQFCQLP---YVPFPREYPAYPSG 83 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 83 (395)
...++|+||||||||+++|++|+++|++|+++|+....|+-... .....+....+.-....+ ......+++ +-..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp-~R~~ 459 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT-VRWD 459 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc-ccch
Confidence 34589999999999999999999999999999997544332110 000000000000000000 000111111 1111
Q ss_pred HHHHHHHHHHHHHcCCcc--ccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEee
Q 039923 84 QQFITYMEAYANHFEIEP--LLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLH 160 (395)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~--~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~ 160 (395)
....+.++...+ .+.++ +.++++ .. .++.++ ....||.|++|||+ ..++.+++||.+. . .+..
T Consensus 460 k~~l~~i~~il~-~g~~v~~~~gv~l-----G~-----dit~edl~~~gyDAV~IATGA-~kpr~L~IPGeda-~-GV~s 525 (1028)
T PRK06567 460 KNNLDILRLILE-RNNNFKYYDGVAL-----DF-----NITKEQAFDLGFDHIAFCIGA-GQPKVLDIENFEA-K-GVKT 525 (1028)
T ss_pred HHHHHHHHHHHh-cCCceEEECCeEE-----Cc-----cCCHHHHhhcCCCEEEEeCCC-CCCCCCCCCCccC-C-CeEE
Confidence 223333333322 24333 334332 00 133333 45679999999995 2688888999764 1 2222
Q ss_pred cCCCCC-------------CcCCCCCeEEEECCCcCHHHHHHHHhh---CCCeEEEEEecCceeeeccccCCChhHHHHH
Q 039923 161 TSTYKN-------------GVEFRASKVLVVGCGNSGMEISFDLCK---NGAQVSLVVRDKVHILPKKILGRSSFAISVW 224 (395)
Q Consensus 161 ~~~~~~-------------~~~~~~~~v~VvG~G~~a~e~a~~l~~---~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 224 (395)
..++.. .....+++|+|||||.+|+|+|..... .+.++++....+ ..+|.++. ..+..
T Consensus 526 A~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~-~~~~~~d~-----eia~~ 599 (1028)
T PRK06567 526 ASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE-KDLTEEDK-----EIAEE 599 (1028)
T ss_pred HHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh-hhcccccH-----HHHHH
Confidence 222110 001136799999999999999986654 244455554444 44455544 45554
Q ss_pred HHhh
Q 039923 225 LLKW 228 (395)
Q Consensus 225 ~~~~ 228 (395)
+...
T Consensus 600 f~~h 603 (1028)
T PRK06567 600 FIAH 603 (1028)
T ss_pred HHHH
Confidence 5444
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.73 E-value=7.1e-19 Score=149.43 Aligned_cols=119 Identities=28% Similarity=0.343 Sum_probs=75.2
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH---
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT--- 88 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 88 (395)
||+|||||++|+++|.+|++.+.+++|+|+.+..+... ...+ ..... ........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~-~~~~--------~~~~~----------~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNS-GCIP--------SPLLV----------EIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHH-SHHH--------HHHHH----------HHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccc-cccc--------ccccc----------cccccccccccccc
Confidence 69999999999999999999999999999876432100 0000 00000 00000011110
Q ss_pred -HHHHHHHHcCCccccCceEEEEEEcCCC---CcEEEE---Ecc-EEEEeCEEEEeeCCCCCCCCCCCCCC
Q 039923 89 -YMEAYANHFEIEPLLGQEVQWAKYDAAM---GHWRVK---THE-YEFMCRWLIVATGENEVPVLPKIPGI 151 (395)
Q Consensus 89 -~~~~~~~~~~~~~~~~~~V~~v~~~~~~---~~~~v~---~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~ 151 (395)
.+.+.+...+++++.++++.+++..... ..+.+. ..+ .++.||+||+||| +.+..|.+||.
T Consensus 62 ~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG--~~~~~~~i~g~ 130 (201)
T PF07992_consen 62 FKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATG--SRPRTPNIPGE 130 (201)
T ss_dssp GHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEEST--EEEEEESSTTT
T ss_pred cccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCc--cccceeecCCC
Confidence 2222334568888778899999887731 012222 222 8999999999999 77888888886
No 92
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.68 E-value=7e-15 Score=132.06 Aligned_cols=78 Identities=22% Similarity=0.215 Sum_probs=61.8
Q ss_pred cEecCcEEEEcCCCCCCCC--ccccccccccccCCCCCCCCCCCCC---CCCCCeEEEEecccccc--cchhhHHHHHHH
Q 039923 307 TVKEFDSIILATGYRSNVS--SWLKEASLFNQKNNNNPQDSYPKNW---KGKNGVYSVGFARQGLL--GISMDAHKVADD 379 (395)
Q Consensus 307 ~~i~~D~vi~atG~~~~~~--~~~~~~~l~~~~~~g~~~~~~~~~~---~~~~~iya~Gd~~~~~~--~a~~~g~~~a~~ 379 (395)
.++++|+|+++||..|... .+.+-+||. ++++||+...++.++ ++.+|||.+|-+.+... .+..||..+|..
T Consensus 461 ~e~~~DLVVLa~Gmep~~g~~kia~iLgL~-~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~siaqa~aAA~k 539 (622)
T COG1148 461 KEIEADLVVLATGMEPSEGAKKIAKILGLS-QDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIADSIAQAKAAAAK 539 (622)
T ss_pred eecccceEEEeeccccCcchHHHHHhcCcc-cCCCCccccCCCCcccccccCCcEEEeecccCCccHHHHHHHhHHHHHH
Confidence 4789999999999999653 356666998 899999988877776 58899999999887766 677777777666
Q ss_pred HHhhhc
Q 039923 380 IASQWN 385 (395)
Q Consensus 380 i~~~~~ 385 (395)
....+.
T Consensus 540 A~~~l~ 545 (622)
T COG1148 540 AAQLLG 545 (622)
T ss_pred HHHHhh
Confidence 655543
No 93
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.55 E-value=2.2e-13 Score=113.07 Aligned_cols=296 Identities=17% Similarity=0.200 Sum_probs=147.2
Q ss_pred eEEECCChHHHHHHHHHHHc--CCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 039923 13 PVIVGAGPSGLAAAACLKER--GVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITYM 90 (395)
Q Consensus 13 vvIIG~G~aG~~~A~~l~~~--g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (395)
.+|||||+||.+||-+|+.. ..+++|+-..+.+-..- .-..+.+|+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvt--------------------------------n~~~i~~yl 49 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVT--------------------------------NYQKIGQYL 49 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHh--------------------------------hHHHHHHHH
Confidence 58999999999999999986 45888887765321100 001112222
Q ss_pred HHH------HHHcCCcc--ccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccEeec
Q 039923 91 EAY------ANHFEIEP--LLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPGISEFRGRLLHT 161 (395)
Q Consensus 91 ~~~------~~~~~~~~--~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~~~~~~~ 161 (395)
+++ ....+-.+ ..+. |...+..+ -.+.+.+ ..+.|++|++|+| ++|... ..|.+ ..++..
T Consensus 50 ekfdv~eq~~~elg~~f~~~~~~-v~~~~s~e----hci~t~~g~~~ky~kKOG~tg--~kPklq-~E~~n---~~Iv~i 118 (334)
T KOG2755|consen 50 EKFDVKEQNCHELGPDFRRFLND-VVTWDSSE----HCIHTQNGEKLKYFKLCLCTG--YKPKLQ-VEGIN---PKIVGI 118 (334)
T ss_pred HhcCccccchhhhcccHHHHHHh-hhhhcccc----ceEEecCCceeeEEEEEEecC--CCccee-ecCCC---ceEEEE
Confidence 111 00111111 0111 33333322 2366655 7899999999999 566542 22222 233333
Q ss_pred CCCCCC-----cCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHH
Q 039923 162 STYKNG-----VEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDR 236 (395)
Q Consensus 162 ~~~~~~-----~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (395)
.+.... ...+.|.|.|+|.|-++.|++.++.. ..|+|....+ ++....... ....++-..+ ....+.
T Consensus 119 rDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~--~nv~w~ikd~-~IsaTFfdp----Gaaef~~i~l-~a~~s~ 190 (334)
T KOG2755|consen 119 RDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKI--LNVTWKIKDE-GISATFFDP----GAAEFYDINL-RADRST 190 (334)
T ss_pred ecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhc--ceeEEEecch-hhhhcccCc----cHHHHhHhhh-hccccc
Confidence 222222 23478999999999999999999874 4799988877 333221110 0001110000 000000
Q ss_pred H---HHHhh-hhhccchhhcCCCCCCCCCCccc--CCCCCCcccChhhHhhhhcCCeEEecC--ccEE-ecCeEEEeCCc
Q 039923 237 F---LLFCS-RLVLGDTKQIGIQRPKMGPLQWK--NSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKF-TAKGAEFVNRT 307 (395)
Q Consensus 237 ~---~~~~~-~~~~~~~~~~gi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~-~~~~v~~~~g~ 307 (395)
. ...++ ...+..-+...+ -+.++|.+-. ...+... ........++...+.+..+ -..+ ..++....++
T Consensus 191 ~~iaiKh~q~iea~pk~~~n~v-g~algpDw~s~~dl~g~~e-seer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~- 267 (334)
T KOG2755|consen 191 RIIAIKHFQYIEAFPKCEENNV-GPALGPDWHSQIDLQGISE-SENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADN- 267 (334)
T ss_pred chhhhhhhhhhhhcCcccccCc-ccccCcchhhhcccccchh-hhhhhhHHhhhheeeeccchhhcccccccccccccc-
Confidence 0 00000 000000000000 0111221110 0111111 1111222222222222211 0111 1112222333
Q ss_pred EecCcEEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEEecccc
Q 039923 308 VKEFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNWKGKNGVYSVGFARQG 365 (395)
Q Consensus 308 ~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~ 365 (395)
.+.+|.++++||..|+.+ +.-.-.+. ..++|.+.++ ..+.|+.|++|++||....
T Consensus 268 qlt~d~ivSatgvtpn~e-~~~~~~lq-~~edggikvd-d~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 268 QLTCDFIVSATGVTPNSE-WAMNKMLQ-ITEDGGIKVD-DAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred eeeeeEEEeccccCcCce-EEecChhh-hccccCeeeh-hhccccccceeeecceecc
Confidence 578999999999999996 54333344 5578888888 7889999999999997653
No 94
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.55 E-value=3.2e-14 Score=121.31 Aligned_cols=84 Identities=10% Similarity=0.080 Sum_probs=64.9
Q ss_pred cEecCcEEEEcCCCCCCCCccccccccccccCCCCCCCCCCCCC-CCCCCeEEEEecccccc-----cchhhHHHHHHHH
Q 039923 307 TVKEFDSIILATGYRSNVSSWLKEASLFNQKNNNNPQDSYPKNW-KGKNGVYSVGFARQGLL-----GISMDAHKVADDI 380 (395)
Q Consensus 307 ~~i~~D~vi~atG~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~-~~~~~iya~Gd~~~~~~-----~a~~~g~~~a~~i 380 (395)
++++++++-.....++. .++....+ .|..||+.+|..+++ +.+||+|++|||.+.|+ ....|...+-.|+
T Consensus 281 ~ei~yslLHv~Ppms~p--e~l~~s~~--adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl 356 (446)
T KOG3851|consen 281 EEIEYSLLHVTPPMSTP--EVLANSDL--ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNL 356 (446)
T ss_pred eEEeeeeeeccCCCCCh--hhhhcCcc--cCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhH
Confidence 47889988887777664 55666666 569999999977776 58999999999999988 3345667888888
Q ss_pred Hhhhcccccccccc
Q 039923 381 ASQWNSETRHLWLD 394 (395)
Q Consensus 381 ~~~~~~~~~~~~~~ 394 (395)
...++++..-++.|
T Consensus 357 ~~~m~g~~pt~~yd 370 (446)
T KOG3851|consen 357 TQVMQGKRPTMKYD 370 (446)
T ss_pred HHHhcCCCcceeec
Confidence 88888776655544
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.52 E-value=3.6e-14 Score=125.96 Aligned_cols=133 Identities=22% Similarity=0.299 Sum_probs=95.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc-----------CCcCceeeecCC--ccc-----cCCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL-----------KIYDHLQLHLPK--QFC-----QLPY 70 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~-----------~~~~~~~~~~~~--~~~-----~~~~ 70 (395)
+.+||+|||||||||+||..+.+.|.+|+|||+.+.+|--+.- +.+.....+.|. +++ +|..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 3589999999999999999999999999999999877642111 011111111220 000 1100
Q ss_pred C-----------CC-----CCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEE
Q 039923 71 V-----------PF-----PREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWL 133 (395)
Q Consensus 71 ~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~l 133 (395)
. .+ ..-++.....+.+++.+...+++.+++++.+++|.+++..+ ..|.+++++ .++.||.|
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSL 159 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEE
Confidence 0 00 00112224578899999999999999999999999999987 788999988 48999999
Q ss_pred EEeeCCCCCC
Q 039923 134 IVATGENEVP 143 (395)
Q Consensus 134 VlAtG~~~~~ 143 (395)
|+|||..|.|
T Consensus 160 ilAtGG~S~P 169 (408)
T COG2081 160 ILATGGKSWP 169 (408)
T ss_pred EEecCCcCCC
Confidence 9999966555
No 96
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.45 E-value=8.1e-13 Score=122.48 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=75.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc---------C---CcCceeeec--CCccc-----cCC--
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL---------K---IYDHLQLHL--PKQFC-----QLP-- 69 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~---------~---~~~~~~~~~--~~~~~-----~~~-- 69 (395)
|||+|||||+|||+||..+++.|.+|+|+|+++.+|.-... + .+....... ...++ .++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 69999999999999999999999999999999877631110 0 000000000 00000 000
Q ss_pred ---------CCCC---CCC--CCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE-ccEEEEeCEEE
Q 039923 70 ---------YVPF---PRE--YPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT-HEYEFMCRWLI 134 (395)
Q Consensus 70 ---------~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~-~~~~~~~d~lV 134 (395)
..+. .++ +|..-...++++.+...+++.+++++++++|.+++..++ +.|.|.+ ++..+.+|.||
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~f~v~~~~~~~~~a~~vI 159 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-GVFGVKTKNGGEYEADAVI 159 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-EEEEEEETTTEEEEESEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-ceeEeeccCcccccCCEEE
Confidence 0000 000 122235678999999999999999999999999998762 4599999 55999999999
Q ss_pred EeeCCCCCC
Q 039923 135 VATGENEVP 143 (395)
Q Consensus 135 lAtG~~~~~ 143 (395)
+|||..+.|
T Consensus 160 LAtGG~S~p 168 (409)
T PF03486_consen 160 LATGGKSYP 168 (409)
T ss_dssp E----SSSG
T ss_pred EecCCCCcc
Confidence 999964433
No 97
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.42 E-value=1.1e-11 Score=115.32 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=32.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
|.+||+|||+|++|+++|..|++.|.+|++||+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 35899999999999999999999999999999864
No 98
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.35 E-value=7.8e-12 Score=112.74 Aligned_cols=129 Identities=23% Similarity=0.226 Sum_probs=86.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCC-----cCceee-------ecC-CccccCC----CCCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKI-----YDHLQL-------HLP-KQFCQLP----YVPF 73 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~-----~~~~~~-------~~~-~~~~~~~----~~~~ 73 (395)
+||+|||||++|+++|+.|++.|++|+|+|+....+..+.... ...+.. ... ..+.... ....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 5899999999999999999999999999999976543222110 000000 000 0000000 0011
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCC
Q 039923 74 PREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVATGENE 141 (395)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~ 141 (395)
+.......++..+.+.+.+.+.+.+++++++++|+.+...+ +.+.+...+ .++++|+||+|+|.++
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEEEEEcCccEEEEeCEEEECCCcch
Confidence 11112235788899999999999999999999999998876 444454433 7899999999999654
No 99
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.35 E-value=1.8e-11 Score=98.89 Aligned_cols=124 Identities=22% Similarity=0.286 Sum_probs=88.7
Q ss_pred EEECCChHHHHHHHHHHHc-----CCCEEEEecCCCc-ccccccCCcCceeeecCCccccC-CCCC-----------C--
Q 039923 14 VIVGAGPSGLAAAACLKER-----GVPSLIIEKESCL-ASLWKLKIYDHLQLHLPKQFCQL-PYVP-----------F-- 73 (395)
Q Consensus 14 vIIG~G~aG~~~A~~l~~~-----g~~v~lie~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~-- 73 (395)
+|||||++|++++.+|.++ ..+|+|||+.+.- |+.|+....+.+.++.+...+.. +.-+ .
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999998 3589999996542 24776654555556555543322 1100 1
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHc------CCcc-ccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCC
Q 039923 74 ---PREYPAYPSGQQFITYMEAYANHF------EIEP-LLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGE 139 (395)
Q Consensus 74 ---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~ 139 (395)
......|+++..+-+|+++.++.. ++++ +.+.+|+.++..+ +.|.+.+.+ ..+.+|.||+|||.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD--DGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC--CcEEEEECCCCEEEeCEEEECCCC
Confidence 112246889999999998777753 3443 4577899999987 667787776 88999999999994
No 100
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.33 E-value=1.9e-11 Score=114.50 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=84.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecC-CCc---cccccc--------------CCcCceeeecCCccccCCCCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKE-SCL---ASLWKL--------------KIYDHLQLHLPKQFCQLPYVP 72 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~-~~~---~g~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 72 (395)
+||+||||||+|+++|+.|++.|++|+|+|+. ... |+.... ..+.+..+..+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 68999999999999999999999999999997 211 111111 111222222221100000011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc---------EEEEeCEEEEeeCCCCCC
Q 039923 73 FPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---------YEFMCRWLIVATGENEVP 143 (395)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---------~~~~~d~lVlAtG~~~~~ 143 (395)
....+...+.+..|.+++.+.+.+.|++++. ++|+.+...+ +.+.++..+ .++.++.||.|+|.++..
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIH-GLFLKLERDR--DGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEEcC--CeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 1111122378999999999999999999864 4688887766 566666431 579999999999975543
No 101
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.32 E-value=3.6e-11 Score=105.06 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=86.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc-ccccC-CcCceeeecC-Cccc---cCCCCCCCCCCCCCCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS-LWKLK-IYDHLQLHLP-KQFC---QLPYVPFPREYPAYPS 82 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g-~~~~~-~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~ 82 (395)
..+||+||||||+|++||++|++.|++|+|+|+...+|| .|... .++...+..+ ..+. ..++.....+ ....+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g-~~~vd 102 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDG-LYVAD 102 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCc-ceecc
Confidence 458999999999999999999999999999999988775 33211 1111111000 0000 1111111111 12346
Q ss_pred HHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE------------ccEEEEeCEEEEeeCCCC
Q 039923 83 GQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT------------HEYEFMCRWLIVATGENE 141 (395)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~------------~~~~~~~d~lVlAtG~~~ 141 (395)
+.++...+.+.+.+.+++++.+++|..+...++....-+.. +..++.++.||+|||.++
T Consensus 103 ~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 103 SVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 77888889999999999999999999987655312111111 115799999999999654
No 102
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.31 E-value=5.7e-11 Score=115.91 Aligned_cols=142 Identities=21% Similarity=0.229 Sum_probs=93.9
Q ss_pred CCCCCCCCCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc------------------------CCcCc
Q 039923 1 MSSKAKRFWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL------------------------KIYDH 56 (395)
Q Consensus 1 m~~~~~~~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~------------------------~~~~~ 56 (395)
|+.+.++...+||+||||||+|+++|..|.+.|++|+|||+........+. .....
T Consensus 1 ~~~~~~~~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (538)
T PRK06183 1 MAAQHPDAHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHG 80 (538)
T ss_pred CCCCCCccCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCc
Confidence 666665566789999999999999999999999999999998754321110 00111
Q ss_pred eeeecCC--ccccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEc---c--
Q 039923 57 LQLHLPK--QFCQLPY-VPFPREYP--AYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTH---E-- 125 (395)
Q Consensus 57 ~~~~~~~--~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~---~-- 125 (395)
....... ....++. ......++ ....+..+.+.+.+.+.+. +++++++++|++++.++ +.+++++. +
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~v~~~~~~G~~ 158 (538)
T PRK06183 81 MRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVTVTLTDADGQR 158 (538)
T ss_pred eEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEEEEEEcCCCCE
Confidence 1111110 1111110 00001111 2345677888888877775 89999999999999877 55666664 2
Q ss_pred EEEEeCEEEEeeCCCCCCC
Q 039923 126 YEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 126 ~~~~~d~lVlAtG~~~~~~ 144 (395)
.++++|+||.|+|..|..+
T Consensus 159 ~~i~ad~vVgADG~~S~vR 177 (538)
T PRK06183 159 ETVRARYVVGCDGANSFVR 177 (538)
T ss_pred EEEEEEEEEecCCCchhHH
Confidence 5899999999999866543
No 103
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.31 E-value=5.1e-11 Score=112.68 Aligned_cols=131 Identities=21% Similarity=0.211 Sum_probs=86.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc------ccccCC----cCceeeecC---------------C
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS------LWKLKI----YDHLQLHLP---------------K 63 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g------~~~~~~----~~~~~~~~~---------------~ 63 (395)
+++||+||||||+|++||+.|++.|++|+|+||...++. ...... ++.+....+ .
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 358999999999999999999999999999999865442 111100 110000000 0
Q ss_pred ccccCCCC--C--CCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcE-EEEEccEEEEeCEEEEeeC
Q 039923 64 QFCQLPYV--P--FPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHW-RVKTHEYEFMCRWLIVATG 138 (395)
Q Consensus 64 ~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~-~v~~~~~~~~~d~lVlAtG 138 (395)
....+.+. . .+......+.+.+|.+++.+.+.+.|++++.+++|+++...+ +.+ .+..++.++.++.||+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G 161 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADG 161 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeC
Confidence 00000000 0 001112235788899999999999999999999999988765 443 3444457899999999999
Q ss_pred CCC
Q 039923 139 ENE 141 (395)
Q Consensus 139 ~~~ 141 (395)
..+
T Consensus 162 ~~s 164 (428)
T PRK10157 162 VNS 164 (428)
T ss_pred CCH
Confidence 643
No 104
>PRK08244 hypothetical protein; Provisional
Probab=99.31 E-value=4.9e-11 Score=115.30 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=86.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccc-----c---------C----------CcCceeeecCCcc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWK-----L---------K----------IYDHLQLHLPKQF 65 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~-----~---------~----------~~~~~~~~~~~~~ 65 (395)
.+||+||||||+|+++|..|++.|++|+|||+.+.....-+ . . .+...........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 48999999999999999999999999999999864311000 0 0 0011111000000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc---c-EEEEeCEEEEeeCCCC
Q 039923 66 CQLPYVPFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH---E-YEFMCRWLIVATGENE 141 (395)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~---~-~~~~~d~lVlAtG~~~ 141 (395)
..+........+....++..+.+.+.+.+++.+++++++++|++++..+ +.+++++. + .++++|+||.|+|.+|
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 0011001011111235678888999998888899999999999998776 55555543 2 5799999999999766
Q ss_pred C
Q 039923 142 V 142 (395)
Q Consensus 142 ~ 142 (395)
.
T Consensus 160 ~ 160 (493)
T PRK08244 160 I 160 (493)
T ss_pred H
Confidence 3
No 105
>PRK06847 hypothetical protein; Provisional
Probab=99.30 E-value=8.4e-11 Score=109.84 Aligned_cols=133 Identities=18% Similarity=0.154 Sum_probs=89.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc----cc-cc-------------------CCcCceeeecCC--
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS----LW-KL-------------------KIYDHLQLHLPK-- 63 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g----~~-~~-------------------~~~~~~~~~~~~-- 63 (395)
++||+|||||++|+++|..|.+.|++|+|+|+...... .. .. ..........+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 57899999999999999999999999999999864321 00 00 001111111110
Q ss_pred ccccCCCCCC-CCCC--CCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCC
Q 039923 64 QFCQLPYVPF-PREY--PAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGE 139 (395)
Q Consensus 64 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~ 139 (395)
....++...+ ...+ .....+.++.+++.+.+.+.+++++++++|+.++..+ +.+.+++.+ .++.+|.||+|+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEcCCCEEEcCEEEECcCC
Confidence 0011110000 0001 2245678899999999988899999999999998766 567777765 78999999999997
Q ss_pred CCCCC
Q 039923 140 NEVPV 144 (395)
Q Consensus 140 ~~~~~ 144 (395)
++..+
T Consensus 162 ~s~~r 166 (375)
T PRK06847 162 YSKVR 166 (375)
T ss_pred Ccchh
Confidence 66443
No 106
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.28 E-value=2.3e-11 Score=102.01 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=82.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCC-------------------
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPY------------------- 70 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------------------- 70 (395)
+.+|+|||+|++|++||..|+..|.+|++|||...+||-....+.++...+-...+.....
T Consensus 1 ~~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CCcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 3579999999999999999999999999999999999855444333322221111111000
Q ss_pred ----CCCC------CCCCC-CCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEee
Q 039923 71 ----VPFP------REYPA-YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVAT 137 (395)
Q Consensus 71 ----~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAt 137 (395)
+.+. ..... +.-...+....+ ++.+ ++++.++++|+.+.+.+ +.|++++++ +...+|.||||.
T Consensus 81 ~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak-~LAt-dL~V~~~~rVt~v~~~~--~~W~l~~~~g~~~~~~d~vvla~ 156 (331)
T COG3380 81 TPAVWTFTGDGSPPRGDEDPYVGEPGMSALAK-FLAT-DLTVVLETRVTEVARTD--NDWTLHTDDGTRHTQFDDVVLAI 156 (331)
T ss_pred cccccccccCCCCCCCCCCccccCcchHHHHH-HHhc-cchhhhhhhhhhheecC--CeeEEEecCCCcccccceEEEec
Confidence 0000 00000 222122222222 2222 67888999999999986 899999965 789999999987
Q ss_pred CC
Q 039923 138 GE 139 (395)
Q Consensus 138 G~ 139 (395)
=+
T Consensus 157 PA 158 (331)
T COG3380 157 PA 158 (331)
T ss_pred CC
Confidence 63
No 107
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.28 E-value=6.7e-11 Score=103.00 Aligned_cols=132 Identities=21% Similarity=0.296 Sum_probs=86.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc-ccccC-CcCceeeecC-CccccCCCCCCCCCCC--CCCCH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS-LWKLK-IYDHLQLHLP-KQFCQLPYVPFPREYP--AYPSG 83 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g-~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 83 (395)
..+||+||||||+|+++|+.|++.|.+|+|+||...+|+ +|... .++.+.+..+ ..+...-..++...-. ....+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 358999999999999999999999999999999988864 54322 1111111101 0111111111111101 12356
Q ss_pred HHHHHHHHHHHHHcCCccccCceEEEEEEcCCC-CcEEEEEc-----------c-EEEEeCEEEEeeCCC
Q 039923 84 QQFITYMEAYANHFEIEPLLGQEVQWAKYDAAM-GHWRVKTH-----------E-YEFMCRWLIVATGEN 140 (395)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~-~~~~v~~~-----------~-~~~~~d~lVlAtG~~ 140 (395)
.++.+.+...+.+.+++++.+++|..+...++. +..-+..+ + ..+.++.||.|||..
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 788888888899999999999999999876531 11112221 1 579999999999953
No 108
>PLN02463 lycopene beta cyclase
Probab=99.28 E-value=7.1e-11 Score=111.28 Aligned_cols=125 Identities=15% Similarity=0.127 Sum_probs=85.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc-----ccccc------------CCcCceeeecCCccccCCCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA-----SLWKL------------KIYDHLQLHLPKQFCQLPYV 71 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~-----g~~~~------------~~~~~~~~~~~~~~~~~~~~ 71 (395)
..+||+||||||+|+++|..|++.|++|+|+|+.+... +.|.. +.++...+..+.. ..
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~-----~~ 101 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDG-----KK 101 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCC-----CC
Confidence 35899999999999999999999999999999975321 22211 0111111100000 00
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCC
Q 039923 72 PFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENE 141 (395)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~ 141 (395)
......-..+.+.++.+.+.+.+.+.+++++ .++|++++..+ +.+.|++++ .+++++.||.|+|..+
T Consensus 102 ~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 102 KDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred ccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeEEEEECCCCEEEcCEEEECcCCCc
Confidence 0000011235788999999988888898875 57899998776 667788777 6899999999999644
No 109
>PRK06834 hypothetical protein; Provisional
Probab=99.27 E-value=6.4e-11 Score=113.59 Aligned_cols=132 Identities=20% Similarity=0.272 Sum_probs=88.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc--c-----cccc--------CCcCcee-----eecCC-ccccC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA--S-----LWKL--------KIYDHLQ-----LHLPK-QFCQL 68 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~--g-----~~~~--------~~~~~~~-----~~~~~-~~~~~ 68 (395)
.+||+||||||+|+++|..|++.|++|+|||+.+... + ++.. ..++.+. ..... ....+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4799999999999999999999999999999986421 1 1100 0001100 00000 00001
Q ss_pred CCCCCC--CCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCC
Q 039923 69 PYVPFP--REYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVP 143 (395)
Q Consensus 69 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~ 143 (395)
.....+ ..+.....+..+.+.+.+.+++.+++++++++|+.++.++ ..+.+++.+ .++++|+||.|+|.+|..
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 111111 1112335678888889888888899999999999998876 566777655 689999999999976643
No 110
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.27 E-value=3.9e-11 Score=112.47 Aligned_cols=130 Identities=22% Similarity=0.180 Sum_probs=88.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc------CCc----Ccee----eecCCccccCCCCC--
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL------KIY----DHLQ----LHLPKQFCQLPYVP-- 72 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~------~~~----~~~~----~~~~~~~~~~~~~~-- 72 (395)
+++||+||||||||++||+.|++.|++|+++|+...+|.-... ... +... ..+......++...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 5699999999999999999999999999999998766531111 101 0000 00111111111100
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc-c-EEEEeCEEEEeeCCC
Q 039923 73 --FPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH-E-YEFMCRWLIVATGEN 140 (395)
Q Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~-~-~~~~~d~lVlAtG~~ 140 (395)
.+......+.+..|.+++...+.+.|.+++.++++..+..+++ .+.+... + .+++++++|.|+|..
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDD--GVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCC--cEEEEEEcCCEEEEcCEEEECCCcc
Confidence 1111122346889999999999999999999999999998874 3333332 2 699999999999953
No 111
>PRK08013 oxidoreductase; Provisional
Probab=99.27 E-value=5.6e-11 Score=111.81 Aligned_cols=133 Identities=16% Similarity=0.160 Sum_probs=87.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc---cc---ccc--------------CCc-----------Ccee
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA---SL---WKL--------------KIY-----------DHLQ 58 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~---g~---~~~--------------~~~-----------~~~~ 58 (395)
.+||+||||||+|+++|..|++.|++|+|+|+.+... |. .+. ..+ ..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 3799999999999999999999999999999986421 10 000 001 1111
Q ss_pred eecCCccc--cCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEE
Q 039923 59 LHLPKQFC--QLPYVPFPRE-YPAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWL 133 (395)
Q Consensus 59 ~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~l 133 (395)
+..+.... .+........ ....+.+..+.+.+.+.+.+. +++++++++|++++.++ ..+.+++.+ +++++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLTLKDGSMLTARLV 160 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEEEcCCCEEEeeEE
Confidence 11110000 0000000000 012356788888888888775 78999999999998876 556677655 78999999
Q ss_pred EEeeCCCCCCC
Q 039923 134 IVATGENEVPV 144 (395)
Q Consensus 134 VlAtG~~~~~~ 144 (395)
|.|+|.+|..+
T Consensus 161 VgADG~~S~vR 171 (400)
T PRK08013 161 VGADGANSWLR 171 (400)
T ss_pred EEeCCCCcHHH
Confidence 99999766543
No 112
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.27 E-value=6.9e-11 Score=110.57 Aligned_cols=133 Identities=18% Similarity=0.181 Sum_probs=91.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecC-CCccc-----cccc--------------------CCcCceeeecCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKE-SCLAS-----LWKL--------------------KIYDHLQLHLPK 63 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~-~~~~g-----~~~~--------------------~~~~~~~~~~~~ 63 (395)
++||+||||||+|+++|..|++.|++|+|||+. ..+-. .+.. ..+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 579999999999999999999999999999997 21110 0000 011111111111
Q ss_pred -ccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcC-CccccCceEEEEEEcCCCCcEEEEEc-c-EEEEeCEEEEeeC
Q 039923 64 -QFCQLPYVPFP-REYPAYPSGQQFITYMEAYANHFE-IEPLLGQEVQWAKYDAAMGHWRVKTH-E-YEFMCRWLIVATG 138 (395)
Q Consensus 64 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~v~~~~~~~~~~v~~~-~-~~~~~d~lVlAtG 138 (395)
....++..... .......++.++.+.+.+.+.+.+ ++++.+++|+.++.++ ..++++++ + +++++|+||.|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEEEcCCCcEEecCEEEECCC
Confidence 11222222222 122234578999999999998876 8999999999999987 55557766 5 8899999999999
Q ss_pred CCCCCC
Q 039923 139 ENEVPV 144 (395)
Q Consensus 139 ~~~~~~ 144 (395)
.+|..+
T Consensus 160 ~~S~vR 165 (387)
T COG0654 160 ANSAVR 165 (387)
T ss_pred CchHHH
Confidence 766443
No 113
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.27 E-value=8.1e-11 Score=110.56 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=87.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc----c-ccc-----c---------CCcC-----------ceee
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA----S-LWK-----L---------KIYD-----------HLQL 59 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~----g-~~~-----~---------~~~~-----------~~~~ 59 (395)
++||+|||||++|+++|+.|+++|++|+|||+.+... + -.+ . ..++ .+.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 5899999999999999999999999999999975321 1 000 0 0011 1110
Q ss_pred ecCC--ccccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEE
Q 039923 60 HLPK--QFCQLPYVPF-PREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIV 135 (395)
Q Consensus 60 ~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVl 135 (395)
.... ....++.... .......+++..+.+.+.+.+++.+++++.+++|++++.++ +.+.+++++ .++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVRLRLDDGRRLEAALAIA 163 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEEEEECCCCEEEeCEEEE
Confidence 0000 0011111000 00111234678888888888888899999999999998776 567777765 7899999999
Q ss_pred eeCCCCC
Q 039923 136 ATGENEV 142 (395)
Q Consensus 136 AtG~~~~ 142 (395)
|+|.++.
T Consensus 164 AdG~~S~ 170 (392)
T PRK08773 164 ADGAAST 170 (392)
T ss_pred ecCCCch
Confidence 9997653
No 114
>PRK06184 hypothetical protein; Provisional
Probab=99.26 E-value=1.4e-10 Score=112.44 Aligned_cols=132 Identities=21% Similarity=0.219 Sum_probs=86.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc------cccc------------------CCcCceeeecCCc-
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS------LWKL------------------KIYDHLQLHLPKQ- 64 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g------~~~~------------------~~~~~~~~~~~~~- 64 (395)
++||+||||||+|+++|..|++.|++|+|||+.+.+.. ++.. ..++......+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 47999999999999999999999999999999864421 1000 0011111110000
Q ss_pred cccCCCC-------CCCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE---cc-EEEEeCEE
Q 039923 65 FCQLPYV-------PFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT---HE-YEFMCRWL 133 (395)
Q Consensus 65 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~---~~-~~~~~d~l 133 (395)
....... ..+.......++..+.+.+.+.+.+.+++++++++|++++.++ ..++++. .+ +++++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~~~~~~i~a~~v 160 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--DGVTARVAGPAGEETVRARYL 160 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEEEEEEeCCCeEEEEeCEE
Confidence 0000000 0000111234677788888888888899999999999998876 5566665 33 78999999
Q ss_pred EEeeCCCCCC
Q 039923 134 IVATGENEVP 143 (395)
Q Consensus 134 VlAtG~~~~~ 143 (395)
|.|+|.+|..
T Consensus 161 VgADG~~S~v 170 (502)
T PRK06184 161 VGADGGRSFV 170 (502)
T ss_pred EECCCCchHH
Confidence 9999987643
No 115
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.25 E-value=4.7e-11 Score=112.64 Aligned_cols=133 Identities=15% Similarity=0.180 Sum_probs=86.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc-------------ccccc---------CCcCc-----------
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA-------------SLWKL---------KIYDH----------- 56 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~-------------g~~~~---------~~~~~----------- 56 (395)
.+||+|||||++|+++|..|++.|++|+|||+.+... ..+.. ..++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 4799999999999999999999999999999976210 00000 00111
Q ss_pred eeeecCCcc--ccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCE
Q 039923 57 LQLHLPKQF--CQLPYVPFP-REYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRW 132 (395)
Q Consensus 57 ~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~ 132 (395)
+.+...... ..++..... ......+.+..+.+.+.+.+.+.+++++.+++|.+++..+ +.+.|++.+ +++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g~~~~a~~ 159 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG--DDWLLTLADGRQLRAPL 159 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEEEEECCCCEEEeCE
Confidence 111000000 001000000 0011234566777777777777789999999999998776 567787766 6899999
Q ss_pred EEEeeCCCCCCC
Q 039923 133 LIVATGENEVPV 144 (395)
Q Consensus 133 lVlAtG~~~~~~ 144 (395)
||.|+|.++..+
T Consensus 160 vVgAdG~~S~vR 171 (405)
T PRK05714 160 VVAADGANSAVR 171 (405)
T ss_pred EEEecCCCchhH
Confidence 999999766443
No 116
>PRK10015 oxidoreductase; Provisional
Probab=99.25 E-value=1e-10 Score=110.55 Aligned_cols=130 Identities=16% Similarity=0.205 Sum_probs=85.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc------ccccCC----cCceeeec------CCc-c-------
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS------LWKLKI----YDHLQLHL------PKQ-F------- 65 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g------~~~~~~----~~~~~~~~------~~~-~------- 65 (395)
.+||+||||||+|++||+.|++.|++|+||||....|. ...... .+.+.... ... +
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEES 84 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCC
Confidence 48999999999999999999999999999999865432 111110 11110000 000 0
Q ss_pred -ccCCCC--C--CCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEE-EEEccEEEEeCEEEEeeCC
Q 039923 66 -CQLPYV--P--FPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWR-VKTHEYEFMCRWLIVATGE 139 (395)
Q Consensus 66 -~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~-v~~~~~~~~~d~lVlAtG~ 139 (395)
...++. . .+......+.+..|.+++.+.+++.|++++.+++|+.+...+ +.+. +...+.++.++.||+|+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 85 AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGV 162 (429)
T ss_pred ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCc
Confidence 000000 0 000112235688888899999999999999999999987664 4443 4444578999999999996
Q ss_pred CC
Q 039923 140 NE 141 (395)
Q Consensus 140 ~~ 141 (395)
.+
T Consensus 163 ~s 164 (429)
T PRK10015 163 NS 164 (429)
T ss_pred ch
Confidence 43
No 117
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.24 E-value=1.1e-10 Score=110.06 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=87.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCcc------c-cccc---------CC----------cCceeeec
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERG--VPSLIIEKESCLA------S-LWKL---------KI----------YDHLQLHL 61 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g--~~v~lie~~~~~~------g-~~~~---------~~----------~~~~~~~~ 61 (395)
++||+||||||+|+++|..|++.| ++|+|+|+.+... + .+.. .. ...+....
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 489999999999999999999995 9999999975321 0 0000 00 01111110
Q ss_pred CC-------ccccCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCE
Q 039923 62 PK-------QFCQLPY-VPFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRW 132 (395)
Q Consensus 62 ~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~ 132 (395)
.. ....+.. ......+...+.+..+.+.+.+.+.+.+++++++++|+.++..+ ..+.+++.+ .++.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~ 158 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSDGSVLEARL 158 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECCCCEEEeCE
Confidence 00 0001100 00001111245788999999998888899999999999998776 667777765 7899999
Q ss_pred EEEeeCCCCC
Q 039923 133 LIVATGENEV 142 (395)
Q Consensus 133 lVlAtG~~~~ 142 (395)
||.|+|.++.
T Consensus 159 vI~AdG~~S~ 168 (403)
T PRK07333 159 LVAADGARSK 168 (403)
T ss_pred EEEcCCCChH
Confidence 9999997554
No 118
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.24 E-value=1.3e-10 Score=109.07 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=85.7
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCc----eeee--cCCcc-----ccCCCCCCCCCCCC-
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDH----LQLH--LPKQF-----CQLPYVPFPREYPA- 79 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~----~~~~--~~~~~-----~~~~~~~~~~~~~~- 79 (395)
||+|||||++|+++|..|++.|++|+|+|+.+..++......+.. +.+. ....+ +.++........+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 799999999999999999999999999999887765322221111 0000 00000 01111110001111
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCC
Q 039923 80 YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENE 141 (395)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~ 141 (395)
.+++..+.+.+.+.+.+.+++++ .++|..+.... ...+.|++++ .+++++.||+|+|.++
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 35788999999998888888775 66788887662 2667788776 6899999999999755
No 119
>PRK07190 hypothetical protein; Provisional
Probab=99.24 E-value=1.8e-10 Score=110.30 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=86.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc--------------CCcC-----c-----eeeecCCcc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL--------------KIYD-----H-----LQLHLPKQF 65 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~--------------~~~~-----~-----~~~~~~~~~ 65 (395)
.+||+||||||+|+++|..|++.|++|+|||+.+.....-+. ..++ + ........+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 479999999999999999999999999999998654211110 0000 0 000000111
Q ss_pred ccCCC--C-CCC---CCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeC
Q 039923 66 CQLPY--V-PFP---REYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATG 138 (395)
Q Consensus 66 ~~~~~--~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG 138 (395)
..... + ... ........+..+...+.+.+.+.|++++++++|+.++.++ +.+.+++.+ .++++++||.|+|
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~~~~g~~v~a~~vVgADG 162 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTTLSNGERIQSRYVIGADG 162 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEEECCCcEEEeCEEEECCC
Confidence 00000 0 000 0001224567788888888888899999999999998876 555566555 7899999999999
Q ss_pred CCCC
Q 039923 139 ENEV 142 (395)
Q Consensus 139 ~~~~ 142 (395)
..+.
T Consensus 163 ~~S~ 166 (487)
T PRK07190 163 SRSF 166 (487)
T ss_pred CCHH
Confidence 7653
No 120
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.23 E-value=9.9e-11 Score=109.10 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=88.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc-------c-c---------------cccc-----CCcCceeeec
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL-------A-S---------------LWKL-----KIYDHLQLHL 61 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~-------~-g---------------~~~~-----~~~~~~~~~~ 61 (395)
+.||+|||||++|+++|..|++.|++|+|+|+.+.. + + .|.. ..+..+.+..
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 479999999999999999999999999999986311 1 1 1100 0011111111
Q ss_pred CC--ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC-CccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeC
Q 039923 62 PK--QFCQLPYVPFPREYPAYPSGQQFITYMEAYANHFE-IEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATG 138 (395)
Q Consensus 62 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG 138 (395)
+. ....++.. ........+.+.++.+.+.+.+.+.+ ++++.+++++++..++ +.+++++++.++++|.||.|+|
T Consensus 81 ~~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~~~~~adlvIgADG 157 (374)
T PRK06617 81 NKASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIKFDDKQIKCNLLIICDG 157 (374)
T ss_pred CCCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEEEcCCEEeeCEEEEeCC
Confidence 11 01111110 00011223578899999988888775 7788899999998776 5677887777899999999999
Q ss_pred CCCCCC
Q 039923 139 ENEVPV 144 (395)
Q Consensus 139 ~~~~~~ 144 (395)
.+|..+
T Consensus 158 ~~S~vR 163 (374)
T PRK06617 158 ANSKVR 163 (374)
T ss_pred CCchhH
Confidence 776554
No 121
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.21 E-value=1.7e-10 Score=109.25 Aligned_cols=136 Identities=16% Similarity=0.205 Sum_probs=84.6
Q ss_pred CCCCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc----ccccccCC--------------cCceeeecCCcc-c
Q 039923 6 KRFWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL----ASLWKLKI--------------YDHLQLHLPKQF-C 66 (395)
Q Consensus 6 ~~~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~----~g~~~~~~--------------~~~~~~~~~~~~-~ 66 (395)
.+.+++||+||||||+|+++|..|++.|++|+|+|+.... |+...... ..++++..+... .
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v 114 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAV 114 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEE
Confidence 3456799999999999999999999999999999997421 22111000 111111111110 0
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCC-CCcEEEEEc--------c--EEEEeCEEEE
Q 039923 67 QLPYVPFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAA-MGHWRVKTH--------E--YEFMCRWLIV 135 (395)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~-~~~~~v~~~--------~--~~~~~d~lVl 135 (395)
.+.....+..+....++..|-+.+.+.+.+.|++++.+ ++..++.... ++.+.|++. + .+++++.||.
T Consensus 115 ~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIg 193 (450)
T PLN00093 115 DIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIG 193 (450)
T ss_pred EecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEE
Confidence 11100000111123689999999999999999998654 5777764321 244555542 2 5899999999
Q ss_pred eeCCCCC
Q 039923 136 ATGENEV 142 (395)
Q Consensus 136 AtG~~~~ 142 (395)
|+|..+.
T Consensus 194 ADG~~S~ 200 (450)
T PLN00093 194 ADGANSR 200 (450)
T ss_pred cCCcchH
Confidence 9996553
No 122
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.20 E-value=1e-09 Score=105.04 Aligned_cols=130 Identities=16% Similarity=0.092 Sum_probs=78.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc-cccCC-----cCcee--eec---------CCccccCCCCCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL-WKLKI-----YDHLQ--LHL---------PKQFCQLPYVPF 73 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~-~~~~~-----~~~~~--~~~---------~~~~~~~~~~~~ 73 (395)
+||+|||||++|+.+|..+++.|.+|+|+|+....+|. ..... +..+. +.. ......+.....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 68999999999999999999999999999987433221 10000 00000 000 000001111100
Q ss_pred ---CCCC--CCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCC
Q 039923 74 ---PREY--PAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENE 141 (395)
Q Consensus 74 ---~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~ 141 (395)
+..+ ....++..+...+++.+++. ++.++ ..+|..+...+++..+.|.+.+ ..+.++.||+|||.+.
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 1111 12456777888888888887 56665 4467777554222455566665 6899999999999653
No 123
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.20 E-value=1.9e-10 Score=106.90 Aligned_cols=139 Identities=22% Similarity=0.298 Sum_probs=91.5
Q ss_pred CeEEECCChHHHHHHHHH--HHcCCCEEEEecCCCc--cc--cccc-------------CCcCceeeecCCccccCCCCC
Q 039923 12 GPVIVGAGPSGLAAAACL--KERGVPSLIIEKESCL--AS--LWKL-------------KIYDHLQLHLPKQFCQLPYVP 72 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l--~~~g~~v~lie~~~~~--~g--~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 72 (395)
||+|||||+||+++|.+| ++.|.+|+|||+.... +. +|.. +.|++..+..+.......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~--- 77 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILI--- 77 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEc---
Confidence 799999999999999999 7779999999998766 32 2321 112222222111111100
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCCC
Q 039923 73 FPREYP-AYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIPG 150 (395)
Q Consensus 73 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~g 150 (395)
..+ ..+.+..|.+++.+.+.. +..+.++++|++++..+ ..+.+++++ ++++++.||.|+|..+. ...-.+
T Consensus 78 ---~~~Y~~i~~~~f~~~l~~~~~~-~~~~~~~~~V~~i~~~~--~~~~v~~~~g~~i~a~~VvDa~g~~~~--~~~~~~ 149 (374)
T PF05834_consen 78 ---DYPYCMIDRADFYEFLLERAAA-GGVIRLNARVTSIEETG--DGVLVVLADGRTIRARVVVDARGPSSP--KARPLG 149 (374)
T ss_pred ---ccceEEEEHHHHHHHHHHHhhh-CCeEEEccEEEEEEecC--ceEEEEECCCCEEEeeEEEECCCcccc--cccccc
Confidence 111 246788999999988884 44567789999999887 455566666 79999999999994322 222344
Q ss_pred CCCCcccEeec
Q 039923 151 ISEFRGRLLHT 161 (395)
Q Consensus 151 ~~~~~~~~~~~ 161 (395)
...|.|..+..
T Consensus 150 ~Q~f~G~~v~~ 160 (374)
T PF05834_consen 150 LQHFYGWEVET 160 (374)
T ss_pred cceeEEEEEec
Confidence 45555554444
No 124
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.8e-10 Score=93.85 Aligned_cols=130 Identities=20% Similarity=0.236 Sum_probs=89.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc-ccccC-CcCceeeecCCcc-ccCCCCCCCCCC--CCCCCHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS-LWKLK-IYDHLQLHLPKQF-CQLPYVPFPREY--PAYPSGQ 84 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~ 84 (395)
.-||+|+||||+|++||++|++.|.+|+|||++-.+|| .|--. .++.+.+..|... .+--..+|...- -...+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 46999999999999999999999999999999998876 66543 3445544444322 111112221111 1223566
Q ss_pred HHHHHHHHHHHHcCCccccCceEEEEEEcCCCC--cEEEE-----Ecc-----EEEEeCEEEEeeCC
Q 039923 85 QFITYMEAYANHFEIEPLLGQEVQWAKYDAAMG--HWRVK-----THE-----YEFMCRWLIVATGE 139 (395)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~--~~~v~-----~~~-----~~~~~d~lVlAtG~ 139 (395)
++...+...+-+.|.+++..+.|+.+-..++.+ ++.+. ..+ -.++++++|-|||+
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 778878888888899998899999887766421 11111 111 57899999999996
No 125
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.20 E-value=2.2e-10 Score=107.51 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=85.7
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc---cccc----------------CCcCceee-e-cCCccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS---LWKL----------------KIYDHLQL-H-LPKQFC 66 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g---~~~~----------------~~~~~~~~-~-~~~~~~ 66 (395)
.+.+||+|||||++|+++|+.|++.|++|+|+|+...... .|.. ...+.+.. . .+...+
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDM 82 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEE
Confidence 3568999999999999999999999999999999865421 1110 00000000 0 000000
Q ss_pred c--------CCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcC-CccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEE
Q 039923 67 Q--------LPYVPFPREYP---AYPSGQQFITYMEAYANHFE-IEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWL 133 (395)
Q Consensus 67 ~--------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~l 133 (395)
. +....+....+ ....+..+.+.+.+.+.+.+ ++++ +++|++++..+ +.+.+++.+ .++.+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~~~~g~~~~a~~v 159 (388)
T PRK07608 83 RVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP--DAATLTLADGQVLRADLV 159 (388)
T ss_pred EEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEEEEECCCCEEEeeEE
Confidence 0 00000001111 12457788888888888877 7777 88899988766 567788766 68999999
Q ss_pred EEeeCCCCC
Q 039923 134 IVATGENEV 142 (395)
Q Consensus 134 VlAtG~~~~ 142 (395)
|.|+|.++.
T Consensus 160 I~adG~~S~ 168 (388)
T PRK07608 160 VGADGAHSW 168 (388)
T ss_pred EEeCCCCch
Confidence 999997654
No 126
>PRK06185 hypothetical protein; Provisional
Probab=99.19 E-value=3.3e-10 Score=107.05 Aligned_cols=133 Identities=20% Similarity=0.300 Sum_probs=84.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc-----ccccc---------CCc-----------CceeeecCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA-----SLWKL---------KIY-----------DHLQLHLPK 63 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~-----g~~~~---------~~~-----------~~~~~~~~~ 63 (395)
+.+||+|||||++|+++|..|++.|++|+|+|+.+... ..+.. ..+ ..+......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 45899999999999999999999999999999975431 11110 001 111111111
Q ss_pred c-c--ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcE--EEEEcc--EEEEeCEEEE
Q 039923 64 Q-F--CQLPYVPFPREYPAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHW--RVKTHE--YEFMCRWLIV 135 (395)
Q Consensus 64 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~--~v~~~~--~~~~~d~lVl 135 (395)
. . ..+.....+..+...+++..+.+.+.+.+.+. +++++.+++|.++...++ ... .+...+ .+++++.||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~-~v~~v~~~~~~g~~~i~a~~vI~ 163 (407)
T PRK06185 85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGG-RVTGVRARTPDGPGEIRADLVVG 163 (407)
T ss_pred eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC-EEEEEEEEcCCCcEEEEeCEEEE
Confidence 1 0 01111111111223457788888888877765 789999999999987652 222 233333 4799999999
Q ss_pred eeCCCCC
Q 039923 136 ATGENEV 142 (395)
Q Consensus 136 AtG~~~~ 142 (395)
|+|.++.
T Consensus 164 AdG~~S~ 170 (407)
T PRK06185 164 ADGRHSR 170 (407)
T ss_pred CCCCchH
Confidence 9997663
No 127
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.18 E-value=8.3e-11 Score=108.93 Aligned_cols=131 Identities=19% Similarity=0.139 Sum_probs=82.0
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc----------------------CC--cCce--eeecC--
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL----------------------KI--YDHL--QLHLP-- 62 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~----------------------~~--~~~~--~~~~~-- 62 (395)
+||+|||||++|+++|..|++.|++|+|||+.+......+. .. .... .....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 68999999999999999999999999999998644211000 00 0000 00000
Q ss_pred ---------CccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEE--Ecc----EE
Q 039923 63 ---------KQFCQLPYVPFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVK--THE----YE 127 (395)
Q Consensus 63 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~--~~~----~~ 127 (395)
.....+. ............+..+.+.+.+.+++.+++++++++|..++.+. ..+.+. ... ++
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~ 158 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEET 158 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEEE
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCceeE
Confidence 0000000 00011112234688999999999999999999999999998877 443333 321 48
Q ss_pred EEeCEEEEeeCCCCCCC
Q 039923 128 FMCRWLIVATGENEVPV 144 (395)
Q Consensus 128 ~~~d~lVlAtG~~~~~~ 144 (395)
+++|.||.|.|.+|..+
T Consensus 159 i~adlvVgADG~~S~vR 175 (356)
T PF01494_consen 159 IEADLVVGADGAHSKVR 175 (356)
T ss_dssp EEESEEEE-SGTT-HHH
T ss_pred EEEeeeecccCcccchh
Confidence 99999999999766433
No 128
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.18 E-value=3.7e-10 Score=107.03 Aligned_cols=134 Identities=20% Similarity=0.248 Sum_probs=83.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc----c-c--ccc---------CCcCc----------eeeecC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA----S-L--WKL---------KIYDH----------LQLHLP 62 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~----g-~--~~~---------~~~~~----------~~~~~~ 62 (395)
..+||+|||||++|+++|..|++.|++|+|+|+.+... | . ... ..++. ..+...
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 35899999999999999999999999999999986432 1 0 000 00011 011000
Q ss_pred C--ccccCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEc--c--EEEEeCEEE
Q 039923 63 K--QFCQLPYVPFPRE-YPAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTH--E--YEFMCRWLI 134 (395)
Q Consensus 63 ~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~--~--~~~~~d~lV 134 (395)
. ....+........ .........+.+.+.+.+.+. +++++++++|++++.++ +.+++++. + .++++|+||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~~~~~~i~adlvI 174 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAATVTLEIEGKQQTLQSKLVV 174 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeEEEEccCCcceEEeeeEEE
Confidence 0 0011111101000 011122345777777766665 68899999999998776 55667664 2 479999999
Q ss_pred EeeCCCCCCC
Q 039923 135 VATGENEVPV 144 (395)
Q Consensus 135 lAtG~~~~~~ 144 (395)
.|+|.++..+
T Consensus 175 gADG~~S~vR 184 (415)
T PRK07364 175 AADGARSPIR 184 (415)
T ss_pred EeCCCCchhH
Confidence 9999766443
No 129
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.17 E-value=3.2e-10 Score=106.52 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=85.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc----cc---------------------ccccC------CcCcee
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL----AS---------------------LWKLK------IYDHLQ 58 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~----~g---------------------~~~~~------~~~~~~ 58 (395)
.+||+|||||++|+++|..|++.|++|+|||+.+.. ++ .|... .+..+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 489999999999999999999999999999997521 10 11000 000000
Q ss_pred ee-cCCccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEE
Q 039923 59 LH-LPKQFCQLPYVPFPR-EYPAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLI 134 (395)
Q Consensus 59 ~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lV 134 (395)
.. .......+....... .....+.+..+.+.+.+.+.+. +++++.+++|+.++..+ +.+.|++++ .++++|.||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD--DGWELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEEEEECCCCEEEeCEEE
Confidence 00 000000010000000 1112356778888888777776 88899999999998766 567777766 689999999
Q ss_pred EeeCCCCC
Q 039923 135 VATGENEV 142 (395)
Q Consensus 135 lAtG~~~~ 142 (395)
.|+|.++.
T Consensus 163 ~AdG~~S~ 170 (391)
T PRK08020 163 GADGANSQ 170 (391)
T ss_pred EeCCCCch
Confidence 99997664
No 130
>PRK07045 putative monooxygenase; Reviewed
Probab=99.17 E-value=4.2e-10 Score=105.57 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=86.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc---cc--cccC---------C-----------cCceeeecCCc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA---SL--WKLK---------I-----------YDHLQLHLPKQ 64 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~---g~--~~~~---------~-----------~~~~~~~~~~~ 64 (395)
.+||+||||||+|+++|..|++.|++|+|+|+.+... +. .... . ...+.......
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 4799999999999999999999999999999987541 10 0000 0 01111100010
Q ss_pred -cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH-cCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCC
Q 039923 65 -FCQLPYVPF-PREYPAYPSGQQFITYMEAYANH-FEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGEN 140 (395)
Q Consensus 65 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~ 140 (395)
...++.... ..++...+++.++.+.+.+.+.. .+++++++++|+.++..++...+.|++++ +++.+|+||.|+|..
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 011111000 01111224677888888777654 47889999999999987643334677765 789999999999976
Q ss_pred CCCC
Q 039923 141 EVPV 144 (395)
Q Consensus 141 ~~~~ 144 (395)
|..+
T Consensus 165 S~vR 168 (388)
T PRK07045 165 SMIR 168 (388)
T ss_pred hHHH
Confidence 6443
No 131
>PRK06753 hypothetical protein; Provisional
Probab=99.16 E-value=4.9e-10 Score=104.60 Aligned_cols=128 Identities=22% Similarity=0.214 Sum_probs=83.7
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc-----ccc-------------------CCcCceeeecCCcccc
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL-----WKL-------------------KIYDHLQLHLPKQFCQ 67 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~-----~~~-------------------~~~~~~~~~~~~~~~~ 67 (395)
+|+|||||++|+++|..|++.|++|+|+|+.+..... +.. ...+......+... .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 7999999999999999999999999999998754211 000 00111111111000 0
Q ss_pred CCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCC
Q 039923 68 LPYVPFPR-EYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 68 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~ 144 (395)
....++.. .....+++..+.+.+.+.+.. .+++++++|++++..+ +.+++++++ .++.+|.||.|.|.+|..+
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVKE--DAIFTGKEVTKIENET--DKVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCCC--ceEEECCEEEEEEecC--CcEEEEECCCCEEecCEEEECCCcchHHH
Confidence 00011111 112245788888888776553 4688899999998765 667788766 7899999999999766444
No 132
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.15 E-value=4.6e-10 Score=105.28 Aligned_cols=129 Identities=18% Similarity=0.184 Sum_probs=85.5
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc--------ccc--c---------CCcCce-----------eeec
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS--------LWK--L---------KIYDHL-----------QLHL 61 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g--------~~~--~---------~~~~~~-----------~~~~ 61 (395)
||+|||||++|+++|..|++.|++|+|+|+.+..+. ... . ..++.+ ....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999975321 000 0 000010 0000
Q ss_pred CCc--cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcC-CccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEe
Q 039923 62 PKQ--FCQLPYVPFP-REYPAYPSGQQFITYMEAYANHFE-IEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVA 136 (395)
Q Consensus 62 ~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlA 136 (395)
+.. ...++..... ......+.+..+.+.+.+.+.+.+ ++++.+++|+.++..+ +.+.+++.+ .++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeEEEECCCCEEEeeEEEEe
Confidence 000 0000000000 001123567888888888888887 8999999999998876 667777766 68999999999
Q ss_pred eCCCCC
Q 039923 137 TGENEV 142 (395)
Q Consensus 137 tG~~~~ 142 (395)
+|.++.
T Consensus 159 dG~~S~ 164 (385)
T TIGR01988 159 DGANSK 164 (385)
T ss_pred CCCCCH
Confidence 997654
No 133
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.15 E-value=4.9e-10 Score=105.17 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=84.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc------------------cccc-----CCcCceeeecCCc-c
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS------------------LWKL-----KIYDHLQLHLPKQ-F 65 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g------------------~~~~-----~~~~~~~~~~~~~-~ 65 (395)
.+||+|||||++|+++|..|++.|++|+|||+.+.... .|.. ..+..+.+..... .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 37999999999999999999999999999999864321 1110 0011111111110 0
Q ss_pred c-----cCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeC
Q 039923 66 C-----QLPYVPFP-REYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATG 138 (395)
Q Consensus 66 ~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG 138 (395)
. .+...... ..+...+++..+.+.+.+.+.+++...+++++|.+++..+ +.+++++++ .++++|.||.|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~~vI~AdG 164 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE--DEVTVTLADGTTLSARLVVGADG 164 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEEEEECCCCEEEEeEEEEecC
Confidence 0 00000000 0111235677888888888877653337899999998766 667788766 6899999999999
Q ss_pred CCCC
Q 039923 139 ENEV 142 (395)
Q Consensus 139 ~~~~ 142 (395)
.++.
T Consensus 165 ~~S~ 168 (388)
T PRK07494 165 RNSP 168 (388)
T ss_pred CCch
Confidence 7653
No 134
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.15 E-value=9.6e-10 Score=107.64 Aligned_cols=134 Identities=20% Similarity=0.296 Sum_probs=86.5
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc--------------CCcC----------ceeee-cC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL--------------KIYD----------HLQLH-LP 62 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~--------------~~~~----------~~~~~-~~ 62 (395)
...+||+||||||+|+++|..|.+.|++|+|||+.+.+....+. ...+ ..... ..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence 35689999999999999999999999999999999754221100 0000 00000 00
Q ss_pred CccccCCCCCCC-CCCCC--CCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEc--c--EEEEeCEEE
Q 039923 63 KQFCQLPYVPFP-REYPA--YPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTH--E--YEFMCRWLI 134 (395)
Q Consensus 63 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~--~--~~~~~d~lV 134 (395)
.....++..+.. ..++. ...+..+..++.+.+.+. +++++++++|++++.++ ..++++.. + .++++|+||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~~~i~ad~vV 178 (547)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPDGPYTLEADWVI 178 (547)
T ss_pred CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCCCcEEEEeCEEE
Confidence 111111111100 11111 246778888888888776 68899999999998876 55555543 2 479999999
Q ss_pred EeeCCCCCC
Q 039923 135 VATGENEVP 143 (395)
Q Consensus 135 lAtG~~~~~ 143 (395)
.|+|.++..
T Consensus 179 gADG~~S~v 187 (547)
T PRK08132 179 ACDGARSPL 187 (547)
T ss_pred ECCCCCcHH
Confidence 999976543
No 135
>PRK07588 hypothetical protein; Provisional
Probab=99.15 E-value=4.3e-10 Score=105.64 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=84.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc--c-c---cccC------------------CcCceeeecCC--c
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA--S-L---WKLK------------------IYDHLQLHLPK--Q 64 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~--g-~---~~~~------------------~~~~~~~~~~~--~ 64 (395)
.||+|||||++|+++|..|++.|++|+|+|+.+... | . |... ....+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 379999999999999999999999999999986432 1 1 1110 01111111000 0
Q ss_pred cccCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCC
Q 039923 65 FCQLPYVPFPREY---PAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGEN 140 (395)
Q Consensus 65 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~ 140 (395)
...++...+.... .....+.++...+.+.+. .+++++++++|++++..+ +.+++++++ +++++|.||.|+|.+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHR--DGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEEEEECCCCEEEeCEEEECCCCC
Confidence 1111111111111 113467777777766443 378899999999998876 667788776 678999999999987
Q ss_pred CCCC
Q 039923 141 EVPV 144 (395)
Q Consensus 141 ~~~~ 144 (395)
|..+
T Consensus 158 S~vR 161 (391)
T PRK07588 158 SHVR 161 (391)
T ss_pred ccch
Confidence 6554
No 136
>PLN02697 lycopene epsilon cyclase
Probab=99.15 E-value=5.6e-10 Score=106.90 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=83.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc---cccccCCcCceee------ecCCccccCCCCCCC-CCC-C
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA---SLWKLKIYDHLQL------HLPKQFCQLPYVPFP-REY-P 78 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~---g~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~-~ 78 (395)
++||+||||||+|+++|..|++.|++|+++|+..... |+|... ...+.+ ..+.....++..... ... -
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 4899999999999999999999999999999864332 344221 000000 000000001110000 010 1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEE-EEEc-cEEEEeCEEEEeeCCCC
Q 039923 79 AYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWR-VKTH-EYEFMCRWLIVATGENE 141 (395)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~-v~~~-~~~~~~d~lVlAtG~~~ 141 (395)
..+.+..+.+.+.+.+.+.++++ ++++|+.++..+ +.+. ++.. +.++.++.||+|+|.++
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 23678889999999888889887 678899988765 3333 3333 47899999999999866
No 137
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.14 E-value=4.6e-10 Score=92.07 Aligned_cols=128 Identities=19% Similarity=0.254 Sum_probs=79.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc-ccccC-CcCceeeecCCccc-c---CCCCCCCCCCCCCCCH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS-LWKLK-IYDHLQLHLPKQFC-Q---LPYVPFPREYPAYPSG 83 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g-~~~~~-~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 83 (395)
.+||+||||||+|++||+.|++.|++|++||++..+|| .|.-. .++.+.++.+.... + .+..++.+. -...+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g-~~v~d~ 95 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDG-YYVADS 95 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSE-EEES-H
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCe-EEEEcH
Confidence 48999999999999999999999999999999998886 66543 45555555543221 1 111111111 123467
Q ss_pred HHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcE---EEEEc----------cEEEEeCEEEEeeCC
Q 039923 84 QQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHW---RVKTH----------EYEFMCRWLIVATGE 139 (395)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~---~v~~~----------~~~~~~d~lVlAtG~ 139 (395)
.++...+...+-+.|++++..+.|+.+-..++ ..+ .+... --.+++++||-|||+
T Consensus 96 ~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 78888888777778999988899988876663 221 11111 158999999999995
No 138
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.14 E-value=7.1e-10 Score=104.07 Aligned_cols=133 Identities=15% Similarity=0.142 Sum_probs=81.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc------c-cccccC-------------------CcCceeeecCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL------A-SLWKLK-------------------IYDHLQLHLPK 63 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~------~-g~~~~~-------------------~~~~~~~~~~~ 63 (395)
.+||+||||||+|+++|..|++.|++|+|+|+.+.. + +..... ....+.+....
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 579999999999999999999999999999998631 1 111000 01111111111
Q ss_pred ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCccccCceEEEEEE-cCCCCcEEEEE--cc--EEEEeCEEEEee
Q 039923 64 QFCQLPYVPFPREYP-AYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKY-DAAMGHWRVKT--HE--YEFMCRWLIVAT 137 (395)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~-~~~~~~~~v~~--~~--~~~~~d~lVlAt 137 (395)
....++......... ....+..+.+.+.+.+.+.++++++++++++++. ++ ....|+. ++ .++++|+||.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~--~~~~V~~~~~G~~~~i~ad~vVgAD 159 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDS--DRPYVTYEKDGEEHRLDCDFIAGCD 159 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCC--CceEEEEEcCCeEEEEEeCEEEECC
Confidence 111111110000000 1123556666666666777899999999998876 33 3334554 33 479999999999
Q ss_pred CCCCCCC
Q 039923 138 GENEVPV 144 (395)
Q Consensus 138 G~~~~~~ 144 (395)
|..|..+
T Consensus 160 G~~S~vR 166 (392)
T PRK08243 160 GFHGVSR 166 (392)
T ss_pred CCCCchh
Confidence 9876554
No 139
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.14 E-value=2.9e-10 Score=106.99 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=86.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc------ccc--------CCcC----------ceeeec---C
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL------WKL--------KIYD----------HLQLHL---P 62 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~------~~~--------~~~~----------~~~~~~---~ 62 (395)
..||+|||||++|+++|..|++.|++|+|+|+.+.++.. +.. ...+ ...... .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 368999999999999999999999999999998754311 000 0000 000000 0
Q ss_pred CccccCCCCC-CC--CCCC-CCCCHHHHHHHHHHHHHHcC-CccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEe
Q 039923 63 KQFCQLPYVP-FP--REYP-AYPSGQQFITYMEAYANHFE-IEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVA 136 (395)
Q Consensus 63 ~~~~~~~~~~-~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlA 136 (395)
......+... +. ...+ ..+.+.++.+.+.+.+.+.+ ++++++++|++++..+ +.+.+++.+ .++.+|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVTVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceEEEEcCCCEEecCEEEEC
Confidence 0000000000 00 0001 13467888888888877764 8899999999998765 567777765 68999999999
Q ss_pred eCCCCCCC
Q 039923 137 TGENEVPV 144 (395)
Q Consensus 137 tG~~~~~~ 144 (395)
+|.++..+
T Consensus 162 dG~~S~~r 169 (396)
T PRK08163 162 DGVKSVVR 169 (396)
T ss_pred CCcChHHH
Confidence 99766543
No 140
>PRK09126 hypothetical protein; Provisional
Probab=99.14 E-value=6.4e-10 Score=104.53 Aligned_cols=131 Identities=19% Similarity=0.195 Sum_probs=80.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc--------cc---cccc--------CCcCce-----------ee
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL--------AS---LWKL--------KIYDHL-----------QL 59 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~--------~g---~~~~--------~~~~~~-----------~~ 59 (395)
.+||+||||||+|+++|..|++.|++|+|+|+.... |. +... ..++.+ .+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 479999999999999999999999999999998642 11 0000 000000 00
Q ss_pred ecCCc--cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHH-HcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEE
Q 039923 60 HLPKQ--FCQLPYVPF-PREYPAYPSGQQFITYMEAYAN-HFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLI 134 (395)
Q Consensus 60 ~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lV 134 (395)
..... ...++.... ........++..+.+.+.+.+. ..+++++++++|++++..+ +.+.|++++ .++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQVTLANGRRLTARLLV 160 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEEEEEcCCCEEEeCEEE
Confidence 00000 000100000 0011112345556655554443 4589999999999998766 566777665 789999999
Q ss_pred EeeCCCCC
Q 039923 135 VATGENEV 142 (395)
Q Consensus 135 lAtG~~~~ 142 (395)
.|+|..+.
T Consensus 161 ~AdG~~S~ 168 (392)
T PRK09126 161 AADSRFSA 168 (392)
T ss_pred EeCCCCch
Confidence 99996543
No 141
>PRK11445 putative oxidoreductase; Provisional
Probab=99.13 E-value=8.2e-10 Score=101.91 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=82.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc---------ccccccCCcC---ceeeecCCcc-----------c
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL---------ASLWKLKIYD---HLQLHLPKQF-----------C 66 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~---------~g~~~~~~~~---~~~~~~~~~~-----------~ 66 (395)
++||+||||||+|+++|..|++. ++|+++|+.+.. |+........ .+-+..+... .
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 47999999999999999999999 999999998642 2211110000 0000000000 0
Q ss_pred cCCC-CCCCCCCCC-CCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE-cc---EEEEeCEEEEeeCCC
Q 039923 67 QLPY-VPFPREYPA-YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT-HE---YEFMCRWLIVATGEN 140 (395)
Q Consensus 67 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~-~~---~~~~~d~lVlAtG~~ 140 (395)
.... ......... ..++.++.+.+.+.. ..+++++++++|+.++..+ +.|.++. ++ .++++|+||.|+|..
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~i~~~~--~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVEVYHNSLCRKIWRED--DGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHH-hcCCEEEcCCEEEEEEEcC--CEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 0000 000001111 367888888887754 5578999999999998776 6677765 23 379999999999975
Q ss_pred CCC
Q 039923 141 EVP 143 (395)
Q Consensus 141 ~~~ 143 (395)
+..
T Consensus 157 S~v 159 (351)
T PRK11445 157 SMV 159 (351)
T ss_pred cHH
Confidence 543
No 142
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.12 E-value=6.6e-10 Score=104.09 Aligned_cols=127 Identities=21% Similarity=0.309 Sum_probs=85.7
Q ss_pred EEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCcee-----------eecCC--c-----cccCC------
Q 039923 14 VIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQ-----------LHLPK--Q-----FCQLP------ 69 (395)
Q Consensus 14 vIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~-----------~~~~~--~-----~~~~~------ 69 (395)
+|||||++|++||..|++.|.+|+|+|+.+.+|+.+....-..+. ...+. . +..+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999998887633211000000 00000 0 00000
Q ss_pred -----CCCC-----CCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCC
Q 039923 70 -----YVPF-----PREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGE 139 (395)
Q Consensus 70 -----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~ 139 (395)
..++ ...++.......+.+.+.+.+++.+++++.+++|+.++..+ ..|.+++++.++.+|.||+|+|.
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~~v~~~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGFGVETSGGEYEADKVILATGG 158 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeEEEEECCcEEEcCEEEECCCC
Confidence 0000 00111222457888899999999999999999999997765 56778776678999999999997
Q ss_pred CCC
Q 039923 140 NEV 142 (395)
Q Consensus 140 ~~~ 142 (395)
.+.
T Consensus 159 ~s~ 161 (400)
T TIGR00275 159 LSY 161 (400)
T ss_pred ccc
Confidence 553
No 143
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.12 E-value=5.4e-10 Score=106.29 Aligned_cols=134 Identities=17% Similarity=0.191 Sum_probs=85.0
Q ss_pred CCeEEECCChHHHHHHHHHHH----cCCCEEEEecCC--Ccc--------ccccc----------------CCcCc----
Q 039923 11 PGPVIVGAGPSGLAAAACLKE----RGVPSLIIEKES--CLA--------SLWKL----------------KIYDH---- 56 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~----~g~~v~lie~~~--~~~--------g~~~~----------------~~~~~---- 56 (395)
+||+||||||+|+++|..|++ .|++|+|||+.+ ... +.+.. ..++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 689999999999999999998 799999999943 211 00000 01111
Q ss_pred -------eeeecCCc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC---CccccCceEEEEEEc-----CCCCcE
Q 039923 57 -------LQLHLPKQ--FCQLPYVPFPREYPAYPSGQQFITYMEAYANHFE---IEPLLGQEVQWAKYD-----AAMGHW 119 (395)
Q Consensus 57 -------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~V~~v~~~-----~~~~~~ 119 (395)
+....... ...++...........+++..+.+.+.+.+.+.+ ++++++++|..++.. ++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 11100000 0111111000011123567888888888877765 889999999999753 223567
Q ss_pred EEEEcc-EEEEeCEEEEeeCCCCCCC
Q 039923 120 RVKTHE-YEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 120 ~v~~~~-~~~~~d~lVlAtG~~~~~~ 144 (395)
++++.+ +++++|+||.|.|..|..+
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCChhH
Confidence 777766 7999999999999766544
No 144
>PRK06126 hypothetical protein; Provisional
Probab=99.12 E-value=1.7e-09 Score=106.01 Aligned_cols=134 Identities=21% Similarity=0.217 Sum_probs=84.9
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccC--------------CcCce--------------ee
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK--------------IYDHL--------------QL 59 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~--------------~~~~~--------------~~ 59 (395)
+..++|+||||||+|+++|..|+++|++|+|||+.......-+.. ..+.+ ..
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence 345899999999999999999999999999999986432110000 00000 00
Q ss_pred e--cCCccccCCCCC------C--------CC-CCCCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEE
Q 039923 60 H--LPKQFCQLPYVP------F--------PR-EYPAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRV 121 (395)
Q Consensus 60 ~--~~~~~~~~~~~~------~--------~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v 121 (395)
. .......+.... + .. ......++..+...+.+.+.+. +++++++++|++++.++ +.+++
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v 162 (545)
T PRK06126 85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTA 162 (545)
T ss_pred ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEE
Confidence 0 000000000000 0 00 0012356777888888888765 78999999999998876 44445
Q ss_pred EEc----c--EEEEeCEEEEeeCCCCCC
Q 039923 122 KTH----E--YEFMCRWLIVATGENEVP 143 (395)
Q Consensus 122 ~~~----~--~~~~~d~lVlAtG~~~~~ 143 (395)
++. + .++.+|+||.|+|.+|..
T Consensus 163 ~~~~~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 163 TVEDLDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred EEEECCCCcEEEEEEEEEEecCCcchHH
Confidence 442 2 479999999999986643
No 145
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.12 E-value=1e-09 Score=102.92 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=81.1
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc----cccccC--------------CcCceeeecCCccc-cCCCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA----SLWKLK--------------IYDHLQLHLPKQFC-QLPYV 71 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~----g~~~~~--------------~~~~~~~~~~~~~~-~~~~~ 71 (395)
+||+||||||+|+++|+.|++.|++|+|+|+....+ +.+... ...++++..|.... .+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 489999999999999999999999999999975432 111100 11122222221110 00100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcC-CCCcEEEEEc--------c--EEEEeCEEEEeeCCC
Q 039923 72 PFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDA-AMGHWRVKTH--------E--YEFMCRWLIVATGEN 140 (395)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~-~~~~~~v~~~--------~--~~~~~d~lVlAtG~~ 140 (395)
.....+....++..|-+++.+.+.+.|++++.+ ++..++... ..+.+.|+.. + .++++++||.|+|..
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGAN 159 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcc
Confidence 001111123688999999999999999998766 466664321 2244555431 2 579999999999965
Q ss_pred C
Q 039923 141 E 141 (395)
Q Consensus 141 ~ 141 (395)
+
T Consensus 160 S 160 (398)
T TIGR02028 160 S 160 (398)
T ss_pred h
Confidence 4
No 146
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.12 E-value=5.7e-10 Score=104.53 Aligned_cols=129 Identities=19% Similarity=0.154 Sum_probs=84.2
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCccc---------cccc---------CCcCce----------eeecC
Q 039923 12 GPVIVGAGPSGLAAAACLKERG-VPSLIIEKESCLAS---------LWKL---------KIYDHL----------QLHLP 62 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g-~~v~lie~~~~~~g---------~~~~---------~~~~~~----------~~~~~ 62 (395)
||+||||||+|+++|..|++.| ++|+|+|+.....- .... ..++.+ .+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999853311 0000 000000 00000
Q ss_pred Cc--cccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEee
Q 039923 63 KQ--FCQLPYVPFPREYP-AYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVAT 137 (395)
Q Consensus 63 ~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAt 137 (395)
.. ...+....+..... ....+.++.+.+.+.+.+. +++++++++|++++..+ +.+++++.+ .++.+|.||.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEEECCCCEEEeeEEEEec
Confidence 00 00000000000001 1256788888888888874 89999999999998776 567777765 679999999999
Q ss_pred CCCCC
Q 039923 138 GENEV 142 (395)
Q Consensus 138 G~~~~ 142 (395)
|.++.
T Consensus 159 G~~S~ 163 (382)
T TIGR01984 159 GANSK 163 (382)
T ss_pred CCChH
Confidence 97653
No 147
>PRK05868 hypothetical protein; Validated
Probab=99.10 E-value=1.6e-09 Score=100.67 Aligned_cols=132 Identities=15% Similarity=0.074 Sum_probs=82.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc---cc--ccC-------------------CcCceeeecCCc-
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS---LW--KLK-------------------IYDHLQLHLPKQ- 64 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g---~~--~~~-------------------~~~~~~~~~~~~- 64 (395)
|+||+|||||++|+++|..|++.|++|+|||+.+.... .. ... .........+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 46899999999999999999999999999999864421 00 000 011111111100
Q ss_pred -cccCCC-CCCCCCC---CCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeC
Q 039923 65 -FCQLPY-VPFPREY---PAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATG 138 (395)
Q Consensus 65 -~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG 138 (395)
...... .+....+ .....+.++.+.+.... ..+++++++++|+.++.++ +.+++++.+ .++.+|.||.|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~--~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDG--DSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecC--CeEEEEECCCCeEEeCEEEECCC
Confidence 000000 0000000 01123556666554432 3478899999999998765 667788776 7899999999999
Q ss_pred CCCCCC
Q 039923 139 ENEVPV 144 (395)
Q Consensus 139 ~~~~~~ 144 (395)
.+|..+
T Consensus 158 ~~S~vR 163 (372)
T PRK05868 158 LHSNVR 163 (372)
T ss_pred CCchHH
Confidence 876554
No 148
>PRK07236 hypothetical protein; Provisional
Probab=99.09 E-value=2.4e-09 Score=100.35 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=78.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc----cc-c-cccCC---cCceeee------cCC---ccccCCCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL----AS-L-WKLKI---YDHLQLH------LPK---QFCQLPYV 71 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~----~g-~-~~~~~---~~~~~~~------~~~---~~~~~~~~ 71 (395)
..+|+|||||++|+++|..|++.|++|+|+|+.+.. |+ . +.... ...+-+. .+. .+......
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 478999999999999999999999999999998632 11 1 01000 0000000 000 00000000
Q ss_pred CCC-CCCC-CCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCC
Q 039923 72 PFP-REYP-AYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 72 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~ 144 (395)
... .... .......+.+.+.+.+ .+.+++++++|++++..+ ..+++++.+ +++++|.||.|.|.+|..+
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDG--DRVTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEEEEECCCCEEEeCEEEECCCCCchHH
Confidence 000 0000 1123444544443322 135689999999998876 667788776 7899999999999876554
No 149
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.08 E-value=4.8e-10 Score=103.92 Aligned_cols=61 Identities=23% Similarity=0.247 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEE-EEEccEEEEeCEEEEeeCCCCCC
Q 039923 81 PSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWR-VKTHEYEFMCRWLIVATGENEVP 143 (395)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~-v~~~~~~~~~d~lVlAtG~~~~~ 143 (395)
.+...+.+.+...+.+.|++++.+++|++++.++ +.|+ |.+++..+.+|.||+|+|.++..
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDGEIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTEEEEECEEEE--GGGHHH
T ss_pred ccccchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccccccccceeEeccccccee
Confidence 4467889999999999999999999999999988 7787 88888679999999999975433
No 150
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.07 E-value=1.7e-09 Score=101.22 Aligned_cols=133 Identities=14% Similarity=0.168 Sum_probs=78.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc------cc-cccc---------CC----------cCceeeecCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL------AS-LWKL---------KI----------YDHLQLHLPK 63 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~------~g-~~~~---------~~----------~~~~~~~~~~ 63 (395)
.+||+|||||++|+++|..|++.|++|+|||+.+.. +. .... .. ...+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 579999999999999999999999999999998741 11 1110 00 1111111111
Q ss_pred ccccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCccccCceEEEEEE-cCCCCcEEEEE--cc--EEEEeCEEEEee
Q 039923 64 QFCQLPYVPFPREYPA-YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKY-DAAMGHWRVKT--HE--YEFMCRWLIVAT 137 (395)
Q Consensus 64 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~-~~~~~~~~v~~--~~--~~~~~d~lVlAt 137 (395)
.....+.......... ...+..+...+.+.+.+.++.++++.++..+.. ++ ....|++ ++ .++++|.||.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~--~~~~V~~~~~g~~~~i~adlvIGAD 159 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAG--DRPYVTFERDGERHRLDCDFIAGCD 159 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC--CccEEEEEECCeEEEEEeCEEEECC
Confidence 1111111000000000 113455666666666777888888887776644 33 2233544 33 379999999999
Q ss_pred CCCCCCC
Q 039923 138 GENEVPV 144 (395)
Q Consensus 138 G~~~~~~ 144 (395)
|.+|..+
T Consensus 160 G~~S~VR 166 (390)
T TIGR02360 160 GFHGVSR 166 (390)
T ss_pred CCchhhH
Confidence 9877544
No 151
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.07 E-value=1.7e-09 Score=101.64 Aligned_cols=58 Identities=24% Similarity=0.113 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCC
Q 039923 82 SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENE 141 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~ 141 (395)
....+.+.+.+.+.+.|++++.+++|..++..+ +.+.|.+++.++.+|.||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGVVVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeEEEEECCCEEEeCEEEECCCcch
Confidence 456777788888888899999999999998765 5577777777899999999999865
No 152
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.06 E-value=2e-09 Score=101.30 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=81.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCc-----c------ccccc--------CCcCcee---------
Q 039923 10 TPGPVIVGAGPSGLAAAACLKER---GVPSLIIEKESCL-----A------SLWKL--------KIYDHLQ--------- 58 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~---g~~v~lie~~~~~-----~------g~~~~--------~~~~~~~--------- 58 (395)
.+||+|||||++|+++|..|+++ |++|+|+|+.... + +++.. ..++.+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 47999999999999999999998 9999999995211 0 00000 0111110
Q ss_pred -eecCCccc--cCCCCCCCCCC-CCCCCHHHHHHHHHHHHHH-cCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCE
Q 039923 59 -LHLPKQFC--QLPYVPFPREY-PAYPSGQQFITYMEAYANH-FEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRW 132 (395)
Q Consensus 59 -~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~ 132 (395)
........ .+....+.... .....+..+.+.+.+.+.+ .+++++++++|++++..+ +.+.+++++ .++.+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~~ 160 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVRVTLDDGETLTGRL 160 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEEEEECCCCEEEeCE
Confidence 00000000 00000000000 1124566677777776655 478899999999998765 667787766 6899999
Q ss_pred EEEeeCCCCC
Q 039923 133 LIVATGENEV 142 (395)
Q Consensus 133 lVlAtG~~~~ 142 (395)
||.|+|.++.
T Consensus 161 vI~AdG~~S~ 170 (395)
T PRK05732 161 LVAADGSHSA 170 (395)
T ss_pred EEEecCCChh
Confidence 9999997653
No 153
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.06 E-value=1.8e-09 Score=101.80 Aligned_cols=132 Identities=15% Similarity=0.180 Sum_probs=81.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecC-C--Cccc------c-ccc---------CCcCce-----------ee
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKE-S--CLAS------L-WKL---------KIYDHL-----------QL 59 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~-~--~~~g------~-~~~---------~~~~~~-----------~~ 59 (395)
.+||+||||||+|+++|..|++.|++|+|+|+. + .++. . ... ..++.+ .+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 379999999999999999999999999999996 2 1110 0 000 011111 11
Q ss_pred ecCCcc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEE
Q 039923 60 HLPKQF--CQLPYVPFPR-EYPAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLI 134 (395)
Q Consensus 60 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lV 134 (395)
...... ..++...... .+...+.+..+...+.+.+.+. +++++++++|++++..+ ..+.|++++ +++++|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEEEEECCCCEEEeCEEE
Confidence 101000 0000000000 0011234566666666666554 68899999999998776 556677766 789999999
Q ss_pred EeeCCCCCC
Q 039923 135 VATGENEVP 143 (395)
Q Consensus 135 lAtG~~~~~ 143 (395)
.|+|..+..
T Consensus 162 gADG~~S~v 170 (405)
T PRK08850 162 GADGANSWL 170 (405)
T ss_pred EeCCCCChh
Confidence 999975543
No 154
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.05 E-value=2e-09 Score=100.71 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=81.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc----c---c-----cccc--------CCcCceeee--cC-----
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL----A---S-----LWKL--------KIYDHLQLH--LP----- 62 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~----~---g-----~~~~--------~~~~~~~~~--~~----- 62 (395)
.+||+|||||++|+++|..|++.|++|+|||+.+.. . + ++.. ..++.+.-. .+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 379999999999999999999999999999987411 0 0 0000 011111000 00
Q ss_pred -----CccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEE
Q 039923 63 -----KQFCQLPYVPFPR-EYPAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLI 134 (395)
Q Consensus 63 -----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lV 134 (395)
.....++...... .+.....+..+...+.+.+.+. +++++.+++|++++.++ ..+++++.+ .++++|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~~v~~~~g~~~~~~lvI 160 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGNRVTLESGAEIEAKWVI 160 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeEEEEECCCCEEEeeEEE
Confidence 0000011000000 0011233445555555555443 68899999999998876 566788876 799999999
Q ss_pred EeeCCCCCCC
Q 039923 135 VATGENEVPV 144 (395)
Q Consensus 135 lAtG~~~~~~ 144 (395)
.|+|..|..+
T Consensus 161 gADG~~S~vR 170 (384)
T PRK08849 161 GADGANSQVR 170 (384)
T ss_pred EecCCCchhH
Confidence 9999766544
No 155
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.05 E-value=2.1e-09 Score=101.16 Aligned_cols=132 Identities=23% Similarity=0.237 Sum_probs=84.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc----c--ccc--------CCcCce----------eeecCCc--
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS----L--WKL--------KIYDHL----------QLHLPKQ-- 64 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g----~--~~~--------~~~~~~----------~~~~~~~-- 64 (395)
.+|+|||||++|+++|..|++.|++|+|+|+.+.+.. . +.. ..++.+ .......
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 6899999999999999999999999999999865321 0 000 000000 0000000
Q ss_pred -cccCCCCCCC-C--CCCC-CCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEE---cc-EEEEeCEEE
Q 039923 65 -FCQLPYVPFP-R--EYPA-YPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKT---HE-YEFMCRWLI 134 (395)
Q Consensus 65 -~~~~~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~---~~-~~~~~d~lV 134 (395)
.......... . ..+. ...+.++.+.+.+.+.+. +++++++++|++++..+ +.+.+++ ++ +++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceEEEEEeCCCCcEEecCEEE
Confidence 0000000000 0 0011 246788888888877664 78899999999998765 5566665 22 579999999
Q ss_pred EeeCCCCCCC
Q 039923 135 VATGENEVPV 144 (395)
Q Consensus 135 lAtG~~~~~~ 144 (395)
.|.|.+|..+
T Consensus 161 gADG~~S~vR 170 (400)
T PRK06475 161 ACDGVWSMLR 170 (400)
T ss_pred ECCCccHhHH
Confidence 9999876554
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.03 E-value=3.4e-09 Score=75.09 Aligned_cols=78 Identities=22% Similarity=0.229 Sum_probs=65.2
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITYME 91 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (395)
+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. .....++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~---------------------------------~~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL---------------------------------PGFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS---------------------------------TTSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh---------------------------------hhcCHHHHHHHH
Confidence 48999999999999999999999999999987432 112367888888
Q ss_pred HHHHHcCCccccCceEEEEEEcCCCCcEEEEEc
Q 039923 92 AYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH 124 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~ 124 (395)
+.+++.++++++++.+.+++.+++ .++|+++
T Consensus 48 ~~l~~~gV~v~~~~~v~~i~~~~~--~~~V~~~ 78 (80)
T PF00070_consen 48 EYLRKRGVEVHTNTKVKEIEKDGD--GVEVTLE 78 (80)
T ss_dssp HHHHHTTEEEEESEEEEEEEEETT--SEEEEEE
T ss_pred HHHHHCCCEEEeCCEEEEEEEeCC--EEEEEEe
Confidence 899999999999999999999874 3556654
No 157
>PRK06996 hypothetical protein; Provisional
Probab=99.03 E-value=3.9e-09 Score=99.24 Aligned_cols=130 Identities=18% Similarity=0.158 Sum_probs=85.0
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcC----CCEEEEecCCCcc---------------------cccccCCc--Cceeee
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERG----VPSLIIEKESCLA---------------------SLWKLKIY--DHLQLH 60 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g----~~v~lie~~~~~~---------------------g~~~~~~~--~~~~~~ 60 (395)
.+.+||+||||||+|+++|..|++.| ++|+|+|+..... |.|..... ....+.
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~ 88 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVS 88 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEe
Confidence 45589999999999999999999987 4699999974211 01111000 111111
Q ss_pred cCCcc--ccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc----EEEEeCEE
Q 039923 61 LPKQF--CQLPYVPFPREY-PAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE----YEFMCRWL 133 (395)
Q Consensus 61 ~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~----~~~~~d~l 133 (395)
..... ..+....+.... ...+++..+.+.+.+.+.+.+++++.+++++.++... ..+++++.+ +++++|+|
T Consensus 89 ~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~--~~v~v~~~~~~g~~~i~a~lv 166 (398)
T PRK06996 89 QRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA--DGVTLALGTPQGARTLRARIA 166 (398)
T ss_pred cCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC--CeEEEEECCCCcceEEeeeEE
Confidence 00000 001000111111 1235678899999999998899999999999997766 667777653 58999999
Q ss_pred EEeeCC
Q 039923 134 IVATGE 139 (395)
Q Consensus 134 VlAtG~ 139 (395)
|.|+|.
T Consensus 167 IgADG~ 172 (398)
T PRK06996 167 VQAEGG 172 (398)
T ss_pred EECCCC
Confidence 999994
No 158
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.02 E-value=4.3e-09 Score=98.52 Aligned_cols=59 Identities=15% Similarity=0.070 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCC
Q 039923 82 SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEV 142 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~ 142 (395)
....+...+.+.+.+.+++++.+++|++++..+ +.+.|.+++.++.+|.||+|+|.++.
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~v~~~~~~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATVRDGTKVVEIEPTE--LLVTVKTTKGSYQANKLVVTAGAWTS 201 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEEEEeCCCEEEeCEEEEecCcchH
Confidence 445677778888888899999999999998765 66777777778999999999997643
No 159
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.02 E-value=4.6e-09 Score=98.21 Aligned_cols=63 Identities=19% Similarity=0.115 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCC
Q 039923 81 PSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~ 145 (395)
+....+...+.+.+.+.+++++.+++|++++..+ +.+.+++++.++.+|.||+|+|.++....
T Consensus 146 v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~~a~~vV~A~G~~~~~l~ 208 (376)
T PRK11259 146 LRPELAIKAHLRLAREAGAELLFNEPVTAIEADG--DGVTVTTADGTYEAKKLVVSAGAWVKDLL 208 (376)
T ss_pred EcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeEEEEeCCCEEEeeEEEEecCcchhhhc
Confidence 3445566666677778899999999999998866 56778877778999999999998655433
No 160
>PRK07538 hypothetical protein; Provisional
Probab=98.99 E-value=2.1e-08 Score=94.81 Aligned_cols=131 Identities=18% Similarity=0.136 Sum_probs=81.0
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc----c--ccc--------CCc----------CceeeecCC--cc
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS----L--WKL--------KIY----------DHLQLHLPK--QF 65 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g----~--~~~--------~~~----------~~~~~~~~~--~~ 65 (395)
||+|||||++|+++|..|++.|++|+|||+.+.+.. . +.. ..+ .......+. ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 799999999999999999999999999999864321 0 000 000 011110000 00
Q ss_pred ccCCCCC-CCCCCC-CCCCHHHHHHHHHHHHHH-cCC-ccccCceEEEEEEcCCCCcEEEEEcc------EEEEeCEEEE
Q 039923 66 CQLPYVP-FPREYP-AYPSGQQFITYMEAYANH-FEI-EPLLGQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIV 135 (395)
Q Consensus 66 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~V~~v~~~~~~~~~~v~~~~------~~~~~d~lVl 135 (395)
...+... ....++ ..+.+..+.+.+.+.+.+ .+. .++++++|++++..+ ..+.+.+.+ .++++|.||.
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~--~~~~~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA--DVTVVFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC--CceEEEEeccCCCccceEEeeEEEE
Confidence 0000000 000111 125788888888777655 464 589999999998776 333344422 5899999999
Q ss_pred eeCCCCCCC
Q 039923 136 ATGENEVPV 144 (395)
Q Consensus 136 AtG~~~~~~ 144 (395)
|+|.+|..+
T Consensus 160 ADG~~S~vR 168 (413)
T PRK07538 160 ADGIHSAVR 168 (413)
T ss_pred CCCCCHHHh
Confidence 999876543
No 161
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.98 E-value=3.3e-10 Score=107.08 Aligned_cols=127 Identities=25% Similarity=0.275 Sum_probs=35.4
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceee-e--------cCCcccc-CC---CCC--CCCC
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQL-H--------LPKQFCQ-LP---YVP--FPRE 76 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~-~--------~~~~~~~-~~---~~~--~~~~ 76 (395)
||||||||++|++||+.+++.|.+|+|||+...+||............ . ....+.. .. ..+ ....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 799999999999999999999999999999999998665432111100 0 0000000 00 000 0001
Q ss_pred C--CCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc----EEEEeCEEEEeeCC
Q 039923 77 Y--PAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE----YEFMCRWLIVATGE 139 (395)
Q Consensus 77 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~----~~~~~d~lVlAtG~ 139 (395)
+ ........+...+.+.+.+.++++++++.|..+..+++ +..-|+..+ .++.++.+|-|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~-~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGG-RITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 1 01234455666777888888999999999999988753 333344442 78999999999994
No 162
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.96 E-value=6.4e-09 Score=98.42 Aligned_cols=128 Identities=15% Similarity=0.158 Sum_probs=80.0
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCcccc------ccc--------CCcCcee-----eecC--CccccCC
Q 039923 12 GPVIVGAGPSGLAAAACLKERG-VPSLIIEKESCLASL------WKL--------KIYDHLQ-----LHLP--KQFCQLP 69 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g-~~v~lie~~~~~~g~------~~~--------~~~~~~~-----~~~~--~~~~~~~ 69 (395)
+|+|||||++|+++|..|.+.| ++|+|+|+.+.++.. +.. ...+.+. ...+ ..+..+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 599999998755321 110 0000000 0000 0000000
Q ss_pred C--------CCCCCCC-CCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCC
Q 039923 70 Y--------VPFPREY-PAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGE 139 (395)
Q Consensus 70 ~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~ 139 (395)
. ....... ...+.+.++.+.+.+.+.. ..++++++|++++..+ ..|++++.+ .++.+|.||+|+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~ad~vVgADG~ 157 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--GIASFGKRATQIEEQA--EEVQVLFTDGTEYRCDLLIGADGI 157 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEecC--CcEEEEEcCCCEEEeeEEEECCCc
Confidence 0 0000011 1135677777777665532 4467899999998866 668888766 78999999999998
Q ss_pred CCCC
Q 039923 140 NEVP 143 (395)
Q Consensus 140 ~~~~ 143 (395)
+|..
T Consensus 158 ~S~v 161 (414)
T TIGR03219 158 KSAL 161 (414)
T ss_pred cHHH
Confidence 7653
No 163
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.96 E-value=1.2e-08 Score=96.53 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc------EEEEeCEEEEeeCCCCC
Q 039923 82 SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEV 142 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~------~~~~~d~lVlAtG~~~~ 142 (395)
....+...+.+.+.+.|++++.+++|++++..+ +.+.+.+.+ .++++|.||+|+|.++.
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 334566677788888899999999999998765 556554432 27999999999998753
No 164
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.95 E-value=2e-09 Score=73.10 Aligned_cols=51 Identities=31% Similarity=0.376 Sum_probs=42.4
Q ss_pred EECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCcc
Q 039923 15 IVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQF 65 (395)
Q Consensus 15 IIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~ 65 (395)
|||||++|+++|..|++.|++|+|+|+.+.+||.+....+++...+.....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~ 51 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHY 51 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-S
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEE
Confidence 899999999999999999999999999999999888766666665544433
No 165
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.95 E-value=6.5e-09 Score=96.26 Aligned_cols=140 Identities=19% Similarity=0.151 Sum_probs=82.3
Q ss_pred CeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCccc--ccccCCcCce-----------eeecCCccccCCCCCCCC-
Q 039923 12 GPVIVGAGPSGLAAAACLKER--GVPSLIIEKESCLAS--LWKLKIYDHL-----------QLHLPKQFCQLPYVPFPR- 75 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~--g~~v~lie~~~~~~g--~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~- 75 (395)
||+|||||++|+++|.+|++. |++|+++|+.+..++ +|......-. ....+......+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999987776 4432111000 000000000011000000
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCCCCCCCCCCc
Q 039923 76 EYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLPKIPGISEFR 155 (395)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p~~~g~~~~~ 155 (395)
.....+.+.+|.+++.+.+.. .+.++++|.+++ . +.+++ .+++++.++.||.|.|.. +..+...+...|.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~---~i~~~~~V~~v~--~--~~v~l-~dg~~~~A~~VI~A~G~~--s~~~~~~~~Q~f~ 150 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPE---GVILGRKAVGLD--A--DGVDL-APGTRINARSVIDCRGFK--PSAHLKGGFQVFL 150 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcc---cEEecCEEEEEe--C--CEEEE-CCCCEEEeeEEEECCCCC--CCccccceeeEEE
Confidence 011344677888877654433 366688888883 2 33444 344889999999999954 2222224555555
Q ss_pred ccEeec
Q 039923 156 GRLLHT 161 (395)
Q Consensus 156 ~~~~~~ 161 (395)
|.....
T Consensus 151 G~~~r~ 156 (370)
T TIGR01789 151 GREMRL 156 (370)
T ss_pred EEEEEE
Confidence 554444
No 166
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.95 E-value=1.7e-08 Score=99.79 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=83.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCccc------cccc--------C----------CcCceeeecCC-
Q 039923 10 TPGPVIVGAGPSGLAAAACLKER-GVPSLIIEKESCLAS------LWKL--------K----------IYDHLQLHLPK- 63 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~-g~~v~lie~~~~~~g------~~~~--------~----------~~~~~~~~~~~- 63 (395)
.+||+||||||+|+++|..|++. |++|+|||+.+.... +... . .........+.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 57999999999999999999995 999999999863211 0000 0 00000000000
Q ss_pred ----cccc---CCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCC--ccccCceEEEEEEcCC-CCcEEEEEc-------
Q 039923 64 ----QFCQ---LPYVPFP-REYP-AYPSGQQFITYMEAYANHFEI--EPLLGQEVQWAKYDAA-MGHWRVKTH------- 124 (395)
Q Consensus 64 ----~~~~---~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~V~~v~~~~~-~~~~~v~~~------- 124 (395)
.... ....... ..++ ...++..+.+.+.+.+.+.+. .++++++++.++.++. ...+++++.
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 0000 0000000 0011 234677788888888877764 6788999999987642 134556653
Q ss_pred c--EEEEeCEEEEeeCCCCCCC
Q 039923 125 E--YEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 125 ~--~~~~~d~lVlAtG~~~~~~ 144 (395)
+ +++++|+||.|.|..|..+
T Consensus 192 g~~~tv~A~~lVGaDGa~S~VR 213 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSRVR 213 (634)
T ss_pred CceEEEEeCEEEECCCCchHHH
Confidence 3 6899999999999876544
No 167
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.94 E-value=6.7e-09 Score=99.78 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=77.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC-CcccccccCCcCcee----e---e-c--------CCccccCCCCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES-CLASLWKLKIYDHLQ----L---H-L--------PKQFCQLPYVP 72 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~-~~~g~~~~~~~~~~~----~---~-~--------~~~~~~~~~~~ 72 (395)
.+||+|||||+||+.||..+++.|.+|+++|+.. .+|+........+.. + . . ......+....
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln 83 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLN 83 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecc
Confidence 5899999999999999999999999999999983 444311110000000 0 0 0 00000011000
Q ss_pred C---CCCC--CCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCC
Q 039923 73 F---PREY--PAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGEN 140 (395)
Q Consensus 73 ~---~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~ 140 (395)
. +..+ ....++..+...+...+.+. ++++ +.++|..+...++ ...-|.+.+ ..+.++.||+|||.+
T Consensus 84 ~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~g-rV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 84 TSKGPAVRALRAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVENG-RVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred cCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecCC-EEEEEEECCCCEEECCEEEEeeCcc
Confidence 0 0000 11345666778887777765 6776 4667887766542 333355554 789999999999954
No 168
>PLN02985 squalene monooxygenase
Probab=98.90 E-value=1.7e-08 Score=97.22 Aligned_cols=135 Identities=17% Similarity=0.119 Sum_probs=78.4
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc----ccccc----------C-----------CcCceeeecC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA----SLWKL----------K-----------IYDHLQLHLP 62 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~----g~~~~----------~-----------~~~~~~~~~~ 62 (395)
...+||+|||||++|+++|..|++.|++|+|+|+..... |.+-+ . ...+......
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~ 120 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKD 120 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEEC
Confidence 345899999999999999999999999999999974321 11100 0 0111111111
Q ss_pred Ccc--ccCCCCC--CCCC-CCCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCC--cEEEEEcc---EEEEeC
Q 039923 63 KQF--CQLPYVP--FPRE-YPAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMG--HWRVKTHE---YEFMCR 131 (395)
Q Consensus 63 ~~~--~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~--~~~v~~~~---~~~~~d 131 (395)
... ..++... .+.. ......+.++.+.+.+.+.+. ++++..+ +++.+..+++ . .+++...+ .++.+|
T Consensus 121 g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~-~v~gV~~~~~dG~~~~~~Ad 198 (514)
T PLN02985 121 GKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKG-VIKGVTYKNSAGEETTALAP 198 (514)
T ss_pred CEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCC-EEEEEEEEcCCCCEEEEECC
Confidence 110 1111100 0000 012346778888888888766 5777654 5666654432 2 22332222 357799
Q ss_pred EEEEeeCCCCCCC
Q 039923 132 WLIVATGENEVPV 144 (395)
Q Consensus 132 ~lVlAtG~~~~~~ 144 (395)
.||.|+|.+|..+
T Consensus 199 LVVgADG~~S~vR 211 (514)
T PLN02985 199 LTVVCDGCYSNLR 211 (514)
T ss_pred EEEECCCCchHHH
Confidence 9999999876543
No 169
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.90 E-value=2.9e-08 Score=96.00 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc------EEEEeCEEEEeeCCCCCC
Q 039923 84 QQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVP 143 (395)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~------~~~~~d~lVlAtG~~~~~ 143 (395)
..+...+...+.+.|++++.+++|+.+...+ +.|.+++.+ .++.++.||+|+|.|+..
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~ 218 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARREN--GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQ 218 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHH
Confidence 4455556666888899999999999998765 566666542 479999999999987643
No 170
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.90 E-value=3e-08 Score=95.87 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-----EEEEeCEEEEeeCCCCCC
Q 039923 82 SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-----YEFMCRWLIVATGENEVP 143 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-----~~~~~d~lVlAtG~~~~~ 143 (395)
....+...+...+.+.|++++.+++|+++...+ +.|.|++.+ .++.++.||.|+|.|+..
T Consensus 153 d~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~ 217 (502)
T PRK13369 153 DDARLVVLNALDAAERGATILTRTRCVSARREG--GLWRVETRDADGETRTVRARALVNAAGPWVTD 217 (502)
T ss_pred cHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEEEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence 344555666677888899999999999998765 567676544 469999999999987643
No 171
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.89 E-value=1.1e-08 Score=88.78 Aligned_cols=139 Identities=22% Similarity=0.331 Sum_probs=93.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc--cc-------c--------------------cccCC-cCcee
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL--AS-------L--------------------WKLKI-YDHLQ 58 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~--~g-------~--------------------~~~~~-~~~~~ 58 (395)
+..+++|||||.-|+++|++|+++|.++.++|+.+-. -| + |++.. ..+..
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 4578999999999999999999999999999997421 01 0 11100 00000
Q ss_pred eecCC---------------------------cc-------ccCC-CCCCCCCC-------CCCCCHHHHHHHHHHHHHH
Q 039923 59 LHLPK---------------------------QF-------CQLP-YVPFPREY-------PAYPSGQQFITYMEAYANH 96 (395)
Q Consensus 59 ~~~~~---------------------------~~-------~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 96 (395)
+..+. .. -.+| ..++++++ .+.+........++..+++
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~ 165 (399)
T KOG2820|consen 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARE 165 (399)
T ss_pred ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHH
Confidence 00000 00 0233 34445444 3456678889999999999
Q ss_pred cCCccccCceEEEEEEcCCC-CcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCC
Q 039923 97 FEIEPLLGQEVQWAKYDAAM-GHWRVKTHE-YEFMCRWLIVATGENEVPVLPK 147 (395)
Q Consensus 97 ~~~~~~~~~~V~~v~~~~~~-~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~ 147 (395)
+|+.++.+..|+.+.+.+.+ ....|.+.+ ..+.++.+|+|+|+|....+|.
T Consensus 166 ~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 166 LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred cCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCc
Confidence 99999999999999865432 333455555 6699999999999987666664
No 172
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.89 E-value=1.7e-08 Score=96.61 Aligned_cols=60 Identities=8% Similarity=-0.044 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCC
Q 039923 82 SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~ 144 (395)
....+...+.+.+.+.|++++.+++|+.++. . +.+.|++++.++.+|.||+|+|.++...
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~~~v~t~~g~v~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVEIHENTPMTGLEE-G--QPAVVRTPDGQVTADKVVLALNAWMASH 240 (460)
T ss_pred CHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C--CceEEEeCCcEEECCEEEEccccccccc
Confidence 3445666777788888999999999999975 2 4466777777899999999999875433
No 173
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.89 E-value=6.5e-08 Score=93.55 Aligned_cols=132 Identities=19% Similarity=0.197 Sum_probs=81.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc-c-ccCCc---------------------Ccee-----e--
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL-W-KLKIY---------------------DHLQ-----L-- 59 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~-~-~~~~~---------------------~~~~-----~-- 59 (395)
.+||||||+|.+|++||+.+++.|.+|+||||....||. . ....+ ..+. .
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d 140 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 140 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 579999999999999999999999999999999877652 1 11000 0000 0
Q ss_pred ---------ecCC--cccc-----CCCCC------CCCCC-C--CCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcC
Q 039923 60 ---------HLPK--QFCQ-----LPYVP------FPREY-P--AYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDA 114 (395)
Q Consensus 60 ---------~~~~--~~~~-----~~~~~------~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~ 114 (395)
+.+. .++. +.... .+... + .......+.+.+.+.+++.+++++++++|+.+...+
T Consensus 141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~ 220 (506)
T PRK06481 141 KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKD 220 (506)
T ss_pred HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecC
Confidence 0000 0000 00000 00000 0 111234677788888888899999999999997644
Q ss_pred CCC--cEEEEEcc---EEEEeCEEEEeeCCCCC
Q 039923 115 AMG--HWRVKTHE---YEFMCRWLIVATGENEV 142 (395)
Q Consensus 115 ~~~--~~~v~~~~---~~~~~d~lVlAtG~~~~ 142 (395)
+ + .+.+...+ ..+.++.||+|+|.+..
T Consensus 221 g-~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 221 G-KVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred C-EEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 1 2 23333333 57999999999996543
No 174
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.88 E-value=6.8e-08 Score=92.17 Aligned_cols=130 Identities=23% Similarity=0.215 Sum_probs=81.8
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCccccccc--------CC-------c-Ccee------e------ecC
Q 039923 12 GPVIVGAGPSGLAAAACLKERG-VPSLIIEKESCLASLWKL--------KI-------Y-DHLQ------L------HLP 62 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g-~~v~lie~~~~~~g~~~~--------~~-------~-~~~~------~------~~~ 62 (395)
||||||||.+|++||.+++++| .+|+|+||....||.-.. .. . .... + ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999999776552110 00 0 0000 0 000
Q ss_pred -----------C--ccccCCCCCC-------CC--CC-------CCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEc
Q 039923 63 -----------K--QFCQLPYVPF-------PR--EY-------PAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYD 113 (395)
Q Consensus 63 -----------~--~~~~~~~~~~-------~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~ 113 (395)
. .++. ....+ .. .. ........+.+.+.+.+++.+++++++++|+++..+
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~ 159 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQD 159 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEEC
Confidence 0 0000 00000 00 00 011234678888999999999999999999999886
Q ss_pred CCCCcE--EEEEcc---EEEEeCEEEEeeCCCCC
Q 039923 114 AAMGHW--RVKTHE---YEFMCRWLIVATGENEV 142 (395)
Q Consensus 114 ~~~~~~--~v~~~~---~~~~~d~lVlAtG~~~~ 142 (395)
++...+ .+...+ ..+.++.||+|+|.++.
T Consensus 160 ~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 160 DQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 532322 233333 35789999999997654
No 175
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.88 E-value=1.6e-08 Score=93.29 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EE-EEeCEEEEeeCCCCCC
Q 039923 82 SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YE-FMCRWLIVATGENEVP 143 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~-~~~d~lVlAtG~~~~~ 143 (395)
.-.++...+.+.+.+.|.+++++++|+.++..++ +.+.+.+.+ ++ +++++||.|.|..+.+
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 151 DPGELTRALAEEAQANGVELRLNTEVTGIEKQSD-GVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-ceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 4455666777788888999999999999999874 255566655 33 9999999999976543
No 176
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.85 E-value=5e-08 Score=92.98 Aligned_cols=99 Identities=22% Similarity=0.257 Sum_probs=79.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------------------PR--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------CC--CCHHHHHH
Confidence 3689999999999999999999999999999976331 00 12456667
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.+++++.+++|++++..+ +.+.++.++.++.+|.||+|+| ..|..
T Consensus 204 ~~~~l~~~GI~i~~~~~V~~i~~~~--~~v~v~~~g~~i~~D~viva~G--~~p~~ 255 (438)
T PRK07251 204 AKQYMEEDGITFLLNAHTTEVKNDG--DQVLVVTEDETYRFDALLYATG--RKPNT 255 (438)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEecC--CEEEEEECCeEEEcCEEEEeeC--CCCCc
Confidence 7778888899999999999998754 4555666568899999999999 55554
No 177
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.85 E-value=6.4e-08 Score=91.44 Aligned_cols=61 Identities=11% Similarity=-0.117 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCC
Q 039923 81 PSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENE 141 (395)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~ 141 (395)
.....+...+.+.+.+.|++++.+++|++++..++...+.|++++.++.++.||+|+|.++
T Consensus 180 v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 180 ARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGHS 240 (407)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChhh
Confidence 3344555566777888899999999999998654334455777777899999999999754
No 178
>PLN02661 Putative thiazole synthesis
Probab=98.84 E-value=2.7e-08 Score=89.23 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=77.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCccc-ccccCC-cCceeeecC-CccccCCCCCCCC--CCCCCCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKER-GVPSLIIEKESCLAS-LWKLKI-YDHLQLHLP-KQFCQLPYVPFPR--EYPAYPS 82 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~-g~~v~lie~~~~~~g-~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ 82 (395)
..+||+|||||++|+.+|+.|++. |++|+|||+...+|| .|.... +....+..+ ..++..-..++.. ++.....
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h 170 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH 170 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence 458999999999999999999986 899999999988766 443211 111111000 0111111111111 1111113
Q ss_pred HHHHHHHHHHHHH-HcCCccccCceEEEEEEcCCCCcEEEEE-------c-------c-EEEEeCEEEEeeCC
Q 039923 83 GQQFITYMEAYAN-HFEIEPLLGQEVQWAKYDAAMGHWRVKT-------H-------E-YEFMCRWLIVATGE 139 (395)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~~V~~v~~~~~~~~~~v~~-------~-------~-~~~~~d~lVlAtG~ 139 (395)
..++.+.+...+. +.+++++.++.+..+-.+++ +..-+.. + + ..+.++.||+|||.
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~g-rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGD-RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCC-EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 3455555555444 46899998999888876542 2111111 1 1 36899999999995
No 179
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.84 E-value=3.9e-08 Score=93.88 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHH----cC--CccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCC
Q 039923 81 PSGQQFITYMEAYANH----FE--IEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEV 142 (395)
Q Consensus 81 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~ 142 (395)
++...+...+.+.+.+ .| ++++.+++|+.++..++ +.|.|++++.++.+++||+|+|.|+.
T Consensus 208 Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-~~~~V~T~~G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 208 VDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND-SLYKIHTNRGEIRARFVVVSACGYSL 274 (497)
T ss_pred ECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-CeEEEEECCCEEEeCEEEECcChhHH
Confidence 3445666777777777 67 66889999999988642 67888888878999999999998764
No 180
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.83 E-value=3.3e-08 Score=98.93 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCC
Q 039923 81 PSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVP 143 (395)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~ 143 (395)
+....+...+.+.+.+ |++++.+++|++++..+ +.|.|.+++ ..+.+|.||+|+|.++..
T Consensus 405 v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~v~t~~g~~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 405 LCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQLDFAGGTLASAPVVVLANGHDAAR 465 (662)
T ss_pred eCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEEEEECCCcEEECCEEEECCCCCccc
Confidence 3445677777777777 89999999999998866 678887776 557899999999987643
No 181
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.83 E-value=4.2e-08 Score=91.31 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCCC
Q 039923 82 SGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~p 146 (395)
....+...+.+.+.+. |++++.+++|+.++.. .|.+++.++.+|.||+|+|.++....+
T Consensus 143 ~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~------~v~t~~g~i~a~~VV~A~G~~s~~l~~ 202 (365)
T TIGR03364 143 EPREAIPALAAYLAEQHGVEFHWNTAVTSVETG------TVRTSRGDVHADQVFVCPGADFETLFP 202 (365)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC------eEEeCCCcEEeCEEEECCCCChhhhCc
Confidence 4455666666666654 9999999999998642 367766668899999999987654443
No 182
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=8.7e-08 Score=92.16 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=76.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
..+|+|||||+.|+.+|..|++.|.+|+++|+.+.+. +. ...++.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT--EDAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999876321 00 12556777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE-cc--EEEEeCEEEEeeCCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT-HE--YEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~-~~--~~~~~d~lVlAtG~~~~~~~p 146 (395)
+.+.+++.|++++.+++|++++..+.++...+.+ ++ .++.+|.||+|+| .+|..+
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G--~~p~~~ 284 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVG--RRPNTE 284 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeC--CccCCC
Confidence 7778888899999999999997621113322333 23 5799999999999 555543
No 183
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.80 E-value=5.6e-08 Score=90.74 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=77.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ....++...
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~~ 188 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------S-LMPPEVSSR 188 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------h-hCCHHHHHH
Confidence 36899999999999999999999999999998764310 0 011455677
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGE 139 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~ 139 (395)
+.+.+++.+++++.+++|.+++..+ ..+.+.+.+ .++.+|.||+|+|.
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccC--CEEEEEEcCCcEEECCEEEECcCC
Confidence 7778888899999999999998765 556677665 78999999999994
No 184
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.79 E-value=6.7e-08 Score=94.21 Aligned_cols=60 Identities=13% Similarity=-0.035 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE----cc--EEEEeCEEEEeeCCCCC
Q 039923 82 SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT----HE--YEFMCRWLIVATGENEV 142 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~----~~--~~~~~d~lVlAtG~~~~ 142 (395)
+...+...+...+.++|++++.+++|+.+...++ +.+.+++ .+ .++.++.||+|+|.|+.
T Consensus 147 dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 147 DPFRLTAANMLDAKEHGAQILTYHEVTGLIREGD-TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCC-eEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 4445566666778888999999999999987652 3222433 12 57999999999998753
No 185
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.78 E-value=1.6e-07 Score=90.27 Aligned_cols=132 Identities=15% Similarity=0.165 Sum_probs=80.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC--cccc-ccc-C---CcCce---e-e-ecCCc------------
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESC--LASL-WKL-K---IYDHL---Q-L-HLPKQ------------ 64 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~--~~g~-~~~-~---~~~~~---~-~-~~~~~------------ 64 (395)
..+||||||+|++|+++|.++++.|.+|+||||... .||. ... . ..... . . ..+..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 347999999999999999999999999999999863 4442 110 0 00000 0 0 00000
Q ss_pred ------------------cccCCCCCCCC---C-C--C-----CCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCC
Q 039923 65 ------------------FCQLPYVPFPR---E-Y--P-----AYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAA 115 (395)
Q Consensus 65 ------------------~~~~~~~~~~~---~-~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~ 115 (395)
++.....++.. . . . .......+...+.+.+++.+++++.+++|+.+..++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~- 161 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD- 161 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-
Confidence 00000000000 0 0 0 000135677888888889999999999999998754
Q ss_pred CCcEEEEEc-----cEEEEeCEEEEeeCCCC
Q 039923 116 MGHWRVKTH-----EYEFMCRWLIVATGENE 141 (395)
Q Consensus 116 ~~~~~v~~~-----~~~~~~d~lVlAtG~~~ 141 (395)
.+.+-+... ...+.++.||+|||.+.
T Consensus 162 g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 162 GRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 233334332 15789999999999644
No 186
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.78 E-value=8.2e-08 Score=93.95 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=80.3
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC-c-c-ccccc--CC-------cCce-----------------ee
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESC-L-A-SLWKL--KI-------YDHL-----------------QL 59 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~-~-~-g~~~~--~~-------~~~~-----------------~~ 59 (395)
...+|+|||||++|+++|..|.++|++|+|||+... . + |.+.. .. ...+ +.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 458999999999999999999999999999999752 1 1 11100 00 0000 00
Q ss_pred e---c--CC-ccccCCCCCC--CCCCC--CCCCHHHHHHHHHHHHHHcCCc-cccCceEEEEEEcCCCCcEEEEEcc-EE
Q 039923 60 H---L--PK-QFCQLPYVPF--PREYP--AYPSGQQFITYMEAYANHFEIE-PLLGQEVQWAKYDAAMGHWRVKTHE-YE 127 (395)
Q Consensus 60 ~---~--~~-~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~v~~~~~~~~~~v~~~~-~~ 127 (395)
. . .. ....++.... ....+ ..+.+.++.+.+.+. .+.. ++++++|++++..+ +.+++++.+ .+
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~~i~~g~~V~~I~~~~--d~VtV~~~dG~t 234 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGEDVIRNESNVVDFEDSG--DKVTVVLENGQR 234 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCCEEEcCCEEEEEEEeC--CEEEEEECCCCE
Confidence 0 0 00 0011111100 00111 134677777777443 3333 56788999998766 677787776 78
Q ss_pred EEeCEEEEeeCCCCCCC
Q 039923 128 FMCRWLIVATGENEVPV 144 (395)
Q Consensus 128 ~~~d~lVlAtG~~~~~~ 144 (395)
+.+|.||.|.|.++..+
T Consensus 235 i~aDlVVGADG~~S~vR 251 (668)
T PLN02927 235 YEGDLLVGADGIWSKVR 251 (668)
T ss_pred EEcCEEEECCCCCcHHH
Confidence 99999999999877443
No 187
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.78 E-value=1.5e-06 Score=80.41 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=31.4
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
+||+|||+|++|+++|..+.+.|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999975
No 188
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.77 E-value=6.3e-08 Score=88.29 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=73.8
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEE-ecCCCcccccccCCcC---------------ceeeecCC-ccccCCCCCC-
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLII-EKESCLASLWKLKIYD---------------HLQLHLPK-QFCQLPYVPF- 73 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~li-e~~~~~~g~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~- 73 (395)
||+|||||.||+.||+.+++.|.+|+|+ .+.+.++..-...... +.-..... ...++...+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 7999999999999999999999999999 4444443321111000 00000000 0000000000
Q ss_pred --CCCC--CCCCCHHHHHHHHHHHHHH-cCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCC
Q 039923 74 --PREY--PAYPSGQQFITYMEAYANH-FEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGE 139 (395)
Q Consensus 74 --~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~ 139 (395)
+..+ ...+++..+..++++.++. .++++. .++|+.+...++ ...-|.+.+ ..+.++.+|+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~-~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENG-KVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTT-EEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCC-eEEEEEeCCCCEEecCEEEEeccc
Confidence 1111 1246788999999998887 467764 678999987663 444466665 89999999999994
No 189
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.76 E-value=1.3e-07 Score=88.69 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=83.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++++|||||+.|+..|..+++.|.+|+|+|+.+.+.. ...+++.+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp---------------------------------~~D~ei~~ 218 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP---------------------------------GEDPEISK 218 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC---------------------------------cCCHHHHH
Confidence 446799999999999999999999999999999874320 12378899
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-E--EEEeCEEEEeeCCCCCCCCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-Y--EFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~--~~~~d~lVlAtG~~~~~~~p 146 (395)
.+.+.+++.++.++.++.|+.++..++ .+.+++++ . .+.+|.+++|+| -+|+..
T Consensus 219 ~~~~~l~~~gv~i~~~~~v~~~~~~~~--~v~v~~~~g~~~~~~ad~vLvAiG--R~Pn~~ 275 (454)
T COG1249 219 ELTKQLEKGGVKILLNTKVTAVEKKDD--GVLVTLEDGEGGTIEADAVLVAIG--RKPNTD 275 (454)
T ss_pred HHHHHHHhCCeEEEccceEEEEEecCC--eEEEEEecCCCCEEEeeEEEEccC--CccCCC
Confidence 999988887899999999999988763 36677665 2 789999999999 566554
No 190
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.76 E-value=8.1e-08 Score=91.96 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=78.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccc-ccCCc-------Ccee------------eecCC------
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLW-KLKIY-------DHLQ------------LHLPK------ 63 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~-~~~~~-------~~~~------------~~~~~------ 63 (395)
|+||+|||||.+|++||..+++.|.+|+|+||....+.+. .+... +... +..+.
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4799999999999999999999999999999985432211 11000 0000 00000
Q ss_pred -------ccc---cCCCCC--CC--CCCCC-----CCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc
Q 039923 64 -------QFC---QLPYVP--FP--REYPA-----YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH 124 (395)
Q Consensus 64 -------~~~---~~~~~~--~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~ 124 (395)
.++ ..++.. .. ..++. -.....+.+.+.+.+.+.++++..+ .++.+..++ .+..-+..+
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v~Gv~~~ 158 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN-GKAYGVFLD 158 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEEEEEEEC
Confidence 000 011100 00 01110 1134578888888888889998755 677776543 132234455
Q ss_pred cEEEEeCEEEEeeCCCCC
Q 039923 125 EYEFMCRWLIVATGENEV 142 (395)
Q Consensus 125 ~~~~~~d~lVlAtG~~~~ 142 (395)
+..+.++.||+|||.++.
T Consensus 159 g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 159 GELLKFDATVIATGGFSG 176 (466)
T ss_pred CEEEEeCeEEECCCcCcC
Confidence 578999999999997654
No 191
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.75 E-value=1.3e-07 Score=90.83 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=78.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+++|+.+.+. + ....++.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------P--GEDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------C--CCCHHHHHH
Confidence 3689999999999999999999999999999976331 0 012456677
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~p 146 (395)
+.+.+++.+++++.+++|++++..+ +.+.+.+.+ .++.+|.||+|+| ..|...
T Consensus 217 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 217 VAKALKKKGVKILTNTKVTAVEKND--DQVVYENKGGETETLTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEeCCcEEEEEeCEEEEecC--CcccCC
Confidence 7788888899999999999998765 555555433 4799999999999 555543
No 192
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.75 E-value=1.8e-07 Score=89.61 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=78.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++++|||||+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~--~~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------P--GEDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------c--cccHHHHHH
Confidence 3689999999999999999999999999999876321 0 012567777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~~~~~p 146 (395)
+.+.+++.+++++.+++|++++..+ ..+.+..++ .++.+|.||+|+| ..|...
T Consensus 217 l~~~L~~~GI~i~~~~~V~~i~~~~--~~v~~~~~g~~~~i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 217 LREKLENDGVKIFTGAALKGLNSYK--KQALFEYEGSIQEVNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEcC--CEEEEEECCceEEEEeCEEEEecC--CccCCC
Confidence 8888888899999999999998654 444454444 4799999999999 555543
No 193
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.74 E-value=2.3e-08 Score=94.94 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCC
Q 039923 79 AYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGE 139 (395)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~ 139 (395)
...++..|-++|.+.+.+.|++++.+ +|..+..+++.....|.+++ +++.+|++|-|+|.
T Consensus 149 yhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 149 YHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGR 209 (454)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGG
T ss_pred EEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCc
Confidence 34578999999999999999998766 58888887743334566765 89999999999994
No 194
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.73 E-value=2.1e-07 Score=88.61 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHH-cCCccccCceEEEEEEcCCCCcEEEEE---ccE---EEEeCEEEEeeCCCCC
Q 039923 82 SGQQFITYMEAYANH-FEIEPLLGQEVQWAKYDAAMGHWRVKT---HEY---EFMCRWLIVATGENEV 142 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~~V~~v~~~~~~~~~~v~~---~~~---~~~~d~lVlAtG~~~~ 142 (395)
+...+.+.+.+.+.+ .+++++++++|+.++..++ +.|+++. .+. ++.+|+||+|.|.|+.
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGWEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 334555556666644 4899999999999987632 6687763 222 6999999999998764
No 195
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.73 E-value=1e-07 Score=89.53 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.+. .....+.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 368999999999999999999999999999987643210 012456677
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGE 139 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~ 139 (395)
+.+.+++.+++++.+++|++++. + +.+.+.+.+ +++.+|.||+|+|.
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD-G--EKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc-C--CEEEEEECCCCEEECCEEEECCCC
Confidence 77788888999999999999875 2 444566655 78999999999994
No 196
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.73 E-value=2e-07 Score=89.50 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=79.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999976431 00 12566777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc-c---EEEEeCEEEEeeCCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH-E---YEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~-~---~~~~~d~lVlAtG~~~~~~~p 146 (395)
+.+.+++.+++++.+++|++++..+ +.+.+.+. + +++.+|.||+|+| .+|...
T Consensus 219 l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~gg~~~~i~~D~vi~a~G--~~p~~~ 275 (462)
T PRK06416 219 AERALKKRGIKIKTGAKAKKVEQTD--DGVTVTLEDGGKEETLEADYVLVAVG--RRPNTE 275 (462)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEEeCCeeEEEEeCEEEEeeC--CccCCC
Confidence 7888888899999999999998765 45555543 3 6799999999999 455543
No 197
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.72 E-value=1.8e-07 Score=88.74 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCC
Q 039923 83 GQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEV 142 (395)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~ 142 (395)
...+...+.+.+.+.|++++.+++|++++..++ +.+.+++++.++.+|.||+|+|.++.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-~~~~v~t~~~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGG-RITGVQTGGGVITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-EEEEEEeCCcEEeCCEEEECCCcchH
Confidence 446677777788888999999999999987652 22346666678999999999998654
No 198
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.72 E-value=1.3e-07 Score=97.44 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=33.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESC 44 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~ 44 (395)
..+||+|||||.+|+.||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 357999999999999999999999999999999763
No 199
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.71 E-value=2.7e-07 Score=88.67 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=78.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------PR--EEPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------------------Cc--cCHHHHHH
Confidence 3689999999999999999999999999999876321 00 12456677
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc---c-EEEEeCEEEEeeCCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH---E-YEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~---~-~~~~~d~lVlAtG~~~~~~~p 146 (395)
+.+.+++.+++++.+++|+.++..+ +.+.+++. + +++.+|.||+|+| ..|...
T Consensus 213 l~~~l~~~gV~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~i~~D~ViiA~G--~~p~~~ 269 (463)
T TIGR02053 213 VEEALAEEGIEVVTSAQVKAVSVRG--GGKIITVEKPGGQGEVEADELLVATG--RRPNTD 269 (463)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEcC--CEEEEEEEeCCCceEEEeCEEEEeEC--CCcCCC
Confidence 7888888899999999999998754 44445442 2 6899999999999 555544
No 200
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.71 E-value=1.3e-07 Score=84.45 Aligned_cols=133 Identities=25% Similarity=0.282 Sum_probs=86.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc------CCCEEEEecCCCcccccccC----------CcCcee-----eecC-----
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKER------GVPSLIIEKESCLASLWKLK----------IYDHLQ-----LHLP----- 62 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~------g~~v~lie~~~~~~g~~~~~----------~~~~~~-----~~~~----- 62 (395)
..+||+|||||||||++|++|.+. .++|+++||...+||.--+. ..+.++ +..+
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence 458999999999999999999775 46999999999888732211 111111 1111
Q ss_pred ------CccccCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc----------
Q 039923 63 ------KQFCQLPY-VPFPREYPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---------- 125 (395)
Q Consensus 63 ------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---------- 125 (395)
+.-...|. .++.+.-...++-.+++.++-+.++.+|+++.-+..+..+-+++++..--|.+++
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pK 234 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPK 234 (621)
T ss_pred eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCcc
Confidence 00001111 1222222344567899999999999999998777777777776654333333332
Q ss_pred ------EEEEeCEEEEeeCCCC
Q 039923 126 ------YEFMCRWLIVATGENE 141 (395)
Q Consensus 126 ------~~~~~d~lVlAtG~~~ 141 (395)
-.++++.-|+|-|+.+
T Consensus 235 d~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 235 DTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred ccccccceecceeEEEeccccc
Confidence 3688999999999754
No 201
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.71 E-value=8.7e-08 Score=87.92 Aligned_cols=128 Identities=23% Similarity=0.275 Sum_probs=74.4
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc-c-cccccCCcCceeee-------cC------Ccccc---------
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL-A-SLWKLKIYDHLQLH-------LP------KQFCQ--------- 67 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~-~-g~~~~~~~~~~~~~-------~~------~~~~~--------- 67 (395)
||+|||+|.|||++|+.|.+. .+|+|+-|...- + ..|.+.-....... .. ...|+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 999999998533 1 13433211100000 00 00000
Q ss_pred ----------CCCCCCCCCC-------------------CCCCCHHHHHHHHHHHHHH-cCCccccCceEEEEEEcCCCC
Q 039923 68 ----------LPYVPFPREY-------------------PAYPSGQQFITYMEAYANH-FEIEPLLGQEVQWAKYDAAMG 117 (395)
Q Consensus 68 ----------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~v~~~~~~~ 117 (395)
.-..++..+. ..-.....++..+...+++ .+++++.+..+..+-.+++..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 0001111110 0113456788888877776 588888777776665554311
Q ss_pred --cEEEEEc-c--EEEEeCEEEEeeCCC
Q 039923 118 --HWRVKTH-E--YEFMCRWLIVATGEN 140 (395)
Q Consensus 118 --~~~v~~~-~--~~~~~d~lVlAtG~~ 140 (395)
++.+... + ..+.++.+|+|||..
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 2222222 1 678999999999953
No 202
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.71 E-value=2.2e-07 Score=89.27 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=79.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS---------------------------------FLDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC---------------------------------cCCHHHHHH
Confidence 47899999999999999999999999999998763320 012567777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.+++++.+++|++++..+ +.+.+++.+ .++.+|.||+|+| .+|..
T Consensus 222 l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~vi~a~G--~~p~~ 274 (461)
T PRK05249 222 LSYHLRDSGVTIRHNEEVEKVEGGD--DGVIVHLKSGKKIKADCLLYANG--RTGNT 274 (461)
T ss_pred HHHHHHHcCCEEEECCEEEEEEEeC--CeEEEEECCCCEEEeCEEEEeec--CCccc
Confidence 8888888899999999999998765 456666554 7899999999999 45543
No 203
>PRK14694 putative mercuric reductase; Provisional
Probab=98.70 E-value=2.1e-07 Score=89.38 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=77.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++++|||+|+.|+.+|..|.+.|.+|+++++...++ ....++.+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~----------------------------------~~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS----------------------------------QEDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC----------------------------------CCCHHHHHH
Confidence 3689999999999999999999999999998743110 012456777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.|++++.+++|.+++..+ +.+.+.+++.++.+|.||+|+| ..|..
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~~--~~~~v~~~~~~i~~D~vi~a~G--~~pn~ 275 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYNG--REFILETNAGTLRAEQLLVATG--RTPNT 275 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEECCCEEEeCEEEEccC--CCCCc
Confidence 8888888899999999999998765 5555666666799999999999 45554
No 204
>PRK06116 glutathione reductase; Validated
Probab=98.68 E-value=3.1e-07 Score=87.89 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=79.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR---------------------------------GFDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc---------------------------------ccCHHHHHH
Confidence 36899999999999999999999999999998763210 012466777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p 146 (395)
+.+.+++.+++++.+++|.+++..++ +.+.+.+.+ +++.+|.||+|+| ..|...
T Consensus 214 l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~v~~~~g~~i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 214 LVEEMEKKGIRLHTNAVPKAVEKNAD-GSLTLTLEDGETLTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHHCCcEEECCCEEEEEEEcCC-ceEEEEEcCCcEEEeCEEEEeeC--CCcCCC
Confidence 77888888999999999999987653 335566655 7899999999999 455543
No 205
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.68 E-value=1.8e-06 Score=78.46 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCC
Q 039923 84 QQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVP 143 (395)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~ 143 (395)
..+++-++++++++|++++++++|..++..++. ...+.+.+ ..+.+|+||+|.|..++.
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~-~~~v~~~~g~~i~~~~vvlA~Grsg~d 232 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNE-VLGVKLTKGEEIEADYVVLAPGRSGRD 232 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCc-eEEEEccCCcEEecCEEEEccCcchHH
Confidence 355667788999999999999999999998743 34455555 799999999999975443
No 206
>PRK07121 hypothetical protein; Validated
Probab=98.68 E-value=5.9e-07 Score=86.90 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=35.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
..+||||||+|.+|++||.++++.|.+|+|+||....||
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 358999999999999999999999999999999877665
No 207
>PRK14727 putative mercuric reductase; Provisional
Probab=98.68 E-value=2.8e-07 Score=88.72 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=77.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITYM 90 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (395)
++|+|||||+.|+.+|..|.+.|.+|+++++...+. ....++.+.+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----------------------------------~~d~~~~~~l 234 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----------------------------------REDPLLGETL 234 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----------------------------------cchHHHHHHH
Confidence 689999999999999999999999999998743110 1124567778
Q ss_pred HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCC
Q 039923 91 EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~ 145 (395)
.+.+++.|++++.+++|++++..+ +.+.+.+++.++.+|.||+|+|. .|..
T Consensus 235 ~~~L~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~g~i~aD~VlvA~G~--~pn~ 285 (479)
T PRK14727 235 TACFEKEGIEVLNNTQASLVEHDD--NGFVLTTGHGELRAEKLLISTGR--HANT 285 (479)
T ss_pred HHHHHhCCCEEEcCcEEEEEEEeC--CEEEEEEcCCeEEeCEEEEccCC--CCCc
Confidence 888888899999999999998765 55667666667999999999994 4443
No 208
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.68 E-value=2.3e-07 Score=88.00 Aligned_cols=130 Identities=24% Similarity=0.273 Sum_probs=76.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccC--CcC--c--ee--e---ecCC----------------c
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK--IYD--H--LQ--L---HLPK----------------Q 64 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~--~~~--~--~~--~---~~~~----------------~ 64 (395)
||||||+|.+|++||+.++++|.+|+|+||....||..... ... . .. . +.+. .
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 89999999999999999999999999999998876622110 000 0 00 0 0000 0
Q ss_pred --------------cccCCCCCCCC----------------C------CC-----CCCCHHHHHHHHHHHHHHcCCcccc
Q 039923 65 --------------FCQLPYVPFPR----------------E------YP-----AYPSGQQFITYMEAYANHFEIEPLL 103 (395)
Q Consensus 65 --------------~~~~~~~~~~~----------------~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (395)
++.....++.. . .. .......+...+.+.+++.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~ 160 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRF 160 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeec
Confidence 00000000000 0 00 0114567888999999999999999
Q ss_pred CceEEEEEEcCCCCcEEEEEc----c--EEEEeCEEEEeeCCCCC
Q 039923 104 GQEVQWAKYDAAMGHWRVKTH----E--YEFMCRWLIVATGENEV 142 (395)
Q Consensus 104 ~~~V~~v~~~~~~~~~~v~~~----~--~~~~~d~lVlAtG~~~~ 142 (395)
+++++++..+++ +..-+... + ..+.++.||+|||.+..
T Consensus 161 ~~~~~~Li~e~g-~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 161 NTRVTDLITEDG-RVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp SEEEEEEEEETT-EEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cceeeeEEEeCC-ceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 999999988653 22223332 2 57899999999996543
No 209
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.67 E-value=2.2e-07 Score=88.89 Aligned_cols=96 Identities=27% Similarity=0.216 Sum_probs=76.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. . ....++.+.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~-~~~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP-------------------------------D-SFDKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc-------------------------------h-hcCHHHHHH
Confidence 36899999999999999999999999999998753210 0 012567788
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGE 139 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~ 139 (395)
+.+.+++.+++++.+++|.+++..+ +.+.+.+++.++.+|.||+|+|.
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~~~i~~d~vi~a~G~ 244 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIGED--KVEGVVTDKGEYEADVVIVATGV 244 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEecCC--cEEEEEeCCCEEEcCEEEECcCC
Confidence 8888899999999999999996543 44445566678999999999994
No 210
>PTZ00367 squalene epoxidase; Provisional
Probab=98.67 E-value=2.1e-07 Score=90.45 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=33.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999975
No 211
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.67 E-value=3.4e-07 Score=87.41 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=78.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG--FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc--cCHHHHHH
Confidence 4679999999999999999999999999999876321 00 12556677
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.+++++.+++|.+++..+ ..+.+++.+ .++.+|.||+|+| ..|..
T Consensus 213 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~viva~G--~~pn~ 265 (446)
T TIGR01424 213 LARNMEGRGIRIHPQTSLTSITKTD--DGLKVTLSHGEEIVADVVLFATG--RSPNT 265 (446)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcC--CeEEEEEcCCcEeecCEEEEeeC--CCcCC
Confidence 7778888899999999999998765 445566644 7899999999999 45543
No 212
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.66 E-value=5e-07 Score=89.02 Aligned_cols=45 Identities=33% Similarity=0.287 Sum_probs=38.0
Q ss_pred CCCCCC-CCCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc
Q 039923 1 MSSKAK-RFWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL 45 (395)
Q Consensus 1 m~~~~~-~~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~ 45 (395)
|+++++ ....+||||||||.||++||..+++.|.+|+|+||....
T Consensus 2 ~~~~~~~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~ 47 (598)
T PRK09078 2 MMSAYKIIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT 47 (598)
T ss_pred CcccccccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 556664 334589999999999999999999999999999998543
No 213
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.66 E-value=4.7e-07 Score=89.43 Aligned_cols=39 Identities=41% Similarity=0.411 Sum_probs=34.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
..+||||||+|.||+.||..+++.|.+|+|+||....+|
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 457999999999999999999999999999999865443
No 214
>PRK06370 mercuric reductase; Validated
Probab=98.66 E-value=3.3e-07 Score=87.98 Aligned_cols=99 Identities=22% Similarity=0.249 Sum_probs=77.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~---------------------------------~~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP---------------------------------REDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc---------------------------------ccCHHHHHH
Confidence 37899999999999999999999999999999764320 012456677
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE--c-c-EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT--H-E-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~--~-~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.+++++.+++|.+++..+ +...+.. . + .++.+|.||+|+| .+|..
T Consensus 218 l~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~i~~D~Vi~A~G--~~pn~ 273 (463)
T PRK06370 218 VREILEREGIDVRLNAECIRVERDG--DGIAVGLDCNGGAPEITGSHILVAVG--RVPNT 273 (463)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEEeCCCceEEEeCEEEECcC--CCcCC
Confidence 7888888899999999999998765 3333433 2 2 6899999999999 55554
No 215
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.66 E-value=5e-07 Score=85.31 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc------EEEEeCEEEEeeCCCCC
Q 039923 83 GQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEV 142 (395)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~------~~~~~d~lVlAtG~~~~ 142 (395)
...+.-....-+.+.|.+++..++|+.+..++ +.|-|...+ .+++++.||.|||.|+.
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREG--GVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecC--CEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 34455556667778899999999999999987 466676554 57999999999997653
No 216
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.66 E-value=3.5e-07 Score=87.27 Aligned_cols=99 Identities=17% Similarity=0.259 Sum_probs=78.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PR--EDRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CC--cCHHHHHH
Confidence 3689999999999999999999999999999875321 10 12456777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.|++++.+++|++++..+ +.+.+.+++.++.+|.|++|+| ..|..
T Consensus 205 l~~~l~~~gV~v~~~~~v~~i~~~~--~~v~v~~~~g~i~~D~vl~a~G--~~pn~ 256 (441)
T PRK08010 205 IATILRDQGVDIILNAHVERISHHE--NQVQVHSEHAQLAVDALLIASG--RQPAT 256 (441)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEcCCeEEeCEEEEeec--CCcCC
Confidence 7888888899999999999998765 5556666566789999999999 45543
No 217
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.65 E-value=1.6e-07 Score=84.10 Aligned_cols=151 Identities=18% Similarity=0.205 Sum_probs=107.7
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeec---cccCCChhH---HHHHHHhhCC---hhHHHHHHHHhh
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPK---KILGRSSFA---ISVWLLKWFP---VDVVDRFLLFCS 242 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~---~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~ 242 (395)
...|+|||+|++|+-.|..+.+.|++|+++++.+ .+-.+ .-.|+.++. ....+...+| ..+.+.+..+.+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~-k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGP-KLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCc-cccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 3579999999999999999999999999999988 33322 112233332 2344445567 777788888888
Q ss_pred hhhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEecC----eEEEeCCcEecCcEEEE
Q 039923 243 RLVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFTAK----GAEFVNRTVKEFDSIIL 316 (395)
Q Consensus 243 ~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g~~i~~D~vi~ 316 (395)
+.+....+++|++.-....-.+.....+...+-+.+..++++.+|++... |.++... .+.+.+|+++.||.+|+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence 88888889999983222222233333444556667788888999999876 7777655 36777888999999999
Q ss_pred cCCCCCC
Q 039923 317 ATGYRSN 323 (395)
Q Consensus 317 atG~~~~ 323 (395)
|||-+.-
T Consensus 162 AtGG~S~ 168 (408)
T COG2081 162 ATGGKSW 168 (408)
T ss_pred ecCCcCC
Confidence 9995443
No 218
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.63 E-value=3.7e-07 Score=83.73 Aligned_cols=98 Identities=27% Similarity=0.349 Sum_probs=78.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcC-------------CCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERG-------------VPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREY 77 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g-------------~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (395)
-+|+|+|||+.|+.+|..|++.- .+|+|+|+.+.+.-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp------------------------------ 205 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP------------------------------ 205 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc------------------------------
Confidence 46999999999999999998741 38999999875421
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-E-EEEeCEEEEeeCCCCCCCCCC
Q 039923 78 PAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-Y-EFMCRWLIVATGENEVPVLPK 147 (395)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~-~~~~d~lVlAtG~~~~~~~p~ 147 (395)
....++.++.++.+++.|++++.++.|++++.+. |++++ . .+.++.+|-|+|....+..-.
T Consensus 206 ---~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g~~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 206 ---MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred ---CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence 1236788999999999999999999999998765 77765 3 699999999999755554433
No 219
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.63 E-value=8.9e-08 Score=67.76 Aligned_cols=37 Identities=35% Similarity=0.662 Sum_probs=33.6
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeec
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPK 211 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~ 211 (395)
+++|||+|.+|+|+|..|++.|++||+++|++ +++|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~ 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPG 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhh
Confidence 58999999999999999999999999999999 56543
No 220
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.63 E-value=6.7e-07 Score=85.34 Aligned_cols=100 Identities=16% Similarity=0.066 Sum_probs=78.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~---------------------------------~~d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR---------------------------------SFDSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc---------------------------------ccCHHHHHH
Confidence 36899999999999999999999999999998763320 012556777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.+++++.++.|++++.... +.+.+.+++ ..+.+|.||+|+| ..|..
T Consensus 213 ~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~v~~~~g~~~i~~D~vi~a~G--~~pn~ 267 (450)
T TIGR01421 213 ITEEYEKEGINVHKLSKPVKVEKTVE-GKLVIHFEDGKSIDDVDELIWAIG--RKPNT 267 (450)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEeCC-ceEEEEECCCcEEEEcCEEEEeeC--CCcCc
Confidence 77888888999999999999986542 334555544 5799999999999 45554
No 221
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.63 E-value=5.1e-07 Score=86.77 Aligned_cols=99 Identities=22% Similarity=0.250 Sum_probs=77.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+. +. ...++.+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PN--EDAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Cc--cCHHHHHH
Confidence 3689999999999999999999999999999875321 10 12456777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc---c--EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH---E--YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~---~--~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.+++++.+++|++++..+ +.+.+.+. + .++.+|.||+|+| .+|..
T Consensus 219 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~~g~~~~i~~D~vi~a~G--~~pn~ 275 (466)
T PRK07818 219 IAKQYKKLGVKILTGTKVESIDDNG--SKVTVTVSKKDGKAQELEADKVLQAIG--FAPRV 275 (466)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEeC--CeEEEEEEecCCCeEEEEeCEEEECcC--cccCC
Confidence 7888888899999999999998654 44444432 3 5799999999999 45554
No 222
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.63 E-value=8.7e-08 Score=97.07 Aligned_cols=119 Identities=16% Similarity=0.161 Sum_probs=75.2
Q ss_pred CeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCc---cc--ccccCCcCceeeecC-------Cccc-------cCCC
Q 039923 12 GPVIVGAGPSGLAAAACLKER--GVPSLIIEKESCL---AS--LWKLKIYDHLQLHLP-------KQFC-------QLPY 70 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~--g~~v~lie~~~~~---~g--~~~~~~~~~~~~~~~-------~~~~-------~~~~ 70 (395)
+|+||||||+|+++|..|.+. |++|+|+|+.... |. .+.......+....+ ..+. ....
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 699999999999999999998 8999999998742 21 111110000100000 0000 0000
Q ss_pred CCC-CCCCC-CCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCC
Q 039923 71 VPF-PREYP-AYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVP 143 (395)
Q Consensus 71 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~ 143 (395)
... ..+.. ....+.++.+.+.+.+.+.+++++++++|..++.. ...+|.||.|+|.++..
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~-------------~~~~D~VVgADG~~S~v 143 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL-------------AADADLVIASDGLNSRI 143 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh-------------hcCCCEEEEcCCCCHHH
Confidence 000 00101 13678999999999999999999999888665321 14699999999987644
No 223
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.63 E-value=6.1e-07 Score=86.32 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=78.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------A--AADEQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------C--cCCHHHHHH
Confidence 3689999999999999999999999999999876321 0 012566777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-----EEEEeCEEEEeeCCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-----YEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-----~~~~~d~lVlAtG~~~~~~~p 146 (395)
+.+.+++.+++++.+++|++++..+ +.+.+...+ ..+.+|.|++|+| ..|..+
T Consensus 230 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~~~g~~~~i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 230 AAKAFTKQGLDIHLGVKIGEIKTGG--KGVSVAYTDADGEAQTLEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHHcCcEEEeCcEEEEEEEcC--CEEEEEEEeCCCceeEEEcCEEEEccC--CccCCC
Confidence 7777788899999999999998765 444454332 5799999999999 555544
No 224
>PLN02507 glutathione reductase
Probab=98.62 E-value=5.6e-07 Score=86.85 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=78.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+|+++.+.+. + ....++...
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------R--GFDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------c--ccCHHHHHH
Confidence 3689999999999999999999999999999875321 0 012567777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.+++++.+++|++++..+ +.+.+.+.+ .++.+|.|++|+| .+|..
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~v~~~~g~~i~~D~vl~a~G--~~pn~ 302 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKTE--GGIKVITDHGEEFVADVVLFATG--RAPNT 302 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeC--CeEEEEECCCcEEEcCEEEEeec--CCCCC
Confidence 7788888899999999999998755 445566655 6899999999999 45544
No 225
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.62 E-value=8.8e-07 Score=87.50 Aligned_cols=39 Identities=41% Similarity=0.364 Sum_probs=35.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
..+||+|||||.||++||..+++.|.+|+|+||....+|
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 357999999999999999999999999999999865544
No 226
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.62 E-value=2.4e-07 Score=86.95 Aligned_cols=60 Identities=15% Similarity=0.033 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHcCCc-cccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCC
Q 039923 81 PSGQQFITYMEAYANHFEIE-PLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEV 142 (395)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~ 142 (395)
.....+...+...+.+.|.. +..++.+..++.. . +.+.|.+.+.++.+|.||+|+|.++.
T Consensus 153 ~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~i~a~~vv~a~G~~~~ 213 (387)
T COG0665 153 LDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGTIEADKVVLAAGAWAG 213 (387)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCccEEeCEEEEcCchHHH
Confidence 34456677777888888854 5668888888876 3 66778888877999999999998654
No 227
>PRK13748 putative mercuric reductase; Provisional
Probab=98.62 E-value=4.1e-07 Score=89.61 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=78.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++++|||||+.|+.+|..|.+.|.+|+++++...+. ....++.+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~----------------------------------~~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF----------------------------------REDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc----------------------------------ccCHHHHHH
Confidence 3689999999999999999999999999999753110 012566777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.|++++.+++|++++..+ +.+.+.+++.++.+|.|++|+| ..|..
T Consensus 316 l~~~l~~~gI~i~~~~~v~~i~~~~--~~~~v~~~~~~i~~D~vi~a~G--~~pn~ 367 (561)
T PRK13748 316 VTAAFRAEGIEVLEHTQASQVAHVD--GEFVLTTGHGELRADKLLVATG--RAPNT 367 (561)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEecCCeEEeCEEEEccC--CCcCC
Confidence 8888888899999999999998755 5566666666799999999999 45554
No 228
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.62 E-value=6.4e-07 Score=85.95 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=78.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITYM 90 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (395)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------------------G--EDADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------C--CCHHHHHHH
Confidence 6899999999999999999999999999998764321 0 124567778
Q ss_pred HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 91 EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
.+.+++.+++++.+++|.+++..+ +.+.+.+.+ +++.+|.|++|+| .+|..
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~g~~l~~D~vl~a~G--~~pn~ 276 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVERTG--DGVVVTLTDGRTVEGSHALMAVG--SVPNT 276 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEEeC--CEEEEEECCCcEEEecEEEEeec--CCcCC
Confidence 888888899999999999998665 445566554 7899999999999 45554
No 229
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.62 E-value=4.6e-07 Score=89.56 Aligned_cols=61 Identities=11% Similarity=-0.014 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHHcCCccccCceEEEEEEcC-CCCcEEEEE----cc--EEEEeCEEEEeeCCCCC
Q 039923 82 SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDA-AMGHWRVKT----HE--YEFMCRWLIVATGENEV 142 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~-~~~~~~v~~----~~--~~~~~d~lVlAtG~~~~ 142 (395)
+...+...+...+.+.|++++.+++|+.+...+ ++..+.|+. .+ .++.++.||+|+|.|+.
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 445677777788888999999999999998763 223333333 22 37899999999998753
No 230
>PRK07846 mycothione reductase; Reviewed
Probab=98.61 E-value=5.6e-07 Score=85.84 Aligned_cols=99 Identities=21% Similarity=0.214 Sum_probs=75.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~---------------------------------~~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR---------------------------------HLDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc---------------------------------ccCHHHHHH
Confidence 36899999999999999999999999999998763210 011445555
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p 146 (395)
+.+.. +.+++++.+++|++++..+ +.+.+++.+ .++.+|.|++|+| .+|...
T Consensus 213 l~~l~-~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~~D~vl~a~G--~~pn~~ 265 (451)
T PRK07846 213 FTELA-SKRWDVRLGRNVVGVSQDG--SGVTLRLDDGSTVEADVLLVATG--RVPNGD 265 (451)
T ss_pred HHHHH-hcCeEEEeCCEEEEEEEcC--CEEEEEECCCcEeecCEEEEEEC--CccCcc
Confidence 55544 3578999999999998765 455566655 7899999999999 455543
No 231
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.61 E-value=6.4e-07 Score=88.38 Aligned_cols=133 Identities=20% Similarity=0.157 Sum_probs=77.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCccc-ccccCC--cCc-eee-ecCCcc----------------
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKER--GVPSLIIEKESCLAS-LWKLKI--YDH-LQL-HLPKQF---------------- 65 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~--g~~v~lie~~~~~~g-~~~~~~--~~~-~~~-~~~~~~---------------- 65 (395)
..+||||||||.||++||..+++. |.+|+||||....++ .+.... ... +.. ..+..+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 347999999999999999999998 999999999864322 211110 000 000 000000
Q ss_pred --------------ccCCCCCCC---CCC-------CCCCCHHHHHHHHHHHHHHcC-CccccCceEEEEEEcCCCCcEE
Q 039923 66 --------------CQLPYVPFP---REY-------PAYPSGQQFITYMEAYANHFE-IEPLLGQEVQWAKYDAAMGHWR 120 (395)
Q Consensus 66 --------------~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~v~~~~~~~~~~ 120 (395)
+..-..++. .+. ........+...+...+.+.+ ++++.++.|+.+..+++ ...-
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g-~v~G 168 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDN-RIAG 168 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCC-EEEE
Confidence 000000110 000 001234466677777777765 99999999999875442 2111
Q ss_pred E---EEcc---EEEEeCEEEEeeCCCCC
Q 039923 121 V---KTHE---YEFMCRWLIVATGENEV 142 (395)
Q Consensus 121 v---~~~~---~~~~~d~lVlAtG~~~~ 142 (395)
+ ...+ ..+.++.||+|||.++.
T Consensus 169 v~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 169 AVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEccCCcEEEEECCEEEECCCchhh
Confidence 2 2222 47899999999996554
No 232
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.58 E-value=5.2e-07 Score=85.80 Aligned_cols=98 Identities=24% Similarity=0.297 Sum_probs=75.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||++|+.+|..|++.|.+|+++++.+.+.. + ....++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~--~~~~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------K--LFDEEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------c--ccCHHHHHH
Confidence 36899999999999999999999999999998763310 0 011456777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~ 144 (395)
+.+.+++.|++++.+++|.+++..+ . +.+..++.++.+|.||+|+| ..|.
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~~--~-~v~~~~g~~i~~D~vi~a~G--~~p~ 234 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGEE--R-VKVFTSGGVYQADMVILATG--IKPN 234 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecCC--C-EEEEcCCCEEEeCEEEECCC--ccCC
Confidence 7888888899999999999997643 3 21223347899999999999 4444
No 233
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=7.9e-07 Score=85.29 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=76.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+++|+.+.+. +. ...++...
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~--~d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG--TDTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC--CCHHHHHH
Confidence 4789999999999999999999999999999876331 10 11456677
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc----c--EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH----E--YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~----~--~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.+++++.+++|++++..+ +.+.++.. + +.+.+|.|++|+| .+|..
T Consensus 221 l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G--~~pn~ 278 (466)
T PRK06115 221 LQKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVLVAIG--RRPYT 278 (466)
T ss_pred HHHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEEEccC--Ccccc
Confidence 7788888899999999999998754 34444332 2 6799999999999 45543
No 234
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=1.7e-06 Score=80.48 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=74.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC----------cccccccCCc---Cce----eeecCCccccCCCCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESC----------LASLWKLKIY---DHL----QLHLPKQFCQLPYVP 72 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~----------~~g~~~~~~~---~~~----~~~~~~~~~~~~~~~ 72 (395)
.+||+|||||.||+.||...++.|.++.++-.+.. +||.-.-+.. +.+ -........++...+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 48999999999999999999999999988877632 2222111100 000 000001111111111
Q ss_pred CCCC-----CCCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCC
Q 039923 73 FPRE-----YPAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGEN 140 (395)
Q Consensus 73 ~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~ 140 (395)
...+ ...-.++..+...+++..+.. ++.++ ...|..+...+++...-|.+.. ..+.++.||++||.+
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 1111 112334556677777777654 45544 4456666654432233455555 899999999999953
No 235
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.57 E-value=7.7e-07 Score=85.86 Aligned_cols=130 Identities=19% Similarity=0.233 Sum_probs=78.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc-c-cccCCcCcee-------------------eecCC-----
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS-L-WKLKIYDHLQ-------------------LHLPK----- 63 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g-~-~~~~~~~~~~-------------------~~~~~----- 63 (395)
.+||+|||+|.||+.||..+++.|. |+|+||....+| + |....+.... +..+.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4699999999999999999999997 999999965443 1 1111000000 00000
Q ss_pred --------ccc---cCCCCCCC-----------CCCC-----CCCCHHHHHHHHHHHHHH-cCCccccCceEEEEEEcCC
Q 039923 64 --------QFC---QLPYVPFP-----------REYP-----AYPSGQQFITYMEAYANH-FEIEPLLGQEVQWAKYDAA 115 (395)
Q Consensus 64 --------~~~---~~~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~v~~~~~ 115 (395)
.++ ..++.... ...+ .-.....+.+.+.+.+.+ .+++++.++.|+.+..++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~- 159 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET- 159 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-
Confidence 000 01110000 0000 011345778888888877 589999999999987654
Q ss_pred CCcEE-EEEc--c--EEEEeCEEEEeeCCCCC
Q 039923 116 MGHWR-VKTH--E--YEFMCRWLIVATGENEV 142 (395)
Q Consensus 116 ~~~~~-v~~~--~--~~~~~d~lVlAtG~~~~ 142 (395)
+.+. +... + ..+.++.||+|||.++.
T Consensus 160 -g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 160 -GRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred -CEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 3222 3322 2 57899999999997654
No 236
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.57 E-value=1.5e-06 Score=84.84 Aligned_cols=135 Identities=16% Similarity=0.108 Sum_probs=82.0
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc-c-cccCCc-------Ccee------------eecC----
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS-L-WKLKIY-------DHLQ------------LHLP---- 62 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g-~-~~~~~~-------~~~~------------~~~~---- 62 (395)
...+||+|||+|.||+.||..+++.|.+|+|+||....+| + +....+ +... +..+
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 3458999999999999999999999999999999876543 1 100000 0000 0000
Q ss_pred -------C--ccccCCCCCCCC--------------CCC------CCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEc
Q 039923 63 -------K--QFCQLPYVPFPR--------------EYP------AYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYD 113 (395)
Q Consensus 63 -------~--~~~~~~~~~~~~--------------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~ 113 (395)
. .++..-..++.. ... .-.....+...+.+.+++.+++++.++.|+.+..+
T Consensus 94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~ 173 (541)
T PRK07804 94 SLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTD 173 (541)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEc
Confidence 0 000000001100 000 01134678888888888889999999999999765
Q ss_pred CCCC--cEEEE-----Ecc--EEEEeCEEEEeeCCCCC
Q 039923 114 AAMG--HWRVK-----THE--YEFMCRWLIVATGENEV 142 (395)
Q Consensus 114 ~~~~--~~~v~-----~~~--~~~~~d~lVlAtG~~~~ 142 (395)
++.. .+.+. ..+ ..+.++.||+|||.++.
T Consensus 174 ~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 174 GTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 4212 22232 122 57899999999997553
No 237
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.57 E-value=9e-07 Score=84.80 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc------EEEEeCEEEEeeCCCCCC
Q 039923 82 SGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVP 143 (395)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~------~~~~~d~lVlAtG~~~~~ 143 (395)
+...+...+.+.+.+.|++++++++|++++..++ +.|.+++.+ .++++++||+|+|.++..
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~ 242 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP 242 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence 3345666777777788999999999999987643 456665431 369999999999987643
No 238
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.54 E-value=1.3e-06 Score=77.38 Aligned_cols=148 Identities=18% Similarity=0.284 Sum_probs=108.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++++|||||..|+..+.-..+.|.+||++|-.+.+++. ...++...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---------------------------------mD~Eisk~ 257 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---------------------------------MDGEISKA 257 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---------------------------------cCHHHHHH
Confidence 478999999999999999999999999999998877642 33688888
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc------EEEEeCEEEEeeCCCCCCCCCCC----CCCC-CCcccE
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVPVLPKI----PGIS-EFRGRL 158 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~------~~~~~d~lVlAtG~~~~~~~p~~----~g~~-~~~~~~ 158 (395)
+++.+.+.++.+.++++|..++...+ +.+.++..+ .++++|.|.+|+| -+|..-.+ -|++ ++.+.+
T Consensus 258 ~qr~L~kQgikF~l~tkv~~a~~~~d-g~v~i~ve~ak~~k~~tle~DvlLVsiG--RrP~t~GLgle~iGi~~D~r~rv 334 (506)
T KOG1335|consen 258 FQRVLQKQGIKFKLGTKVTSATRNGD-GPVEIEVENAKTGKKETLECDVLLVSIG--RRPFTEGLGLEKIGIELDKRGRV 334 (506)
T ss_pred HHHHHHhcCceeEeccEEEEeeccCC-CceEEEEEecCCCceeEEEeeEEEEEcc--CcccccCCChhhcccccccccce
Confidence 89999999999999999999999875 366666654 7899999999999 45544321 1111 111111
Q ss_pred eecCCCCCCcCCCCCeEEEECCCcCHHHHHHHHhhCCCe
Q 039923 159 LHTSTYKNGVEFRASKVLVVGCGNSGMEISFDLCKNGAQ 197 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~ 197 (395)
..-.+ ....-.++-.||-=..|..+|...-+.|..
T Consensus 335 ~v~~~----f~t~vP~i~~IGDv~~gpMLAhkAeeegI~ 369 (506)
T KOG1335|consen 335 IVNTR----FQTKVPHIYAIGDVTLGPMLAHKAEEEGIA 369 (506)
T ss_pred ecccc----ccccCCceEEecccCCcchhhhhhhhhchh
Confidence 11111 122456788899877787888777776654
No 239
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.54 E-value=6.3e-07 Score=85.31 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=74.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~---------------------------------~~d~~~~~~ 194 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK---------------------------------LMDADMNQP 194 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch---------------------------------hcCHHHHHH
Confidence 36899999999999999999999999999998763321 012456677
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.|++++.+++|++++. .. +++.+ +.+.+|.|++|+| .+|..
T Consensus 195 l~~~l~~~gI~i~~~~~v~~i~~----~~--v~~~~g~~~~~D~vl~a~G--~~pn~ 243 (438)
T PRK13512 195 ILDELDKREIPYRLNEEIDAING----NE--VTFKSGKVEHYDMIIEGVG--THPNS 243 (438)
T ss_pred HHHHHHhcCCEEEECCeEEEEeC----CE--EEECCCCEEEeCEEEECcC--CCcCh
Confidence 77888888999999999999863 22 55544 6799999999999 45543
No 240
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.54 E-value=1.2e-06 Score=84.62 Aligned_cols=97 Identities=20% Similarity=0.115 Sum_probs=75.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITYM 90 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (395)
.+++|||||+.|+.+|..|++.|.+|+++++.. +. + ....++.+.+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~--~~d~~~~~~l 228 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PL-------------------------------R--GFDRQCSEKV 228 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-cc-------------------------------c--cCCHHHHHHH
Confidence 589999999999999999999999999998642 10 0 1124567777
Q ss_pred HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 91 EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
.+.+++.+++++.++.+..++..+ ..+.+.+.+ +++.+|.|++|+| .+|..
T Consensus 229 ~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~~~~g~~i~~D~vl~a~G--~~pn~ 280 (499)
T PTZ00052 229 VEYMKEQGTLFLEGVVPINIEKMD--DKIKVLFSDGTTELFDTVLYATG--RKPDI 280 (499)
T ss_pred HHHHHHcCCEEEcCCeEEEEEEcC--CeEEEEECCCCEEEcCEEEEeeC--CCCCc
Confidence 888888899999999998888755 344465544 6789999999999 45554
No 241
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.54 E-value=1.2e-06 Score=84.23 Aligned_cols=97 Identities=13% Similarity=0.048 Sum_probs=75.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITYM 90 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (395)
.+++|||||+.|+.+|..|.+.|.+|+++++.. +. + ....++.+.+
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~--~~d~~~~~~l 226 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------R--GFDQDCANKV 226 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cc-------------------------------c--ccCHHHHHHH
Confidence 579999999999999999999999999998742 11 0 1125677788
Q ss_pred HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc----EEEEeCEEEEeeCCCCCCCC
Q 039923 91 EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE----YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~----~~~~~d~lVlAtG~~~~~~~ 145 (395)
.+.+++.|++++.++.+.+++..+ +.+.++..+ +++.+|.|++|+| ..|..
T Consensus 227 ~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~~~~~~~i~~D~vl~a~G--~~pn~ 281 (484)
T TIGR01438 227 GEHMEEHGVKFKRQFVPIKVEQIE--AKVKVTFTDSTNGIEEEYDTVLLAIG--RDACT 281 (484)
T ss_pred HHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEecCCcceEEEeCEEEEEec--CCcCC
Confidence 888888899999999998888765 344455432 4799999999999 45543
No 242
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.54 E-value=1.3e-06 Score=83.42 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=74.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++++|||||+.|+.+|..|.+.|.+|++|++.+.+.. ....++...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~---------------------------------~~d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR---------------------------------HLDEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc---------------------------------ccCHHHHHH
Confidence 46899999999999999999999999999998763210 011344555
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+..+ .+++++.+++|++++..+ +.+.+++.+ +++.+|.|++|+| .+|..
T Consensus 216 l~~~~~-~gI~i~~~~~V~~i~~~~--~~v~v~~~~g~~i~~D~vl~a~G--~~pn~ 267 (452)
T TIGR03452 216 FTEIAK-KKWDIRLGRNVTAVEQDG--DGVTLTLDDGSTVTADVLLVATG--RVPNG 267 (452)
T ss_pred HHHHHh-cCCEEEeCCEEEEEEEcC--CeEEEEEcCCCEEEcCEEEEeec--cCcCC
Confidence 555443 478999999999998765 445566554 6899999999999 45554
No 243
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.53 E-value=7.5e-07 Score=90.64 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=78.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++++|||||+.|+.+|..|.+.|.+|+|+++.+.+.. .....+....
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~--------------------------------~~ld~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA--------------------------------EQLDQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh--------------------------------hhcCHHHHHH
Confidence 35799999999999999999999999999998763210 0112556677
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.|++++.++.++++..........+++.+ +++.+|.||+|+| .+|..
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTG--IRPQD 247 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCC--cccCc
Confidence 888888899999999999999764322344466655 7899999999999 45553
No 244
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=2.6e-06 Score=83.89 Aligned_cols=37 Identities=32% Similarity=0.335 Sum_probs=33.5
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESC 44 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~ 44 (395)
...+||||||+|.||+.||..+++.|.+|+||||...
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 3457999999999999999999999999999999753
No 245
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.53 E-value=1.7e-06 Score=85.19 Aligned_cols=40 Identities=28% Similarity=0.500 Sum_probs=36.3
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
+..+||||||+|++|+++|..++++|.+|+|+||....||
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 3468999999999999999999999999999999987665
No 246
>PRK12839 hypothetical protein; Provisional
Probab=98.53 E-value=3.4e-06 Score=82.66 Aligned_cols=40 Identities=35% Similarity=0.464 Sum_probs=36.3
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL 48 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~ 48 (395)
..+||+|||+|.+|+++|..+++.|.+|+|||+...+||.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 3589999999999999999999999999999998777653
No 247
>PTZ00058 glutathione reductase; Provisional
Probab=98.52 E-value=1.6e-06 Score=84.29 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=77.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~--~~d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------R--KFDETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------c--cCCHHHHHH
Confidence 4689999999999999999999999999999876321 0 012566777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEc-c-EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTH-E-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~-~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.|++++.+++|.+++..++ +.+.+... + +++.+|.|++|+| ..|..
T Consensus 284 l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~~~~~i~aD~VlvA~G--r~Pn~ 338 (561)
T PTZ00058 284 LENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSDGRKYEHFDYVIYCVG--RSPNT 338 (561)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECCCCEEEECCEEEECcC--CCCCc
Confidence 77888888999999999999986542 23444433 3 6899999999999 45543
No 248
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.51 E-value=4.6e-06 Score=79.78 Aligned_cols=42 Identities=26% Similarity=0.257 Sum_probs=37.3
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc----CCCEEEEecCCCcccccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKER----GVPSLIIEKESCLASLWK 50 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~----g~~v~lie~~~~~~g~~~ 50 (395)
...+++|||||++||+||.+|.+. |.+|+|+|+.+.+||..+
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 457999999999999999999996 579999999999988543
No 249
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.51 E-value=1.8e-06 Score=82.86 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=75.1
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITYM 90 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (395)
.+|+|||||+.|+.+|..|.+.|.+|+|+|+.+.+. +. ...++.+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~~ 221 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PA--ADKDIVKVF 221 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999876432 10 125566777
Q ss_pred HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-----EEEEeCEEEEeeCCCCCCCC
Q 039923 91 EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-----YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-----~~~~~d~lVlAtG~~~~~~~ 145 (395)
.+.+++. ++++.+++|+.++..+ +.+.++..+ .++.+|.||+|+| .+|..
T Consensus 222 ~~~l~~~-v~i~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~i~~D~vi~a~G--~~pn~ 276 (471)
T PRK06467 222 TKRIKKQ-FNIMLETKVTAVEAKE--DGIYVTMEGKKAPAEPQRYDAVLVAVG--RVPNG 276 (471)
T ss_pred HHHHhhc-eEEEcCCEEEEEEEcC--CEEEEEEEeCCCcceEEEeCEEEEeec--ccccC
Confidence 7777776 8899999999998765 444454432 4699999999999 45554
No 250
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.51 E-value=1.9e-06 Score=81.65 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=32.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
.+||||||+|.||++||..+. .|.+|+|+||....++
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 479999999999999999984 7999999999876554
No 251
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.50 E-value=4e-07 Score=83.94 Aligned_cols=36 Identities=33% Similarity=0.403 Sum_probs=33.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL 45 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~ 45 (395)
+.||+|||||++|+.+|..|+++|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 479999999999999999999999999999986544
No 252
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.50 E-value=1.8e-06 Score=82.89 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=76.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKER---GVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQF 86 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~---g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.++++|||||+.|+.+|..+... |.+|+|+++.+.+. + ....++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~--~~d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------R--GFDSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------c--ccCHHH
Confidence 36899999999999999766554 89999999876432 0 012567
Q ss_pred HHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 87 ITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
.+.+.+.+++.+++++.++.|++++..++ +...+++.+ .++.+|.|++|+| .+|..
T Consensus 234 ~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~~v~~~~g~~i~~D~vl~a~G--~~Pn~ 290 (486)
T TIGR01423 234 RKELTKQLRANGINIMTNENPAKVTLNAD-GSKHVTFESGKTLDVDVVMMAIG--RVPRT 290 (486)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceEEEEEcCCCEEEcCEEEEeeC--CCcCc
Confidence 78888888888999999999999987543 334455544 6899999999999 45543
No 253
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=2.6e-06 Score=84.52 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=33.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL 45 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~ 45 (395)
..+||+|||||.||++||..+++.|.+|+|+||...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3579999999999999999999999999999986554
No 254
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.50 E-value=1.6e-07 Score=90.32 Aligned_cols=49 Identities=31% Similarity=0.389 Sum_probs=41.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCcee
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQ 58 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~ 58 (395)
++||||||||++||+||..|++.|++|+|+||+..+||..+...+.+.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~ 51 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFR 51 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceE
Confidence 5899999999999999999999999999999999999955544333333
No 255
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=2e-06 Score=84.54 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=33.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA 46 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~ 46 (395)
.+||||||+|.||++||..+++.|.+|+|+||....+
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~ 43 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTR 43 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 5799999999999999999999999999999985443
No 256
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=1.3e-06 Score=85.91 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=78.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCccc--ccccCCcCc----ee-eecCC-----------cc----
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERG--VPSLIIEKESCLAS--LWKLKIYDH----LQ-LHLPK-----------QF---- 65 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g--~~v~lie~~~~~~g--~~~~~~~~~----~~-~~~~~-----------~~---- 65 (395)
.+||+|||||.||++||..+++.| .+|+|+||....++ .+....... .. .+.+. ..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 369999999999999999999874 79999999865443 111100000 00 00000 00
Q ss_pred ------------------ccCCCCCCCCC----------------CCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEE
Q 039923 66 ------------------CQLPYVPFPRE----------------YPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAK 111 (395)
Q Consensus 66 ------------------~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~ 111 (395)
...++...... ...-.....+...+.+.+.+.+++++.++.|+.+.
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~ 162 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLI 162 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEE
Confidence 00000000000 00111345677888888888899999999999986
Q ss_pred EcCCCCcEE----EEEcc---EEEEeCEEEEeeCCCCC
Q 039923 112 YDAAMGHWR----VKTHE---YEFMCRWLIVATGENEV 142 (395)
Q Consensus 112 ~~~~~~~~~----v~~~~---~~~~~d~lVlAtG~~~~ 142 (395)
.++ +.+. +...+ ..+.++.||+|||.++.
T Consensus 163 ~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 163 LED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred EEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 543 3211 12222 46899999999997654
No 257
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.49 E-value=4.9e-07 Score=86.71 Aligned_cols=58 Identities=21% Similarity=0.420 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcC-CccccCceEEEEEEcCCCCcEEEEEc----c--EEEEeCEEEEeeCCCCCC
Q 039923 85 QFITYMEAYANHFE-IEPLLGQEVQWAKYDAAMGHWRVKTH----E--YEFMCRWLIVATGENEVP 143 (395)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~~~~~V~~v~~~~~~~~~~v~~~----~--~~~~~d~lVlAtG~~~~~ 143 (395)
.+...+.+.+++.+ ++++++++|+.++..++ +.|.+++. + .++.+++||+|+|.++..
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 55666677777776 79999999999987653 44766643 2 369999999999987643
No 258
>PRK08275 putative oxidoreductase; Provisional
Probab=98.48 E-value=3.5e-06 Score=82.56 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=79.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCcc-cccccC--CcCc-ee--eecCCcc---------------
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKER--GVPSLIIEKESCLA-SLWKLK--IYDH-LQ--LHLPKQF--------------- 65 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~--g~~v~lie~~~~~~-g~~~~~--~~~~-~~--~~~~~~~--------------- 65 (395)
..+||||||||.||++||..+++. |.+|+|+||....+ |..... .... +. ...+..+
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 458999999999999999999987 68999999987532 221100 0000 00 0000000
Q ss_pred ---------------ccCCCCCCCC---C---------CC----CCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcC
Q 039923 66 ---------------CQLPYVPFPR---E---------YP----AYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDA 114 (395)
Q Consensus 66 ---------------~~~~~~~~~~---~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~ 114 (395)
+..-..++.. + .. .......+.+.+...+.+.++++..++.|+.+..++
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~ 167 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA 167 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence 0000000000 0 00 011345678888888888899999999999997652
Q ss_pred CCCcEEEE---Ecc---EEEEeCEEEEeeCCCCC
Q 039923 115 AMGHWRVK---THE---YEFMCRWLIVATGENEV 142 (395)
Q Consensus 115 ~~~~~~v~---~~~---~~~~~d~lVlAtG~~~~ 142 (395)
+....-+. ..+ ..+.++.||+|||..+.
T Consensus 168 ~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 168 DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 21221121 222 46899999999996543
No 259
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.48 E-value=2.3e-06 Score=82.16 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP---------------------------------LEDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------------------------chhHHHHHH
Confidence 36899999999999999999999999999998763320 012567777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE--cc-EEEEeCEEEEeeCCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT--HE-YEFMCRWLIVATGENEVPVLP 146 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~--~~-~~~~~d~lVlAtG~~~~~~~p 146 (395)
+.+.+++. ++++.+++|.+++..++ ..++++. .+ .++.+|.|++|+| ..|...
T Consensus 216 ~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G--~~p~~~ 271 (460)
T PRK06292 216 AQKILSKE-FKIKLGAKVTSVEKSGD-EKVEELEKGGKTETIEADYVLVATG--RRPNTD 271 (460)
T ss_pred HHHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEEEcCCceEEEEeCEEEEccC--CccCCC
Confidence 78888887 99999999999987542 2444432 22 6799999999999 555554
No 260
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.46 E-value=1.1e-06 Score=89.45 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=76.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++++|||||+.|+.+|..|.+.|.+|+|+++.+.+.. . .........
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------------------~-~ld~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------------------K-QLDQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------------------h-hcCHHHHHH
Confidence 36899999999999999999999999999998753210 0 012455666
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.|++++.++.++++.... ....+++.+ +++.+|.||+|+| .+|..
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~--~~~~v~~~dG~~i~~D~Vi~a~G--~~Pn~ 240 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGAT--KADRIRFKDGSSLEADLIVMAAG--IRPND 240 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCC--ceEEEEECCCCEEEcCEEEECCC--CCcCc
Confidence 7777888899999999998887543 334466655 7899999999999 45543
No 261
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.46 E-value=5.2e-07 Score=81.11 Aligned_cols=37 Identities=35% Similarity=0.563 Sum_probs=33.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA 46 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~ 46 (395)
+.+|+|||||.+|+++|..|+++|++|+|+|+...+-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 4789999999999999999999999999999986553
No 262
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.46 E-value=3.8e-06 Score=82.72 Aligned_cols=129 Identities=23% Similarity=0.199 Sum_probs=76.7
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc-c-cccCCc----------Ccee------------eecC-----
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS-L-WKLKIY----------DHLQ------------LHLP----- 62 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g-~-~~~~~~----------~~~~------------~~~~----- 62 (395)
||||||||.+|++||..+++.|.+|+|+||....++ + +..... +... +..+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 799999999999999999999999999999865432 1 110000 0000 0000
Q ss_pred ------C--ccc---cCCCCCCCCC----------------CCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCC
Q 039923 63 ------K--QFC---QLPYVPFPRE----------------YPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAA 115 (395)
Q Consensus 63 ------~--~~~---~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~ 115 (395)
. .++ ..++...+.. +..-.....+...+.+.+.+.+++++.++.++.+..++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~- 159 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD- 159 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-
Confidence 0 000 0000000000 00011234567777777777899999999999997654
Q ss_pred CCcEE-E---EEcc---EEEEeCEEEEeeCCCCC
Q 039923 116 MGHWR-V---KTHE---YEFMCRWLIVATGENEV 142 (395)
Q Consensus 116 ~~~~~-v---~~~~---~~~~~d~lVlAtG~~~~ 142 (395)
+.+. + ...+ ..+.++.||+|||.++.
T Consensus 160 -g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 160 -GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred -CEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 3321 1 1122 46899999999996543
No 263
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.46 E-value=6.3e-06 Score=81.04 Aligned_cols=39 Identities=28% Similarity=0.527 Sum_probs=35.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
...||||||+|.+|+++|+.+++.|.+|+|+||....||
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 358999999999999999999999999999999987665
No 264
>PRK07208 hypothetical protein; Provisional
Probab=98.45 E-value=5.4e-07 Score=87.08 Aligned_cols=48 Identities=33% Similarity=0.550 Sum_probs=41.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDH 56 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~ 56 (395)
.++||+|||||++|+++|+.|.++|++|+|+|+.+.+||.++.....+
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g 50 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG 50 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC
Confidence 457899999999999999999999999999999999999765543433
No 265
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.44 E-value=2e-06 Score=81.38 Aligned_cols=101 Identities=26% Similarity=0.318 Sum_probs=80.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++++|||+|+.|+.+|..|+++|++|+++|+.+.+++.. .. ..+.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~-------------------------------~~-~~~~~~ 183 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL-------------------------------LD-PEVAEE 183 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh-------------------------------hh-HHHHHH
Confidence 4789999999999999999999999999999998665311 00 577888
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEE-EEE-ccEEEEeCEEEEeeCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWR-VKT-HEYEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~-v~~-~~~~~~~d~lVlAtG~~~~~~ 144 (395)
+.+..++++++++.++.+..++...+....+ +.. ....+.+|.+++++| .+|.
T Consensus 184 ~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g--~~p~ 238 (415)
T COG0446 184 LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPG--ERPN 238 (415)
T ss_pred HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeec--cccc
Confidence 8889999999999999999999876321221 233 338899999999999 4553
No 266
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.43 E-value=1.1e-05 Score=79.59 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=36.3
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
...+||+|||+|.+|+++|..+.++|.+|+||||...+||
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 3468999999999999999999999999999999876665
No 267
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.43 E-value=3e-06 Score=83.97 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=34.3
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA 46 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~ 46 (395)
..+||||||+|.||++||..+++.|.+|+|+||....+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 45899999999999999999999999999999986443
No 268
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.43 E-value=4.2e-06 Score=82.05 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=34.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA 46 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~ 46 (395)
..+||||||+|.||++||..+++.|.+|+|+||....+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~ 41 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTR 41 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 34799999999999999999999999999999986443
No 269
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.42 E-value=3.5e-06 Score=82.98 Aligned_cols=39 Identities=33% Similarity=0.445 Sum_probs=34.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcC---CCEEEEecCCCccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERG---VPSLIIEKESCLAS 47 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g---~~v~lie~~~~~~g 47 (395)
..+||+|||||.||++||..+++.| .+|+|+||....++
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 3479999999999999999999998 89999999875544
No 270
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=3.3e-07 Score=87.29 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=37.7
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
...++|+|||||+|||+||++|...|++|+|+|.++.+||
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 3457999999999999999999999999999999999998
No 271
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.41 E-value=4.7e-06 Score=82.32 Aligned_cols=101 Identities=19% Similarity=0.134 Sum_probs=75.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
..+|+|||||+.|+.+|..|.+.|.+|+++|+.+.+.. ....++.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~---------------------------------~~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP---------------------------------LLDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc---------------------------------cCCHHHHHH
Confidence 36899999999999999999999999999999764321 012456666
Q ss_pred HHHHH-HHcCCccccCceEEEEEEcCCCCcEEEEEcc----------------EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYA-NHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE----------------YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~-~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~----------------~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.. ++.+++++.++.|++++..++...+.+.+.+ +++.+|.|++|+| -+|..
T Consensus 359 l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG--r~Pnt 429 (659)
T PTZ00153 359 FERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG--RKPNT 429 (659)
T ss_pred HHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC--cccCC
Confidence 66654 5679999999999999876532234454321 2799999999999 45554
No 272
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.40 E-value=1e-06 Score=81.72 Aligned_cols=39 Identities=10% Similarity=-0.064 Sum_probs=34.3
Q ss_pred CCCCCeEEEEecccccc--cchhhHHHHHHHHHhhhccccc
Q 039923 351 KGKNGVYSVGFARQGLL--GISMDAHKVADDIASQWNSETR 389 (395)
Q Consensus 351 ~~~~~iya~Gd~~~~~~--~a~~~g~~~a~~i~~~~~~~~~ 389 (395)
...+|||++|=+.+... .|..||..++-|.+..+.+++.
T Consensus 327 k~~~~lf~AGQi~G~~GY~Eaaa~Gl~agina~~~~~~~~~ 367 (433)
T TIGR00137 327 KDRQTLFFAGQLTGVEGYVASTAGGWLAGINAARLALGEPL 367 (433)
T ss_pred CCCCCEEECcccccchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 36799999999988877 9999999999999999987654
No 273
>PLN02546 glutathione reductase
Probab=98.40 E-value=4.7e-06 Score=81.08 Aligned_cols=100 Identities=17% Similarity=0.093 Sum_probs=76.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++...
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~---------------------------------~~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR---------------------------------GFDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc---------------------------------ccCHHHHHH
Confidence 46899999999999999999999999999998763220 012566777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEE-EEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYE-FMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~-~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.|++++.++++.+++..++ +.+.+.+.+.+ ..+|.||+|+| ..|..
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v~v~~~~g~~~~~D~Viva~G--~~Pnt 352 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSAD-GSLSLKTNKGTVEGFSHVMFATG--RKPNT 352 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCC-CEEEEEECCeEEEecCEEEEeec--cccCC
Confidence 77888888999999999999976543 44445555544 44899999999 45544
No 274
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.39 E-value=4.7e-06 Score=81.93 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=33.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERG--VPSLIIEKESCLAS 47 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g--~~v~lie~~~~~~g 47 (395)
..+||+|||||.||++||..+++.| .+|+|+||....++
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 3579999999999999999999874 79999999865544
No 275
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.36 E-value=2.9e-06 Score=82.76 Aligned_cols=39 Identities=31% Similarity=0.390 Sum_probs=34.0
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
+..+||||||+|.||++||..+. .|.+|+|+||....+|
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 44589999999999999999996 5999999999876554
No 276
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=6.4e-06 Score=80.59 Aligned_cols=132 Identities=20% Similarity=0.176 Sum_probs=78.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC-cccc--cccCCc-------Ccee------------eecC----
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESC-LASL--WKLKIY-------DHLQ------------LHLP---- 62 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~-~~g~--~~~~~~-------~~~~------------~~~~---- 62 (395)
..+||||||+|.||++||..+ +.|.+|+|+||... .||. +....+ +... +..+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 457999999999999999999 89999999999753 3431 111000 0000 0000
Q ss_pred -------C--ccccCCCCCCC---C--------C---CC-----CCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcC
Q 039923 63 -------K--QFCQLPYVPFP---R--------E---YP-----AYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDA 114 (395)
Q Consensus 63 -------~--~~~~~~~~~~~---~--------~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~ 114 (395)
. .++..-..++. + . ++ .-.....+...+...+.+.+++++.++.++.+..++
T Consensus 85 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~ 164 (543)
T PRK06263 85 ILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDE 164 (543)
T ss_pred HHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC
Confidence 0 00000000110 0 0 00 001245677778887878899999999999987654
Q ss_pred CCCcEEEE--E-cc---EEEEeCEEEEeeCCCC
Q 039923 115 AMGHWRVK--T-HE---YEFMCRWLIVATGENE 141 (395)
Q Consensus 115 ~~~~~~v~--~-~~---~~~~~d~lVlAtG~~~ 141 (395)
+....-+. . .+ ..+.++.||+|||..+
T Consensus 165 ~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 165 NREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 21122122 1 22 4789999999999644
No 277
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=1.1e-05 Score=79.54 Aligned_cols=59 Identities=12% Similarity=0.002 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHcCCccccCceEEEEEEcCC---CCc--EEE-EEcc---EEEEeCEEEEeeCCCC
Q 039923 83 GQQFITYMEAYANHFEIEPLLGQEVQWAKYDAA---MGH--WRV-KTHE---YEFMCRWLIVATGENE 141 (395)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~---~~~--~~v-~~~~---~~~~~d~lVlAtG~~~ 141 (395)
...+.+.+.+.+.+.++++..++.|+.+..+++ ... +.. ...+ ..+.++.||+|||..+
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 456788888888888999999999999865431 121 111 1122 4789999999999655
No 278
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.34 E-value=3.9e-06 Score=79.56 Aligned_cols=90 Identities=19% Similarity=0.184 Sum_probs=71.2
Q ss_pred CCeEEECCChHHHHHHHHHHH--------------cCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKE--------------RGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPRE 76 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~--------------~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (395)
.+|+|||||+.|+.+|..|.+ .+.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 479999999999999999976 367899999876331
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCC
Q 039923 77 YPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGE 139 (395)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~ 139 (395)
+. ....+.+.+.+.+++.|++++.+++|.+++.+ . +.+++ +++.+|.+|.|+|.
T Consensus 224 -~~--~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~--v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 224 -GS--FDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----E--VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred -cc--CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----E--EEECCCCEEEccEEEEccCC
Confidence 10 12467788888889999999999999988642 2 55554 78999999999995
No 279
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.34 E-value=1.6e-06 Score=76.89 Aligned_cols=34 Identities=35% Similarity=0.475 Sum_probs=32.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKE 42 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~ 42 (395)
...||+|||||.+|.++|+.|++.|.+|++|||+
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3589999999999999999999999999999998
No 280
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.33 E-value=6e-06 Score=81.04 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=33.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKER--GVPSLIIEKESCLAS 47 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~--g~~v~lie~~~~~~g 47 (395)
.+||+|||||.||+.||..+++. |.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999987 579999999876554
No 281
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.32 E-value=1.1e-05 Score=85.45 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=36.7
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
+...||||||+|.||++||..+++.|.+|+|+||....||
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 3458999999999999999999999999999999987776
No 282
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.31 E-value=1.3e-05 Score=79.00 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=33.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA 46 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~ 46 (395)
+.||||||+|.||++||..+++.|.+|+|+||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 3599999999999999999999999999999986543
No 283
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.31 E-value=9.4e-06 Score=74.28 Aligned_cols=39 Identities=38% Similarity=0.477 Sum_probs=36.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
...||+|||+|.+||.+|+.|.+.|++|+|+|.++.+||
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 357999999999999999999999999999999988876
No 284
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.29 E-value=1.3e-05 Score=78.57 Aligned_cols=39 Identities=28% Similarity=0.507 Sum_probs=35.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
...||+|||+|++|+++|..+++.|.+|+||||...+||
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 358999999999999999999999999999999877664
No 285
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.29 E-value=1.3e-05 Score=73.69 Aligned_cols=58 Identities=24% Similarity=0.444 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEcc------EEEEeCEEEEeeCCCCCC
Q 039923 85 QFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVP 143 (395)
Q Consensus 85 ~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~~------~~~~~d~lVlAtG~~~~~ 143 (395)
.+.+.+-+.+.+. +.+++++++|+.+++.++ +.|.|+..+ +.+.+++|++..|..+-+
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 3444444445554 889999999999999874 679998743 899999999999965433
No 286
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.29 E-value=5.3e-06 Score=80.36 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=32.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
.+||||||+|.||+.||..+++ |.+|+|+||....+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4799999999999999999976 999999999876554
No 287
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.29 E-value=2.3e-05 Score=76.62 Aligned_cols=38 Identities=39% Similarity=0.580 Sum_probs=35.3
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
..+||||||+| +|+++|..+++.|.+|+|+||.+.+||
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 36899999999 899999999999999999999987777
No 288
>PLN02576 protoporphyrinogen oxidase
Probab=98.29 E-value=1.7e-06 Score=84.07 Aligned_cols=44 Identities=34% Similarity=0.389 Sum_probs=39.4
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCccccccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKER-GVPSLIIEKESCLASLWKL 51 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~-g~~v~lie~~~~~~g~~~~ 51 (395)
..++||+|||||++||++|++|.+. |++|+|+|+.+.+||..+.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 3457999999999999999999999 9999999999999995444
No 289
>PLN02815 L-aspartate oxidase
Probab=98.28 E-value=7.9e-06 Score=80.16 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=34.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
..+||||||+|.||++||..+++.| +|+|+||....+|
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 3479999999999999999999999 9999999876554
No 290
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.28 E-value=2.9e-05 Score=76.45 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=35.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL 48 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~ 48 (395)
.+||+|||+|.+|+++|..+++.|.+|+|+|+...+||.
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~ 54 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT 54 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence 479999999999999999999999999999998777663
No 291
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.27 E-value=1e-06 Score=84.59 Aligned_cols=45 Identities=27% Similarity=0.348 Sum_probs=39.0
Q ss_pred CCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCcccccccCCcC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERG--VPSLIIEKESCLASLWKLKIYD 55 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g--~~v~lie~~~~~~g~~~~~~~~ 55 (395)
++|+|||||++|++||+.|++.| ++|+|+|+.+.+||..+.....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~ 47 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKD 47 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeC
Confidence 36999999999999999999988 8999999999999965554333
No 292
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.27 E-value=1.1e-05 Score=76.93 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcE-EEEEc-c-EEEEeCEEEEeeCCCC
Q 039923 83 GQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHW-RVKTH-E-YEFMCRWLIVATGENE 141 (395)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~-~v~~~-~-~~~~~d~lVlAtG~~~ 141 (395)
...+.+.+.+.+++.+++++++++|+.+..+++++.+ -+... + ..+.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 4567888888899999999999999999765311322 23332 2 6899999999999543
No 293
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.26 E-value=1.3e-05 Score=79.04 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=30.8
Q ss_pred eEEECCChHHHHHHHHHHHcCCCEEEEecCCCc
Q 039923 13 PVIVGAGPSGLAAAACLKERGVPSLIIEKESCL 45 (395)
Q Consensus 13 vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~ 45 (395)
|||||+|.||++||..+++.|.+|+|+||...+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 799999999999999999999999999998733
No 294
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.26 E-value=2.8e-05 Score=76.20 Aligned_cols=38 Identities=34% Similarity=0.561 Sum_probs=35.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
.+||+|||+|.+|+++|..+++.|.+|+|||+....||
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 58999999999999999999999999999999876665
No 295
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.26 E-value=1.8e-05 Score=78.81 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=33.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCL 45 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~ 45 (395)
..+||||||||.||+.||..+++.|.+|+|+||....
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 3579999999999999999999999999999997644
No 296
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.24 E-value=1.6e-06 Score=83.41 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=38.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHc----CCCEEEEecCCCccccccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKER----GVPSLIIEKESCLASLWKL 51 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~----g~~v~lie~~~~~~g~~~~ 51 (395)
++||+|||||++|+++|+.|.++ |++|+|+|+.+.+||..+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 47899999999999999999999 9999999999999995544
No 297
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.23 E-value=9e-06 Score=74.56 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=84.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
...|+++|+|..|+.+|..|.....+|++|++++..- + -.....+.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~--------~------------------------~lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL--------P------------------------RLFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch--------h------------------------hhhhHHHHHH
Confidence 4569999999999999999999999999999986221 0 0123566777
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVLPKIP 149 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~p~~~ 149 (395)
...+.++.+++++.++.+.+++..++.....|.+.+ .++.+|.||+.+| .+|....+.
T Consensus 261 ~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeec--ccccccccc
Confidence 788888889999999999999888764555566666 8999999999999 677665443
No 298
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.23 E-value=1.3e-05 Score=68.62 Aligned_cols=46 Identities=26% Similarity=0.262 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCCeEEECCChHHHHHHHHHHHcC------CCEEEEecCCCcc
Q 039923 1 MSSKAKRFWTPGPVIVGAGPSGLAAAACLKERG------VPSLIIEKESCLA 46 (395)
Q Consensus 1 m~~~~~~~~~~~vvIIG~G~aG~~~A~~l~~~g------~~v~lie~~~~~~ 46 (395)
|+...+....++|+|+|||+.|+.+|++|.+++ ++|+|||...-.|
T Consensus 1 p~~T~r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 1 PSATSREGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred CccccccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 344445555689999999999999999999987 7999999985443
No 299
>PLN02268 probable polyamine oxidase
Probab=98.22 E-value=1.7e-06 Score=82.46 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=36.0
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL 48 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~ 48 (395)
++|+|||||.+|++||+.|.+.|++|+|+|+++.+||-
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 47999999999999999999999999999999999984
No 300
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.21 E-value=1.7e-05 Score=77.93 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=30.5
Q ss_pred CeEEECCChHHHHHHHHHH----HcCCCEEEEecCCC
Q 039923 12 GPVIVGAGPSGLAAAACLK----ERGVPSLIIEKESC 44 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~----~~g~~v~lie~~~~ 44 (395)
||||||||.||+.||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999753
No 301
>PRK10262 thioredoxin reductase; Provisional
Probab=98.21 E-value=1.1e-05 Score=73.57 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 3689999999999999999999999999999875211 01334566
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCC-CcEEEEEc---c--EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAM-GHWRVKTH---E--YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~-~~~~v~~~---~--~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+++.+++++.++.+++++..+.. ..+++... + +++.+|.||+|+| ..|..
T Consensus 191 ~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G--~~p~~ 250 (321)
T PRK10262 191 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG--HSPNT 250 (321)
T ss_pred HHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeC--CccCh
Confidence 667777789999999999999765311 12223221 1 5799999999999 45443
No 302
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.21 E-value=1.7e-05 Score=76.87 Aligned_cols=35 Identities=37% Similarity=0.521 Sum_probs=31.1
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESC 44 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~ 44 (395)
+...||+|||+|.||+.||..++ +.+|+|+||...
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 44589999999999999999997 579999999875
No 303
>PLN02676 polyamine oxidase
Probab=98.20 E-value=2.8e-06 Score=81.66 Aligned_cols=49 Identities=33% Similarity=0.495 Sum_probs=41.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCcccccccCCcCce
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHL 57 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~-~v~lie~~~~~~g~~~~~~~~~~ 57 (395)
..+||+|||||++|+++|++|.+.|. +|+|+|+...+||.+....+++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~ 74 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGV 74 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCe
Confidence 45899999999999999999999998 69999999999996655444433
No 304
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.20 E-value=3.8e-05 Score=75.01 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=34.2
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
...+||||||+|.||++||..+++. .+|+|+||....+|
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 3458999999999999999999886 89999999876555
No 305
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.20 E-value=2.4e-06 Score=78.58 Aligned_cols=41 Identities=29% Similarity=0.346 Sum_probs=37.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWK 50 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~ 50 (395)
++||+|||||++|+++|.+|++.|.+|+|+|+...+||...
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcee
Confidence 36999999999999999999999999999999999998433
No 306
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.19 E-value=2.7e-06 Score=82.47 Aligned_cols=39 Identities=33% Similarity=0.466 Sum_probs=36.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccc
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLW 49 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~ 49 (395)
+||+|||||++|++||..|++.|++|+|+|++..+||..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 689999999999999999999999999999999999843
No 307
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.18 E-value=2.2e-06 Score=79.89 Aligned_cols=48 Identities=27% Similarity=0.402 Sum_probs=42.1
Q ss_pred CeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCcccccccCCcCceee
Q 039923 12 GPVIVGAGPSGLAAAACLKERG--VPSLIIEKESCLASLWKLKIYDHLQL 59 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g--~~v~lie~~~~~~g~~~~~~~~~~~~ 59 (395)
+|+|||||++||++|++|.+++ .+++|+|+.+.+||..+.....+..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~ 51 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLF 51 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEE
Confidence 6899999999999999999999 89999999999999887765554443
No 308
>PRK07233 hypothetical protein; Provisional
Probab=98.17 E-value=2.2e-06 Score=81.83 Aligned_cols=38 Identities=39% Similarity=0.476 Sum_probs=35.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccc
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLW 49 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~ 49 (395)
+|+|||||++||+||+.|++.|++|+|+|+.+.+||..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 68999999999999999999999999999999999854
No 309
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.16 E-value=2.3e-06 Score=82.25 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=37.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHc------CCCEEEEecCCCccccccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKER------GVPSLIIEKESCLASLWKL 51 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~------g~~v~lie~~~~~~g~~~~ 51 (395)
|++|+|||||++|++||+.|.+. |.+|+|+|+.+.+||..+.
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 46899999999999999999986 3799999999999995544
No 310
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=2.2e-06 Score=79.70 Aligned_cols=37 Identities=35% Similarity=0.389 Sum_probs=35.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
.+|+|+|||.|||+||+.|+++|++|+|+|+++.+||
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 4799999999999999999999999999999999998
No 311
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.15 E-value=3.1e-06 Score=77.47 Aligned_cols=42 Identities=38% Similarity=0.479 Sum_probs=37.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCccccccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKL 51 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~-~v~lie~~~~~~g~~~~ 51 (395)
..+|||||||.||++||.+|.++|. +++|+|..+.+||-...
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 4689999999999999999998875 99999999999984443
No 312
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.13 E-value=3.4e-06 Score=82.02 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=34.5
Q ss_pred eEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc
Q 039923 13 PVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL 48 (395)
Q Consensus 13 vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~ 48 (395)
|||||||++||+||..|++.|++|+|+|++..+||.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~ 36 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGR 36 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCc
Confidence 699999999999999999999999999999999884
No 313
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.13 E-value=1.2e-05 Score=70.15 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCC
Q 039923 85 QFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGE 139 (395)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~ 139 (395)
.+.+.+.+..++.|.-..-+.+|...+...+ +.-+|.+.+ ..+++|..|+|+|.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~-~v~~i~trn~~diP~~a~~~VLAsGs 315 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGG-RVTEIYTRNHADIPLRADFYVLASGS 315 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCC-eEEEEEecccccCCCChhHeeeeccc
Confidence 4566677778888877777888999988763 222344554 68999999999994
No 314
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.10 E-value=1.1e-05 Score=70.73 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=34.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL 48 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~ 48 (395)
...+|+|||+|++|++||..|.++ ++|++||.+..+||.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 357899999999999999999764 699999999988873
No 315
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.10 E-value=4.7e-06 Score=80.72 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=36.0
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL 48 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~ 48 (395)
+||+|||||.+|+++|..|++.|++|+|+||...+||.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 38 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGS 38 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCc
Confidence 58999999999999999999999999999999988874
No 316
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.09 E-value=2.5e-05 Score=72.63 Aligned_cols=90 Identities=21% Similarity=0.224 Sum_probs=66.5
Q ss_pred CCCeEEECCChHHHHHHHHHHH----cC--CCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKE----RG--VPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSG 83 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~----~g--~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (395)
.++|+|||||++|+.+|..|.+ +| .+|+|+.. +.+. + ...
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~-~~~l-------------------------------~--~~~ 190 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG-ASLL-------------------------------P--GFP 190 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC-Cccc-------------------------------c--cCC
Confidence 3589999999999999999985 34 47988833 2110 0 011
Q ss_pred HHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCC
Q 039923 84 QQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGE 139 (395)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~ 139 (395)
..+.+.+.+.+++.+++++.+++|.+++.. .+.+.+ .++.+|.+|+|+|.
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~------~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGPDG------ALILADGRTLPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEcCC------eEEeCCCCEEecCEEEEccCC
Confidence 445667778888889999999999888532 255544 78999999999994
No 317
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.07 E-value=4.7e-05 Score=66.24 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=34.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
..|||||+|.||++++..|...|-.|+++|+...+||
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG 46 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG 46 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCC
Confidence 3699999999999999999999888999999988877
No 318
>PLN02568 polyamine oxidase
Probab=98.06 E-value=6.9e-06 Score=79.70 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=37.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC-----CCEEEEecCCCccccccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERG-----VPSLIIEKESCLASLWKL 51 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g-----~~v~lie~~~~~~g~~~~ 51 (395)
.+||+|||||++|+++|.+|++.| ++|+|+|+...+||.+..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 368999999999999999999887 899999999999996544
No 319
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.05 E-value=4.2e-05 Score=74.40 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=67.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||+.|+.+|..|++.+.+|+++++.+.+. . + ..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~-~---~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------A-D---KV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------h-h---HH
Confidence 3689999999999999999999999999999765211 0 1 12
Q ss_pred HHHHHHH-cCCccccCceEEEEEEcCCCCcEEEEEc----c--EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANH-FEIEPLLGQEVQWAKYDAAMGHWRVKTH----E--YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~V~~v~~~~~~~~~~v~~~----~--~~~~~d~lVlAtG~~~~~~~ 145 (395)
+...+++ .|++++.++.+++++..++ ....|++. + +++.+|.|++|+| ..|..
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~~-~v~~v~~~~~~~~~~~~i~~D~vi~a~G--~~Pn~ 452 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDGD-KVTGIRYQDRNSGEEKQLDLDGVFVQIG--LVPNT 452 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCCC-EEEEEEEEECCCCcEEEEEcCEEEEEeC--CcCCc
Confidence 3344444 5899999999999876531 22124332 1 5799999999999 45543
No 320
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=6e-06 Score=71.75 Aligned_cols=41 Identities=32% Similarity=0.312 Sum_probs=37.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWK 50 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~ 50 (395)
++|++|||+|.+|+.+|..|+++|.+|.|+||++++||-..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccc
Confidence 47999999999999999999999999999999999999443
No 321
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.04 E-value=4.2e-05 Score=69.02 Aligned_cols=89 Identities=18% Similarity=0.145 Sum_probs=65.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||+|+.|+.+|..|.+.+.+|+++++.+.+. . ...
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~----~~~ 181 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------A----EKI 181 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------c----CHH
Confidence 3689999999999999999999999999999865210 0 112
Q ss_pred HHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEc----c--EEEEeCEEEEeeCC
Q 039923 90 MEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTH----E--YEFMCRWLIVATGE 139 (395)
Q Consensus 90 ~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~----~--~~~~~d~lVlAtG~ 139 (395)
+.+.+.+. +++++.++++++++.++ +...++.. + .++.+|.+|+|+|.
T Consensus 182 ~~~~l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 182 LLDRLRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred HHHHHHhCCCeEEEeccEEEEEEccC--cEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 33344455 89999999999998654 32223321 2 68999999999994
No 322
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=98.03 E-value=8.1e-06 Score=73.65 Aligned_cols=98 Identities=26% Similarity=0.321 Sum_probs=74.9
Q ss_pred CCeEEECCChHHHHHHHHHHH--------------cCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKE--------------RGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPRE 76 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~--------------~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (395)
-.+|||||||.|+..|..|+. ...+|+++|..+++-.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~----------------------------- 269 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN----------------------------- 269 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-----------------------------
Confidence 358999999999999999975 1358999998764321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc---EEEEeCEEEEeeCCCCCCCC
Q 039923 77 YPAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE---YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~---~~~~~d~lVlAtG~~~~~~~ 145 (395)
.....+.+|.++...+.++.+..++.|..++... ..+...+ .++.|-.||-|||...+|..
T Consensus 270 ----mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~----I~~~~~~g~~~~iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 270 ----MFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT----IHAKTKDGEIEEIPYGLLVWATGNGPRPVI 333 (491)
T ss_pred ----HHHHHHHHHHHHHhhhccceeecccEEEeecCcE----EEEEcCCCceeeecceEEEecCCCCCchhh
Confidence 2246788999999999999999999998887543 2232222 78999999999996555543
No 323
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.02 E-value=2.9e-05 Score=73.89 Aligned_cols=62 Identities=10% Similarity=-0.059 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCC
Q 039923 80 YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEV 142 (395)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~ 142 (395)
..+-..+...+...|++.|..+..++.|+.+....+ +.+-|.+.-..+++.++|-|+|.|++
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-~~~gVeT~~G~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALVIENCPVTGLHVETD-KFGGVETPHGSIETECVVNAAGVWAR 244 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-CccceeccCcceecceEEechhHHHH
Confidence 344556777888889999999999999999987654 44557777789999999999998764
No 324
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.97 E-value=6.8e-05 Score=72.76 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=34.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLA 46 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~ 46 (395)
.++||||||||.||+.||..+++.|.+|+|+||....+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 45899999999999999999999999999999986444
No 325
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.97 E-value=6.9e-05 Score=71.56 Aligned_cols=92 Identities=16% Similarity=0.105 Sum_probs=64.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||..|+-+|..|.+.|.+|+++++.... ..+.....
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~---------------------------------~~~~~~~~--- 315 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE---------------------------------DMTARVEE--- 315 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc---------------------------------cCCCCHHH---
Confidence 478999999999999999999999999999987410 00001111
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcE-EEEEc-------------------c--EEEEeCEEEEeeCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHW-RVKTH-------------------E--YEFMCRWLIVATGE 139 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~-~v~~~-------------------~--~~~~~d~lVlAtG~ 139 (395)
.+.+.+.|+++++++.+.++..+++ +.+ .|++. + ..+.+|.||+|+|.
T Consensus 316 -~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 316 -IAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred -HHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 2335566999998888888865432 222 12221 1 47999999999994
No 326
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.96 E-value=1.1e-05 Score=75.36 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=72.5
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeecc-c--cCCChhH-----HHHHHHhh--CChhHHHHHHHHhhh
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKK-I--LGRSSFA-----ISVWLLKW--FPVDVVDRFLLFCSR 243 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~-~--~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~ 243 (395)
.|+|||+|++|+-+|..+++.|.+|.+++|++ .+..+- . .|+.... ...+...+ -+..+...+..+-..
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~-~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK-RVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS-SS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc-ccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 48999999999999999999999999999997 332210 0 0111100 00000000 112222223333333
Q ss_pred hhccchhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecC--ccEEe--cCe---EEEeCCcEecCcEEEE
Q 039923 244 LVLGDTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPG--IQKFT--AKG---AEFVNRTVKEFDSIIL 316 (395)
Q Consensus 244 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~~---v~~~~g~~i~~D~vi~ 316 (395)
.....+.+.|+...............+....-+.+.+.+++.+++++.+ |..+. +++ |.+.++.++.+|.||+
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEE
Confidence 3334446667652211111122122233444455667777778888866 76664 333 6666778999999999
Q ss_pred cCCCCCC
Q 039923 317 ATGYRSN 323 (395)
Q Consensus 317 atG~~~~ 323 (395)
|||-..-
T Consensus 161 AtGG~S~ 167 (409)
T PF03486_consen 161 ATGGKSY 167 (409)
T ss_dssp ----SSS
T ss_pred ecCCCCc
Confidence 9998764
No 327
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.96 E-value=9.7e-06 Score=77.78 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=35.1
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL 48 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~ 48 (395)
+|+|||||++|+++|+.|.+.|++|+|+|+.+.+||.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence 5899999999999999999999999999999988883
No 328
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.94 E-value=2.9e-05 Score=75.02 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=31.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
.++|+|||+|.+|+++|..|.++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999764
No 329
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.93 E-value=5.2e-05 Score=70.09 Aligned_cols=91 Identities=19% Similarity=0.107 Sum_probs=63.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVP-SLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~-v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
.++|+|||+|+.|+.+|..|.+.|.+ |+|+++..... . ... .
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~-------------------------------~--~~~----~ 214 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE-------------------------------A--PAG----K 214 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-------------------------------C--CCC----H
Confidence 36899999999999999999999997 99999764100 0 000 1
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE-------------------c-c-EEEEeCEEEEeeCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT-------------------H-E-YEFMCRWLIVATGE 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~-------------------~-~-~~~~~d~lVlAtG~ 139 (395)
.....+++.++++++++.+.+++..+ +.-.++. . + .++.+|.||+|+|.
T Consensus 215 ~~~~~l~~~gi~i~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 215 YEIERLIARGVEFLELVTPVRIIGEG--RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred HHHHHHHHcCCEEeeccCceeeecCC--cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 22334667799998888888876432 2111221 1 1 57999999999994
No 330
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=5.8e-05 Score=69.12 Aligned_cols=132 Identities=18% Similarity=0.165 Sum_probs=73.1
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC----------CcccccccCCcCcee-e-ecCCccccCCCC----
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES----------CLASLWKLKIYDHLQ-L-HLPKQFCQLPYV---- 71 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~----------~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~---- 71 (395)
...+||||||||.||+.+|...++.|.+.+++-.+- .+||.-.-+...... + -.-...|+.+..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~ 105 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKV 105 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHH
Confidence 456899999999999999999999999888887762 233321111110000 0 000111111111
Q ss_pred -CCCC-----CCCCCCCHHHHHHHHHHHHHHc-CCccccCceEEEEEEcCCCCcEE----E-EEccEEEEeCEEEEeeCC
Q 039923 72 -PFPR-----EYPAYPSGQQFITYMEAYANHF-EIEPLLGQEVQWAKYDAAMGHWR----V-KTHEYEFMCRWLIVATGE 139 (395)
Q Consensus 72 -~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~----v-~~~~~~~~~d~lVlAtG~ 139 (395)
+... +...-+++..+..+|+...... ++.++.+ .|..+-..+.+..-. | ..++..+.++.||+.||.
T Consensus 106 LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGT 184 (679)
T KOG2311|consen 106 LNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGT 184 (679)
T ss_pred hhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecCcEeccceEEEeecc
Confidence 1111 1123456677777777766654 4445433 455543332222111 2 233488999999999995
Q ss_pred C
Q 039923 140 N 140 (395)
Q Consensus 140 ~ 140 (395)
+
T Consensus 185 F 185 (679)
T KOG2311|consen 185 F 185 (679)
T ss_pred c
Confidence 3
No 331
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.92 E-value=3.6e-05 Score=70.32 Aligned_cols=128 Identities=18% Similarity=0.121 Sum_probs=66.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCC--CEEEEecCCCcccccccCCcCceeeecCC---ccccCCCCC-------CCCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGV--PSLIIEKESCLASLWKLKIYDHLQLHLPK---QFCQLPYVP-------FPRE 76 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~--~v~lie~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~~ 76 (395)
..++|+|||||.++..++..|.+++. +|+++-|...+-..-.... ...+..|. .++..+... ....
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f--~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ 266 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF--VNEIFSPEYVDYFYSLPDEERRELLREQRHT 266 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC--HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGG
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc--hhhhcCchhhhhhhcCCHHHHHHHHHHhHhh
Confidence 45789999999999999999999975 8999999763321000000 00011111 011110000 0000
Q ss_pred CCCCCCHHHHHHHH-----HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc------EEEEeCEEEEeeCC
Q 039923 77 YPAYPSGQQFITYM-----EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGE 139 (395)
Q Consensus 77 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~------~~~~~d~lVlAtG~ 139 (395)
...-++.+.+.+.. ++...+..+.++.+++|++++..++ +.|++++.+ .++.+|.||+|||.
T Consensus 267 ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 267 NYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp TSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 01122333332222 2233333566788999999999873 478888775 78999999999994
No 332
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.90 E-value=0.00011 Score=64.39 Aligned_cols=39 Identities=41% Similarity=0.592 Sum_probs=34.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC--Ccccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES--CLASL 48 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~--~~~g~ 48 (395)
..||+|||+|.+|+.+|..|+..|.+|+|+|++. .+||.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 5799999999999999999999999999999974 45553
No 333
>PRK12831 putative oxidoreductase; Provisional
Probab=97.84 E-value=0.00017 Score=69.12 Aligned_cols=92 Identities=20% Similarity=0.140 Sum_probs=63.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||..|+-+|..|.+.|.+|+++++.... ..+. ...++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~------------------------------~m~a--~~~e~--- 325 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEE------------------------------ELPA--RVEEV--- 325 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcc------------------------------cCCC--CHHHH---
Confidence 479999999999999999999999999999986410 0010 11121
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEE-EEE-------------------cc--EEEEeCEEEEeeCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWR-VKT-------------------HE--YEFMCRWLIVATGE 139 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~-v~~-------------------~~--~~~~~d~lVlAtG~ 139 (395)
..+.+.|+++++++.+.++...++ +.+. |.+ ++ ..+.+|.||+|+|.
T Consensus 326 --~~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~ 394 (464)
T PRK12831 326 --HHAKEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394 (464)
T ss_pred --HHHHHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCC
Confidence 224556999988888888765432 2211 111 12 47999999999994
No 334
>PLN02529 lysine-specific histone demethylase 1
Probab=97.84 E-value=2.4e-05 Score=77.92 Aligned_cols=41 Identities=32% Similarity=0.328 Sum_probs=37.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLW 49 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~ 49 (395)
..++|+|||||++|++||..|++.|++|+|+|+.+.+||..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCce
Confidence 35799999999999999999999999999999999888843
No 335
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.82 E-value=2.2e-05 Score=75.38 Aligned_cols=37 Identities=35% Similarity=0.404 Sum_probs=35.0
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL 48 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~ 48 (395)
+|+|||||++|+++|..|.+.|++|+|+|+.+.+||.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCce
Confidence 5899999999999999999999999999999999884
No 336
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.82 E-value=0.00016 Score=70.47 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=65.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||..|+.+|..|+..+.+|+++++.+.+. . ...
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~----~~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------A----DQV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------c----cHH
Confidence 3689999999999999999999999999999875221 0 012
Q ss_pred HHHHHHH-cCCccccCceEEEEEEcCCCCcEEEEEc----c--EEEEeCEEEEeeCC
Q 039923 90 MEAYANH-FEIEPLLGQEVQWAKYDAAMGHWRVKTH----E--YEFMCRWLIVATGE 139 (395)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~V~~v~~~~~~~~~~v~~~----~--~~~~~d~lVlAtG~ 139 (395)
+...+.+ .+++++.++.++++...++ ..-.+++. + .++.+|.+++|+|.
T Consensus 392 l~~~l~~~~gI~i~~~~~v~~i~~~~g-~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 392 LQDKLRSLPNVTIITNAQTTEVTGDGD-KVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred HHHHHhcCCCcEEEECcEEEEEEcCCC-cEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 3333333 5899999999999986531 22123332 2 57999999999994
No 337
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.80 E-value=0.0002 Score=68.66 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=65.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~-~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..+|+|||||..|+.+|..|.+.|. +|+++++..... ++....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~---------------------------------~~~~~~--- 316 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE---------------------------------MPASEE--- 316 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc---------------------------------CCCCHH---
Confidence 4789999999999999999999998 899999864110 000011
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCC-CcEEEEE----------------c-c-EEEEeCEEEEeeCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAM-GHWRVKT----------------H-E-YEFMCRWLIVATGE 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~-~~~~v~~----------------~-~-~~~~~d~lVlAtG~ 139 (395)
....+++.|+++++++.+..+..+++. ..+++.. + + .++.+|.||+|+|.
T Consensus 317 -~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 317 -EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred -HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 124456679999999999888765421 1122221 1 2 57999999999994
No 338
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.78 E-value=3.7e-05 Score=77.07 Aligned_cols=40 Identities=30% Similarity=0.359 Sum_probs=37.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL 48 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~ 48 (395)
..++|+|||||++|+++|+.|.+.|++|+|+|+...+||-
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 3578999999999999999999999999999999988874
No 339
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.77 E-value=0.00021 Score=62.63 Aligned_cols=36 Identities=31% Similarity=0.555 Sum_probs=32.6
Q ss_pred CCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 170 FRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 170 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
+..-.|+|||+|.+|+-.|..+++.|.+|.++++.+
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 345679999999999999999999999999999876
No 340
>PLN02487 zeta-carotene desaturase
Probab=97.75 E-value=3.4e-05 Score=75.07 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=36.4
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccc
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLW 49 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~ 49 (395)
++|+|||||++|+++|+.|.+.|++|+|+|+.+.+||.+
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence 599999999999999999999999999999999888743
No 341
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.74 E-value=3.6e-05 Score=74.79 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=34.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
.+||||||+| +|++||.++++.|.+|+||||....||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5899999999 999999999999999999999876554
No 342
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.73 E-value=4.2e-05 Score=75.00 Aligned_cols=39 Identities=36% Similarity=0.570 Sum_probs=35.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC--Cccc
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES--CLAS 47 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~--~~~g 47 (395)
..+||||||+|.+|++||..+++.|.+|+||||.+ .+||
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 35899999999999999999999999999999998 5665
No 343
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.73 E-value=3.7e-05 Score=72.59 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=39.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLK 52 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~ 52 (395)
.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.+...
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL 46 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence 4899999999999999999999999999999999999976653
No 344
>PLN02612 phytoene desaturase
Probab=97.71 E-value=6.2e-05 Score=73.91 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=37.3
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL 48 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~ 48 (395)
...++|+|||||++|+++|++|.+.|++|+++|+...+||.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 34579999999999999999999999999999999888873
No 345
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.68 E-value=9.9e-05 Score=76.27 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=33.7
Q ss_pred CCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 170 FRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 170 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..+++|+|||+|..|+..|..|++.|++||++++.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 358999999999999999999999999999999876
No 346
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=6.5e-05 Score=65.58 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=31.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESC 44 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~ 44 (395)
..|-|||||.+|..+|++|+++|++|.++|-++.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 4689999999999999999999999999998863
No 347
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.65 E-value=6e-05 Score=68.20 Aligned_cols=44 Identities=25% Similarity=0.248 Sum_probs=38.3
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCC--EEEEecCCCccccccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVP--SLIIEKESCLASLWKL 51 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~--v~lie~~~~~~g~~~~ 51 (395)
.+..+|+|+|||.+|+++|++|++++.+ ++|+|+.+.+||..+.
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 4457999999999999999999999764 6679999999997665
No 348
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.63 E-value=0.00047 Score=60.29 Aligned_cols=35 Identities=37% Similarity=0.652 Sum_probs=32.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 171 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..-.|+|||+|.+|+-.|..+++.|.+|.+++|++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 44569999999999999999999999999999987
No 349
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.62 E-value=6.9e-05 Score=72.25 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=36.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccc
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLW 49 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~ 49 (395)
+||+|||+||+|+.+|+.|++.|++|++||+....++.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 589999999999999999999999999999998777655
No 350
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.61 E-value=7.4e-05 Score=69.50 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=36.4
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASL 48 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~ 48 (395)
+..+||+|||||..|..+|.-.+-+|+++.++|+++.-.|+
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 34589999999999999999999999999999999765554
No 351
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.61 E-value=8.7e-05 Score=68.07 Aligned_cols=134 Identities=22% Similarity=0.267 Sum_probs=68.1
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeee----ccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccch
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILP----KKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDT 249 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (395)
.|+|||||..|+|.|..+++.|.+|.++..+...+.. ....+.....+... .+.+...+....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~E-idalgg~m~~~a------------ 67 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVRE-IDALGGLMGRAA------------ 67 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHH-HHHTT-SHHHHH------------
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHH-HhhhhhHHHHHH------------
Confidence 4899999999999999999999999999433212211 11111100011111 111221111111
Q ss_pred hhcCC----CCCCCCC-CcccCCCCCCcccChhhHhhhhc-CCeEEecC-ccEEec-----CeEEEeCCcEecCcEEEEc
Q 039923 250 KQIGI----QRPKMGP-LQWKNSVGKTPVLDDGAFAKIKS-GEIKVVPG-IQKFTA-----KGAEFVNRTVKEFDSIILA 317 (395)
Q Consensus 250 ~~~gi----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-v~~~~~-----~~v~~~~g~~i~~D~vi~a 317 (395)
...++ ...+-++ ...+.....+......+.+.+++ +++++... |..+.. .+|.+.+|+.+.+|.||+|
T Consensus 68 D~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVla 147 (392)
T PF01134_consen 68 DETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLA 147 (392)
T ss_dssp HHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-
T ss_pred hHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEe
Confidence 11111 1001111 11111111112333334555665 78998876 766643 2588999999999999999
Q ss_pred CCC
Q 039923 318 TGY 320 (395)
Q Consensus 318 tG~ 320 (395)
||.
T Consensus 148 TGt 150 (392)
T PF01134_consen 148 TGT 150 (392)
T ss_dssp TTT
T ss_pred ccc
Confidence 999
No 352
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.59 E-value=4.6e-05 Score=68.73 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=29.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERG-VPSLIIEKESC 44 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g-~~v~lie~~~~ 44 (395)
||+||||+|++|..+|.+|++.+ .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999864
No 353
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.59 E-value=0.0006 Score=64.20 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=33.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 171 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..++++|||+|.+|+-.|..|.+.|.++++++|.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 46889999999999999999999999999999997
No 354
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.59 E-value=0.00062 Score=69.51 Aligned_cols=93 Identities=22% Similarity=0.129 Sum_probs=62.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVP-SLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~-v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
.++|+|||||..|+-+|..+.+.|.+ |+++++.... .++. ...++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~------------------------------~~~~--~~~e~-- 615 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE------------------------------EMPA--RLEEV-- 615 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCCC--CHHHH--
Confidence 47899999999999999999999997 9999986410 0010 11111
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE-------------------cc--EEEEeCEEEEeeCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT-------------------HE--YEFMCRWLIVATGE 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~-------------------~~--~~~~~d~lVlAtG~ 139 (395)
..+.+.|+++++++.+.++..+++...-.+.+ .+ ..+.+|.||+|+|.
T Consensus 616 ---~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~ 684 (752)
T PRK12778 616 ---KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGV 684 (752)
T ss_pred ---HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCC
Confidence 23556699988888777776543211111111 11 46999999999994
No 355
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.58 E-value=0.00098 Score=60.32 Aligned_cols=35 Identities=37% Similarity=0.468 Sum_probs=30.9
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHc----CCCEEEEecC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKER----GVPSLIIEKE 42 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~----g~~v~lie~~ 42 (395)
+..+||+|+||||.|.++|..|..+ .+++.|+|..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 3468999999999999999999875 4699999998
No 356
>PLN02976 amine oxidase
Probab=97.58 E-value=9.7e-05 Score=77.20 Aligned_cols=44 Identities=30% Similarity=0.422 Sum_probs=39.9
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL 51 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~ 51 (395)
...++|+|||||++|+++|++|.+.|++|+|||+...+||.+..
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 34589999999999999999999999999999999999996654
No 357
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.57 E-value=0.0009 Score=58.98 Aligned_cols=35 Identities=37% Similarity=0.654 Sum_probs=31.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc----CCCEEEEecCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKER----GVPSLIIEKES 43 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~----g~~v~lie~~~ 43 (395)
...||+|||||-.|.+.|+-|.++ |++|+++|++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 457999999999999999999875 68999999985
No 358
>PRK06834 hypothetical protein; Provisional
Probab=97.57 E-value=0.00051 Score=66.34 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=31.4
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 569999999999999999999999999999987
No 359
>PLN03000 amine oxidase
Probab=97.54 E-value=0.00013 Score=73.41 Aligned_cols=42 Identities=36% Similarity=0.326 Sum_probs=38.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccccccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKL 51 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~ 51 (395)
.++|+|||||++|+.+|..|.+.|++|+|+|+...+||.+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 589999999999999999999999999999999999985443
No 360
>PLN02463 lycopene beta cyclase
Probab=97.53 E-value=0.00053 Score=65.09 Aligned_cols=136 Identities=12% Similarity=0.115 Sum_probs=71.4
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccchhh
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQ 251 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (395)
.-.|+|||+|.+|.-+|..|++.|.+|.++++++....|+... .+...+.. +. +.+.....+..... ...
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g-----~w~~~l~~-lg--l~~~l~~~w~~~~v-~~~- 97 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYG-----VWVDEFEA-LG--LLDCLDTTWPGAVV-YID- 97 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccc-----hHHHHHHH-CC--cHHHHHhhCCCcEE-EEe-
Confidence 3479999999999999999999999999999876322232111 11111111 10 00111000000000 000
Q ss_pred cCCCCCCCCCCcccCC-C-CCCcccChhhHhhhhcCCeEEecC-ccEEecC----eEEEeCCcEecCcEEEEcCCCCCC
Q 039923 252 IGIQRPKMGPLQWKNS-V-GKTPVLDDGAFAKIKSGEIKVVPG-IQKFTAK----GAEFVNRTVKEFDSIILATGYRSN 323 (395)
Q Consensus 252 ~gi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~----~v~~~~g~~i~~D~vi~atG~~~~ 323 (395)
.......... . -.+..+...+.+.+.+.++++... |.+++.. .+.+++|.++++|.||.|+|....
T Consensus 98 ------~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 98 ------DGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ------CCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0000000000 0 011223344455555556777644 5555432 377788889999999999998764
No 361
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.53 E-value=0.00077 Score=64.93 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=63.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~-~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
.++|+|||||..|+-+|..+.+.|. +|++++.....+... +.. ..++.++. .
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------------------~~~----~~~~~~~~-----~ 333 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------------------NKN----NPWPYWPM-----K 333 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------------------ccc----cCCcccch-----H
Confidence 4789999999999999999999986 788776554211000 000 00011111 0
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEE-EEE-------------cc--EEEEeCEEEEeeCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWR-VKT-------------HE--YEFMCRWLIVATGE 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~-v~~-------------~~--~~~~~d~lVlAtG~ 139 (395)
.....+.+.|+++++++.++++...+ +.++ |+. .+ .++.+|.||+|+|.
T Consensus 334 ~~~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 334 LEVSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HHHHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 11334556699999998888886432 3221 221 12 68999999999994
No 362
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.52 E-value=0.00028 Score=72.35 Aligned_cols=36 Identities=28% Similarity=0.521 Sum_probs=33.5
Q ss_pred CCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 170 FRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 170 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..+++|+|||+|.+|+..|..|++.|.+|+++.+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 467899999999999999999999999999999876
No 363
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.51 E-value=0.0014 Score=65.72 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=61.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~-~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
.++|+|||||..|+.+|..+.+.|. +|+|+.+.... ..+. ...++.+
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~------------------------------~mpa--~~~ei~~ 370 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTRE------------------------------EMPA--NRAEIEE 370 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCCC--CHHHHHH
Confidence 4789999999999999999999997 69999876410 0010 1122222
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE-------------------cc--EEEEeCEEEEeeCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT-------------------HE--YEFMCRWLIVATGE 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~-------------------~~--~~~~~d~lVlAtG~ 139 (395)
+.+.|+++++++.+.++...+ +...++. ++ ..+.+|.||+|+|.
T Consensus 371 -----a~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~ 435 (652)
T PRK12814 371 -----ALAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQ 435 (652)
T ss_pred -----HHHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCC
Confidence 224589998888887776544 2211210 12 46999999999994
No 364
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.51 E-value=0.00015 Score=67.31 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=29.3
Q ss_pred eEEEECCCcCHHHHHHHHhhC--CCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKN--GAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~--g~~V~~~~r~~ 205 (395)
.|+|||+|..|..+|..|.+. |.+|.++++.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 379999999999999999986 99999999976
No 365
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.49 E-value=0.00065 Score=66.74 Aligned_cols=94 Identities=21% Similarity=0.190 Sum_probs=62.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. .. ..+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~----------------------------------~~-~~~--- 184 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT----------------------------------CA-KLI--- 184 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc----------------------------------cC-HHH---
Confidence 4689999999999999999999999999999875210 00 111
Q ss_pred HHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE----ccE--EE--EeCE----EEEeeCCCCCCCC
Q 039923 90 MEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT----HEY--EF--MCRW----LIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~----~~~--~~--~~d~----lVlAtG~~~~~~~ 145 (395)
..+...+.+++++++++|+++..++ ....+.. +++ ++ .+|. |++|+|. .|..
T Consensus 185 ~~~~~~~~gV~i~~~~~V~~i~~~~--~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~--~Pn~ 248 (555)
T TIGR03143 185 AEKVKNHPKIEVKFNTELKEATGDD--GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY--APSS 248 (555)
T ss_pred HHHHHhCCCcEEEeCCEEEEEEcCC--cEEEEEEEECCCCCEEEEeccccccceEEEEEeCC--CCCh
Confidence 2233334589999999999987433 2211211 122 22 3566 9999994 4543
No 366
>PRK06847 hypothetical protein; Provisional
Probab=97.49 E-value=0.00058 Score=63.82 Aligned_cols=34 Identities=38% Similarity=0.565 Sum_probs=32.1
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 5689999999999999999999999999999987
No 367
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.48 E-value=0.0015 Score=62.81 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=63.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~-~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
.++++|||+|..|+.+|..+.+.|. +|+++++.+... . + ....++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~---------------------~---------~--~~~~e~-- 327 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN---------------------M---------P--GSRREV-- 327 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc---------------------C---------C--CCHHHH--
Confidence 4789999999999999999999996 799999865210 0 0 011121
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcE-EEEE-------------------cc--EEEEeCEEEEeeCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHW-RVKT-------------------HE--YEFMCRWLIVATGE 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~-~v~~-------------------~~--~~~~~d~lVlAtG~ 139 (395)
..+.+.|+++++++.+.++..+++ +.+ .|++ .+ ..+.+|.||+|+|.
T Consensus 328 ---~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~ 396 (467)
T TIGR01318 328 ---ANAREEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF 396 (467)
T ss_pred ---HHHHhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC
Confidence 234566999999988888865432 221 1111 11 47999999999994
No 368
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.47 E-value=0.0013 Score=52.95 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=25.4
Q ss_pred EEECCCcCHHHHHHHHhhC-----CCeEEEEEecC
Q 039923 176 LVVGCGNSGMEISFDLCKN-----GAQVSLVVRDK 205 (395)
Q Consensus 176 ~VvG~G~~a~e~a~~l~~~-----g~~V~~~~r~~ 205 (395)
+|||+|.+|+-++..|.+. ..+|+++.+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 5999999999999999877 34689998865
No 369
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.45 E-value=0.0012 Score=57.66 Aligned_cols=39 Identities=38% Similarity=0.412 Sum_probs=34.3
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCcc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKER--GVPSLIIEKESCLA 46 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~--g~~v~lie~~~~~~ 46 (395)
...+|+||||||+.|++.|++|.-+ +.+|.++|++..++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 4569999999999999999999887 78999999996543
No 370
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.44 E-value=0.00077 Score=64.39 Aligned_cols=35 Identities=29% Similarity=0.543 Sum_probs=32.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 171 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..++|+|||+|.+|+-.|..|.+.|.+|+++++++
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 46889999999999999999999999999999986
No 371
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.43 E-value=0.00036 Score=70.85 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 169 EFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 169 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
...+++|+|||+|..|+.+|..|+..|++|+++++.+
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 3478999999999999999999999999999999864
No 372
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.41 E-value=0.001 Score=69.73 Aligned_cols=93 Identities=24% Similarity=0.177 Sum_probs=67.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~-~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.+ ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence 4689999999999999999999996 58899876421 11
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE---ccEEEEeCEEEEeeCCCCCCCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT---HEYEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~---~~~~~~~d~lVlAtG~~~~~~~ 145 (395)
.+...+++.+++++.++.|..++.++....+++.. +.+++.+|.|+++.| ..|..
T Consensus 356 ~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G--~~Pnt 413 (985)
T TIGR01372 356 EARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGG--WTPVV 413 (985)
T ss_pred HHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCC--cCchh
Confidence 23345667799999999999887543212233332 127899999999999 45543
No 373
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.40 E-value=0.00041 Score=66.31 Aligned_cols=35 Identities=34% Similarity=0.475 Sum_probs=32.4
Q ss_pred CCCeEEEECCCcCHHHHHHHHhh--CCCeEEEEEecC
Q 039923 171 RASKVLVVGCGNSGMEISFDLCK--NGAQVSLVVRDK 205 (395)
Q Consensus 171 ~~~~v~VvG~G~~a~e~a~~l~~--~g~~V~~~~r~~ 205 (395)
.+++|+|||+|..|+..|..|++ .|++|+++++.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 57899999999999999999986 699999999987
No 374
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.40 E-value=9.5e-05 Score=62.41 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=45.5
Q ss_pred CCcEecCcEEEEcCCCCCCCCccc------------------------------------cccccccccCCCCCCCCCCC
Q 039923 305 NRTVKEFDSIILATGYRSNVSSWL------------------------------------KEASLFNQKNNNNPQDSYPK 348 (395)
Q Consensus 305 ~g~~i~~D~vi~atG~~~~~~~~~------------------------------------~~~~l~~~~~~g~~~~~~~~ 348 (395)
++.++.+|.+|+|||..|..+.+. +..+++ ++++|++.+| ++
T Consensus 105 ~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~-~~~~g~i~vd-~~ 182 (201)
T PF07992_consen 105 DGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVE-LDENGFIKVD-EN 182 (201)
T ss_dssp TEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTST-BTTTSSBEEB-TT
T ss_pred CceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccccccccccccc-cccccccccc-cc
Confidence 456899999999999886532110 233566 6789999999 68
Q ss_pred CCCCCCCeEEEEeccccc
Q 039923 349 NWKGKNGVYSVGFARQGL 366 (395)
Q Consensus 349 ~~~~~~~iya~Gd~~~~~ 366 (395)
++++.||||++|||+..+
T Consensus 183 ~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 183 LQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp SBBSSTTEEE-GGGBEES
T ss_pred cccccccccccccccccC
Confidence 899999999999998754
No 375
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.39 E-value=0.0017 Score=65.20 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=62.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~-~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
.++|+|||||..|+-+|..+.++|. +|+++.+..... ++.....
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~---------------------------------~~~~~~e-- 512 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN---------------------------------MPGSKKE-- 512 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC---------------------------------CCCCHHH--
Confidence 3689999999999999999999997 699988764210 0001111
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE-------------------cc--EEEEeCEEEEeeCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT-------------------HE--YEFMCRWLIVATGE 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~-------------------~~--~~~~~d~lVlAtG~ 139 (395)
.+.+.+.|+++++++.+.++..++++..-.|++ .+ ..+.+|.||+|+|.
T Consensus 513 --~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~ 582 (654)
T PRK12769 513 --VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGF 582 (654)
T ss_pred --HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccC
Confidence 234566799998888888776543212111111 11 47999999999994
No 376
>PRK07236 hypothetical protein; Provisional
Probab=97.37 E-value=0.0011 Score=62.32 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=32.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 171 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
...+|+|||+|.+|+.+|..|++.|.+|++++|.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45789999999999999999999999999999987
No 377
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.36 E-value=0.00051 Score=64.41 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=75.1
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccchhh
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQ 251 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (395)
...|+|||+|.+|+-+|..|++.|.+|+++++.+..+.+.. .+......+..++..+... +.+...-. .....
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~-r~~~l~~~~~~~L~~lG~~--~~i~~~~~----~~~~~ 74 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG-RGIALSPNALRALERLGLW--DRLEALGV----PPLHV 74 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc-eeeeecHhHHHHHHHcCCh--hhhhhccC----Cceee
Confidence 35799999999999999999999999999999832333322 2222222222222222110 11100000 00000
Q ss_pred cCCCCCCCCCC--cccCCC-C------CCcccChhhHhhhhc-CCeEEecC--ccEEecCe----EEEe-CCcEecCcEE
Q 039923 252 IGIQRPKMGPL--QWKNSV-G------KTPVLDDGAFAKIKS-GEIKVVPG--IQKFTAKG----AEFV-NRTVKEFDSI 314 (395)
Q Consensus 252 ~gi~~~~~~~~--~~~~~~-~------~~~~~~~~~~~~~~~-~~v~~~~~--v~~~~~~~----v~~~-~g~~i~~D~v 314 (395)
..+........ ...... . ....+...+.+++.+ +++++..+ |+.++... +.+. +|+++.+|++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~ll 154 (387)
T COG0654 75 MVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLL 154 (387)
T ss_pred EEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEE
Confidence 00000000000 000000 0 011333444555543 55888876 66665443 7777 9999999999
Q ss_pred EEcCCCCC
Q 039923 315 ILATGYRS 322 (395)
Q Consensus 315 i~atG~~~ 322 (395)
|-|-|...
T Consensus 155 VgADG~~S 162 (387)
T COG0654 155 VGADGANS 162 (387)
T ss_pred EECCCCch
Confidence 99999654
No 378
>PLN02661 Putative thiazole synthesis
Probab=97.35 E-value=0.0038 Score=56.57 Aligned_cols=38 Identities=24% Similarity=0.666 Sum_probs=32.7
Q ss_pred cCCCCCeEEEECCCcCHHHHHHHHhhC-CCeEEEEEecC
Q 039923 168 VEFRASKVLVVGCGNSGMEISFDLCKN-GAQVSLVVRDK 205 (395)
Q Consensus 168 ~~~~~~~v~VvG~G~~a~e~a~~l~~~-g~~V~~~~r~~ 205 (395)
.++..-.|+|||+|.+|+-.|..|++. |.+|+++++..
T Consensus 88 ~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 88 ITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 344566899999999999999999875 88999999876
No 379
>PRK02106 choline dehydrogenase; Validated
Probab=97.31 E-value=0.0003 Score=69.36 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=32.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHH-cCCCEEEEecCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKE-RGVPSLIIEKES 43 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~-~g~~v~lie~~~ 43 (395)
..+|+||||||.+|+.+|.+|++ .|.+|+|+|+..
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 34899999999999999999999 699999999985
No 380
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.30 E-value=0.0011 Score=58.64 Aligned_cols=97 Identities=13% Similarity=0.017 Sum_probs=74.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
..++++|+|||+.++..|--++..|.++.++=|...+-- ...+.+.+
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR---------------------------------~FD~~i~~ 234 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLR---------------------------------GFDEMISD 234 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhc---------------------------------chhHHHHH
Confidence 358999999999999999999999999999888763310 11255666
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATG 138 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG 138 (395)
.+.+..+..|++++-++.++++....+.....+++.+..-..|.|+.|+|
T Consensus 235 ~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiG 284 (478)
T KOG0405|consen 235 LVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIG 284 (478)
T ss_pred HHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEec
Confidence 66777777799999999999998876533333444445556999999999
No 381
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.22 E-value=0.00053 Score=57.93 Aligned_cols=30 Identities=23% Similarity=0.577 Sum_probs=24.5
Q ss_pred EEECCCcCHHHHHHHHhhCCCe-EEEEEecC
Q 039923 176 LVVGCGNSGMEISFDLCKNGAQ-VSLVVRDK 205 (395)
Q Consensus 176 ~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~ 205 (395)
+|||+|.+|+-+|..|.+.|.+ +++++|++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999999 99999985
No 382
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.17 E-value=0.00095 Score=68.88 Aligned_cols=35 Identities=29% Similarity=0.566 Sum_probs=32.7
Q ss_pred CCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 171 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.+++|+|||||..|+..|..|++.|.+|+++++++
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 46799999999999999999999999999999876
No 383
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.16 E-value=0.00056 Score=66.34 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=28.2
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.|+|+|||+|.+|+-.+..|.+.|.+++++++++
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 4799999999999999999999999999999997
No 384
>PRK06753 hypothetical protein; Provisional
Probab=97.15 E-value=0.0022 Score=59.84 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=30.9
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
+|+|||||.+|+-+|..|++.|.+|++++|++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999998
No 385
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.15 E-value=0.0075 Score=56.60 Aligned_cols=40 Identities=28% Similarity=0.253 Sum_probs=34.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcC----CCEEEEecCCCcccccc
Q 039923 11 PGPVIVGAGPSGLAAAACLKERG----VPSLIIEKESCLASLWK 50 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g----~~v~lie~~~~~~g~~~ 50 (395)
++.=|||+|.|+|++|.+|.+.+ -+|+|+|+....||...
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 56789999999999999999984 49999999987777543
No 386
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.10 E-value=0.0016 Score=61.25 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.6
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
...|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 4469999999999999999999999999999986
No 387
>PRK09897 hypothetical protein; Provisional
Probab=97.09 E-value=0.0046 Score=59.96 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=28.8
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCC--eEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGA--QVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~--~V~~~~r~~ 205 (395)
++|+|||+|.+|+-++..|.+.+. +|+++++++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 579999999999999999987644 799999865
No 388
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.08 E-value=0.0021 Score=58.21 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=71.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHc----CCCEE-EEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKER----GVPSL-IIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQ 84 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~----g~~v~-lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (395)
...|.|||+|+-|..+|+.|.+. |.+|. +|+-... ..-+.-+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n---------------------------------m~kiLPe 393 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN---------------------------------MEKILPE 393 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC---------------------------------hhhhhHH
Confidence 36799999999999999999875 34433 3332211 1112224
Q ss_pred HHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 85 QFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
.+.++-.+..++-|+.++-+..|+++.... ..+.+.+.+ .++..|.||+|+| ..|+.
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~lkL~dG~~l~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLVLKLSDGSELRTDLVVVAVG--EEPNS 451 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhhhhhhhc--cceEEEecCCCeeeeeeEEEEec--CCCch
Confidence 455555666777799999999999998877 666788877 8999999999999 45554
No 389
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0012 Score=57.03 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=29.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcC-------CCEEEEecCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERG-------VPSLIIEKES 43 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g-------~~v~lie~~~ 43 (395)
++.+|+|||+|..|+++|..|++.. .+|+++..+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 3578999999999999999998853 4899988763
No 390
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.06 E-value=0.0016 Score=61.27 Aligned_cols=34 Identities=29% Similarity=0.574 Sum_probs=32.3
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 5689999999999999999999999999999987
No 391
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.05 E-value=0.003 Score=61.56 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=30.5
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||||..|++.|..+++.|.+|.+++++.
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 359999999999999999999999999999874
No 392
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.04 E-value=0.0024 Score=60.08 Aligned_cols=30 Identities=23% Similarity=0.573 Sum_probs=28.5
Q ss_pred EEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 176 LVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 176 ~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
+|||+|.+|+-.|..+++.|.+|+++++++
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 589999999999999999999999999987
No 393
>PRK05868 hypothetical protein; Validated
Probab=97.04 E-value=0.0036 Score=58.37 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=31.4
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
++|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 479999999999999999999999999999987
No 394
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.99 E-value=0.0094 Score=59.73 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=62.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGV-PSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~-~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
.++|+|||+|..|+-+|..+.+.|. +|+++.++.... ++ ....++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~------------------------------~~--~~~~e~~- 497 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS------------------------------MP--GSRKEVV- 497 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc------------------------------CC--CCHHHHH-
Confidence 4789999999999999999999996 799998864211 00 0112222
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEE-EE---E----------------cc--EEEEeCEEEEeeCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWR-VK---T----------------HE--YEFMCRWLIVATGE 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~-v~---~----------------~~--~~~~~d~lVlAtG~ 139 (395)
.+.+.|+++++++.++++..+++ +.+. +. . .+ ..+.+|.||+|+|.
T Consensus 498 ----~a~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~ 565 (639)
T PRK12809 498 ----NAREEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGF 565 (639)
T ss_pred ----HHHHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCC
Confidence 24566999988888888765432 2211 11 1 11 57999999999994
No 395
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.98 E-value=0.004 Score=58.82 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=30.5
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.|+|||+|.+|+-+|..|.+.|.+|+++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 69999999999999999999999999999876
No 396
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.97 E-value=0.00086 Score=65.44 Aligned_cols=36 Identities=33% Similarity=0.453 Sum_probs=33.2
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
...+|+||||+|.+|..+|.+|...|.+|+|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 346999999999999999999998899999999984
No 397
>PLN02785 Protein HOTHEAD
Probab=96.94 E-value=0.0012 Score=65.03 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=32.1
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
+..+|+||||||.+|+.+|.+|.+ +.+|+|+|+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 446999999999999999999999 68999999986
No 398
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.92 E-value=0.0016 Score=60.79 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=70.3
Q ss_pred EEEECCCcCHHHHHHHH--hhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccchhhc
Q 039923 175 VLVVGCGNSGMEISFDL--CKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQI 252 (395)
Q Consensus 175 v~VvG~G~~a~e~a~~l--~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (395)
|+|||+|++|.-+|..| ...|.+|.++++.+....|... .+..+....-+ .+..... .-...
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~------tW~~~~~~~~~---~~~~v~~-------~w~~~ 65 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR------TWCFWEKDLGP---LDSLVSH-------RWSGW 65 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc------ccccccccccc---hHHHHhe-------ecCce
Confidence 79999999999999999 7779999999987722112111 11111111100 0111000 00011
Q ss_pred CCCCCCCCCCccc-CC-CCCCcccChhhHhhhhcCCeEEecC-ccEEecCe----EEEeCCcEecCcEEEEcCCCCCC
Q 039923 253 GIQRPKMGPLQWK-NS-VGKTPVLDDGAFAKIKSGEIKVVPG-IQKFTAKG----AEFVNRTVKEFDSIILATGYRSN 323 (395)
Q Consensus 253 gi~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~~----v~~~~g~~i~~D~vi~atG~~~~ 323 (395)
.+..+........ .. .-.+..+...+.+.+..+++..... |..+...+ +.+.+|.++.++.||-|.|..+.
T Consensus 66 ~v~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 66 RVYFPDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEeCCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 1110111000000 00 0112334444455555455555444 77776554 58889999999999999997654
No 399
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.91 E-value=0.003 Score=61.07 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 171 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.+++++|+|+|.+|+++|..|++.|.+|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999999999999999999999999998765
No 400
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.91 E-value=0.00023 Score=58.21 Aligned_cols=41 Identities=34% Similarity=0.527 Sum_probs=34.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCccc-ccc
Q 039923 10 TPGPVIVGAGPSGLAAAACLKER--GVPSLIIEKESCLAS-LWK 50 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~--g~~v~lie~~~~~~g-~~~ 50 (395)
..||+|+|+|.+|+++|+.+.++ +.+|.|||..-..|| .|.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 46999999999999999999976 579999999876654 554
No 401
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.89 E-value=0.0089 Score=62.73 Aligned_cols=93 Identities=22% Similarity=0.214 Sum_probs=60.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVP-SLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~-v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
.++|+|||||..|+-+|..+.+.|.+ |+++.+.... ..+. ...++
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~------------------------------em~a--~~~e~-- 616 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEA------------------------------EAPA--RIEEI-- 616 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcc------------------------------cCCC--CHHHH--
Confidence 47899999999999999999999984 7787765310 0000 01111
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEE------------------cc--EEEEeCEEEEeeCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKT------------------HE--YEFMCRWLIVATGE 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~------------------~~--~~~~~d~lVlAtG~ 139 (395)
+.+.+.|+++++++.+.++..++++..-.|++ .+ .++.+|.||+|+|.
T Consensus 617 ---~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~ 684 (1006)
T PRK12775 617 ---RHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGT 684 (1006)
T ss_pred ---HHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCc
Confidence 23556699988888777775433211111111 11 47999999999994
No 402
>PRK09126 hypothetical protein; Provisional
Probab=96.89 E-value=0.0055 Score=57.62 Aligned_cols=33 Identities=33% Similarity=0.643 Sum_probs=31.1
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 359999999999999999999999999999987
No 403
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.87 E-value=0.0011 Score=60.58 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=36.5
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCccc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLAS 47 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g 47 (395)
...+|++|||+|..|+.+|..|++.|.+|.++|+....||
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 4469999999999999999999999999999999966666
No 404
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.86 E-value=0.01 Score=56.21 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=32.0
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
...|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 4569999999999999999999999999999987
No 405
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.85 E-value=0.0038 Score=58.65 Aligned_cols=32 Identities=28% Similarity=0.616 Sum_probs=29.9
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.|+|||+|.+|.-+|..|++.|.+|+++++.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 38999999999999999999999999999886
No 406
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.85 E-value=0.0017 Score=61.40 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=31.5
Q ss_pred CCCeEEEECCCcCHHHHHHHHh-hCCCeEEEEEecC
Q 039923 171 RASKVLVVGCGNSGMEISFDLC-KNGAQVSLVVRDK 205 (395)
Q Consensus 171 ~~~~v~VvG~G~~a~e~a~~l~-~~g~~V~~~~r~~ 205 (395)
.+++|+|||+|.+|+.+|..|+ ..|++|+++++.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5789999999999999999765 5699999999988
No 407
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.84 E-value=0.014 Score=56.42 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=30.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGV-PSLIIEKES 43 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~-~v~lie~~~ 43 (395)
.++|+|||||..|+-+|..+.+.|. .|+++|..+
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 4789999999999999999999885 799998765
No 408
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.84 E-value=0.001 Score=65.21 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=30.4
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCC
Q 039923 12 GPVIVGAGPSGLAAAACLKERG-VPSLIIEKES 43 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g-~~v~lie~~~ 43 (395)
|+||||||.+|+.+|.+|++.+ .+|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999985
No 409
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.84 E-value=0.0041 Score=58.75 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=29.8
Q ss_pred eEEEECCCcCHHHHHHHHhhCC--CeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNG--AQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g--~~V~~~~r~~ 205 (395)
.|+|||+|.+|+-+|..|++.| .+|+++++.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 4899999999999999999985 8999999987
No 410
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.015 Score=52.23 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=69.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITY 89 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (395)
.++|+|||||-+++..|..|.+-+.+|+++=|.+.+- . .+.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a----~~~ 183 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------A----EEI 183 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------c----CHH
Confidence 4699999999999999999999999999999886321 0 223
Q ss_pred HHHHHHHc-CCccccCceEEEEEEcCCCCcEEEEEc-c--EEEEeCEEEEeeCCCCCCCC
Q 039923 90 MEAYANHF-EIEPLLGQEVQWAKYDAAMGHWRVKTH-E--YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 90 ~~~~~~~~-~~~~~~~~~V~~v~~~~~~~~~~v~~~-~--~~~~~d~lVlAtG~~~~~~~ 145 (395)
+.+.+.+. ++.+++++++.++.-++ -..+.+... + ..+.+|.++++.| ..|.+
T Consensus 184 ~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~gvf~~iG--~~p~~ 240 (305)
T COG0492 184 LVERLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVDGVFIAIG--HLPNT 240 (305)
T ss_pred HHHHHHhcCCeEEEeCCceeEEecCc-cceEEEEecCCceEEEEeceEEEecC--CCCch
Confidence 33444444 78889999999988764 233333322 2 6899999999999 45553
No 411
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.80 E-value=0.0011 Score=63.69 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=30.2
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
+|+|||.|++|+++|+.|.++|++|+++|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999875
No 412
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.79 E-value=0.013 Score=53.39 Aligned_cols=128 Identities=19% Similarity=0.139 Sum_probs=70.8
Q ss_pred CeEEECCChHHHHHHHHHHHcC----CCEEEEecCCCcccccccCCcCcee--eecCC---ccccCCCCC------CCCC
Q 039923 12 GPVIVGAGPSGLAAAACLKERG----VPSLIIEKESCLASLWKLKIYDHLQ--LHLPK---QFCQLPYVP------FPRE 76 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g----~~v~lie~~~~~~g~~~~~~~~~~~--~~~~~---~~~~~~~~~------~~~~ 76 (395)
.|+|||+|.++..+-+.|...- .++..+-|....- ...|..+. ...|. .++..+... ....
T Consensus 189 ~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~----p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~ 264 (436)
T COG3486 189 SVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFL----PMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRL 264 (436)
T ss_pred eEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCC----ccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCc
Confidence 4999999999999999998752 3355566654210 00111111 11111 111111100 0000
Q ss_pred CCCCCCHHHHHHHHHHHHHH------cCCccccCceEEEEEEcCCCCcEEEEEcc------EEEEeCEEEEeeCCCCCCC
Q 039923 77 YPAYPSGQQFITYMEAYANH------FEIEPLLGQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~V~~v~~~~~~~~~~v~~~~------~~~~~d~lVlAtG~~~~~~ 144 (395)
.-.-++.+.+.+......++ ..+.+..+++|.+++...+ +.+++++.. .++.+|.||+|||. +..
T Consensus 265 ~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATGY--~~~ 341 (436)
T COG3486 265 LYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-GRYRLTLRHHETGELETVETDAVILATGY--RRA 341 (436)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-ceEEEEEeeccCCCceEEEeeEEEEeccc--ccC
Confidence 01223444444444433332 2355677899999998875 447777653 78999999999995 444
Q ss_pred CC
Q 039923 145 LP 146 (395)
Q Consensus 145 ~p 146 (395)
+|
T Consensus 342 ~P 343 (436)
T COG3486 342 VP 343 (436)
T ss_pred Cc
Confidence 55
No 413
>PRK08244 hypothetical protein; Provisional
Probab=96.77 E-value=0.0079 Score=58.44 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=31.2
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 359999999999999999999999999999987
No 414
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.77 E-value=0.0034 Score=58.85 Aligned_cols=32 Identities=22% Similarity=0.606 Sum_probs=30.5
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.|+|||+|.+|.-+|..|++.|.+|++++|++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 38999999999999999999999999999997
No 415
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.75 E-value=0.0035 Score=58.69 Aligned_cols=32 Identities=25% Similarity=0.603 Sum_probs=30.4
Q ss_pred eEEEECCCcCHHHHHHHHhhCC-CeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNG-AQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g-~~V~~~~r~~ 205 (395)
.|+|||+|.+|.-+|..|++.| .+|++++|.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 3899999999999999999999 9999999987
No 416
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0054 Score=58.41 Aligned_cols=35 Identities=20% Similarity=0.500 Sum_probs=32.1
Q ss_pred CCCeEEEECCCcCHHHHHHHHhhCCCe-EEEEEecC
Q 039923 171 RASKVLVVGCGNSGMEISFDLCKNGAQ-VSLVVRDK 205 (395)
Q Consensus 171 ~~~~v~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~ 205 (395)
....|+|||+|.+|+-.|..|.+.|.. +.+++++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 456799999999999999999999988 99999986
No 417
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.74 E-value=0.0029 Score=61.62 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=69.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITYM 90 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (395)
..-+|||||.=|+.+|..|...|.+++++.-.+.+- ..-....--..+
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM--------------------------------erQLD~~ag~lL 193 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM--------------------------------ERQLDRTAGRLL 193 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH--------------------------------HHhhhhHHHHHH
Confidence 346999999999999999999999999988654210 000012223455
Q ss_pred HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCCC
Q 039923 91 EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPVL 145 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~~ 145 (395)
++..++.|++++++..++.+-..+ ..-.+.+++ +.+.+|.+|.|+| -+|+.
T Consensus 194 ~~~le~~Gi~~~l~~~t~ei~g~~--~~~~vr~~DG~~i~ad~VV~a~G--IrPn~ 245 (793)
T COG1251 194 RRKLEDLGIKVLLEKNTEEIVGED--KVEGVRFADGTEIPADLVVMAVG--IRPND 245 (793)
T ss_pred HHHHHhhcceeecccchhhhhcCc--ceeeEeecCCCcccceeEEEecc--ccccc
Confidence 677777799988876666655433 333466666 7899999999999 56654
No 418
>PRK06184 hypothetical protein; Provisional
Probab=96.71 E-value=0.0085 Score=58.35 Aligned_cols=34 Identities=26% Similarity=0.677 Sum_probs=31.8
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.-.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3469999999999999999999999999999987
No 419
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.69 E-value=0.013 Score=55.05 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=31.2
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 369999999999999999999999999999987
No 420
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.69 E-value=0.0074 Score=57.04 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=30.2
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEec
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRD 204 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~ 204 (395)
..|+|||+|.+|+-+|..|.+.|.+|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999986
No 421
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.68 E-value=0.013 Score=55.24 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=66.0
Q ss_pred EEECCChHHHHHH-HHHH----HcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 14 VIVGAGPSGLAAA-ACLK----ERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 14 vIIG~G~aG~~~A-~~l~----~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
+|++.|.-|+..+ ..+. +.|.+|++++..+. ..+..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp-----------------------------------slpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP-----------------------------------SVPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC-----------------------------------CCchHHHHH
Confidence 6788889998888 4443 35999999987641 112246788
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcEEE-EEc-c--EEEEeCEEEEeeCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRV-KTH-E--YEFMCRWLIVATGE 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v-~~~-~--~~~~~d~lVlAtG~ 139 (395)
.+.+.+++.|+++..+++|.+++..+ +.+.. ... + ..+.+|.+|+|+|.
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 88888888899999999999998765 33332 232 2 57999999999993
No 422
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.66 E-value=0.0047 Score=58.76 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=31.1
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||+|.+|.-+|..|++.|.+|.+++|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 469999999999999999999999999999986
No 423
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.65 E-value=0.0029 Score=60.68 Aligned_cols=34 Identities=35% Similarity=0.533 Sum_probs=31.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
.++|+|+|+|..|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4789999999999999999999999999999864
No 424
>PRK07045 putative monooxygenase; Reviewed
Probab=96.65 E-value=0.013 Score=55.06 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=31.5
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 479999999999999999999999999999988
No 425
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.62 E-value=0.01 Score=55.41 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=72.5
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCC---eEEEEEecCcee--eeccccCCCh-hHHHHHHHhhCChhHHHHHHHHhhhhhc
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGA---QVSLVVRDKVHI--LPKKILGRSS-FAISVWLLKWFPVDVVDRFLLFCSRLVL 246 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~---~V~~~~r~~~~~--~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (395)
.+|+|||+|.+|+.+|..|.+.-. .|+++..++..- +|.....+.. ..+....+..+.+....+|+.|++....
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 579999999999999999987522 388988877111 1211111000 0111111112212234566666654411
Q ss_pred c--chhhcCCCCCCCCCCcccCCCCCCcccChhhHhhhhcCC---eEEecC----ccEEec-C--eEEEeCCcEecCcEE
Q 039923 247 G--DTKQIGIQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGE---IKVVPG----IQKFTA-K--GAEFVNRTVKEFDSI 314 (395)
Q Consensus 247 ~--~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~----v~~~~~-~--~v~~~~g~~i~~D~v 314 (395)
. +.+..+...+.+++..+. + ..+.+.+...+..+. +..... +...+. . .+...+|....+|.+
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lf---G--~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~ 156 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLF---G--EYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADII 156 (474)
T ss_pred ccCChhhcCCccccccchhHH---H--HHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEE
Confidence 1 111111211222221110 0 011222333333333 443332 222211 1 255678889999999
Q ss_pred EEcCCCCCCCCc
Q 039923 315 ILATGYRSNVSS 326 (395)
Q Consensus 315 i~atG~~~~~~~ 326 (395)
|++||..+....
T Consensus 157 Vlatgh~~~~~~ 168 (474)
T COG4529 157 VLATGHSAPPAD 168 (474)
T ss_pred EEeccCCCCCcc
Confidence 999999987643
No 426
>PRK08013 oxidoreductase; Provisional
Probab=96.58 E-value=0.012 Score=55.54 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=31.3
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..|+|||+|.+|.-+|..|++.|.+|+++++++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 469999999999999999999999999999987
No 427
>PRK13984 putative oxidoreductase; Provisional
Probab=96.57 E-value=0.024 Score=56.63 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=26.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC------CEEEEe
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGV------PSLIIE 40 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~------~v~lie 40 (395)
.++|+|||||..|+-+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4789999999999999999998753 567654
No 428
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.56 E-value=0.011 Score=56.01 Aligned_cols=32 Identities=28% Similarity=0.636 Sum_probs=30.0
Q ss_pred eEEEECCCcCHHHHHHHHhhCC-CeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNG-AQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g-~~V~~~~r~~ 205 (395)
+|+|||+|..|+-+|..|.+.| .+|++++|++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 6999999999999999999988 4999999987
No 429
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.51 E-value=0.0031 Score=42.69 Aligned_cols=29 Identities=28% Similarity=0.631 Sum_probs=27.1
Q ss_pred EECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 177 VVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 177 VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
|||+|.+|+-.|..|++.|.+|+++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999988
No 430
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.51 E-value=0.0067 Score=56.66 Aligned_cols=32 Identities=22% Similarity=0.599 Sum_probs=30.1
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.|+|||+|.+|.-+|..|++.|.+|+++++.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 58999999999999999999999999999874
No 431
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0045 Score=54.64 Aligned_cols=94 Identities=20% Similarity=0.142 Sum_probs=72.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFITYM 90 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (395)
-+.+|||||+.++.||-.|.--|++|++.=|.--+-| ..+++.+..
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG----------------------------------FDqdmae~v 244 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG----------------------------------FDQDMAELV 244 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc----------------------------------ccHHHHHHH
Confidence 4689999999999999999999999998877542221 126777778
Q ss_pred HHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc------EEEEeCEEEEeeCC
Q 039923 91 EAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE------YEFMCRWLIVATGE 139 (395)
Q Consensus 91 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~------~~~~~d~lVlAtG~ 139 (395)
.+..+++|+.+...+....++..++ +.+.|...+ ..-.||.|+.|.|-
T Consensus 245 ~~~m~~~Gikf~~~~vp~~Veq~~~-g~l~v~~k~t~t~~~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 245 AEHMEERGIKFLRKTVPERVEQIDD-GKLRVFYKNTNTGEEGEEEYDTVLWAIGR 298 (503)
T ss_pred HHHHHHhCCceeecccceeeeeccC-CcEEEEeecccccccccchhhhhhhhhcc
Confidence 8888888999988877788887765 445554432 46689999999993
No 432
>PRK07588 hypothetical protein; Provisional
Probab=96.51 E-value=0.0073 Score=56.77 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=30.7
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 69999999999999999999999999999987
No 433
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.47 E-value=0.0047 Score=62.69 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=36.6
Q ss_pred CCcCCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 166 NGVEFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 166 ~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.+....+++|.|||+|.+|+-.|..|.+.|+.|++.+|++
T Consensus 1779 pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred CcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 3445689999999999999999999999999999999998
No 434
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.44 E-value=0.013 Score=55.19 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=31.3
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.-.|+|||+|.+|.-+|..|++.|.+|+++++.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3479999999999999999999999999999875
No 435
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.44 E-value=0.0073 Score=54.17 Aligned_cols=32 Identities=31% Similarity=0.613 Sum_probs=30.4
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999987
No 436
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.42 E-value=0.0032 Score=50.79 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=30.1
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
+|+|||||..|.++|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999874
No 437
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.41 E-value=0.017 Score=53.32 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc--EEEEeCEEEEeeCCCC
Q 039923 81 PSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE--YEFMCRWLIVATGENE 141 (395)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~--~~~~~d~lVlAtG~~~ 141 (395)
-..+++++.+...+++.+++++++++|+.+ .+ +.|.+.+.+ ..+++|.||+|||..+
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcEEEEECCCceEEecCEEEEcCCCcc
Confidence 367899999999999999999999999999 22 347787654 5799999999999643
No 438
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.39 E-value=0.0096 Score=50.75 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=25.3
Q ss_pred EEEECCCcCHHHHHHHHhhC--CCeEEEEEecC
Q 039923 175 VLVVGCGNSGMEISFDLCKN--GAQVSLVVRDK 205 (395)
Q Consensus 175 v~VvG~G~~a~e~a~~l~~~--g~~V~~~~r~~ 205 (395)
.+|||||..|+.+|..|+.. ..+|.++..++
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 58999999999999999865 45677776665
No 439
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.37 E-value=0.013 Score=56.06 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.4
Q ss_pred eEEEECCCcCHHHHHHHHhh----CCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCK----NGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~----~g~~V~~~~r~~ 205 (395)
.|+|||+|.+|+-+|..|++ .|.+|+++++++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 48999999999999999998 799999999954
No 440
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.37 E-value=0.044 Score=52.76 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=30.4
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..|+|||+|.+|+-.|..+++.|.+|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999999999999999999999998865
No 441
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.36 E-value=0.0072 Score=56.05 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=33.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 171 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.++++|||||.+|++.|.+|++.|.+|+++++.+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 46889999999999999999999999999999998
No 442
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.36 E-value=0.078 Score=52.44 Aligned_cols=92 Identities=16% Similarity=0.158 Sum_probs=61.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCcccccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERG-VPSLIIEKESCLASLWKLKIYDHLQLHLPKQFCQLPYVPFPREYPAYPSGQQFIT 88 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g-~~v~lie~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (395)
.++|+|||+|..|+.+|..+.+.+ .+|+|+.+.+... .+ ....++.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~------------------------------~~--~~~~~~~- 313 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTRED------------------------------MP--AHDEEIE- 313 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCccc------------------------------CC--CCHHHHH-
Confidence 578999999999999999999988 5788888764100 00 0112222
Q ss_pred HHHHHHHHcCCccccCceEEEEEEcCCCCcE-----EEEE------------cc--EEEEeCEEEEeeCC
Q 039923 89 YMEAYANHFEIEPLLGQEVQWAKYDAAMGHW-----RVKT------------HE--YEFMCRWLIVATGE 139 (395)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~-----~v~~------------~~--~~~~~d~lVlAtG~ 139 (395)
.+.+.++++++++.+.++...++ +.. .+.. .+ ..+.+|.||+|+|.
T Consensus 314 ----~a~~~GVki~~~~~~~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 314 ----EALREGVEINWLRTPVEIEGDEN-GATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQ 378 (564)
T ss_pred ----HHHHcCCEEEecCCcEEEEcCCC-CEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCC
Confidence 23456899988888888865432 221 1111 12 58999999999994
No 443
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.35 E-value=0.01 Score=55.62 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=30.7
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||+|.+|.-+|..|++.|.+|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 369999999999999999999999999999875
No 444
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.30 E-value=0.019 Score=54.23 Aligned_cols=33 Identities=21% Similarity=0.537 Sum_probs=31.6
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
++|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 689999999999999999999999999999987
No 445
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.30 E-value=0.01 Score=49.99 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=32.2
Q ss_pred CCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 170 FRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 170 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..+++|+|||||.+|..-+..|.+.|++|+++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468899999999999999999999999999986543
No 446
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.29 E-value=0.023 Score=56.41 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=33.5
Q ss_pred CCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 170 FRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 170 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.+..+|+|||||..|+-+|..|++.|.+|++++|.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 467789999999999999999999999999999976
No 447
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.29 E-value=0.01 Score=57.93 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=29.7
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.|+|||+|..|++.|..++..|.+|.++.++.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 48999999999999999999999999999874
No 448
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.29 E-value=0.011 Score=55.43 Aligned_cols=33 Identities=30% Similarity=0.622 Sum_probs=31.1
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 469999999999999999999999999999987
No 449
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.27 E-value=0.021 Score=53.79 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=30.4
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
+|+|||+|..|.-+|..|++.|.+|.++++.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 58999999999999999999999999999975
No 450
>PRK07190 hypothetical protein; Provisional
Probab=96.26 E-value=0.029 Score=54.22 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=31.2
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||+|.+|+-+|..|++.|.+|.++++.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 469999999999999999999999999999987
No 451
>PLN02697 lycopene epsilon cyclase
Probab=96.21 E-value=0.02 Score=55.65 Aligned_cols=33 Identities=30% Similarity=0.618 Sum_probs=29.8
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||+|.+|+-+|..+++.|.+|.++.+..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 469999999999999999999999999997653
No 452
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.17 E-value=0.0062 Score=58.73 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=33.6
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCc
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKER-GVPSLIIEKESCL 45 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~-g~~v~lie~~~~~ 45 (395)
...||.+|||||.||+.+|.+|.+. .++|+|+|+....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4469999999999999999999998 5799999998543
No 453
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.17 E-value=0.058 Score=51.58 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=32.1
Q ss_pred CCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 171 RASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 171 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..-.|+|||+|..|.-+|..|++.|.+|.++++++
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34579999999999999999999999999999976
No 454
>PRK06996 hypothetical protein; Provisional
Probab=96.14 E-value=0.011 Score=55.74 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=30.0
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCC----CeEEEEEecC
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNG----AQVSLVVRDK 205 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g----~~V~~~~r~~ 205 (395)
...|+|||+|.+|.-+|..|++.| .+|+++++.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 347999999999999999999886 4799999975
No 455
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.13 E-value=0.025 Score=53.17 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=31.4
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..|+|||+|..|+-+|..|++.|.+|+++++++
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 469999999999999999999999999999987
No 456
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.12 E-value=0.017 Score=48.53 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=31.7
Q ss_pred CCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEe
Q 039923 169 EFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVR 203 (395)
Q Consensus 169 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r 203 (395)
...+++|+|||||.+|...+..|.+.|++|+++.+
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 34789999999999999999999999999999864
No 457
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.10 E-value=0.03 Score=55.08 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=31.9
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
...|+|||+|.+|+-+|..|.+.|.+|++++|.+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4579999999999999999999999999999987
No 458
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.10 E-value=0.0042 Score=59.01 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=26.5
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.|+|||||..|+-.|..+++.|.+|.++++.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 38999999999999999999999999999987
No 459
>PRK10015 oxidoreductase; Provisional
Probab=96.08 E-value=0.014 Score=55.45 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=31.0
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||+|.+|.-+|..|++.|.+|.+++|.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 369999999999999999999999999999987
No 460
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.04 E-value=0.023 Score=51.90 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=31.1
Q ss_pred CCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 172 ASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 172 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..+|+|||||.+|+-.|..|.++|.+|.+++.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 3579999999999999999999999999998864
No 461
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.00 E-value=0.019 Score=48.73 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=31.0
Q ss_pred CCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEe
Q 039923 170 FRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVR 203 (395)
Q Consensus 170 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r 203 (395)
.++++|+|||||.+|..=+..|.+.|++||++..
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 4688999999999999999999999999999864
No 462
>PRK11445 putative oxidoreductase; Provisional
Probab=95.91 E-value=0.016 Score=53.52 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=29.3
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.|+|||+|.+|.-+|..|++. .+|++++|++
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 589999999999999999998 9999999987
No 463
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.89 E-value=0.013 Score=55.59 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 169 EFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 169 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
...+++|.|||+|+.|+..|..|...|+.||++.+.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 3467999999999999999999999999999998876
No 464
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.88 E-value=0.058 Score=50.67 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=29.6
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEec
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRD 204 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~ 204 (395)
.|+|||+|++|.-+|..|++.|.+|.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999999999997
No 465
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.78 E-value=0.015 Score=49.04 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=31.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
.++|+|||||..|..-+..|.+.|.+|+|++++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999999764
No 466
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.77 E-value=0.027 Score=49.52 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=25.1
Q ss_pred cCeEEEeCCcEecCcEEEEcCCCCCCCC
Q 039923 298 AKGAEFVNRTVKEFDSIILATGYRSNVS 325 (395)
Q Consensus 298 ~~~v~~~~g~~i~~D~vi~atG~~~~~~ 325 (395)
.+.|.+.+|++|.+|.+|.|+|..-+..
T Consensus 121 ~N~v~t~gg~eIsYdylviA~Giql~y~ 148 (446)
T KOG3851|consen 121 KNTVVTRGGEEISYDYLVIAMGIQLDYG 148 (446)
T ss_pred cCeEEccCCcEEeeeeEeeeeeceeccc
Confidence 3569999999999999999999999884
No 467
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.76 E-value=0.079 Score=48.51 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEccEEEEeCEEEEeeCCCCCCC
Q 039923 80 YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHEYEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~~~~~~d~lVlAtG~~~~~~ 144 (395)
.+....+...+.+.+.+.|++++.+++|+.++..++ +.+.|.+++.++.+|.||+|+|.++...
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~-~~~~v~~~~g~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGE-KVTAIVTPSGDVQADQVVLAAGAWAGEL 196 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCC-EEEEEEcCCCEEECCEEEEcCChhhhhc
Confidence 445677888888888999999999999999987652 2334666667899999999999876543
No 468
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.72 E-value=0.012 Score=48.48 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=28.2
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999875
No 469
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.70 E-value=0.04 Score=51.78 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=31.5
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
..|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 569999999999999999999999999999988
No 470
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.67 E-value=0.044 Score=51.96 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=29.8
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||||..|+|.|...++.|+++.++.-+.
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 369999999999999999999999998887665
No 471
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.016 Score=49.64 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=30.8
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
+++|||+|..|...|..|.+.|+.|+++|++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 68999999999999999999999999999986
No 472
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.59 E-value=0.021 Score=45.64 Aligned_cols=31 Identities=32% Similarity=0.575 Sum_probs=29.1
Q ss_pred EEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 175 VLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 175 v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
|+|+|+|.+|.-+|..|++.|.+|+++.|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998875
No 473
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.54 E-value=0.0097 Score=44.08 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=31.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
.++|+|||||..|..-+..|.+.|.+|+++.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4789999999999999999999999999999873
No 474
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.54 E-value=0.033 Score=52.14 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCCCCCC
Q 039923 80 YPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGENEVPV 144 (395)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~~~~~ 144 (395)
......+...+...+.+ |++++.+++|+.++..+ +.|.|++.+ ..+++|.||+|+|.|+...
T Consensus 131 ~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~~v~t~~g~~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGWQLLDANGEVIAASVVVLANGAQAGQL 193 (381)
T ss_pred ccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeEEEEeCCCCEEEcCEEEEcCCcccccc
Confidence 34456677777777778 99999999999998765 568888776 4589999999999876543
No 475
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.54 E-value=0.019 Score=46.11 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=30.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKE 42 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~ 42 (395)
.++|+|||||..|..-|..|.+.|.+|++|+++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 478999999999999999999999999999754
No 476
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.53 E-value=0.013 Score=43.42 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=31.2
Q ss_pred CCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEec
Q 039923 170 FRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRD 204 (395)
Q Consensus 170 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~ 204 (395)
.++++|+|||+|..|..-+..|.+.|++|+++.+.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 47899999999999999999999999999999876
No 477
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.50 E-value=0.13 Score=49.80 Aligned_cols=31 Identities=26% Similarity=0.598 Sum_probs=28.7
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
.|+|||+|.+|+-.|..+++.|. |+++++.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 59999999999999999999997 99999875
No 478
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.37 E-value=0.017 Score=53.83 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=31.3
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
++|+|||||.+|+++|..|++.|.+|+++++++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999999877
No 479
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.36 E-value=0.084 Score=49.41 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccCceEEEEEEcCCCCcEE-EEEcc---EEEEeCEEEEeeCCC
Q 039923 78 PAYPSGQQFITYMEAYANHFEIEPLLGQEVQWAKYDAAMGHWR-VKTHE---YEFMCRWLIVATGEN 140 (395)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~~-v~~~~---~~~~~d~lVlAtG~~ 140 (395)
|...+...+.+.+.+.+++.|+++..+++|..++..+ +.++ +.+++ .++.+|.+|+|+|.|
T Consensus 257 PPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 257 PPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCC
Confidence 4455678889999999999999999899999998776 4333 44444 489999999999976
No 480
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.32 E-value=0.035 Score=43.40 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=32.2
Q ss_pred CCCCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCC
Q 039923 8 FWTPGPVIVGAGPSGLAAAACLKERGVP-SLIIEKES 43 (395)
Q Consensus 8 ~~~~~vvIIG~G~aG~~~A~~l~~~g~~-v~lie~~~ 43 (395)
...++++|||+|-+|-.++.+|...|.+ ++|+.|..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 3458899999999999999999999986 99999864
No 481
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.31 E-value=0.053 Score=51.00 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=29.8
Q ss_pred CeEEEECCCcCHHHHHHHHhhC---CCeEEEEEec
Q 039923 173 SKVLVVGCGNSGMEISFDLCKN---GAQVSLVVRD 204 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~---g~~V~~~~r~ 204 (395)
-.|+|||+|.+|.-+|..|++. |.+|++++|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4699999999999999999998 9999999995
No 482
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.29 E-value=0.14 Score=49.33 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=30.7
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||+|.+|+-.|..+++.|.+|.++++.+
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 369999999999999999999999999999876
No 483
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=95.25 E-value=0.059 Score=50.72 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=31.0
Q ss_pred CeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 173 SKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 173 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
-.|+|||+|.+|.-+|..|++.|.+|.++++.+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~ 36 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGS 36 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCC
Confidence 359999999999999999999999999999987
No 484
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.22 E-value=0.029 Score=47.25 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=31.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKE 42 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~ 42 (395)
..++|+|||||-.|...|..|.+.|.+|+++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3578999999999999999999999999999865
No 485
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.18 E-value=0.027 Score=46.91 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=37.6
Q ss_pred CCCCCCCCCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 1 MSSKAKRFWTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 1 m~~~~~~~~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
|+.+.+...++.|.|||+|.-|...|.-.+..|++|.++|++.
T Consensus 2 ~s~s~~~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 2 MSASANMAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccccccccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 3444566677999999999999999999999999999999985
No 486
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.13 E-value=0.032 Score=44.56 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=29.2
Q ss_pred eEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 13 PVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 13 vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
|+|+|+|..|...|..|.+.|++|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999863
No 487
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.12 E-value=0.02 Score=47.46 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.2
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 039923 12 GPVIVGAGPSGLAAAACLKERGVPSLIIEKESC 44 (395)
Q Consensus 12 ~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~ 44 (395)
+|.|||.|+.|+.+|..|++.|++|+.+|.+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 589999999999999999999999999998863
No 488
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.07 E-value=0.027 Score=53.44 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHHHcCCccccCceEEEEEEcCCCCcEEEEEcc-EEEEeCEEEEeeCCC
Q 039923 93 YANHFEIEPLLGQEVQWAKYDAAMGHWRVKTHE-YEFMCRWLIVATGEN 140 (395)
Q Consensus 93 ~~~~~~~~~~~~~~V~~v~~~~~~~~~~v~~~~-~~~~~d~lVlAtG~~ 140 (395)
.+...+.+++++++|++|+..+ +.+.+++.+ +++.||+||+|+...
T Consensus 218 ~~~~~g~~i~l~~~V~~I~~~~--~~v~v~~~~g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 218 AAEELGGEIRLNTPVTRIERED--GGVTVTTEDGETIEADAVISAVPPS 264 (450)
T ss_dssp HHHHHGGGEESSEEEEEEEEES--SEEEEEETTSSEEEESEEEE-S-HH
T ss_pred HHhhcCceeecCCcceeccccc--cccccccccceEEecceeeecCchh
Confidence 4444466799999999999998 777788877 799999999999853
No 489
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.06 E-value=0.022 Score=53.39 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=30.6
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
+|+|||+|.+|+++|..|++.|.+|+++++++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 68999999999999999999999999999887
No 490
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.04 E-value=0.036 Score=49.51 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=31.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
+.+|.|||+|..|...|..++..|++|+++|..+
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3579999999999999999999999999999875
No 491
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.03 E-value=0.031 Score=50.58 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=31.0
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
.+|.|||+|..|...|..|++.|++|+++|+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 469999999999999999999999999999975
No 492
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.02 E-value=0.031 Score=52.58 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=35.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCcccccccCC
Q 039923 9 WTPGPVIVGAGPSGLAAAACLKERGVPSLIIEKESCLASLWKLKI 53 (395)
Q Consensus 9 ~~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~~~~g~~~~~~ 53 (395)
..+||+|+|-|..-..+|..|++.|.+|+-+|+++.-||.|..-.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~ 47 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN 47 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence 358999999999999999999999999999999999999876643
No 493
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.01 E-value=0.075 Score=48.48 Aligned_cols=86 Identities=24% Similarity=0.368 Sum_probs=0.0
Q ss_pred eEEEECCCcCHHHHHHHHhhCCCeEEEEEecCceeeeccccCCChhHHHHHHHhhCChhHHHHHHHHhhhhhccchhhcC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNGAQVSLVVRDKVHILPKKILGRSSFAISVWLLKWFPVDVVDRFLLFCSRLVLGDTKQIG 253 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 253 (395)
+|.|+|.|++|+-.+..|++.|++|+++...+..+ ..-+.|
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV---------------------------------------~~ln~g 42 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKV---------------------------------------ELLNKG 42 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHH---------------------------------------HHHhCC
Q ss_pred CCCCCCCCCcccCCCCCCcccChhhHhhhhcCCeEEecCccEEecCeEEEeCCc---EecCcEEEEcCCCCCCC
Q 039923 254 IQRPKMGPLQWKNSVGKTPVLDDGAFAKIKSGEIKVVPGIQKFTAKGAEFVNRT---VKEFDSIILATGYRSNV 324 (395)
Q Consensus 254 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~~g~---~i~~D~vi~atG~~~~~ 324 (395)
.. |+.++++.+.+++.. ....+.+++.. .-.+|.++.|+|.-+..
T Consensus 43 ~~----------------PI~EpgLe~ll~~~~----------~~gRl~fTtd~~~a~~~adv~fIavgTP~~~ 90 (414)
T COG1004 43 IS----------------PIYEPGLEELLKENL----------ASGRLRFTTDYEEAVKDADVVFIAVGTPPDE 90 (414)
T ss_pred CC----------------CCcCccHHHHHHhcc----------ccCcEEEEcCHHHHHhcCCEEEEEcCCCCCC
No 494
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.87 E-value=0.037 Score=44.48 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.3
Q ss_pred CCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEE
Q 039923 169 EFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVV 202 (395)
Q Consensus 169 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~ 202 (395)
...+++|+|||||.+|...+..|.+.|++|+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4578999999999999999999999999999984
No 495
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.84 E-value=0.041 Score=49.27 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=31.0
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 579999999999999999999999999999875
No 496
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.81 E-value=0.041 Score=43.03 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=30.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcCC-CEEEEecCC
Q 039923 11 PGPVIVGAGPSGLAAAACLKERGV-PSLIIEKES 43 (395)
Q Consensus 11 ~~vvIIG~G~aG~~~A~~l~~~g~-~v~lie~~~ 43 (395)
.+|+|||+|.-|..+|..|++.|. +++|+|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 579999999999999999999998 799999874
No 497
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.79 E-value=0.046 Score=49.43 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=31.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
.++|.|||+|..|...|..++..|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4679999999999999999999999999999875
No 498
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=94.77 E-value=0.059 Score=51.57 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=26.5
Q ss_pred eEEEECCCcCHHHHHHHHhhCC---CeEEEEEecC
Q 039923 174 KVLVVGCGNSGMEISFDLCKNG---AQVSLVVRDK 205 (395)
Q Consensus 174 ~v~VvG~G~~a~e~a~~l~~~g---~~V~~~~r~~ 205 (395)
+|+|||||..|.-+|..|++.+ .+|+++++..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 5899999999999999999987 7899999876
No 499
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.70 E-value=0.045 Score=49.04 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=31.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 039923 10 TPGPVIVGAGPSGLAAAACLKERGVPSLIIEKES 43 (395)
Q Consensus 10 ~~~vvIIG~G~aG~~~A~~l~~~g~~v~lie~~~ 43 (395)
..+|.|||+|..|...|..|++.|++|+++|+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 3579999999999999999999999999999874
No 500
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=94.69 E-value=0.047 Score=45.56 Aligned_cols=37 Identities=32% Similarity=0.638 Sum_probs=33.8
Q ss_pred CCCCCeEEEECCCcCHHHHHHHHhhCCCeEEEEEecC
Q 039923 169 EFRASKVLVVGCGNSGMEISFDLCKNGAQVSLVVRDK 205 (395)
Q Consensus 169 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 205 (395)
++....|+|||+|.+|+-.|..|++.|.+|.+++|+-
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 4566789999999999999999999999999999975
Done!