BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039924
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RKN|A Chain A, X-Ray Structure Of The Self-Defense And Signaling Protein
           Dir1 From Arabidopsis Taliana
          Length = 77

 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 29  AISICNIESSKMNLCLPAVSGKSPTQPTEQCCAVVSGAKLSCLCSYKN--LLPAFGINPK 86
           AI +C +   ++N C PAVS ++PT P++ CC  +  A  +CLC YKN   L +FG++P+
Sbjct: 1   AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPE 60

Query: 87  YALALPKKCGLETPPQC 103
            A ALPK+CGL   P C
Sbjct: 61  LASALPKQCGLANAPTC 77


>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
           Protein 1
          Length = 91

 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 82  GINPKYALALPKKCGLETP 100
           GINP  A ALP KCG+  P
Sbjct: 60  GINPNNAEALPGKCGVNIP 78


>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
           Of The Family Of Plant Non-Specific Lipid Transfer
           Protein Pan-Allergens
 pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
           Of The Family Of Plant Non-Specific Lipid Transfer
           Protein Pan-Allergens
 pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
           Of The Family Of Plant Non-Specific Lipid Transfer
           Protein Pan-Allergens
 pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
           Of The Family Of Plant Non-Specific Lipid Transfer
           Protein Pan-Allergens
          Length = 92

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 82  GINPKYALALPKKCGLETP 100
           G+NP  A ALP KCG+  P
Sbjct: 61  GVNPNNAAALPGKCGVSIP 79


>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
          Length = 324

 Score = 26.6 bits (57), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 6/34 (17%)

Query: 70  CLCSYKNLLPAFGINPKYAL------ALPKKCGL 97
           CLC+ KN L    I PK          +P  CGL
Sbjct: 78  CLCAIKNTLDYLNIEPKTGFKINISSKIPISCGL 111


>pdb|3N5N|X Chain X, Crystal Structure Analysis Of The Catalytic Domain And
           Interdomain Connector Of Human Muty Homologue
 pdb|3N5N|Y Chain Y, Crystal Structure Analysis Of The Catalytic Domain And
           Interdomain Connector Of Human Muty Homologue
          Length = 287

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 11  QRVVAFLFIASSVNGGAMAISICNIESSKMNLCLPAVSGKSPTQPTEQCCAVVS 64
           QRV     +AS    G+  +  C   + + +LCLP      P++P +Q   VV+
Sbjct: 232 QRVEQEQLLASGSLSGSPDVEECAPNTGQCHLCLP------PSEPWDQTLGVVN 279


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,889,837
Number of Sequences: 62578
Number of extensions: 96509
Number of successful extensions: 155
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 12
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)