Query 039924
Match_columns 106
No_of_seqs 104 out of 1027
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04660 nsLTP_like nsLTP_like: 99.7 8.5E-18 1.9E-22 103.5 4.1 71 33-103 1-73 (73)
2 cd01960 nsLTP1 nsLTP1: Non-spe 99.6 1.6E-16 3.6E-21 100.9 3.1 69 32-101 2-80 (89)
3 PF14368 LTP_2: Probable lipid 99.6 2.2E-16 4.7E-21 100.5 0.4 72 27-103 16-96 (96)
4 cd01959 nsLTP2 nsLTP2: Non-spe 99.5 8.5E-15 1.9E-19 88.8 3.8 62 38-103 4-66 (66)
5 cd00010 AAI_LTSS AAI_LTSS: Alp 99.4 9.9E-14 2.1E-18 82.5 3.0 57 40-97 1-63 (63)
6 smart00499 AAI Plant lipid tra 99.2 1.2E-11 2.6E-16 74.9 4.4 71 33-103 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 99.1 1.2E-12 2.6E-17 82.6 -5.3 65 38-103 13-90 (90)
8 PF14547 Hydrophob_seed: Hydro 95.4 0.0067 1.5E-07 38.4 1.1 72 33-104 2-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 94.9 0.024 5.1E-07 35.9 2.4 71 33-103 4-85 (85)
10 cd00261 AAI_SS AAI_SS: Alpha-A 91.3 0.05 1.1E-06 35.1 -0.3 66 39-104 14-109 (110)
11 PF07172 GRP: Glycine rich pro 82.8 1.5 3.3E-05 28.1 2.8 8 1-9 1-8 (95)
12 PLN00214 putative protein; Pro 61.8 3.6 7.7E-05 27.4 0.6 23 54-76 60-82 (115)
13 PF05617 Prolamin_like: Prolam 59.9 5.8 0.00013 23.3 1.3 21 53-73 26-46 (70)
14 PRK06287 cobalt transport prot 37.7 50 0.0011 21.5 3.2 29 1-30 1-29 (107)
15 PF11587 Prion_bPrPp: Major pr 23.3 52 0.0011 16.6 1.0 9 10-18 7-15 (29)
16 PRK10574 putative major pilin 20.9 89 0.0019 21.4 2.2 23 1-23 1-23 (146)
No 1
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.71 E-value=8.5e-18 Score=103.49 Aligned_cols=71 Identities=42% Similarity=0.912 Sum_probs=57.0
Q ss_pred ChhhhccccCCHHhhcCCCC-CCCchhHHHHhhccCCcccccccCCcccCCCCHHHHhhcccccCCCCC-CCC
Q 039924 33 CNIESSKMNLCLPAVSGKSP-TQPTEQCCAVVSGAKLSCLCSYKNLLPAFGINPKYALALPKKCGLETP-PQC 103 (106)
Q Consensus 33 C~~~~~~l~~C~~yl~~~~~-~~Ps~~CC~~l~~~~~~ClC~l~~~~~~~~in~~~a~~Lp~~Cg~~~p-~~C 103 (106)
|+..+..|.||++|++++++ .+|++.||+++|+++++|+|.+.+......||.++|.+||+.||+++| ++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p~~~C 73 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLPPSSC 73 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCCcCCEeeccCCCcccccCHHHHHHHHHHcCCCCCCCCC
Confidence 56667788999999998752 369999999999999999997433222226999999999999999987 455
No 2
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.63 E-value=1.6e-16 Score=100.85 Aligned_cols=69 Identities=30% Similarity=0.637 Sum_probs=58.2
Q ss_pred CChhhhccccCCHHhhcCCCCCCCchhHHHHhhcc--------CCccccc-ccCCcccC-CCCHHHHhhcccccCCCCCC
Q 039924 32 ICNIESSKMNLCLPAVSGKSPTQPTEQCCAVVSGA--------KLSCLCS-YKNLLPAF-GINPKYALALPKKCGLETPP 101 (106)
Q Consensus 32 ~C~~~~~~l~~C~~yl~~~~~~~Ps~~CC~~l~~~--------~~~ClC~-l~~~~~~~-~in~~~a~~Lp~~Cg~~~p~ 101 (106)
+|..+...|.||++|++|++ ..|++.||++++++ |++|+|. +++....+ +||++++.+||++||+++||
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~-~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGG-PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCC-CCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 68899999999999999876 58999999999996 3455555 77766666 49999999999999999765
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.58 E-value=2.2e-16 Score=100.49 Aligned_cols=72 Identities=38% Similarity=0.812 Sum_probs=46.7
Q ss_pred ccccCCChhhhccccCC---HHhhcCCCCCCCchhHHHHhhcc---CCcccccc-cCCc-ccCCCCHHHHhhcccccCCC
Q 039924 27 AMAISICNIESSKMNLC---LPAVSGKSPTQPTEQCCAVVSGA---KLSCLCSY-KNLL-PAFGINPKYALALPKKCGLE 98 (106)
Q Consensus 27 a~a~~~C~~~~~~l~~C---~~yl~~~~~~~Ps~~CC~~l~~~---~~~ClC~l-~~~~-~~~~in~~~a~~Lp~~Cg~~ 98 (106)
+....+|... |.+| ..|+.++ .+||++||+++|++ |+.|+|++ ++.. ..++||++|+..||+.||++
T Consensus 16 ~~~~~~c~~~---l~~c~~~~~~~~~~--~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~ 90 (96)
T PF14368_consen 16 AACCCSCANS---LLPCCPCLCYVTGG--PAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVP 90 (96)
T ss_dssp --BTTB-HCC---CCHH--HHHHHCC-------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS
T ss_pred CCCcchhHHH---HhccccchhccCCC--CCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCC
Confidence 3345567444 5555 8888855 48999999999996 78899994 4444 44589999999999999999
Q ss_pred CCC-CC
Q 039924 99 TPP-QC 103 (106)
Q Consensus 99 ~p~-~C 103 (106)
.|+ +|
T Consensus 91 ~~~~~C 96 (96)
T PF14368_consen 91 VPPSKC 96 (96)
T ss_dssp -S----
T ss_pred CCCCCC
Confidence 875 55
No 4
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.53 E-value=8.5e-15 Score=88.77 Aligned_cols=62 Identities=35% Similarity=0.760 Sum_probs=50.9
Q ss_pred ccccCCHHhhcCCCCCCCchhHHHHhhccCCccccccc-CCcccCCCCHHHHhhcccccCCCCCCCC
Q 039924 38 SKMNLCLPAVSGKSPTQPTEQCCAVVSGAKLSCLCSYK-NLLPAFGINPKYALALPKKCGLETPPQC 103 (106)
Q Consensus 38 ~~l~~C~~yl~~~~~~~Ps~~CC~~l~~~~~~ClC~l~-~~~~~~~in~~~a~~Lp~~Cg~~~p~~C 103 (106)
.+|.+|++|++++. +||++||+.+|+.+ .|+|+++ +......||.++|.+|+++||+++| +|
T Consensus 4 ~~L~~C~~ai~~~~--~Ps~~CC~~Lk~~~-~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P-~C 66 (66)
T cd01959 4 TQLSPCLPAILGGS--PPSAACCAKLKEQQ-SCLCQYAKNPSLKQYVNSPNARKVLAACGVPYP-NC 66 (66)
T ss_pred hhcccCHHHHhCCC--CCCHHHHHHHhcCC-CCeeeeecCccHHhhcCcHHHHHHHHHcCCCCC-CC
Confidence 37899999999763 79999999999965 8999964 4322226999999999999999985 55
No 5
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.42 E-value=9.9e-14 Score=82.49 Aligned_cols=57 Identities=35% Similarity=0.795 Sum_probs=47.0
Q ss_pred ccCCHHhhcCCCCCCCchhHHHHhhcc---CCccccc-ccCCcccC-CC-CHHHHhhcccccCC
Q 039924 40 MNLCLPAVSGKSPTQPTEQCCAVVSGA---KLSCLCS-YKNLLPAF-GI-NPKYALALPKKCGL 97 (106)
Q Consensus 40 l~~C~~yl~~~~~~~Ps~~CC~~l~~~---~~~ClC~-l~~~~~~~-~i-n~~~a~~Lp~~Cg~ 97 (106)
|.||++|+++++ ..||+.||++++++ ++.|+|+ +++..... ++ |.+++..||++||+
T Consensus 1 L~~C~~y~~~~~-~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGA-TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCC-CCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 579999999875 58999999999997 4689999 56644332 45 79999999999996
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.23 E-value=1.2e-11 Score=74.89 Aligned_cols=71 Identities=28% Similarity=0.696 Sum_probs=55.5
Q ss_pred ChhhhccccCCHHhhcCCC-CCCCchhHHHHhhcc-CCccccc-ccCCcccCC----CCHHHHhhcccccCCCCC-CCC
Q 039924 33 CNIESSKMNLCLPAVSGKS-PTQPTEQCCAVVSGA-KLSCLCS-YKNLLPAFG----INPKYALALPKKCGLETP-PQC 103 (106)
Q Consensus 33 C~~~~~~l~~C~~yl~~~~-~~~Ps~~CC~~l~~~-~~~ClC~-l~~~~~~~~----in~~~a~~Lp~~Cg~~~p-~~C 103 (106)
|......+.+|.+|+++.. ...|+..||++++++ +..|+|. +......+. ++..++..||+.||+..+ +.|
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~~~C 79 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPYTDC 79 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhcccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCCCCC
Confidence 5555666779999999763 347889999999999 8899998 444333332 599999999999999987 444
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=99.08 E-value=1.2e-12 Score=82.59 Aligned_cols=65 Identities=28% Similarity=0.709 Sum_probs=53.7
Q ss_pred ccccCCHHhhcCCCCCCCchhHHHHhhccCCccccc-ccCCccc-----------CCCCHHHHhhcccccCCCCCC-CC
Q 039924 38 SKMNLCLPAVSGKSPTQPTEQCCAVVSGAKLSCLCS-YKNLLPA-----------FGINPKYALALPKKCGLETPP-QC 103 (106)
Q Consensus 38 ~~l~~C~~yl~~~~~~~Ps~~CC~~l~~~~~~ClC~-l~~~~~~-----------~~in~~~a~~Lp~~Cg~~~p~-~C 103 (106)
..+.+|.+|++++. ..|+..||++|++++..|+|. ++..... .+++..+|..||+.||+++|+ .|
T Consensus 13 ~~l~~c~~~~~~~~-~~~~~~CC~~L~~l~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~~~C 90 (90)
T PF00234_consen 13 VRLSPCLPYLQGGC-QQPSQQCCQQLRQLDPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPYTDC 90 (90)
T ss_dssp SHHHGGHHHHTTSS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSSS-G
T ss_pred ccccccHHHHhccc-ccchHHHhHHHHHHhHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence 45899999999875 379999999999999999998 6654333 258999999999999999986 55
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=95.45 E-value=0.0067 Score=38.39 Aligned_cols=72 Identities=25% Similarity=0.606 Sum_probs=44.8
Q ss_pred ChhhhccccCCHHhhc--C-CCCCCCchhHHHHhhcc-CC---ccccc-ccCCccc-CCCCHH-HHhhcccccCCCCC--
Q 039924 33 CNIESSKMNLCLPAVS--G-KSPTQPTEQCCAVVSGA-KL---SCLCS-YKNLLPA-FGINPK-YALALPKKCGLETP-- 100 (106)
Q Consensus 33 C~~~~~~l~~C~~yl~--~-~~~~~Ps~~CC~~l~~~-~~---~ClC~-l~~~~~~-~~in~~-~a~~Lp~~Cg~~~p-- 100 (106)
|......|.-|.+.+. + ....++...||.-++.+ |. .|+|. +|...-. +++|.. ....|.+.||...|
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p~g 81 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVPSG 81 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCcCC
Confidence 4443446677888771 0 01125778899999997 32 49997 6553222 233333 45667788999876
Q ss_pred CCCC
Q 039924 101 PQCR 104 (106)
Q Consensus 101 ~~C~ 104 (106)
|+|.
T Consensus 82 f~C~ 85 (85)
T PF14547_consen 82 FTCP 85 (85)
T ss_pred CcCC
Confidence 6784
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=94.90 E-value=0.024 Score=35.92 Aligned_cols=71 Identities=25% Similarity=0.568 Sum_probs=43.6
Q ss_pred ChhhhccccCCHHhhcCCC---CCCCchhHHHHhhcc-C---Cccccc-ccCCcccCCCCHH-HHhhcccccCCCCC--C
Q 039924 33 CNIESSKMNLCLPAVSGKS---PTQPTEQCCAVVSGA-K---LSCLCS-YKNLLPAFGINPK-YALALPKKCGLETP--P 101 (106)
Q Consensus 33 C~~~~~~l~~C~~yl~~~~---~~~Ps~~CC~~l~~~-~---~~ClC~-l~~~~~~~~in~~-~a~~Lp~~Cg~~~p--~ 101 (106)
|.....++.-|..-+..-. ..+|...||.-++.+ | ..|+|. +|...-.+.+|.. +..-|-..||...| |
T Consensus 4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P~gf 83 (85)
T cd01958 4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNVPPGF 83 (85)
T ss_pred CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCcccccChhHHHHHHHHcCcCCCCC
Confidence 4444445667777663211 136778999999997 3 259997 6653322333333 44555678999976 5
Q ss_pred CC
Q 039924 102 QC 103 (106)
Q Consensus 102 ~C 103 (106)
+|
T Consensus 84 ~C 85 (85)
T cd01958 84 TC 85 (85)
T ss_pred cC
Confidence 66
No 10
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=91.31 E-value=0.05 Score=35.13 Aligned_cols=66 Identities=23% Similarity=0.512 Sum_probs=44.5
Q ss_pred cccCCHHhhcCCC-CC------------CCchhHHHHhhccCCccccc-ccCCcccC----------------CCCHHHH
Q 039924 39 KMNLCLPAVSGKS-PT------------QPTEQCCAVVSGAKLSCLCS-YKNLLPAF----------------GINPKYA 88 (106)
Q Consensus 39 ~l~~C~~yl~~~~-~~------------~Ps~~CC~~l~~~~~~ClC~-l~~~~~~~----------------~in~~~a 88 (106)
.|.+|..|+.-.. +. .....||+.++.++..|.|. |......+ ..-...|
T Consensus 14 ~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 93 (110)
T cd00261 14 PLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQAA 93 (110)
T ss_pred cCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCcHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHHHHH
Confidence 5789999986321 00 11356999999999899999 65421110 1235588
Q ss_pred hhcccccCCCCCCCCC
Q 039924 89 LALPKKCGLETPPQCR 104 (106)
Q Consensus 89 ~~Lp~~Cg~~~p~~C~ 104 (106)
..||..||+..+..|.
T Consensus 94 ~~Lp~~C~~~~~~~C~ 109 (110)
T cd00261 94 QNLPSMCNLYPPPYCP 109 (110)
T ss_pred HhhchhcCCCCCCCCC
Confidence 9999999999745674
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=82.85 E-value=1.5 Score=28.13 Aligned_cols=8 Identities=25% Similarity=0.355 Sum_probs=4.3
Q ss_pred CCCchhHHH
Q 039924 1 MGKPASRVL 9 (106)
Q Consensus 1 m~~~~~~~~ 9 (106)
|| ++++++
T Consensus 1 Ma-SK~~ll 8 (95)
T PF07172_consen 1 MA-SKAFLL 8 (95)
T ss_pred Cc-hhHHHH
Confidence 77 455443
No 12
>PLN00214 putative protein; Provisional
Probab=61.82 E-value=3.6 Score=27.41 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=17.8
Q ss_pred CCchhHHHHhhccCCcccccccC
Q 039924 54 QPTEQCCAVVSGAKLSCLCSYKN 76 (106)
Q Consensus 54 ~Ps~~CC~~l~~~~~~ClC~l~~ 76 (106)
++|.+||+.+-...+.|+=.+..
T Consensus 60 t~s~~CC~~LVk~GK~CH~~LiK 82 (115)
T PLN00214 60 TLIDPCCNDLVKEGKVCHDTLIK 82 (115)
T ss_pred CCchHHHHHHHHHhhHHHHHHHH
Confidence 67999999988877778766433
No 13
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=59.92 E-value=5.8 Score=23.27 Aligned_cols=21 Identities=14% Similarity=0.447 Sum_probs=18.1
Q ss_pred CCCchhHHHHhhccCCccccc
Q 039924 53 TQPTEQCCAVVSGAKLSCLCS 73 (106)
Q Consensus 53 ~~Ps~~CC~~l~~~~~~ClC~ 73 (106)
...+++||+++..++..|.=.
T Consensus 26 ~~i~~~CC~~i~~~g~~C~~~ 46 (70)
T PF05617_consen 26 KNIGPECCKAINKMGKDCHPA 46 (70)
T ss_pred CCCChHHHHHHHHHhHhHHHH
Confidence 478899999999998888775
No 14
>PRK06287 cobalt transport protein CbiN; Validated
Probab=37.73 E-value=50 Score=21.46 Aligned_cols=29 Identities=21% Similarity=0.017 Sum_probs=15.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhcccccc
Q 039924 1 MGKPASRVLVQRVVAFLFIASSVNGGAMAI 30 (106)
Q Consensus 1 m~~~~~~~~~~~~~~~l~~a~~~~~~a~a~ 30 (106)
|+++++. +..++++.++++.+++.-|.+.
T Consensus 1 ~~~~~~~-~~~~~~~all~a~~~s~~AS~~ 29 (107)
T PRK06287 1 MMDNKKF-LIAGLIVALLIAILAPFLASGD 29 (107)
T ss_pred CCcchhh-HHHHHHHHHHHHHHHHhhhcCC
Confidence 5654442 3345566666776666544433
No 15
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=23.28 E-value=52 Score=16.61 Aligned_cols=9 Identities=0% Similarity=0.069 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 039924 10 VQRVVAFLF 18 (106)
Q Consensus 10 ~~~~~~~l~ 18 (106)
..|+++++|
T Consensus 7 gcWilvLfv 15 (29)
T PF11587_consen 7 GCWILVLFV 15 (29)
T ss_dssp TTHHHHHHH
T ss_pred cHHHHHHHH
Confidence 556555554
No 16
>PRK10574 putative major pilin subunit; Provisional
Probab=20.91 E-value=89 Score=21.38 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHh
Q 039924 1 MGKPASRVLVQRVVAFLFIASSV 23 (106)
Q Consensus 1 m~~~~~~~~~~~~~~~l~~a~~~ 23 (106)
|...+.+.++-+++|+.+++++.
T Consensus 1 m~~q~GFTLIELmIViaIigILa 23 (146)
T PRK10574 1 MDKQRGFTLIELMVVIAIIAILS 23 (146)
T ss_pred CCccCceeHHHHHHHHHHHHHHH
Confidence 45555666666665555555443
Done!