BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039925
(549 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 32/293 (10%)
Query: 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLF 112
+G+ LR + L N GEIP+++ + LE L+L N +G+IP+ LS+C+N L +
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWIS 493
Query: 113 ICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPS 172
+ L+G++ +IG + ++ NS G P L + RSL + ++N N F+G IP+
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Query: 173 FIFNISLK--WNFLPENSF--------------TGNLPLEIGV---TLPKGRNYYILLLA 213
+F S K NF+ + GNL G+ L + +
Sbjct: 554 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 613
Query: 214 QKLYWSDVSTT------ATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPH 267
++Y S T + M N +SG I I + + L+ L + N +SG IP
Sbjct: 614 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY--LFILNLGHNDISGSIPD 671
Query: 268 HIASSXXXXXXXXXXXXXXXKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL 320
+ KL G +P ++ L E+ +S N LS +P +
Sbjct: 672 EVGD----LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 121/275 (44%), Gaps = 31/275 (11%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHL 118
L+ +N+ N F G IP L L+YL LA N F+G+IP LS + LT L + H
Sbjct: 246 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 119 SGQLLDFIGNPSAIQVMIFKENSLEGKFP-NTLSNLRSLFYDNINRNEFSGLIPSFIFNI 177
G + F G+ S ++ + N+ G+ P +TL +R L +++ NEFSG +P + N+
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 178 --SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATI-------- 227
SL L N+F+G + L PK Q+LY + T I
Sbjct: 364 SASLLTLDLSSNNFSGPI-LPNLCQNPKNT-------LQELYLQNNGFTGKIPPTLSNCS 415
Query: 228 ----IAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXX 283
+ + N +SGTI + L L L + N L G IP +
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQEL----MYVKTLETLI 469
Query: 284 XXXXKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318
L G +PS L NL +S+S N+L+ +P
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 122/256 (47%), Gaps = 32/256 (12%)
Query: 67 NNFRGEIP-EKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLL-D 124
NNF GE+P + + ++ L+ L L+ N FSG++P +L++ S L L + + SG +L +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 125 FIGNP-SAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWN 182
NP + +Q + + N GK P TLSN L +++ N SG IPS + ++S L+
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 183 FLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLG 242
L N G +P E+ +Y V T T+I + N ++G I G
Sbjct: 445 KLWLNMLEGEIPQEL------------------MY---VKTLETLI-LDFNDLTGEIPSG 482
Query: 243 IKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXXXXXKLQGNLPSSLGYYQN 302
+ NL +++ N+L+G IP I GN+P+ LG ++
Sbjct: 483 LSNC--TNLNWISLSNNRLTGEIPKWIG----RLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 303 LMELSVSRNKLSASLP 318
L+ L ++ N + ++P
Sbjct: 537 LIWLDLNTNLFNGTIP 552
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 57 GYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICET 116
G L+ + + N G++ V R LE+L +++N+FS IP
Sbjct: 175 GELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP------------------ 214
Query: 117 HLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN 176
F+G+ SA+Q + N L G F +S L NI+ N+F G IP
Sbjct: 215 --------FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK 266
Query: 177 ISLKWNFLPENSFTGNLP 194
SL++ L EN FTG +P
Sbjct: 267 -SLQYLSLAENKFTGEIP 283
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 25/122 (20%)
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109
+P N G + F+++ N G IP+++G + L L L +N SG IP
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP----------- 670
Query: 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL 169
D +G+ + ++ N L+G+ P +S L L +++ N SG
Sbjct: 671 --------------DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 716
Query: 170 IP 171
IP
Sbjct: 717 IP 718
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 42 HQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIP 98
H I+ + VG+ L ++L N G IP+ + L L + L+NN+ SG IP
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 47/329 (14%)
Query: 7 LLAIKSLLHDRRGVTSSWSNSIDLCQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVD 66
L++ K +L D+ + WS++ + C + GVTC + + L+ N G+
Sbjct: 14 LISFKDVLPDKN-LLPDWSSNKNPCTFDGVTC-RDDKVTSIDLSSKPLNVGF-------- 63
Query: 67 NNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQL--LD 124
+ + L LE L L+N+H +G + CS LT L + LSG + L
Sbjct: 64 ----SAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLT 117
Query: 125 FIGNPSAIQVMIFKENSLEGKFPNTLSN---LRSLFYDNINRNEFSGL-IPSFIFNIS-- 178
+G+ S ++ + N+L+ FP +S L SL +++ N SG + ++ +
Sbjct: 118 SLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 175
Query: 179 -LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAM-----GG 232
LK + N +G+ V + + N L ++ + + + A+ G
Sbjct: 176 ELKHLAISGNKISGD------VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISG 229
Query: 233 NQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXXXXXKLQGN 292
N++SG + I + L L + N+ GPIP S K G
Sbjct: 230 NKLSGDFSRAISTCTELKL--LNISSNQFVGPIPPLPLKS------LQYLSLAENKFTGE 281
Query: 293 LPSSL-GYYQNLMELSVSRNKLSASLPPL 320
+P L G L L +S N ++PP
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 32/293 (10%)
Query: 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLF 112
+G+ LR + L N GEIP+++ + LE L+L N +G+IP+ LS+C+N L +
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWIS 496
Query: 113 ICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPS 172
+ L+G++ +IG + ++ NS G P L + RSL + ++N N F+G IP+
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 173 FIFNISLK--WNFLPENSF--------------TGNLPLEIGV---TLPKGRNYYILLLA 213
+F S K NF+ + GNL G+ L + +
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616
Query: 214 QKLYWSDVSTT------ATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPH 267
++Y S T + M N +SG I I + + L+ L + N +SG IP
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY--LFILNLGHNDISGSIPD 674
Query: 268 HIASSXXXXXXXXXXXXXXXKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL 320
+ KL G +P ++ L E+ +S N LS +P +
Sbjct: 675 EVGD----LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 121/275 (44%), Gaps = 31/275 (11%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHL 118
L+ +N+ N F G IP L L+YL LA N F+G+IP LS + LT L + H
Sbjct: 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 119 SGQLLDFIGNPSAIQVMIFKENSLEGKFP-NTLSNLRSLFYDNINRNEFSGLIPSFIFNI 177
G + F G+ S ++ + N+ G+ P +TL +R L +++ NEFSG +P + N+
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 178 --SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATI-------- 227
SL L N+F+G + L PK Q+LY + T I
Sbjct: 367 SASLLTLDLSSNNFSGPI-LPNLCQNPKNT-------LQELYLQNNGFTGKIPPTLSNCS 418
Query: 228 ----IAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXX 283
+ + N +SGTI + L L L + N L G IP +
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQEL----MYVKTLETLI 472
Query: 284 XXXXKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318
L G +PS L NL +S+S N+L+ +P
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 122/256 (47%), Gaps = 32/256 (12%)
Query: 67 NNFRGEIP-EKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLL-D 124
NNF GE+P + + ++ L+ L L+ N FSG++P +L++ S L L + + SG +L +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 125 FIGNP-SAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWN 182
NP + +Q + + N GK P TLSN L +++ N SG IPS + ++S L+
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 183 FLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLG 242
L N G +P E+ +Y V T T+I + N ++G I G
Sbjct: 448 KLWLNMLEGEIPQEL------------------MY---VKTLETLI-LDFNDLTGEIPSG 485
Query: 243 IKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXXXXXKLQGNLPSSLGYYQN 302
+ NL +++ N+L+G IP I GN+P+ LG ++
Sbjct: 486 LSNC--TNLNWISLSNNRLTGEIPKWIG----RLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 303 LMELSVSRNKLSASLP 318
L+ L ++ N + ++P
Sbjct: 540 LIWLDLNTNLFNGTIP 555
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 57 GYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICET 116
G L+ + + N G++ V R LE+L +++N+FS IP
Sbjct: 178 GELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP------------------ 217
Query: 117 HLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN 176
F+G+ SA+Q + N L G F +S L NI+ N+F G IP
Sbjct: 218 --------FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK 269
Query: 177 ISLKWNFLPENSFTGNLP 194
SL++ L EN FTG +P
Sbjct: 270 -SLQYLSLAENKFTGEIP 286
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 25/122 (20%)
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109
+P N G + F+++ N G IP+++G + L L L +N SG IP
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP----------- 673
Query: 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL 169
D +G+ + ++ N L+G+ P +S L L +++ N SG
Sbjct: 674 --------------DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719
Query: 170 IP 171
IP
Sbjct: 720 IP 721
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 42 HQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIP 98
H I+ + VG+ L ++L N G IP+ + L L + L+NN+ SG IP
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 47/329 (14%)
Query: 7 LLAIKSLLHDRRGVTSSWSNSIDLCQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVD 66
L++ K +L D+ + WS++ + C + GVTC + + L+ N G+
Sbjct: 17 LISFKDVLPDKN-LLPDWSSNKNPCTFDGVTC-RDDKVTSIDLSSKPLNVGF-------- 66
Query: 67 NNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQL--LD 124
+ + L LE L L+N+H +G + CS LT L + LSG + L
Sbjct: 67 ----SAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLT 120
Query: 125 FIGNPSAIQVMIFKENSLEGKFPNTLSN---LRSLFYDNINRNEFSGL-IPSFIFNIS-- 178
+G+ S ++ + N+L+ FP +S L SL +++ N SG + ++ +
Sbjct: 121 SLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178
Query: 179 -LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAM-----GG 232
LK + N +G+ V + + N L ++ + + + A+ G
Sbjct: 179 ELKHLAISGNKISGD------VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISG 232
Query: 233 NQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXXXXXKLQGN 292
N++SG + I + L L + N+ GPIP S K G
Sbjct: 233 NKLSGDFSRAISTCTELKL--LNISSNQFVGPIPPLPLKS------LQYLSLAENKFTGE 284
Query: 293 LPSSL-GYYQNLMELSVSRNKLSASLPPL 320
+P L G L L +S N ++PP
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 120/312 (38%), Gaps = 79/312 (25%)
Query: 3 DHLALLAIKSLLHDRRGVTSSWSNSIDLCQ--WRGVTCTHQHQ--RINKC---------- 48
D ALL IK L + + SSW + D C W GV C Q R+N
Sbjct: 7 DKQALLQIKKDLGNPTTL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65
Query: 49 --LTPHVGNFGYLRFINLVD-NNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCS 105
+ + N YL F+ + NN G IP + +L +L YL
Sbjct: 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL------------------- 106
Query: 106 NLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFP---NTLSNLRSLFYD--- 159
+I T++SG + DF+ + + F N+L G P ++L NL + +D
Sbjct: 107 ------YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 160 -------------------NINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVT 200
I+RN +G IP N++L + L N G+ + G
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG-- 218
Query: 201 LPKGRNYYILLLAQKLYWSDVSTTATIIAMGG-----NQISGTITLGIKKLIFVNLYALT 255
+N + LA+ D+ + G N+I GT+ G+ +L F L++L
Sbjct: 219 --SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLN 274
Query: 256 MVKNKLSGPIPH 267
+ N L G IP
Sbjct: 275 VSFNNLCGEIPQ 286
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 251 LYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXXXXXKLQGNLPSSLGYYQNLM-ELSVS 309
L L N LSG +P I+S ++ G +P S G + L +++S
Sbjct: 127 LVTLDFSYNALSGTLPPSISS----LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 310 RNKLSASLPPLNSQHNHSF 328
RN+L+ +PP + N +F
Sbjct: 183 RNRLTGKIPPTFANLNLAF 201
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 231 GGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXXXXXKLQ 290
G N + G I I KL L+ L + +SG IP ++ L
Sbjct: 85 GINNLVGPIPPAIAKL--TQLHYLYITHTNVSGAIPDFLSQ----IKTLVTLDFSYNALS 138
Query: 291 GNLPSSLGYYQNLMELSVSRNKLSASLP 318
G LP S+ NL+ ++ N++S ++P
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIP 166
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 391 STVTNEFSSSNMIGQGSFGSVYKGILGE 418
++ FS+ N++G+G FG VYKG L +
Sbjct: 34 QVASDNFSNKNILGRGGFGKVYKGRLAD 61
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 32/131 (24%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGE-------KWTAGYSEGTDFKG------------- 432
TN F +IG G FG VYKG+L + + T S+G +
Sbjct: 37 ATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPH 96
Query: 433 ----IDF------KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEY 482
I F +++ YM+N +L+ Y S+ L S+S ++L I A + Y
Sbjct: 97 LVSLIGFCDERNEMILIYKYMENGNLKRHLYGSD--LPTMSMSWEQRLEICIGAARGLHY 154
Query: 483 LRVKMALPEKV 493
L + + V
Sbjct: 155 LHTRAIIHRDV 165
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 32/131 (24%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGE-------KWTAGYSEGTDFKG------------- 432
TN F +IG G FG VYKG+L + + T S+G +
Sbjct: 37 ATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPH 96
Query: 433 ----IDF------KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEY 482
I F +++ YM+N +L+ Y S+ L S+S ++L I A + Y
Sbjct: 97 LVSLIGFCDERNEMILIYKYMENGNLKRHLYGSD--LPTMSMSWEQRLEICIGAARGLHY 154
Query: 483 LRVKMALPEKV 493
L + + V
Sbjct: 155 LHTRAIIHRDV 165
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 391 STVTNEFSSSNMIGQGSFGSVYKGILGE 418
++ F + N++G+G FG VYKG L +
Sbjct: 26 QVASDNFXNKNILGRGGFGKVYKGRLAD 53
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 397 FSSSNMIGQGSFGSVYKGI 415
F+ + IG+GSFG VYKGI
Sbjct: 21 FTKLDRIGKGSFGEVYKGI 39
>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With
4-(4-
Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One
pdb|3T9I|A Chain A, Pim1 Complexed With A Novel 3,6-Disubstituted Indole At
2.6 Ang Resolution
Length = 328
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 49 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 93
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 94 ELPNGTRVPMEVVLLKKVSS 113
>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With
Inhibitor
pdb|3BGP|A Chain A, Human Pim-1 Complexed With A Benzoisoxazole Inhibitor Vx1
pdb|3BGQ|A Chain A, Human Pim-1 Kinase In Complex With An Triazolo Pyridazine
Inhibitor Vx2
pdb|3BGZ|A Chain A, Human Pim-1 Kinase In Complex With Diphenyl Indole
Inhibitor Vx3
Length = 333
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 54 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 98
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 99 ELPNGTRVPMEVVLLKKVSS 118
>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Pyrrolo[2,3- A]carbazole Ligand
pdb|3QF9|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Furan- Thiazolidinedione Ligand
pdb|4GW8|A Chain A, Human Proto-Oncogene Serine Threonine Kinase (Pim1) In
Complex With A Consensus Peptide And Leucettine L41
Length = 313
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 35 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 79
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 80 ELPNGTRVPMEVVLLKKVSS 99
>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its
Consensus Peptide Pimtide
pdb|2BZJ|A Chain A, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru3
pdb|2BZK|B Chain B, Crystal Structure Of The Human Pim1 In Complex With Amppnp
And Pimtide
pdb|2C3I|B Chain B, Crystal Structure Of Human Pim1 In Complex With
Imidazopyridazin I
pdb|2BZH|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2OI4|X Chain X, Crystal Structure Of Human Pim1 In Complex With
Fluorinated Ruthenium Pyridocarbazole
pdb|3BWF|A Chain A, Crystal Structure Of The Human Pim1 In Complex With An
Osmium Compound
Length = 313
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 34 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 78
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 79 ELPNGTRVPMEVVLLKKVSS 98
>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And
The Jnk Inhibitor V
Length = 314
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 35 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 79
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 80 ELPNGTRVPMEVVLLKKVSS 99
>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261
pdb|2BZI|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru2
Length = 313
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 34 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 78
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 79 ELPNGTRVPMEVVLLKKVSS 98
>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Naphtho-Difuran Ligand
Length = 313
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 35 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 79
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 80 ELPNGTRVPMEVVLLKKVSS 99
>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With
Ly333531
Length = 312
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 34 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 78
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 79 ELPNGTRVPMEVVLLKKVSS 98
>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand I
pdb|3CY2|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand Ii
Length = 314
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 35 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 79
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 80 ELPNGTRVPMEVVLLKKVSS 99
>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain
Length = 313
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 34 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 78
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 79 ELPNGTRVPMEVVLLKKVSS 98
>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of
P27kip1 Carboxy-Terminal Peptide
Length = 320
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 41 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 85
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 86 ELPNGTRVPMEVVLLKKVSS 105
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 49 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 76
>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa
Length = 300
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 21 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 65
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 66 ELPNGTRVPMEVVLLKKVSS 85
>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From
Crystallographic Fragment Screen
Length = 301
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 22 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 66
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 67 ELPNGTRVPMEVVLLKKVSS 86
>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From
Crystallographic Fragment Screen
pdb|2XIZ|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-3 From
Crystallographic Fragment Screen
pdb|2XJ1|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inibitor
pdb|2XJ2|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inhibitor
Length = 301
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 22 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 66
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 67 ELPNGTRVPMEVVLLKKVSS 86
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 25 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 52
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 9 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 36
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 19 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 46
>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
pdb|4ALW|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 49 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 93
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 94 ELPNGTRVPMEVVLLKKVSS 113
>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution
pdb|1XR1|A Chain A, Crystal Structure Of Hpim-1 Kinase In Complex With Amp-Pnp
At 2.1 A Resolution
Length = 300
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 21 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 65
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 66 ELPNGTRVPMEVVLLKKVSS 85
>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From
Crystallographic Fragment Screen
Length = 301
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 22 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 66
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 67 ELPNGTRVPMEVVLLKKVSS 86
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 12 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 39
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 42
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 42
>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546
Length = 308
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 29 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 73
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 74 ELPNGTRVPMEVVLLKKVSS 93
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 16 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 43
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 16 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 43
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 42
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 42
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 42
>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors
Length = 273
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 2 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 46
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 47 ELPNGTRVPMEVVLLKKVSS 66
>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R01|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R02|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R04|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3VBQ|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBT|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBV|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBW|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBX|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBY|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VC4|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
Length = 299
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 7 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 51
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 52 ELPNGTRVPMEVVLLKKVSS 71
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 44
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 21 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 48
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 45
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 22 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 49
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 45
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 44
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 45
>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|B Chain B, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|C Chain C, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|D Chain D, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
Length = 273
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 2 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 46
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 47 ELPNGTRVPMEVVLLKKVSS 66
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 44
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 44
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 45
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 22 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 49
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 44
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 19 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 46
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL---GEK 419
EF ++G G+FG+VYKG+ GEK
Sbjct: 40 TEFKKIKVLGSGAFGTVYKGLWIPEGEK 67
>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JY0|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JYA|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
Length = 294
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 7 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 51
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 52 ELPNGTRVPMEVVLLKKVSS 71
>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine
pdb|1YI3|A Chain A, Crystal Structure Of Pim-1 Bound To Ly294002
pdb|1YI4|A Chain A, Structure Of Pim-1 Bound To Adenosine
Length = 273
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 2 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 46
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 47 ELPNGTRVPMEVVLLKKVSS 66
>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor
Length = 276
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 5 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 49
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 50 ELPNGTRVPMEVVLLKKVSS 69
>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target
Of Aberrant Somatic Hypermutations In Diffuse Large Cell
Lymphoma
pdb|1YXT|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amppnp
pdb|1YXU|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|B Chain B, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|C Chain C, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|D Chain D, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXV|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
3,4-Dihydroxy-1- Methylquinolin-2(1h)-One
pdb|1YXX|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
(3e)-3-[(4- Hydroxyphenyl)imino]-1h-Indol-2(3h)-One
pdb|2O3P|A Chain A, Crystal Structure Of Pim1 With Quercetin
pdb|2O63|A Chain A, Crystal Structure Of Pim1 With Myricetin
pdb|2O64|A Chain A, Crystal Structure Of Pim1 With Quercetagetin
pdb|2O65|A Chain A, Crystal Structure Of Pim1 With Pentahydroxyflavone
Length = 293
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 6 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 50
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 51 ELPNGTRVPMEVVLLKKVSS 70
>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation
Length = 293
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 6 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 50
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 51 ELPNGTRVPMEVVLLKKVSS 70
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 388 LSPSTVTNEFSSSNMIGQGSFGSVYKGIL 416
+ PS VT + +IG G FG VYKG+L
Sbjct: 41 IHPSCVTRQ----KVIGAGEFGEVYKGML 65
>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small
Molecule Inhibitor
pdb|3UMX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indol-3-Yl)methylene]-7-(Azepan-1-Ylmethyl)-6-
Hydroxybenzofuran- 3(2h)-One
pdb|4ENX|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
Inhibitor (2e,5z)-2-
(2-Chlorophenylimino)-5-(4-Hydroxy-3-
Nitrobenzylidene)thiazolidin-4- One
pdb|4ENY|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
(2e,5z)-2-(2-
Chlorophenylimino)-5-(4-Hydroxy-3-
Methoxybenzylidene)thiazolidin-4- One
pdb|3UMW|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indazol-3-Yl)methylene]-6-Methoxy-7-(Piperazin-1-
Ylmethyl)benzofuran- 3(2h)-One
Length = 298
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDFKAVVFDYMQNRSLEDWP 452
+ +++ ++G G FGSVY GI + D V +++ + DW
Sbjct: 7 LESQYQVGPLLGSGGFGSVYSGI---------------RVSDNLPVAIKHVEKDRISDWG 51
Query: 453 YQSNNKLKPSSLSMIRKLST 472
N P + +++K+S+
Sbjct: 52 ELPNGTRVPMEVVLLKKVSS 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,263,817
Number of Sequences: 62578
Number of extensions: 605416
Number of successful extensions: 1618
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1503
Number of HSP's gapped (non-prelim): 93
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)