BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039926
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ACL|A Chain A, Crystal Structure Of Human Pirin In Complex With Triphenyl
Compound
Length = 296
Score = 321 bits (823), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 155/283 (54%), Positives = 196/283 (69%), Gaps = 2/283 (0%)
Query: 15 RSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETV 74
+ V L+R Q EG+GA VRRSIGR EL+ DPFL+ DEF P GFPDHPHRGFETV
Sbjct: 11 KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETV 70
Query: 75 TYMLQG-AVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKY 133
+Y+L+G ++ HEDF GH G + PGDLQWMTAGRGI+H+EMP ++ GLQLW+NL S
Sbjct: 71 SYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSE 130
Query: 134 KMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQ 193
KM+EP+YQE+ S++I + +KDG+ V VI+GEALG+KS +YTRTPT+YLDF L PGA Q
Sbjct: 131 KMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQ 190
Query: 194 PILRSWNAFVYVLEGEGLFGTVKS-SPVSAHHXXXXXXXXXXEAWNKFSKPLRFVLVGGE 252
PI + W +F+Y + G+ G + + HH + NK K FVL+ GE
Sbjct: 191 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGE 250
Query: 253 PIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSE 295
P+ EPV Q GPFVMNT EEI Q I DF N NGFE+AK W+S+
Sbjct: 251 PLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSK 293
>pdb|1J1L|A Chain A, Crystal Structure Of Human Pirin: A Bcl-3 And Nuclear
Factor I Interacting Protein And A Cupin Superfamily
Member
Length = 290
Score = 309 bits (792), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 151/283 (53%), Positives = 190/283 (67%), Gaps = 2/283 (0%)
Query: 15 RSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETV 74
+ V L+R Q EG+GA VRRSIGR EL+ DPFL+ DEF P GFPDHPHRGFETV
Sbjct: 5 KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETV 64
Query: 75 TYMLQG-AVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKY 133
+Y+L+G + HEDF GH G PGDLQW TAGRGI+H+E P ++ GLQLW+NL S
Sbjct: 65 SYLLEGGSXAHEDFCGHTGKXNPGDLQWXTAGRGILHAEXPCSEEPAHGLQLWVNLRSSE 124
Query: 134 KMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQ 193
K +EP+YQE+ S++I + +KDG+ V VI+GEALG+KS +YTRTPT+YLDF L PGA Q
Sbjct: 125 KXVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQ 184
Query: 194 PILRSWNAFVYVLEGEGLFGTVKS-SPVSAHHXXXXXXXXXXEAWNKFSKPLRFVLVGGE 252
PI + W +F+Y + G+ G + + HH + NK K FVL+ GE
Sbjct: 185 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGE 244
Query: 253 PIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSE 295
P+ EPV Q GPFV NT EEI Q I DF N NGFE+AK W+S+
Sbjct: 245 PLREPVIQHGPFVXNTNEEISQAILDFRNAKNGFERAKTWKSK 287
>pdb|2P17|A Chain A, Crystal Structure Of Gk1651 From Geobacillus Kaustophilus
Length = 277
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 135/237 (56%), Gaps = 3/237 (1%)
Query: 46 FDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAG 105
+DPFL+L E + F HPHRG ETVTY++ G + H D + T+GPGD+QW TAG
Sbjct: 36 YDPFLLLXE-DIFERGTFDVHPHRGIETVTYVISGELEHFDSKAGHSTLGPGDVQWXTAG 94
Query: 106 RGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEA 165
RG+VH E PA+ T LQLW+NL S YK EPRYQ + SKD ++G +RV +G +
Sbjct: 95 RGVVHKEDPASGSTVHSLQLWVNLPSAYKXTEPRYQNLRSKDXPVRKEEGATIRVFSGSS 154
Query: 166 LGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFG--TVKSSPVSAH 223
GVK+P P ++ ++PG + Q + +N F+Y+LEG G+FG ++ A
Sbjct: 155 KGVKAPTKNIVPVTXVEXIVEPGTTVVQDLPGHYNGFLYILEGSGVFGADNIEGKAGQAL 214
Query: 224 HXXXXXXXXXXEAWNKFSKPLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFE 280
E + LR +L GEP+ EPV GPFV NT E+I + I D++
Sbjct: 215 FFSRHNRGEETELNVTAREKLRLLLYAGEPVNEPVVAYGPFVXNTPEQIREAIRDYQ 271
>pdb|1TQ5|A Chain A, Crystal Structure Of Yhhw From Escherichia Coli
Length = 242
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 45 YFDP-------FLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPG 97
Y+DP V+++ + A GF HPH+ E +TY+L+G V H+D G+K + G
Sbjct: 29 YYDPNFXGFSALRVINDDVIEAGQGFGTHPHKDXEILTYVLEGTVEHQDSXGNKEQVPAG 88
Query: 98 DLQWMTAGRGIVHSEM-PAAQGTQKGLQLWINLSSKYKMIEPRYQE 142
+ Q +AG GI HSE P++ Q+WI + I PRY++
Sbjct: 89 EFQIXSAGTGIRHSEYNPSSTERLHLYQIWI--XPEENGITPRYEQ 132
>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
Length = 766
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 146 KDIAEAAKDGIKVRVIAGEALGVKS---PIYTRTPTMYLDFT 184
+D+A++ + G VI G ALG KS PI+ ++++ FT
Sbjct: 434 QDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFT 475
>pdb|2Q1Z|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Q1Z|D Chain D, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
Length = 195
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 63 FPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQ 100
PDH HRG E +T +LQGA F G GD++
Sbjct: 138 VPDHGHRGLE-LTLVLQGA-----FRDETDRFGAGDIE 169
>pdb|2Z2S|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Z2S|D Chain D, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Z2S|F Chain F, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
pdb|2Z2S|H Chain H, Crystal Structure Of Rhodobacter Sphaeroides Sige In
Complex With The Anti-Sigma Chrr
Length = 203
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 64 PDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQ 100
PDH HRG E +T +LQGA F G GD++
Sbjct: 139 PDHGHRGLE-LTLVLQGA-----FRDETDRFGAGDIE 169
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 249 VGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFEN 281
VGG P+ E V + + QEE+DQ +DD +N
Sbjct: 191 VGGVPVSELVEKNDAY---KQEELDQIVDDVKN 220
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 249 VGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFEN 281
VGG P+ E V + + QEE+DQ +DD +N
Sbjct: 191 VGGVPVSELVEKNDAY---KQEELDQIVDDVKN 220
>pdb|2HR9|A Chain A, Solution Structure Of Human Translationally Controlled
Tumor Protein
Length = 180
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 20/146 (13%)
Query: 140 YQEVSSKDIAEAAKDGIKVRVIA-GEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRS 198
Y+++ S D E D K+R IA G L V+ + +RT D + A P
Sbjct: 4 YRDLISHD--EMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGP---- 57
Query: 199 WNAFVYVLEGEGLFGTVKS--SPVSAHHXXXXXXXXXXEAWNKFSKPLRFVLVGGEPIGE 256
EGEG TV + V HH EA+ K+ K + G
Sbjct: 58 --------EGEGTESTVITGVDIVMNHHLQETSFTK--EAYKKYIKDYMKSIKGKLEEQR 107
Query: 257 PVAQLGPFVMNTQEEIDQTIDDFENY 282
P ++ PF+ E+I + +F+NY
Sbjct: 108 P-ERVKPFMTGAAEQIKHILANFKNY 132
>pdb|1YZ1|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
Length = 174
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 20/146 (13%)
Query: 140 YQEVSSKDIAEAAKDGIKVRVIA-GEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRS 198
Y+++ S D E D K+R IA G L V+ + +RT D + A P
Sbjct: 6 YRDLISHD--EMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGP---- 59
Query: 199 WNAFVYVLEGEGLFGTVKS--SPVSAHHXXXXXXXXXXEAWNKFSKPLRFVLVGGEPIGE 256
EGEG TV + V HH EA+ K+ K + G
Sbjct: 60 --------EGEGTESTVITGVDIVMNHHLQETSFTK--EAYKKYIKDYMKSIKGKLEEQR 109
Query: 257 PVAQLGPFVMNTQEEIDQTIDDFENY 282
P ++ PF+ E+I + +F+NY
Sbjct: 110 P-ERVKPFMTGAAEQIKHILANFKNY 134
>pdb|3LEW|A Chain A, Crystal Structure Of Susd-Like Carbohydrate Binding
Protein (Yp_001298396.1) From Bacteroides Vulgatus Atcc
8482 At 1.70 A Resolution
Length = 495
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 26/124 (20%)
Query: 70 GFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGI-----VHSEMPAAQGTQKGLQ 124
G + V G TH +F G G L W+ A R I V + AA+GTQ
Sbjct: 56 GSDVVLNSKYGFRTHNEFSAIYGKGGTNTLSWLLAYRVINDCNGVLDNIDAAEGTQADRN 115
Query: 125 ------------LWINLSSKYK---------MIEPRYQEVSSKDIAEAAKDGIKVRVIAG 163
L+++L+S Y + P Y + + + IA K V +
Sbjct: 116 RIKGQALALRGFLYLHLASCYSFAIDKDPDAVCAPIYTQSTDETIAAEGKPASSVSEVYA 175
Query: 164 EALG 167
+++
Sbjct: 176 QSIN 179
>pdb|4FAG|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant In
Complex With Gentisate
pdb|4FBF|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant
Length = 367
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 176 TPTMYLDFTLKPGAHLRQPILR-SWNAFVYVLEGEGLFGTVKSSPV 220
+PTMY G P R S NAF +V+EGEG++ V PV
Sbjct: 100 SPTMYAGIQYL-GPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPV 144
>pdb|3NST|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans
pdb|3NVC|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Salicylate
pdb|3NW4|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Gentisate
Length = 368
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 198 SWNAFVYVLEGEGLFGTVKSSPV 220
S NAF +V+EGEG++ V PV
Sbjct: 122 SQNAFRFVVEGEGVWTVVNGDPV 144
>pdb|4FAH|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans A85h Mutant
Length = 367
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 198 SWNAFVYVLEGEGLFGTVKSSPV 220
S NAF +V+EGEG++ V PV
Sbjct: 122 SQNAFRFVVEGEGVWTVVNGDPV 144
>pdb|3BBO|N Chain N, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 257
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 79 QGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEP 138
QGA G K GPG ++ G+ ++ +P +G G+ + P
Sbjct: 91 QGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGL----------P 140
Query: 139 RYQEVSSKDIAEAA-KDGIKV 158
+Y V+ DI A +DG +V
Sbjct: 141 KYVNVNLTDIENAGFQDGEEV 161
>pdb|2PHD|A Chain A, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|B Chain B, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|C Chain C, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|D Chain D, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|3NJZ|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Salicylate
pdb|3NKT|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Naphthoate
pdb|3NL1|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Gentisate
Length = 368
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 198 SWNAFVYVLEGEGLFGTVKSSPV 220
S NAF +V+EGEG++ V PV
Sbjct: 122 SQNAFRFVVEGEGVWTVVNGDPV 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,712,026
Number of Sequences: 62578
Number of extensions: 422284
Number of successful extensions: 936
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 19
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)