Query 039926
Match_columns 302
No_of_seqs 186 out of 1465
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1741 Pirin-related protein 100.0 3.5E-72 7.7E-77 516.4 27.2 268 11-285 1-276 (276)
2 PF02678 Pirin: Pirin; InterP 100.0 1.2E-35 2.6E-40 238.4 8.0 97 31-127 1-107 (107)
3 PF05726 Pirin_C: Pirin C-term 100.0 2.5E-31 5.4E-36 212.7 12.1 104 180-285 1-104 (104)
4 PRK11171 hypothetical protein; 98.9 5.2E-07 1.1E-11 83.7 24.1 182 56-249 67-256 (266)
5 TIGR03404 bicupin_oxalic bicup 98.6 7.5E-06 1.6E-10 79.4 21.2 193 56-258 73-331 (367)
6 TIGR03214 ura-cupin putative a 98.6 1.5E-05 3.2E-10 73.8 21.5 181 56-249 64-251 (260)
7 PF07883 Cupin_2: Cupin domain 97.3 0.00027 5.9E-09 51.2 3.9 68 56-126 4-71 (71)
8 PRK13290 ectC L-ectoine syntha 97.3 0.0039 8.5E-08 51.5 10.8 74 177-253 34-110 (125)
9 PF07883 Cupin_2: Cupin domain 97.2 0.0025 5.5E-08 46.0 7.8 67 183-249 3-70 (71)
10 TIGR03214 ura-cupin putative a 97.2 0.0038 8.1E-08 57.8 10.5 87 30-123 163-249 (260)
11 smart00835 Cupin_1 Cupin. This 96.8 0.049 1.1E-06 45.6 13.4 101 153-257 9-116 (146)
12 PRK11171 hypothetical protein; 96.5 0.02 4.3E-07 53.2 10.2 91 26-122 162-253 (266)
13 PRK09943 DNA-binding transcrip 96.3 0.045 9.7E-07 47.7 10.4 74 178-252 107-182 (185)
14 TIGR02451 anti_sig_ChrR anti-s 96.1 0.0071 1.5E-07 54.5 4.7 63 56-126 133-195 (215)
15 PRK13290 ectC L-ectoine syntha 96.0 0.054 1.2E-06 44.7 8.8 72 52-130 37-109 (125)
16 COG1917 Uncharacterized conser 95.9 0.057 1.2E-06 44.2 8.7 75 50-127 43-117 (131)
17 COG3257 GlxB Uncharacterized p 95.9 0.75 1.6E-05 41.5 15.9 150 65-229 77-234 (264)
18 PF12973 Cupin_7: ChrR Cupin-l 95.6 0.15 3.3E-06 39.2 9.5 67 179-251 25-91 (91)
19 COG4101 Predicted mannose-6-ph 95.5 0.033 7.1E-07 45.5 5.3 66 56-123 52-119 (142)
20 PF12973 Cupin_7: ChrR Cupin-l 95.3 0.0059 1.3E-07 47.2 0.5 74 29-114 7-80 (91)
21 TIGR03404 bicupin_oxalic bicup 95.3 0.13 2.9E-06 49.9 10.0 75 50-126 245-323 (367)
22 smart00835 Cupin_1 Cupin. This 94.9 0.14 3.1E-06 42.8 8.0 74 50-127 30-108 (146)
23 PF00190 Cupin_1: Cupin; Inte 94.5 1.1 2.4E-05 37.2 12.5 91 150-245 9-113 (144)
24 PRK10371 DNA-binding transcrip 93.8 0.15 3.2E-06 48.0 6.4 68 42-113 12-85 (302)
25 TIGR01479 GMP_PMI mannose-1-ph 93.5 0.39 8.5E-06 48.1 9.1 77 176-253 374-452 (468)
26 COG3257 GlxB Uncharacterized p 93.4 0.41 8.8E-06 43.2 7.9 68 182-250 65-135 (264)
27 COG1917 Uncharacterized conser 93.2 0.65 1.4E-05 37.9 8.5 63 177-239 42-105 (131)
28 PF11699 CENP-C_C: Mif2/CENP-C 93.1 0.82 1.8E-05 35.2 8.2 67 183-249 17-84 (85)
29 COG0662 {ManC} Mannose-6-phosp 93.1 0.93 2E-05 37.1 9.2 77 177-253 35-112 (127)
30 COG3837 Uncharacterized conser 93.0 0.44 9.5E-06 40.8 7.2 74 52-126 44-118 (161)
31 PF05899 Cupin_3: Protein of u 93.0 0.23 5E-06 36.9 5.0 49 63-113 19-68 (74)
32 TIGR01479 GMP_PMI mannose-1-ph 93.0 0.73 1.6E-05 46.2 10.1 74 51-131 377-452 (468)
33 PRK15460 cpsB mannose-1-phosph 92.6 0.59 1.3E-05 47.1 8.8 76 174-250 381-458 (478)
34 PF01050 MannoseP_isomer: Mann 92.2 1 2.2E-05 38.4 8.5 69 178-247 63-133 (151)
35 PRK09943 DNA-binding transcrip 92.1 1.7 3.7E-05 37.7 10.2 68 57-130 114-182 (185)
36 COG0662 {ManC} Mannose-6-phosp 91.4 3.4 7.3E-05 33.8 10.6 73 52-127 38-110 (127)
37 PF02311 AraC_binding: AraC-li 90.6 0.83 1.8E-05 36.0 6.1 64 61-130 14-77 (136)
38 TIGR02451 anti_sig_ChrR anti-s 90.5 1.1 2.4E-05 40.3 7.5 73 178-254 127-199 (215)
39 PF04962 KduI: KduI/IolB famil 89.5 0.72 1.6E-05 42.8 5.5 69 183-254 32-110 (261)
40 TIGR02272 gentisate_1_2 gentis 88.4 13 0.00028 35.9 13.3 60 57-119 88-147 (335)
41 PF14499 DUF4437: Domain of un 88.0 9.2 0.0002 35.4 11.6 75 30-113 20-96 (251)
42 PF06249 EutQ: Ethanolamine ut 88.0 2.5 5.4E-05 36.1 7.4 67 178-250 77-145 (152)
43 PF05962 HutD: HutD; InterPro 87.9 0.75 1.6E-05 40.4 4.3 51 196-250 132-183 (184)
44 COG4101 Predicted mannose-6-ph 87.6 4 8.7E-05 33.5 7.9 79 176-255 44-127 (142)
45 COG3837 Uncharacterized conser 87.5 2.8 6.2E-05 35.9 7.3 95 158-261 29-128 (161)
46 PRK10296 DNA-binding transcrip 87.2 2.7 5.8E-05 38.5 7.8 61 62-127 35-95 (278)
47 COG4766 EutQ Ethanolamine util 87.0 1.7 3.7E-05 37.1 5.7 49 199-250 118-168 (176)
48 PRK04190 glucose-6-phosphate i 86.7 4.5 9.7E-05 35.8 8.5 87 50-144 68-166 (191)
49 PF05899 Cupin_3: Protein of u 83.7 2.7 5.9E-05 31.1 4.9 52 184-238 13-66 (74)
50 COG3450 Predicted enzyme of th 83.1 2.6 5.7E-05 34.4 4.9 46 62-109 56-102 (116)
51 PRK15460 cpsB mannose-1-phosph 82.6 10 0.00022 38.3 10.0 75 52-131 387-461 (478)
52 PF11142 DUF2917: Protein of u 81.5 13 0.00029 26.8 7.7 54 183-238 2-58 (63)
53 PF00190 Cupin_1: Cupin; Inte 80.1 4.5 9.8E-05 33.5 5.6 68 56-126 40-118 (144)
54 PRK15457 ethanolamine utilizat 79.6 12 0.00025 34.2 8.3 56 189-249 167-224 (233)
55 PF06249 EutQ: Ethanolamine ut 78.2 4 8.6E-05 34.9 4.6 42 70-112 94-135 (152)
56 PF06339 Ectoine_synth: Ectoin 78.1 32 0.0007 28.4 9.7 74 178-254 35-111 (126)
57 PF01050 MannoseP_isomer: Mann 75.9 16 0.00034 31.1 7.7 72 53-127 66-137 (151)
58 PLN02288 mannose-6-phosphate i 75.3 30 0.00066 34.1 10.6 55 177-232 333-390 (394)
59 PRK13501 transcriptional activ 75.2 3.9 8.5E-05 37.7 4.2 60 62-127 30-89 (290)
60 PF14326 DUF4384: Domain of un 74.3 21 0.00046 26.7 7.4 55 185-239 3-66 (83)
61 PF02311 AraC_binding: AraC-li 73.9 9.6 0.00021 29.7 5.7 50 199-249 23-74 (136)
62 TIGR03037 anthran_nbaC 3-hydro 73.6 8.2 0.00018 33.3 5.4 80 200-282 49-148 (159)
63 TIGR02297 HpaA 4-hydroxyphenyl 73.0 20 0.00044 32.6 8.4 50 61-114 34-84 (287)
64 PRK15131 mannose-6-phosphate i 72.6 88 0.0019 30.7 13.1 57 178-237 321-379 (389)
65 PF05775 AfaD: Enterobacteria 71.8 52 0.0011 26.7 9.4 80 118-210 23-110 (111)
66 PLN00212 glutelin; Provisional 71.6 45 0.00098 33.9 11.0 76 175-251 345-427 (493)
67 COG2140 Thermophilic glucose-6 71.0 27 0.00059 31.4 8.3 67 58-126 88-160 (209)
68 PRK13500 transcriptional activ 70.6 7.4 0.00016 36.5 5.0 50 61-114 59-108 (312)
69 COG3435 Gentisate 1,2-dioxygen 68.9 89 0.0019 29.9 11.4 190 58-256 100-338 (351)
70 PRK15457 ethanolamine utilizat 68.2 57 0.0012 29.9 9.8 41 67-108 171-211 (233)
71 PF14525 AraC_binding_2: AraC- 67.4 41 0.0009 27.5 8.4 43 197-239 53-96 (172)
72 TIGR03037 anthran_nbaC 3-hydro 65.8 29 0.00063 29.9 7.1 51 58-112 36-90 (159)
73 PRK13503 transcriptional activ 61.5 12 0.00025 34.0 4.3 48 61-112 26-73 (278)
74 COG3806 ChrR Transcriptional a 61.1 27 0.00059 31.2 6.2 75 25-112 108-182 (216)
75 COG3718 IolB Uncharacterized e 59.5 60 0.0013 29.9 8.2 68 183-253 34-112 (270)
76 PF13464 DUF4115: Domain of un 59.0 40 0.00087 24.8 6.1 53 199-256 7-61 (77)
77 COG1482 ManA Phosphomannose is 58.6 1.5E+02 0.0033 28.3 11.3 40 199-238 260-301 (312)
78 PRK13502 transcriptional activ 56.3 22 0.00047 32.4 5.1 49 62-114 30-78 (282)
79 PRK04190 glucose-6-phosphate i 55.7 1.5E+02 0.0032 26.2 10.6 76 176-251 66-155 (191)
80 PF06339 Ectoine_synth: Ectoin 53.4 22 0.00047 29.5 4.0 88 29-126 18-107 (126)
81 PHA02984 hypothetical protein; 52.9 51 0.0011 30.8 6.7 84 194-279 88-176 (286)
82 PRK13264 3-hydroxyanthranilate 52.4 30 0.00065 30.4 5.0 80 200-282 55-154 (177)
83 PRK13264 3-hydroxyanthranilate 49.6 43 0.00092 29.4 5.5 51 58-112 42-96 (177)
84 PRK00924 5-keto-4-deoxyuronate 49.3 1.2E+02 0.0025 28.6 8.7 57 197-254 72-132 (276)
85 COG3450 Predicted enzyme of th 49.0 27 0.00058 28.5 3.9 33 199-231 63-97 (116)
86 PF12852 Cupin_6: Cupin 47.7 64 0.0014 27.6 6.4 52 186-237 21-76 (186)
87 PF05523 FdtA: WxcM-like, C-te 47.6 1.4E+02 0.003 24.5 8.1 71 185-256 40-116 (131)
88 PLN00212 glutelin; Provisional 46.9 88 0.0019 31.8 8.0 55 57-113 355-414 (493)
89 PRK11396 hypothetical protein; 42.9 52 0.0011 29.2 5.1 51 195-250 128-178 (191)
90 KOG2757 Mannose-6-phosphate is 42.4 1.5E+02 0.0032 29.1 8.3 147 44-239 240-395 (411)
91 PF15220 HILPDA: Hypoxia-induc 38.1 22 0.00048 25.1 1.6 15 57-71 49-63 (63)
92 PF05225 HTH_psq: helix-turn-h 37.0 33 0.00072 22.9 2.3 20 268-287 1-20 (45)
93 COG4766 EutQ Ethanolamine util 34.4 95 0.0021 26.7 5.1 42 70-112 117-158 (176)
94 COG2140 Thermophilic glucose-6 34.0 3.3E+02 0.0071 24.6 8.7 71 183-254 85-164 (209)
95 PF05726 Pirin_C: Pirin C-term 33.0 28 0.0006 27.3 1.7 50 57-109 6-55 (104)
96 PF14499 DUF4437: Domain of un 32.7 3.5E+02 0.0076 25.0 9.0 72 155-239 21-97 (251)
97 PF05995 CDO_I: Cysteine dioxy 29.0 2.9E+02 0.0063 23.7 7.5 70 57-127 82-163 (175)
98 PRK14113 urease accessory prot 28.2 2.3E+02 0.005 24.1 6.5 32 218-252 49-80 (152)
99 PF04209 HgmA: homogentisate 1 28.1 2.8E+02 0.0061 27.7 8.0 66 196-265 143-211 (424)
100 PHA02283 hypothetical protein 27.2 3.2E+02 0.0069 24.1 7.2 79 197-288 46-125 (210)
101 COG3717 KduI 5-keto 4-deoxyuro 26.0 1.3E+02 0.0029 27.7 4.9 48 207-255 86-135 (278)
102 PRK14112 urease accessory prot 25.5 3.2E+02 0.0069 23.2 6.9 32 218-252 55-86 (149)
103 PF03079 ARD: ARD/ARD' family; 25.5 3.1E+02 0.0068 23.4 7.0 63 63-128 85-151 (157)
104 TIGR00218 manA mannose-6-phosp 24.8 4.6E+02 0.0099 24.5 8.6 63 179-248 236-300 (302)
105 PF07847 DUF1637: Protein of u 24.6 36 0.00077 30.4 1.0 31 55-85 49-79 (200)
106 PLN02254 gibberellin 3-beta-di 24.2 1.2E+02 0.0025 29.5 4.5 19 61-79 225-243 (358)
107 COG5553 Predicted metal-depend 23.5 1.3E+02 0.0029 26.1 4.2 67 45-116 66-145 (191)
108 PRK13261 ureE urease accessory 23.5 3.7E+02 0.0081 22.7 7.1 32 218-252 54-85 (159)
109 PRK13263 ureE urease accessory 23.4 3.3E+02 0.0071 24.5 6.9 31 218-251 55-85 (206)
110 COG4297 Uncharacterized protei 23.4 3.1E+02 0.0066 23.3 6.2 71 203-281 68-143 (163)
111 PF04831 Popeye: Popeye protei 22.5 3.7E+02 0.0081 23.0 6.7 69 184-254 32-112 (153)
112 PF04151 PPC: Bacterial pre-pe 22.4 1.9E+02 0.0042 20.4 4.4 32 178-209 2-34 (70)
113 PRK10296 DNA-binding transcrip 22.3 2E+02 0.0044 25.9 5.6 34 200-234 44-79 (278)
114 COG3822 ABC-type sugar transpo 21.9 2.2E+02 0.0047 25.5 5.3 30 182-213 154-183 (225)
115 TIGR02297 HpaA 4-hydroxyphenyl 21.7 1.7E+02 0.0037 26.4 5.0 38 200-238 45-84 (287)
116 PRK13502 transcriptional activ 21.5 2.4E+02 0.0053 25.4 6.0 39 199-238 38-78 (282)
117 PRK11507 ribosome-associated p 21.1 69 0.0015 23.8 1.8 32 198-229 27-62 (70)
118 PF07944 DUF1680: Putative gly 20.1 3.9E+02 0.0083 27.1 7.5 53 210-266 457-519 (520)
No 1
>COG1741 Pirin-related protein [General function prediction only]
Probab=100.00 E-value=3.5e-72 Score=516.38 Aligned_cols=268 Identities=40% Similarity=0.698 Sum_probs=235.3
Q ss_pred eeccceeeEEeeCCCcCCCCceEEEeecCCCcccCC-CCeEEeeccc---cCCCCCCCCCCCCCceEEEEEceeeEEeec
Q 039926 11 VKEPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYF-DPFLVLDEFS---VTAPAGFPDHPHRGFETVTYMLQGAVTHED 86 (302)
Q Consensus 11 ~~~~r~i~~~~~~~~~~~G~g~~v~r~~~~~~~~~~-~Pf~~ld~~~---~~~~~gf~~HPHrg~EivTyvl~G~l~H~D 86 (302)
|+..|.+.+......+.+|.|....|.++......+ +||++||++. +.|+.+|++|||||||||||||+|+++|+|
T Consensus 1 m~~~r~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~~pF~~ld~~~~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrD 80 (276)
T COG1741 1 MITIRTAIERGIGHATGDWLGVRLTRSFGPYYDPALVGPFLFLDVIGPDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRD 80 (276)
T ss_pred CccchhHHHhCcccccCCCCCeeEEEEecCCcCccccCCccceeecccccccCCCcCCCCCCCCcEEEEEEEccEEEEee
Confidence 344566666665666777655555566655444455 9999999988 567778999999999999999999999999
Q ss_pred CCCCeeeeCCCceEEEeCCCCeEEEeeeC--CCCceeEEEEEeecccccCCCCCceeeec-CcccceeecCCeEEEEEec
Q 039926 87 FEGHKGTIGPGDLQWMTAGRGIVHSEMPA--AQGTQKGLQLWINLSSKYKMIEPRYQEVS-SKDIAEAAKDGIKVRVIAG 163 (302)
Q Consensus 87 S~Gn~~~i~~G~vQwmtAGsGI~HsE~~~--~~~~~~~lQiWinlP~~~k~~~P~y~~~~-~~~ip~~~~~g~~~rviaG 163 (302)
|+||+++|+||||||||||+||+|||+|. .+.++++||||||||++.|+.+|+||++. ++++|.... |.++||++|
T Consensus 81 S~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP~~~k~~~P~yq~~~~~~~~p~~~~-g~~~rvi~G 159 (276)
T COG1741 81 SLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLPAADKMIAPRYQHLAFPDEIPRVEL-GLTARVIAG 159 (276)
T ss_pred cCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCchhhccCCcccccccCcccCceeec-ceEEEEecc
Confidence 99999999999999999999999999997 47789999999999999999999999999 889998877 899999999
Q ss_pred CCCCCcCCccccCCcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEcCCCCce-ecCCceEEEcCCCeEEEEecCCC
Q 039926 164 EALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSP-VSAHHLLLLGSGDGLEAWNKFSK 242 (302)
Q Consensus 164 ~~~g~~sp~~~~~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~~~~~-l~~~d~~~l~~~~~l~l~a~~~~ 242 (302)
++++..+|+...+ +.++|+.|++|+++.++ |+++++||||++|.++|+| .. +....++++ +++.+++++.+..
T Consensus 160 ~~~g~~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~g---~~~~~~~~l~i~-~g~~i~l~a~~~~ 233 (276)
T COG1741 160 RDGGLSSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVNG---QHETDGDGLAIL-DGDEITLVADSPA 233 (276)
T ss_pred ccCCcccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEcc---cccccccceEEe-cCCeEEEEecCCC
Confidence 9988899999999 99999999999999999 9999999999999999998 55 444444555 4888888886556
Q ss_pred CeEEEEecccccCCceeecCCCccCCHHHHHHHHHHHhcccCC
Q 039926 243 PLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNG 285 (302)
Q Consensus 243 ~a~~ll~~g~P~~epi~~~GpfVm~t~~ei~~A~~dy~~g~~g 285 (302)
+|++|||+|+|++||++.||||||||+|||+||++|||+|+|.
T Consensus 234 ~a~vLL~~g~P~~~~~~~~g~fV~~s~e~i~~a~~~~~~g~f~ 276 (276)
T COG1741 234 GARVLLLDGPPLGEPIVIYGPFVMNSKEEIEQAKRDWREGRFP 276 (276)
T ss_pred CeEEEEEcCCCCCCceeEECCcccCCHHHHHHHHHHHHcCCCC
Confidence 7999999999999999999999999999999999999999874
No 2
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=100.00 E-value=1.2e-35 Score=238.38 Aligned_cols=97 Identities=55% Similarity=0.907 Sum_probs=86.5
Q ss_pred ceEEEeecCC-CcccCCCCeEEeecccc---C--C---CCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEE
Q 039926 31 GAIVRRSIGR-FELRYFDPFLVLDEFSV---T--A---PAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQW 101 (302)
Q Consensus 31 g~~v~r~~~~-~~~~~~~Pf~~ld~~~~---~--~---~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQw 101 (302)
|++++|.+|. ..+..++||+++|++.. . + +.||++|||+|+||||||++|+++|+||+||+++|++|+|||
T Consensus 1 ~~~~~r~~~~~~~~~~~~pF~f~d~~~p~~~~~g~d~i~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~~~l~~G~vq~ 80 (107)
T PF02678_consen 1 GFRVRRVLPNHGWLQSRDPFSFLDYFDPANMAFGPDYIGAGFPMHPHRGFEIVTYVLEGELRHRDSLGNRGVLRAGDVQW 80 (107)
T ss_dssp -EEECCGTCSTCCGCCCCTEEEEEEEETCECSETTEEETTEEEEEEECSEEEEEEEEESEEEEEETTSEEEEEETTEEEE
T ss_pred CeEEeecCCCCCcccccCccCcccccCccccCCCccccCCCCCCcCCCCceEEEEEecCEEEEECCCCCeeEeCCCeEEE
Confidence 6899999998 66788999999999763 2 2 579999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEeeeCCC-CceeEEEEEe
Q 039926 102 MTAGRGIVHSEMPAAQ-GTQKGLQLWI 127 (302)
Q Consensus 102 mtAGsGI~HsE~~~~~-~~~~~lQiWi 127 (302)
|+||+||+|+|+|.++ +++++|||||
T Consensus 81 m~AG~Gi~H~E~~~~~~~~~~~lQlWi 107 (107)
T PF02678_consen 81 MTAGSGIVHSERNASDGGPLHGLQLWI 107 (107)
T ss_dssp EE-TTTEEEEEEE-TSSS-EEEEEEEE
T ss_pred EeCCCCceEEEecCCCCCeEEEEEEcC
Confidence 9999999999999875 8999999997
No 3
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=99.97 E-value=2.5e-31 Score=212.73 Aligned_cols=104 Identities=46% Similarity=0.803 Sum_probs=86.1
Q ss_pred EEEEEECCCCEEEeecCCCCeEEEEEEecceEEcCCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEecccccCCcee
Q 039926 180 YLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGEPVA 259 (302)
Q Consensus 180 ~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~P~~epi~ 259 (302)
|+|++|++|+++++++|+++++++||++|++.+++.. ..+.+++++.+.+++.+++++.+ +++||||++|+||+|||+
T Consensus 1 y~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~~~~-~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~GePl~Epi~ 78 (104)
T PF05726_consen 1 YLDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVGGEE-DPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGGEPLNEPIV 78 (104)
T ss_dssp EEEEEE-TT-EEEEEEETT-EEEEEEEESEEEETTTT-EEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE----S--E
T ss_pred CEEEEECCCCEEEeecCCCCEEEEEEEECcEEECCCc-ceECCCcEEEECCCceEEEEECC-CCcEEEEEEccCCCCCEE
Confidence 6899999999999999999999999999999999821 25999999999988899999963 799999999999999999
Q ss_pred ecCCCccCCHHHHHHHHHHHhcccCC
Q 039926 260 QLGPFVMNTQEEIDQTIDDFENYVNG 285 (302)
Q Consensus 260 ~~GpfVm~t~~ei~~A~~dy~~g~~g 285 (302)
+||||||||++||+||++|||+|+||
T Consensus 79 ~~GpFVmnt~eeI~qA~~dy~~g~fg 104 (104)
T PF05726_consen 79 QYGPFVMNTREEIEQAFEDYQNGKFG 104 (104)
T ss_dssp EETTEEESSHHHHHHHHHHHHCT-T-
T ss_pred EECCcccCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999997
No 4
>PRK11171 hypothetical protein; Provisional
Probab=98.95 E-value=5.2e-07 Score=83.70 Aligned_cols=182 Identities=19% Similarity=0.233 Sum_probs=124.1
Q ss_pred ccCCCCCCCCCCCC-CceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEeeccc--c
Q 039926 56 SVTAPAGFPDHPHR-GFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSS--K 132 (302)
Q Consensus 56 ~~~~~~gf~~HPHr-g~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWinlP~--~ 132 (302)
.+.|+.....|.|. +.|-+-||++|+++-.- -|..-.|.+||.-.+.++ ..|+=.|.+++++++ ||+.-|= .
T Consensus 67 ~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~-~g~~~~L~~GDsi~~p~~--~~H~~~N~g~~~a~~--l~v~~~y~~~ 141 (266)
T PRK11171 67 EVEPGGGSDQPEPDEGAETFLFVVEGEITLTL-EGKTHALSEGGYAYLPPG--SDWTLRNAGAEDARF--HWIRKRYEPV 141 (266)
T ss_pred EECCCCcCCCCCCCCCceEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCC--CCEEEEECCCCCEEE--EEEEcCCeEc
Confidence 45666666666665 88999999999998874 355679999999999988 568888877777776 6664221 1
Q ss_pred cCCCCCceeeecCcccceee---cCCeEEEE-EecCCCCCcCCccccCCcEEEEEEECCCCEEEeecCCCCeEEEEEEec
Q 039926 133 YKMIEPRYQEVSSKDIAEAA---KDGIKVRV-IAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEG 208 (302)
Q Consensus 133 ~k~~~P~y~~~~~~~ip~~~---~~g~~~rv-iaG~~~g~~sp~~~~~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G 208 (302)
....+|.-.--...+++... ..|..++. +.+. -...-+..+..+.|++|+++.+.-..+..-.+||++|
T Consensus 142 ~~~~~p~~~~~~~~d~~~~~~~g~~g~~~~~~~~~p-------~~~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G 214 (266)
T PRK11171 142 EGHEAPEAFVGNESDIEPIPMPGTDGVWATTRLVDP-------EDLRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEG 214 (266)
T ss_pred CCCCCCCeEecchhcccccccCCCCCeEEEEEeeCc-------hhcCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeC
Confidence 12234532222223343332 23444443 3332 1223346788899999999887545667789999999
Q ss_pred ceEEcC-CCCceecCCceEEEcCCCeEEEEecCCCCeEEEEe
Q 039926 209 EGLFGT-VKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLV 249 (302)
Q Consensus 209 ~v~i~~-~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~ 249 (302)
++++.- .+...|++||.+.+.....-.+.+.+++.+++|++
T Consensus 215 ~~~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 215 KGVYRLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred EEEEEECCEEEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 998742 23378999999999877777788776778888876
No 5
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.62 E-value=7.5e-06 Score=79.35 Aligned_cols=193 Identities=19% Similarity=0.188 Sum_probs=117.1
Q ss_pred ccCCCCCCCCCCCCCceEEEEEceeeEEe--ecCCCCee--eeCCCceEEEeCCCCeEEEeeeCCCCceeEEEE------
Q 039926 56 SVTAPAGFPDHPHRGFETVTYMLQGAVTH--EDFEGHKG--TIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQL------ 125 (302)
Q Consensus 56 ~~~~~~gf~~HPHrg~EivTyvl~G~l~H--~DS~Gn~~--~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQi------ 125 (302)
.+.++...++|.|++.| +.||++|+++- .|+.|..- .|++||+-.+.+| +.|+-.+.. +.++++=+
T Consensus 73 ~l~pG~~~~~HwH~~~E-~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g--~~H~~~n~~-~~~~~l~vf~~~~f 148 (367)
T TIGR03404 73 RLEPGAIRELHWHKEAE-WAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPG--IPHSLQGLD-EGCEFLLVFDDGNF 148 (367)
T ss_pred EEcCCCCCCcccCCCce-EEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCC--CeEEEEECC-CCeEEEEEeCCccc
Confidence 56777778999999999 79999999864 44445543 4999999999866 678877653 33332211
Q ss_pred ----------Eee-cccc------------cCC--CCCceee-------------------------ecCcccceeecCC
Q 039926 126 ----------WIN-LSSK------------YKM--IEPRYQE-------------------------VSSKDIAEAAKDG 155 (302)
Q Consensus 126 ----------Win-lP~~------------~k~--~~P~y~~-------------------------~~~~~ip~~~~~g 155 (302)
|+. +|.+ -+. .+-.|.. +..++.+.....|
T Consensus 149 ~~~~~~~~~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 228 (367)
T TIGR03404 149 SEDGTFLVTDWLAHTPKDVLAKNFGVPESAFDNLPLKELYIFPGTVPGPLDQEAVTGPAGEVPGPFTYHLSEQKPKQVPG 228 (367)
T ss_pred CCcceeeHHHHHHhCCHHHHHHHhCCCHHHHHhccccCceEEecCCCCccccccCcCCCCCCCccEEEEhhhCCceecCC
Confidence 111 1110 000 0001110 0001111111233
Q ss_pred eEEEEEecCCCCCcCCccccCCcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEc--CC----CCceecCCceEEEc
Q 039926 156 IKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFG--TV----KSSPVSAHHLLLLG 229 (302)
Q Consensus 156 ~~~rviaG~~~g~~sp~~~~~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~--~~----~~~~l~~~d~~~l~ 229 (302)
+.+|++... +-| ....+.+..+.|++|+....-......-+.||++|++++. +. ....+.+||++.+.
T Consensus 229 G~~~~~~~~----~~p--~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP 302 (367)
T TIGR03404 229 GTVRIADST----NFP--VSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVP 302 (367)
T ss_pred ceEEEEChh----hcc--CcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEEC
Confidence 444443221 112 2234667788999999766444444557999999999774 11 12479999999998
Q ss_pred CCCeEEEEecCCCCeEEEEecccccCCce
Q 039926 230 SGDGLEAWNKFSKPLRFVLVGGEPIGEPV 258 (302)
Q Consensus 230 ~~~~l~l~a~~~~~a~~ll~~g~P~~epi 258 (302)
.+..=.+++.++++++||.+--.|-.+-|
T Consensus 303 ~g~~H~i~N~G~e~l~fL~if~s~~~~~i 331 (367)
T TIGR03404 303 RNMGHYVENTGDETLVFLEVFKADRFADV 331 (367)
T ss_pred CCCeEEEEECCCCCEEEEEEECCCCCcee
Confidence 88777788776788999998766665554
No 6
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.59 E-value=1.5e-05 Score=73.81 Aligned_cols=181 Identities=18% Similarity=0.228 Sum_probs=116.3
Q ss_pred ccCCCCCC-CCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEeecccc-c
Q 039926 56 SVTAPAGF-PDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSK-Y 133 (302)
Q Consensus 56 ~~~~~~gf-~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWinlP~~-~ 133 (302)
.+.|+.+. ..|+|.|.|.+-||++|+++=.. -|..-.|++||.-.+.||. .|+=.|.+++++++ +|+.-+-+ .
T Consensus 64 ~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~-~g~~~~L~~Gd~~y~pa~~--~H~~~N~~~~~a~~--l~v~k~y~~~ 138 (260)
T TIGR03214 64 EVHPGGGNTTGFGGEGIETFLFVISGEVNVTA-EGETHELREGGYAYLPPGS--KWTLANAQAEDARF--FLYKKRYQPV 138 (260)
T ss_pred EECCCCcCCCCCCCCceEEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCC--CEEEEECCCCCEEE--EEEEeeeEEc
Confidence 35555443 35678999999999999996652 2455699999999999996 57777877777766 67752211 1
Q ss_pred CC-CCCceeeecCcccceee---cCCeEEEEEecCCCCCcCCccccCCcEEEEEEECCCCEEEeecCCCCeEEEEEEecc
Q 039926 134 KM-IEPRYQEVSSKDIAEAA---KDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGE 209 (302)
Q Consensus 134 k~-~~P~y~~~~~~~ip~~~---~~g~~~rviaG~~~g~~sp~~~~~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~ 209 (302)
++ .+|.-.--..++++... .++..+|.+. +. ...-+..+..+++++|++.-+.......--+|+++|+
T Consensus 139 ~g~~~~~~vvg~~~dv~~~~~~g~~~~~~~~ll-p~-------~~~~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~ 210 (260)
T TIGR03214 139 EGLHAPELVVGNEKDIEPEPYEGMDDVILTTLL-PK-------ELAFDMNVHILSFEPGASHPYIETHVMEHGLYVLEGK 210 (260)
T ss_pred CCCCCCCeeecCHHHCCccccCCCCcEEEEEeC-ch-------hcCCCcEEEEEEECCCcccCCcccccceeEEEEEece
Confidence 22 23322111123344332 3356676665 31 1122556666899999987433333344567999999
Q ss_pred eEEcC-CCCceecCCceEEEcCCCeEEEEecCCCCeEEEEe
Q 039926 210 GLFGT-VKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLV 249 (302)
Q Consensus 210 v~i~~-~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~ 249 (302)
..+.. .+...+++||.+.+..+..=.+.+.++++.++||.
T Consensus 211 G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y 251 (260)
T TIGR03214 211 GVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY 251 (260)
T ss_pred EEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence 87642 13378999999999866555677776778888874
No 7
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=97.31 E-value=0.00027 Score=51.19 Aligned_cols=68 Identities=22% Similarity=0.450 Sum_probs=57.4
Q ss_pred ccCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEE
Q 039926 56 SVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLW 126 (302)
Q Consensus 56 ~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiW 126 (302)
.+.|+...++|.|.+.+.+.||++|+++-. --|..-.+++||+-++.+| ..|.=.|.+++++.+|-||
T Consensus 4 ~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~~~~~l~~Gd~~~i~~~--~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 4 TLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDGERVELKPGDAIYIPPG--VPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEETTEEEEEEEESSEEEEEEEEESEEEEE-ETTEEEEEETTEEEEEETT--SEEEEEEESSSEEEEEEEE
T ss_pred EECCCCCCCCEECCCCCEEEEEEECCEEEE-EccEEeEccCCEEEEECCC--CeEEEEECCCCCEEEEEEC
Confidence 345666778999999989999999999998 4466789999999999988 7888888888888887665
No 8
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=97.27 E-value=0.0039 Score=51.47 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=55.7
Q ss_pred CcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEc---CCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEecccc
Q 039926 177 PTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFG---TVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEP 253 (302)
Q Consensus 177 ~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~---~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~P 253 (302)
.+.++.+.|++|++........ .-++||++|++++. +.....|.+||.+.+..+..=.+.+. +++++|.+...|
T Consensus 34 ~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~tP~ 110 (125)
T PRK13290 34 GFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATGEVHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVFNPP 110 (125)
T ss_pred CEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEECCC
Confidence 4567778999998665433222 36999999999874 23447899999999998777777874 689998887755
No 9
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=97.17 E-value=0.0025 Score=45.99 Aligned_cols=67 Identities=25% Similarity=0.394 Sum_probs=50.7
Q ss_pred EEECCCCEEEeecCCCCeEEEEEEecceEEc-CCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEe
Q 039926 183 FTLKPGAHLRQPILRSWNAFVYVLEGEGLFG-TVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLV 249 (302)
Q Consensus 183 i~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~-~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~ 249 (302)
+.+++|++......+....++||++|++++. +.+...+++||.+.+..+..-.+.+.+++++++|.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 5778888766555444448999999999885 212378999999999988877777776677777765
No 10
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=97.16 E-value=0.0038 Score=57.82 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=68.2
Q ss_pred CceEEEeecCCCcccCCCCeEEeeccccCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeE
Q 039926 30 MGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIV 109 (302)
Q Consensus 30 ~g~~v~r~~~~~~~~~~~Pf~~ld~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~ 109 (302)
++..++.++ +. .+.+=..+.-+.+.|++-.+.|.|..+|=.-|||+|+-..+|. |....+++||+-||.|+ +.
T Consensus 163 ~~~~~~~ll--p~--~~~~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~-g~~~~V~~GD~i~i~~~--~~ 235 (260)
T TIGR03214 163 DDVILTTLL--PK--ELAFDMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLD-NNWVPVEAGDYIWMGAY--CP 235 (260)
T ss_pred CcEEEEEeC--ch--hcCCCcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEEC-CEEEEecCCCEEEECCC--CC
Confidence 567787888 22 1222355666888999888987777787778999999999886 77789999999999876 78
Q ss_pred EEeeeCCCCceeEE
Q 039926 110 HSEMPAAQGTQKGL 123 (302)
Q Consensus 110 HsE~~~~~~~~~~l 123 (302)
|.=.|..++++++|
T Consensus 236 h~~~~~G~~~~~~l 249 (260)
T TIGR03214 236 QACYAGGRGEFRYL 249 (260)
T ss_pred EEEEecCCCcEEEE
Confidence 88888777777764
No 11
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=96.79 E-value=0.049 Score=45.65 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=66.8
Q ss_pred cCCeEEEEEecCCCCCcCCccccCCcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEc--CCC-----CceecCCce
Q 039926 153 KDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFG--TVK-----SSPVSAHHL 225 (302)
Q Consensus 153 ~~g~~~rviaG~~~g~~sp~~~~~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~--~~~-----~~~l~~~d~ 225 (302)
.+++.++++.+. +-|.-....+.+..+++++|+........+..-++||++|++++. +.+ ...+++||.
T Consensus 9 ~~~g~~~~~~~~----~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~ 84 (146)
T smart00835 9 NEGGRLREADPT----NFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDV 84 (146)
T ss_pred CCCceEEEeCch----hCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCE
Confidence 445667777542 224323345788888999999765333333457899999998873 321 367999999
Q ss_pred EEEcCCCeEEEEecCCCCeEEEEecccccCCc
Q 039926 226 LLLGSGDGLEAWNKFSKPLRFVLVGGEPIGEP 257 (302)
Q Consensus 226 ~~l~~~~~l~l~a~~~~~a~~ll~~g~P~~ep 257 (302)
+.+..+..-.+.+.++++++++.+...-...|
T Consensus 85 ~~ip~g~~H~~~n~~~~~~~~l~~~~~~~~~~ 116 (146)
T smart00835 85 FVVPQGHPHFQVNSGDENLEFVAFNTNDPNRR 116 (146)
T ss_pred EEECCCCEEEEEcCCCCCEEEEEEecCCCCce
Confidence 99987766566666567888887755443333
No 12
>PRK11171 hypothetical protein; Provisional
Probab=96.55 E-value=0.02 Score=53.16 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=67.6
Q ss_pred cCCCCceEEEe-ecCCCcccCCCCeEEeeccccCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeC
Q 039926 26 QGEGMGAIVRR-SIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTA 104 (302)
Q Consensus 26 ~~~G~g~~v~r-~~~~~~~~~~~Pf~~ld~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtA 104 (302)
...|.|..++. +++.. -..++ ..+....+.|++-++.|.|.+.|=.-|||+|+++..+. |..-.+++||+-||.+
T Consensus 162 ~~g~~g~~~~~~~~~p~-~~~~~--~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~-~~~~~l~~GD~i~~~~ 237 (266)
T PRK11171 162 MPGTDGVWATTRLVDPE-DLRFD--MHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLN-NDWVEVEAGDFIWMRA 237 (266)
T ss_pred cCCCCCeEEEEEeeCch-hcCCC--cEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEEC-CEEEEeCCCCEEEECC
Confidence 34456666654 55533 23344 45677788999889998888899999999999999874 6667899999999987
Q ss_pred CCCeEEEeeeCCCCceeE
Q 039926 105 GRGIVHSEMPAAQGTQKG 122 (302)
Q Consensus 105 GsGI~HsE~~~~~~~~~~ 122 (302)
. ..|.=.|..++++++
T Consensus 238 ~--~~h~~~N~g~~~~~y 253 (266)
T PRK11171 238 Y--CPQACYAGGPGPFRY 253 (266)
T ss_pred C--CCEEEECCCCCcEEE
Confidence 6 567666766676766
No 13
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=96.29 E-value=0.045 Score=47.71 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=50.8
Q ss_pred cEEEEEEECCCCEEEeecCCCCeEEEEEEecceEE--cCCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEeccc
Q 039926 178 TMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLF--GTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGE 252 (302)
Q Consensus 178 ~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i--~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~ 252 (302)
+.++...+++|+...-.......-++||++|++++ ++ +...|.+||.+.+..+..=.+.+.+++.+++|++...
T Consensus 107 ~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~-~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p 182 (185)
T PRK09943 107 LAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTING-QDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTP 182 (185)
T ss_pred eEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEECC-EEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCC
Confidence 34455677888753222222235799999999887 44 3378999999999866544556655678999988653
No 14
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=96.15 E-value=0.0071 Score=54.45 Aligned_cols=63 Identities=30% Similarity=0.522 Sum_probs=46.4
Q ss_pred ccCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEE
Q 039926 56 SVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLW 126 (302)
Q Consensus 56 ~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiW 126 (302)
++.|+..++.|.|.|.| +|+||+|++. |.. +.+.+||+.+..+| ..|+=....++.+-.|=++
T Consensus 133 ~i~pG~~~p~H~H~G~E-~tlVLeG~f~--de~---g~y~~Gd~i~~p~~--~~H~p~a~~~~~Cicl~v~ 195 (215)
T TIGR02451 133 YIEAGQSIPQHTHKGFE-LTLVLHGAFS--DET---GVYGVGDFEEADGS--VQHQPRTVSGGDCLCLAVL 195 (215)
T ss_pred EECCCCccCCCcCCCcE-EEEEEEEEEE--cCC---CccCCCeEEECCCC--CCcCcccCCCCCeEEEEEe
Confidence 56788899999999999 9999999985 333 46999998777766 4576555444555544333
No 15
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=95.99 E-value=0.054 Score=44.71 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=55.2
Q ss_pred eeccccCCCCCCCCCCCCCceEEEEEceeeEEeecC-CCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEeecc
Q 039926 52 LDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDF-EGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLS 130 (302)
Q Consensus 52 ld~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS-~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWinlP 130 (302)
+-.+.+.|+...+.|-|...| +.|||+|+++-.+- -|....|++||+-.+.++ ..|+=.|. +++++ ||+-.|
T Consensus 37 ~~~~~l~pG~~~~~h~h~~~E-~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~~~--~~H~~~N~--e~~~~--l~v~tP 109 (125)
T PRK13290 37 FHETTIYAGTETHLHYKNHLE-AVYCIEGEGEVEDLATGEVHPIRPGTMYALDKH--DRHYLRAG--EDMRL--VCVFNP 109 (125)
T ss_pred EEEEEECCCCcccceeCCCEE-EEEEEeCEEEEEEcCCCEEEEeCCCeEEEECCC--CcEEEEcC--CCEEE--EEEECC
Confidence 344567787777888877656 99999999999843 477889999999999987 66877775 56766 777444
No 16
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=95.91 E-value=0.057 Score=44.21 Aligned_cols=75 Identities=24% Similarity=0.253 Sum_probs=60.9
Q ss_pred EEeeccccCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEe
Q 039926 50 LVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWI 127 (302)
Q Consensus 50 ~~ld~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWi 127 (302)
...-.+.+.|+...+.|-|...+...|||+|++++.=. |....+++||+-++-+| +.|.=.+..+..+.++-+.-
T Consensus 43 ~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~~~l~~Gd~i~ip~g--~~H~~~a~~~~~~~~l~v~~ 117 (131)
T COG1917 43 LSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEKKELKAGDVIIIPPG--VVHGLKAVEDEPMVLLLVFP 117 (131)
T ss_pred EEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCceEecCCCEEEECCC--CeeeeccCCCCceeEEEEee
Confidence 44455677888889999999777888999999999888 99999999999999876 88887766555466777664
No 17
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=95.86 E-value=0.75 Score=41.54 Aligned_cols=150 Identities=21% Similarity=0.382 Sum_probs=92.5
Q ss_pred CCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEeeccccc-CCC-CCceee
Q 039926 65 DHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKY-KMI-EPRYQE 142 (302)
Q Consensus 65 ~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWinlP~~~-k~~-~P~y~~ 142 (302)
+-+-.+.|++-||++|++.-.= .|..-.|++|+--..-+|+|- .=.|.+..+.++. ||.-+-.. .+. .|.-..
T Consensus 77 ~e~d~~ae~~lfVv~Ge~tv~~-~G~th~l~eggyaylPpgs~~--~~~N~~~~~~rfh--w~rk~Y~~VdG~~~P~~~~ 151 (264)
T COG3257 77 PEGDEGAETFLFVVSGEITVKA-EGKTHALREGGYAYLPPGSGW--TLRNAQKEDSRFH--WIRKRYQPVEGVQAPELVS 151 (264)
T ss_pred CCCCCcceEEEEEEeeeEEEEE-cCeEEEeccCCeEEeCCCCcc--eEeeccCCceEEE--EEeecceeecCccCCccee
Confidence 4455599999999999997643 366678999999999999985 4456555555553 66322110 111 222111
Q ss_pred ecCccccee---ecCCeEEEEEecCCCCCcCCccccCCcEEEEEEECCCCEEEeecCCCC--eEEEEEEecceEEc-CCC
Q 039926 143 VSSKDIAEA---AKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSW--NAFVYVLEGEGLFG-TVK 216 (302)
Q Consensus 143 ~~~~~ip~~---~~~g~~~rviaG~~~g~~sp~~~~~~~~~~di~l~~g~~~~~~~~~~~--~~~lyV~~G~v~i~-~~~ 216 (302)
-..+++|.. ..+|...+-+. |-...-++.+-.+.++||++.-+. +.+ ..=+||++|+..-+ +.+
T Consensus 152 ~Ne~ei~~~~m~gtdg~~attv~--------P~d~r~Dmhv~ivsFePGa~ip~a--EtHvmEHGlyvLeGk~vYrLn~d 221 (264)
T COG3257 152 GNESEIEPSPMEGTDGVIATTVL--------PKELRFDMHVHIVSFEPGASIPYA--ETHVMEHGLYVLEGKGVYRLNNN 221 (264)
T ss_pred cChhhCCCCCCCCCCCeEEEeeC--------ccccCcceEEEEEEecCCcccchh--hhhhhhcceEEEecceEEeecCc
Confidence 112233322 23444444332 334667788878899999975432 333 36799999997653 112
Q ss_pred CceecCCceEEEc
Q 039926 217 SSPVSAHHLLLLG 229 (302)
Q Consensus 217 ~~~l~~~d~~~l~ 229 (302)
=..+++||.+.+.
T Consensus 222 wv~V~aGD~mwm~ 234 (264)
T COG3257 222 WVPVEAGDYIWMG 234 (264)
T ss_pred eEEeecccEEEee
Confidence 2678899998875
No 18
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=95.61 E-value=0.15 Score=39.18 Aligned_cols=67 Identities=24% Similarity=0.203 Sum_probs=48.5
Q ss_pred EEEEEEECCCCEEEeecCCCCeEEEEEEecceEEcCCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEecc
Q 039926 179 MYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGG 251 (302)
Q Consensus 179 ~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g 251 (302)
.+.-+++++|+.+...-. .....+|||+|++..++ ..+.+||.+....+..-++.+ +++|.++|-.|
T Consensus 25 ~~~L~r~~pG~~~p~H~H-~g~ee~~VLeG~~~d~~---~~~~~G~~~~~p~g~~h~~~s--~~gc~~~vktg 91 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRH-PGGEEILVLEGELSDGD---GRYGAGDWLRLPPGSSHTPRS--DEGCLILVKTG 91 (91)
T ss_dssp EEEEEEE-TTEEEEEEEE-SS-EEEEEEECEEEETT---CEEETTEEEEE-TTEEEEEEE--SSCEEEEEEES
T ss_pred EEEEEEECCCCCcCccCC-CCcEEEEEEEEEEEECC---ccCCCCeEEEeCCCCccccCc--CCCEEEEEEeC
Confidence 455578899987753322 22478899999999887 788999999999887777776 46888877543
No 19
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=95.47 E-value=0.033 Score=45.50 Aligned_cols=66 Identities=21% Similarity=0.400 Sum_probs=54.7
Q ss_pred ccCCCCCCCCCCCCCceEEEEEceeeEEe--ecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEE
Q 039926 56 SVTAPAGFPDHPHRGFETVTYMLQGAVTH--EDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGL 123 (302)
Q Consensus 56 ~~~~~~gf~~HPHrg~EivTyvl~G~l~H--~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~l 123 (302)
++.|++--..|-|.+.|++-|+|+|+..- .+-+-...+.+|||.-++-+| +-|.+.|.+++++..+
T Consensus 52 Ti~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpg--VPHqp~N~S~ep~s~v 119 (142)
T COG4101 52 TIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPG--VPHQPANLSTEPLSAV 119 (142)
T ss_pred eeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCC--CCCcccccCCCCeEEE
Confidence 45677777899999999999999998653 466666789999999999986 8899999887777654
No 20
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=95.28 E-value=0.0059 Score=47.19 Aligned_cols=74 Identities=24% Similarity=0.339 Sum_probs=51.8
Q ss_pred CCceEEEeecCCCcccCCCCeEEeeccccCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCe
Q 039926 29 GMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGI 108 (302)
Q Consensus 29 G~g~~v~r~~~~~~~~~~~Pf~~ld~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI 108 (302)
..|+.+..+..... ..+....|- ++.|++.+|.|.|.+.|-+ |||+|++.+.| +.+.+|+.-+..+|+
T Consensus 7 ~~Gv~~~~L~~~~~--~~g~~~~L~--r~~pG~~~p~H~H~g~ee~-~VLeG~~~d~~-----~~~~~G~~~~~p~g~-- 74 (91)
T PF12973_consen 7 RPGVSVKPLHRDEG--ETGERVSLL--RLEPGASLPRHRHPGGEEI-LVLEGELSDGD-----GRYGAGDWLRLPPGS-- 74 (91)
T ss_dssp STTEEEEEEEECSS--STTEEEEEE--EE-TTEEEEEEEESS-EEE-EEEECEEEETT-----CEEETTEEEEE-TTE--
T ss_pred CCCEEEEEeccCCC--cccCEEEEE--EECCCCCcCccCCCCcEEE-EEEEEEEEECC-----ccCCCCeEEEeCCCC--
Confidence 35777777774331 234444442 4567888999999998877 99999999755 478999999999886
Q ss_pred EEEeee
Q 039926 109 VHSEMP 114 (302)
Q Consensus 109 ~HsE~~ 114 (302)
.|+=..
T Consensus 75 ~h~~~s 80 (91)
T PF12973_consen 75 SHTPRS 80 (91)
T ss_dssp EEEEEE
T ss_pred ccccCc
Confidence 677653
No 21
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=95.27 E-value=0.13 Score=49.93 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=62.3
Q ss_pred EEeeccccCCCCCCCCCCCCCceEEEEEceeeEEee--cCCCCe--eeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEE
Q 039926 50 LVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHE--DFEGHK--GTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQL 125 (302)
Q Consensus 50 ~~ld~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~--DS~Gn~--~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQi 125 (302)
+-+....+.|+...++|-|.+-+=+-||++|+.+-. |+.|+. ..+++||+-..-. |..|.=.|.+++++++|=+
T Consensus 245 ~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~--g~~H~i~N~G~e~l~fL~i 322 (367)
T TIGR03404 245 IAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPR--NMGHYVENTGDETLVFLEV 322 (367)
T ss_pred EEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECC--CCeEEEEECCCCCEEEEEE
Confidence 445667788988899999999999999999988765 666653 4799999988887 5789999988888999887
Q ss_pred E
Q 039926 126 W 126 (302)
Q Consensus 126 W 126 (302)
|
T Consensus 323 f 323 (367)
T TIGR03404 323 F 323 (367)
T ss_pred E
Confidence 7
No 22
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=94.92 E-value=0.14 Score=42.81 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=55.6
Q ss_pred EEeeccccCCCCCCCCCCCCCceEEEEEceeeEEee--cCCCC---eeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEE
Q 039926 50 LVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHE--DFEGH---KGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQ 124 (302)
Q Consensus 50 ~~ld~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~--DS~Gn---~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQ 124 (302)
+.+-...+.|+..++.|-|.+-+-+-||++|++.-. |.-|+ ...+++||+-.+.+| +.|...|.+++++.++
T Consensus 30 ~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g--~~H~~~n~~~~~~~~l- 106 (146)
T smart00835 30 ISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQG--HPHFQVNSGDENLEFV- 106 (146)
T ss_pred eEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCC--CEEEEEcCCCCCEEEE-
Confidence 334445677887889999986677889999987653 32221 567999999999887 7899998877888886
Q ss_pred EEe
Q 039926 125 LWI 127 (302)
Q Consensus 125 iWi 127 (302)
|+
T Consensus 107 -~~ 108 (146)
T smart00835 107 -AF 108 (146)
T ss_pred -EE
Confidence 55
No 23
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=94.51 E-value=1.1 Score=37.21 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=59.4
Q ss_pred eeecCCeEEEEEecCCCCCcCC-ccccCCcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEc----CC-------CC
Q 039926 150 EAAKDGIKVRVIAGEALGVKSP-IYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFG----TV-------KS 217 (302)
Q Consensus 150 ~~~~~g~~~rviaG~~~g~~sp-~~~~~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~----~~-------~~ 217 (302)
....+++.++.+.+. +-| +.......+..+.+++|+-..--.. ....++||++|++++. +. ..
T Consensus 9 ~~~~~~G~~~~~~~~----~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~ 83 (144)
T PF00190_consen 9 RVSNEGGRIREADSE----DFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFS 83 (144)
T ss_dssp EEEETTEEEEEESTT----TSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEE
T ss_pred cccCCCEEEEEEChh----hCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeee
Confidence 445566788888654 234 2334455556667799887664444 6678999999999863 21 11
Q ss_pred ce--ecCCceEEEcCCCeEEEEecCCCCeE
Q 039926 218 SP--VSAHHLLLLGSGDGLEAWNKFSKPLR 245 (302)
Q Consensus 218 ~~--l~~~d~~~l~~~~~l~l~a~~~~~a~ 245 (302)
.. +++||...+..|-...+.+.+++++.
T Consensus 84 ~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~ 113 (144)
T PF00190_consen 84 QKVRLKAGDVFVVPAGHPHWIINDGDDEAL 113 (144)
T ss_dssp EEEEEETTEEEEE-TT-EEEEEECSSSSEE
T ss_pred ceeeeecccceeeccceeEEEEcCCCCCCE
Confidence 34 99999999998888888886423443
No 24
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=93.84 E-value=0.15 Score=47.99 Aligned_cols=68 Identities=19% Similarity=0.117 Sum_probs=48.6
Q ss_pred cccCCCCeEEeeccc------cCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEee
Q 039926 42 ELRYFDPFLVLDEFS------VTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEM 113 (302)
Q Consensus 42 ~~~~~~Pf~~ld~~~------~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~ 113 (302)
....+||++..-.-. -.+...+++|-|..+|++ |+++|.+...-. |..-.+.+|++-|+.+| +.|+-.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~HwH~e~Ei~-yv~~G~~~~~i~-g~~~~l~~Gd~ili~s~--~~H~~~ 85 (302)
T PRK10371 12 EKQTRSPLSLYSEYQRLEIEFRPPHIMPTSHWHGQVEVN-VPFDGDVEYLIN-NEKVQINQGHITLFWAC--TPHQLT 85 (302)
T ss_pred CCCCCCCcccccCCceeEEEeeCCCCCCCCCccccEEEE-EecCCcEEEEEC-CEEEEEcCCcEEEEecC--Cccccc
Confidence 344566665543322 123346789999999998 999999976554 77789999999999655 777643
No 25
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=93.55 E-value=0.39 Score=48.13 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=56.0
Q ss_pred CCcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEc--CCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEecccc
Q 039926 176 TPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFG--TVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEP 253 (302)
Q Consensus 176 ~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~--~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~P 253 (302)
..+.+..+.++||++..........-..||++|++++. + +...|.+||.+.+..+..=.+.+.+++++++|.+...+
T Consensus 374 ~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg-~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~ 452 (468)
T TIGR01479 374 DRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD-ETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGS 452 (468)
T ss_pred CCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC-EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 35667778899999655433333344459999998874 4 33789999999999887777887777889988765533
No 26
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=93.42 E-value=0.41 Score=43.20 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=49.2
Q ss_pred EEEECCCC-EEEeecCCCCeEEEEEEecceEE--cCCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEec
Q 039926 182 DFTLKPGA-HLRQPILRSWNAFVYVLEGEGLF--GTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVG 250 (302)
Q Consensus 182 di~l~~g~-~~~~~~~~~~~~~lyV~~G~v~i--~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~ 250 (302)
.+++.++. +-.-...++..+++||++|++++ +| +...|.+|+-+.+..|..-++++.+.+++||-++-
T Consensus 65 ive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G-~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 65 IVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEG-KTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred eEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcC-eEEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence 35664443 32222335667999999999887 34 33789999999999888888886556789988763
No 27
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=93.19 E-value=0.65 Score=37.88 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=45.6
Q ss_pred CcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEcC-CCCceecCCceEEEcCCCeEEEEec
Q 039926 177 PTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGT-VKSSPVSAHHLLLLGSGDGLEAWNK 239 (302)
Q Consensus 177 ~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~-~~~~~l~~~d~~~l~~~~~l~l~a~ 239 (302)
.+.+..+.+++|++...-..+.+..++||++|.+++.- .....+.+||.+.+..+..=.+.|.
T Consensus 42 ~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~ 105 (131)
T COG1917 42 NLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKAV 105 (131)
T ss_pred eEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeeccC
Confidence 45566788999998765444456699999999998842 2337899999999986654444554
No 28
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=93.08 E-value=0.82 Score=35.22 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=43.2
Q ss_pred EEECCCCEEEeecCCCCeEEEEEEecceEEc-CCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEe
Q 039926 183 FTLKPGAHLRQPILRSWNAFVYVLEGEGLFG-TVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLV 249 (302)
Q Consensus 183 i~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~-~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~ 249 (302)
+.|.++++-...-........||++|.+++. ..+...+..|+...+..+..-.|++.++++|++++.
T Consensus 17 l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 17 LELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp EEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred EEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 4677777665443333346789999998874 213367889999999899999999887778887653
No 29
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=93.05 E-value=0.93 Score=37.11 Aligned_cols=77 Identities=22% Similarity=0.256 Sum_probs=55.2
Q ss_pred CcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEc-CCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEecccc
Q 039926 177 PTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFG-TVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEP 253 (302)
Q Consensus 177 ~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~-~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~P 253 (302)
...+..+.+++|+...+.....+.=+.||++|++.+. +.....|.+||.+.+..|..=.+.+.+..+..+|-+...+
T Consensus 35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~ 112 (127)
T COG0662 35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPP 112 (127)
T ss_pred cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCC
Confidence 3455667889999887777666667899999998773 2233789999999999888777887654445555554433
No 30
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=93.04 E-value=0.44 Score=40.79 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=59.9
Q ss_pred eeccccCCCC-CCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEE
Q 039926 52 LDEFSVTAPA-GFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLW 126 (302)
Q Consensus 52 ld~~~~~~~~-gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiW 126 (302)
+|...+.|+. .-..|-|.-=|=+.|||+|+.+-+-. |....|+|||+-=..||.|..|.=.|.++..+++|-+=
T Consensus 44 vn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d-~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG 118 (161)
T COG3837 44 VNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED-GGETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVG 118 (161)
T ss_pred cceEEeCCCCccccccccccCceEEEEEcCceEEEEC-CeeEEecCCceeeccCCCcceeEEeecCCceEEEEEec
Confidence 4555667762 35689999999999999999988754 34578999999999999999999999877777776553
No 31
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=93.01 E-value=0.23 Score=36.93 Aligned_cols=49 Identities=31% Similarity=0.396 Sum_probs=38.6
Q ss_pred CCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCC-CCeEEEee
Q 039926 63 FPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAG-RGIVHSEM 113 (302)
Q Consensus 63 f~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAG-sGI~HsE~ 113 (302)
|..+... .|++ |||+|+++=.|..|....++|||+-.+.+| +|.++...
T Consensus 19 ~~~~~~~-~E~~-~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v~~ 68 (74)
T PF05899_consen 19 FPWPYPE-DEFF-YVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEVRE 68 (74)
T ss_dssp EEEEESS-EEEE-EEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEEEE
T ss_pred eEeeCCC-CEEE-EEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEECe
Confidence 4444333 7777 999999999999999999999999999999 46665543
No 32
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=93.00 E-value=0.73 Score=46.19 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=53.7
Q ss_pred EeeccccCCCCCCC--CCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEee
Q 039926 51 VLDEFSVTAPAGFP--DHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWIN 128 (302)
Q Consensus 51 ~ld~~~~~~~~gf~--~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWin 128 (302)
.+-...+.|+...+ .|+|+. |++ ||++|+++-.-. |....|++||.-.+.+|. .|+=.|.+++++++ ||+.
T Consensus 377 ~~~~~~i~PG~~~~~h~H~~~~-E~~-~Vl~G~~~v~~d-g~~~~l~~GDsi~ip~~~--~H~~~N~g~~~~~~--i~v~ 449 (468)
T TIGR01479 377 QVKRITVKPGEKLSLQMHHHRA-EHW-IVVSGTARVTIG-DETLLLTENESTYIPLGV--IHRLENPGKIPLEL--IEVQ 449 (468)
T ss_pred EEEEEEECCCCccCccccCCCc-eEE-EEEeeEEEEEEC-CEEEEecCCCEEEECCCC--cEEEEcCCCCCEEE--EEEE
Confidence 33344567776555 466654 776 999999987532 566789999999999874 89988987888887 6664
Q ss_pred ccc
Q 039926 129 LSS 131 (302)
Q Consensus 129 lP~ 131 (302)
.|.
T Consensus 450 ~~~ 452 (468)
T TIGR01479 450 SGS 452 (468)
T ss_pred cCC
Confidence 443
No 33
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=92.57 E-value=0.59 Score=47.07 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=56.9
Q ss_pred ccCCcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEE--cCCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEec
Q 039926 174 TRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLF--GTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVG 250 (302)
Q Consensus 174 ~~~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i--~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~ 250 (302)
......+..++++||++..........=+.||++|++++ ++ ....|.+||.+.+..+..=.+++.+++++++|-+.
T Consensus 381 ~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg-~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~ 458 (478)
T PRK15460 381 AGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG-DIKLLGENESIYIPLGATHCLENPGKIPLDLIEVR 458 (478)
T ss_pred CCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC-EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 344567788899999976555444445788999999887 44 23789999999999877667888767788877654
No 34
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=92.23 E-value=1 Score=38.42 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=54.3
Q ss_pred cEEEEEEECCCCEEEeecCCCCeEEEEEEecceEE--cCCCCceecCCceEEEcCCCeEEEEecCCCCeEEE
Q 039926 178 TMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLF--GTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFV 247 (302)
Q Consensus 178 ~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i--~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~l 247 (302)
..+-.+.+.||+++++.....+.-.-+|++|.+.+ ++ ....+.+||.+.+..|..=+|++.+..+.+|+
T Consensus 63 ~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~-~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~I 133 (151)
T PF01050_consen 63 YKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD-EEFTLKEGDSVYIPRGAKHRIENPGKTPLEII 133 (151)
T ss_pred EEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECC-EEEEEcCCCEEEECCCCEEEEECCCCcCcEEE
Confidence 44566788999999999988888888999999877 44 23689999999999888778887544444544
No 35
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=92.15 E-value=1.7 Score=37.69 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=47.7
Q ss_pred cCCCCCC-CCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEeecc
Q 039926 57 VTAPAGF-PDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLS 130 (302)
Q Consensus 57 ~~~~~gf-~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWinlP 130 (302)
+.|+... ..|.|.+.|++ ||++|+++-.= -|..-.|++||.-++.++ +.|.=.|.++.+++++ |+.-|
T Consensus 114 ~~pg~~~~~~~~h~~~E~~-~Vl~G~~~~~~-~~~~~~l~~Gd~~~~~~~--~~H~~~n~~~~~~~~l--~~~~p 182 (185)
T PRK09943 114 YQPGTTTGERIKHQGEEIG-TVLEGEIVLTI-NGQDYHLVAGQSYAINTG--IPHSFSNTSAGICRII--SAHTP 182 (185)
T ss_pred ccCCCCcccccccCCcEEE-EEEEeEEEEEE-CCEEEEecCCCEEEEcCC--CCeeeeCCCCCCeEEE--EEeCC
Confidence 3444332 35667776555 89999999752 345678999999999985 7798777666777664 44344
No 36
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=91.41 E-value=3.4 Score=33.79 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=56.4
Q ss_pred eeccccCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEe
Q 039926 52 LDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWI 127 (302)
Q Consensus 52 ld~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWi 127 (302)
+.+..+.|+..+++|.|...+=+=||++|+..=..- |....|++||+-+.-|| ..|.=.|....++.++=++.
T Consensus 38 ~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~-~~~~~v~~gd~~~iP~g--~~H~~~N~G~~~L~liei~~ 110 (127)
T COG0662 38 IARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG-GEEVEVKAGDSVYIPAG--TPHRVRNTGKIPLVLIEVQS 110 (127)
T ss_pred EEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC-CEEEEecCCCEEEECCC--CcEEEEcCCCcceEEEEEec
Confidence 445556777666666666677778999988765444 77789999999998876 78999998778888888875
No 37
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=90.59 E-value=0.83 Score=35.98 Aligned_cols=64 Identities=33% Similarity=0.529 Sum_probs=40.7
Q ss_pred CCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEeecc
Q 039926 61 AGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLS 130 (302)
Q Consensus 61 ~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWinlP 130 (302)
..+++|-|..+|++ |+++|+..+.- -|..-.++||++-|+..|. .|+=...+++ ..-..||.++
T Consensus 14 ~~~~~h~h~~~~i~-~v~~G~~~~~~-~~~~~~l~~g~~~li~p~~--~H~~~~~~~~--~~~~~~i~~~ 77 (136)
T PF02311_consen 14 FEFPPHWHDFYEII-YVLSGEGTLHI-DGQEYPLKPGDLFLIPPGQ--PHSYYPDSNE--PWEYYWIYFS 77 (136)
T ss_dssp -SEEEETT-SEEEE-EEEEE-EEEEE-TTEEEEE-TT-EEEE-TTS---EEEEE-TTS--EEEEEEEEE-
T ss_pred CccCCEECCCEEEE-EEeCCEEEEEE-CCEEEEEECCEEEEecCCc--cEEEecCCCC--CEEEEEEEEC
Confidence 35678999999986 99999999943 2455789999999999875 7887665444 4455566544
No 38
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=90.52 E-value=1.1 Score=40.29 Aligned_cols=73 Identities=11% Similarity=0.025 Sum_probs=52.3
Q ss_pred cEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEcCCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEeccccc
Q 039926 178 TMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPI 254 (302)
Q Consensus 178 ~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~P~ 254 (302)
..+.-+++++|+.+-.-...+.. +.+|++|++.-++ ..+.+||.+.+..+..-+..+.+++++-.|.+.-.|+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G~E-~tlVLeG~f~de~---g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~dapl 199 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKGFE-LTLVLHGAFSDET---GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLDAPL 199 (215)
T ss_pred cEEEEEEECCCCccCCCcCCCcE-EEEEEEEEEEcCC---CccCCCeEEECCCCCCcCcccCCCCCeEEEEEecCCc
Confidence 44555688999976544444444 6799999987554 6789999999988777777776445577776665555
No 39
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=89.45 E-value=0.72 Score=42.81 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=49.1
Q ss_pred EEECCCCEEEeecCCCCeEEEEEEecceEEcC--CCCceecCC--------ceEEEcCCCeEEEEecCCCCeEEEEeccc
Q 039926 183 FTLKPGAHLRQPILRSWNAFVYVLEGEGLFGT--VKSSPVSAH--------HLLLLGSGDGLEAWNKFSKPLRFVLVGGE 252 (302)
Q Consensus 183 i~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~--~~~~~l~~~--------d~~~l~~~~~l~l~a~~~~~a~~ll~~g~ 252 (302)
++|++|+++++.+ .++..-+.+++|+++|.. .+...+..+ |.+.+..+..++|+|. ++++|.++++.
T Consensus 32 l~L~~g~~~~~~~-~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~--~~ae~~~~sap 108 (261)
T PF04962_consen 32 LRLEAGESLEFEL-ERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFAS--TDAEFAVCSAP 108 (261)
T ss_dssp EEEECCHCCCCCC-CSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEES--STEEEEEEEEE
T ss_pred EEecCCCEEeccC-CCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEc--CCCEEEEEccc
Confidence 5788999888773 456688888899998853 123567777 9999998888999984 57999988764
Q ss_pred cc
Q 039926 253 PI 254 (302)
Q Consensus 253 P~ 254 (302)
-.
T Consensus 109 a~ 110 (261)
T PF04962_consen 109 AH 110 (261)
T ss_dssp -S
T ss_pred cC
Confidence 43
No 40
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=88.40 E-value=13 Score=35.90 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=41.3
Q ss_pred cCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCc
Q 039926 57 VTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGT 119 (302)
Q Consensus 57 ~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~ 119 (302)
+.|+.--++|-|... .|-+|++|+-...==-|.+-.+++||+-..-+ +.+|+=.|.++++
T Consensus 88 l~pGe~~~~HRht~s-Al~~vveG~G~~t~V~g~~~~~~~gD~~~tP~--w~wH~H~n~~d~~ 147 (335)
T TIGR02272 88 ILPGEVAPSHRHTQS-ALRFIVEGKGAFTAVDGERTTMHPGDFIITPS--WTWHDHGNPGDEP 147 (335)
T ss_pred eCCCCCCCccccccc-eEEEEEEcCceEEEECCEEEeeeCCCEEEeCC--CeeEecccCCCCc
Confidence 355555677888755 88899998754322245677899999987754 5788877765554
No 41
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=88.01 E-value=9.2 Score=35.38 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=38.4
Q ss_pred CceEEEeecCCCcccCCCCeEEeeccccCCCCCC--CCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCC
Q 039926 30 MGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGF--PDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRG 107 (302)
Q Consensus 30 ~g~~v~r~~~~~~~~~~~Pf~~ld~~~~~~~~gf--~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsG 107 (302)
.+...+++.+.+. .-+|+.++-.| +.|| |+|-|. ...--||++|.+.+-|---...-|.+|..-++-||
T Consensus 20 ~~~~~~~L~gd~~--~~g~~~~~vkf----~~g~~~pph~H~-~~~~~~Vi~G~~~~~~~~a~~~~l~~Gsy~~~PaG-- 90 (251)
T PF14499_consen 20 KGPGAAVLWGDPT--KDGPSGMRVKF----PAGFSSPPHIHN-ADYRGTVISGELHNGDPKAAAMWLPAGSYWFQPAG-- 90 (251)
T ss_dssp S--EEEEEEEE----TTS-EEEEEEE-----TT-EE--BEES-S-EEEEEEESEEEETTEE-----E-TTEEEEE-TT--
T ss_pred CCcceeeeecCcc--cCCcceEEEEc----CCCccCCCccee-eeEEEEEEEeEEEcCCCcccceecCCCceEeccCC--
Confidence 4778888888663 34777776433 3455 788887 44555789999988543222233677777666666
Q ss_pred eEEEee
Q 039926 108 IVHSEM 113 (302)
Q Consensus 108 I~HsE~ 113 (302)
-.|--.
T Consensus 91 ~~h~~~ 96 (251)
T PF14499_consen 91 EPHITA 96 (251)
T ss_dssp -EEEET
T ss_pred Cceeee
Confidence 555443
No 42
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=87.96 E-value=2.5 Score=36.12 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=44.7
Q ss_pred cEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEc--CCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEec
Q 039926 178 TMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFG--TVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVG 250 (302)
Q Consensus 178 ~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~--~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~ 250 (302)
+..=-.+|++ +++.+.+ .+.=+-||++|+++|. | .....++||.+.|..|..|++.+. +.++++.+.
T Consensus 77 l~~Gf~~le~-~~f~wtl--~YDEi~~VlEG~L~i~~~G-~~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv~ 145 (152)
T PF06249_consen 77 LSAGFMELEK-TSFPWTL--TYDEIKYVLEGTLEISIDG-QTVTAKPGDVIFIPKGSTITFSTP--DYARFFYVT 145 (152)
T ss_dssp SEEEEEEEEE-EEEEEE---SSEEEEEEEEEEEEEEETT-EEEEEETT-EEEE-TT-EEEEEEE--EEEEEEEEE
T ss_pred eeeEEEEEeC-CCccEEe--ecceEEEEEEeEEEEEECC-EEEEEcCCcEEEECCCCEEEEecC--CCEEEEEEE
Confidence 3333345554 4666665 4667899999999884 3 124677999999999999999874 468877665
No 43
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=87.87 E-value=0.75 Score=40.38 Aligned_cols=51 Identities=25% Similarity=0.273 Sum_probs=34.5
Q ss_pred CCCCeEEEEEEecceEEcCC-CCceecCCceEEEcCCCeEEEEecCCCCeEEEEec
Q 039926 196 LRSWNAFVYVLEGEGLFGTV-KSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVG 250 (302)
Q Consensus 196 ~~~~~~~lyV~~G~v~i~~~-~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~ 250 (302)
+.....++|+++|++.+... +...|.++|++.+++.+.+.++. ++++|+++
T Consensus 132 ~~~~~~l~~~~~G~~~i~~~~~~~~L~~~d~l~~~~~~~~~l~~----~g~ll~v~ 183 (184)
T PF05962_consen 132 PAASTVLVYVLEGAWSITEGGNCISLSAGDLLLIDDEEDLPLTG----DGQLLWVS 183 (184)
T ss_dssp E--SEEEEEESSS-EEECCCEEEEEE-TT-EEEEESEECEEEEE----ECCEEEEE
T ss_pred CCCCEEEEEEeeCcEEEecCCCceEcCCCCEEEEeCCCceEecC----CeeEEEEe
Confidence 56677899999999999432 23789999999998876777765 45666653
No 44
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=87.57 E-value=4 Score=33.54 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=55.1
Q ss_pred CCcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEc--CC--CCceecCCceEEEcCCC-eEEEEecCCCCeEEEEec
Q 039926 176 TPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFG--TV--KSSPVSAHHLLLLGSGD-GLEAWNKFSKPLRFVLVG 250 (302)
Q Consensus 176 ~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~--~~--~~~~l~~~d~~~l~~~~-~l~l~a~~~~~a~~ll~~ 250 (302)
+-+++--+.+.+|+...--+..++...|||++|.+..- ++ ......+||++.+..+- -....+ +++.+-.++.-
T Consensus 44 s~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~-S~ep~s~vIaR 122 (142)
T COG4101 44 SGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANL-STEPLSAVIAR 122 (142)
T ss_pred ceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCccccc-CCCCeEEEEEc
Confidence 34566667999999888788889999999999999873 21 11456799999997542 122222 24567677766
Q ss_pred ccccC
Q 039926 251 GEPIG 255 (302)
Q Consensus 251 g~P~~ 255 (302)
.+|-.
T Consensus 123 sDp~~ 127 (142)
T COG4101 123 SDPNP 127 (142)
T ss_pred cCCCC
Confidence 67663
No 45
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=87.50 E-value=2.8 Score=35.92 Aligned_cols=95 Identities=23% Similarity=0.220 Sum_probs=56.1
Q ss_pred EEEEecCCCCCcCCccccCCcEEEEEEECCCCEEEeecCCCC-eEEEEEEecceEE--cCCCCceecCCceEEEcCCC--
Q 039926 158 VRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSW-NAFVYVLEGEGLF--GTVKSSPVSAHHLLLLGSGD-- 232 (302)
Q Consensus 158 ~rviaG~~~g~~sp~~~~~~~~~~di~l~~g~~~~~~~~~~~-~~~lyV~~G~v~i--~~~~~~~l~~~d~~~l~~~~-- 232 (302)
.|...|.+.|.+ ++-+-...++||..-.+.-.... .=|+|||+|++++ ++. ...|.+||.+.|..|.
T Consensus 29 ~~~~lG~~~Gl~-------~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~-e~~lrpGD~~gFpAG~~~ 100 (161)
T COG3837 29 TRTRLGDALGLK-------RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG-ETRLRPGDSAGFPAGVGN 100 (161)
T ss_pred hhhhhhhhcChh-------hcccceEEeCCCCccccccccccCceEEEEEcCceEEEECCe-eEEecCCceeeccCCCcc
Confidence 444556655432 22233357799987654433222 3699999999877 432 2789999999998654
Q ss_pred eEEEEecCCCCeEEEEecccccCCceeec
Q 039926 233 GLEAWNKFSKPLRFVLVGGEPIGEPVAQL 261 (302)
Q Consensus 233 ~l~l~a~~~~~a~~ll~~g~P~~epi~~~ 261 (302)
.=.|.+.++..+ .+|..|.-....+..|
T Consensus 101 aHhliN~s~~~~-~yL~vG~r~~~d~i~Y 128 (161)
T COG3837 101 AHHLINRSDVIL-RYLEVGTREPDDIITY 128 (161)
T ss_pred eeEEeecCCceE-EEEEeccccccceeec
Confidence 345666543333 3444444444454433
No 46
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=87.24 E-value=2.7 Score=38.46 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=44.5
Q ss_pred CCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEe
Q 039926 62 GFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWI 127 (302)
Q Consensus 62 gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWi 127 (302)
-+++|-|..+|+ .|+++|.+.+.- -|..-.+.+|++-|+++| ..|......+. ..++-+.+
T Consensus 35 ~~~~H~H~~~ei-~~v~~G~~~~~i-~~~~~~l~~g~l~~i~p~--~~H~~~~~~~~-~~~~~l~~ 95 (278)
T PRK10296 35 VSGLHQHDYYEF-TLVLTGRYYQEI-NGKRVLLERGDFVFIPLG--SHHQSFYEFGA-TRILNVGI 95 (278)
T ss_pred CCCCcccccEEE-EEEEeceEEEEE-CCEEEEECCCcEEEeCCC--CccceeeeCCC-cEEEEEEe
Confidence 468999998887 899999998765 355678999999999766 77865433222 34555554
No 47
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=87.04 E-value=1.7 Score=37.14 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=38.1
Q ss_pred CeEEEEEEecceEEc--CCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEec
Q 039926 199 WNAFVYVLEGEGLFG--TVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVG 250 (302)
Q Consensus 199 ~~~~lyV~~G~v~i~--~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~ 250 (302)
+.-.-|||+|.+.|- |++ ..-++||.+.+..|..|+|... ..|+||++.
T Consensus 118 yDe~d~VlEGrL~V~~~g~t-v~a~aGDvifiPKgssIefst~--gea~flyvt 168 (176)
T COG4766 118 YDEIDYVLEGRLHVRIDGRT-VIAGAGDVIFIPKGSSIEFSTT--GEAKFLYVT 168 (176)
T ss_pred ccceeEEEeeeEEEEEcCCe-EecCCCcEEEecCCCeEEEecc--ceEEEEEEE
Confidence 334679999998873 421 5567999999999999999875 359999886
No 48
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=86.70 E-value=4.5 Score=35.84 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=59.1
Q ss_pred EEeeccccCCCCC------CCCCCCC--CceEEEEEceeeEEee--cCCCC--eeeeCCCceEEEeCCCCeEEEeeeCCC
Q 039926 50 LVLDEFSVTAPAG------FPDHPHR--GFETVTYMLQGAVTHE--DFEGH--KGTIGPGDLQWMTAGRGIVHSEMPAAQ 117 (302)
Q Consensus 50 ~~ld~~~~~~~~g------f~~HPHr--g~EivTyvl~G~l~H~--DS~Gn--~~~i~~G~vQwmtAGsGI~HsE~~~~~ 117 (302)
+.++.-.+.|+.- -+.|-|. +..=+-|+++|+-.+. |..|. ...++||++-++.+ |..|.-.|.++
T Consensus 68 L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPp--g~~H~~iN~G~ 145 (191)
T PRK04190 68 LNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPP--YWAHRSVNTGD 145 (191)
T ss_pred eEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECC--CCcEEeEECCC
Confidence 4455555566542 1235554 5456779999887663 44343 46899999999998 57899999888
Q ss_pred CceeEEEEEeecccccCCCCCceeeec
Q 039926 118 GTQKGLQLWINLSSKYKMIEPRYQEVS 144 (302)
Q Consensus 118 ~~~~~lQiWinlP~~~k~~~P~y~~~~ 144 (302)
+++.++=+| |+. ....|+.+.
T Consensus 146 epl~fl~v~---p~~---~~~dY~~i~ 166 (191)
T PRK04190 146 EPLVFLACY---PAD---AGHDYGTIA 166 (191)
T ss_pred CCEEEEEEE---cCC---cccccHHHH
Confidence 889888766 432 466787654
No 49
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=83.67 E-value=2.7 Score=31.09 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=33.8
Q ss_pred EECCCCEEEeecCCCCeEEEEEEecceEEcCCC--CceecCCceEEEcCCCeEEEEe
Q 039926 184 TLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVK--SSPVSAHHLLLLGSGDGLEAWN 238 (302)
Q Consensus 184 ~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~~--~~~l~~~d~~~l~~~~~l~l~a 238 (302)
..++|. +....+. .=++||++|+++|...+ ...+.+||++.|..|-..+.+.
T Consensus 13 ~~~pg~-~~~~~~~--~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 13 ECTPGK-FPWPYPE--DEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp EEECEE-EEEEESS--EEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEE
T ss_pred EECCce-eEeeCCC--CEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEE
Confidence 345553 3333333 77889999999995422 2678899999998775544443
No 50
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=83.06 E-value=2.6 Score=34.40 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=36.5
Q ss_pred CCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCC-CCeE
Q 039926 62 GFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAG-RGIV 109 (302)
Q Consensus 62 gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAG-sGI~ 109 (302)
.|..+- +..=.-++|+|..+-.+.-|..-.++|||+-.+.|| +|++
T Consensus 56 ~~r~~y--~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g~W 102 (116)
T COG3450 56 KFRVTY--DEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKGTW 102 (116)
T ss_pred cceEEc--ccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeEEE
Confidence 444433 334456889999999999999999999999999999 5664
No 51
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=82.60 E-value=10 Score=38.32 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=51.5
Q ss_pred eeccccCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEeeccc
Q 039926 52 LDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSS 131 (302)
Q Consensus 52 ld~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWinlP~ 131 (302)
+-...+.|+...+.|.|+.-+=+=||++|+++-.-. |..-.|++||.-.+.+| ..|.=.|..++++++ |||..|+
T Consensus 387 v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id-g~~~~L~~GDSi~ip~g--~~H~~~N~g~~~l~i--I~V~~g~ 461 (478)
T PRK15460 387 VKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID-GDIKLLGENESIYIPLG--ATHCLENPGKIPLDL--IEVRSGS 461 (478)
T ss_pred EEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC-CEEEEecCCCEEEECCC--CcEEEEcCCCCCEEE--EEEEcCC
Confidence 334456777655445444444445699999986433 45678999999999876 678888877777876 5665554
No 52
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=81.50 E-value=13 Score=26.77 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=40.3
Q ss_pred EEECCCCEEEeecCCCCeEEEEEEecceEEc--C-CCCceecCCceEEEcCCCeEEEEe
Q 039926 183 FTLKPGAHLRQPILRSWNAFVYVLEGEGLFG--T-VKSSPVSAHHLLLLGSGDGLEAWN 238 (302)
Q Consensus 183 i~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~--~-~~~~~l~~~d~~~l~~~~~l~l~a 238 (302)
..|.+|+.+.+....+ .-|-|.+|.+=+. + .++.-|.+||.+.+..++.+.+++
T Consensus 2 ~~L~~g~~~~lr~~~~--~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG--QRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCCC--cEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 4678888888776544 4499999998773 2 233778899988888888888877
No 53
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=80.12 E-value=4.5 Score=33.53 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=46.1
Q ss_pred ccCCCCCCCCCCCCCceEEEEEceeeEE--eecCCC-------Ceee--eCCCceEEEeCCCCeEEEeeeCCCCceeEEE
Q 039926 56 SVTAPAGFPDHPHRGFETVTYMLQGAVT--HEDFEG-------HKGT--IGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQ 124 (302)
Q Consensus 56 ~~~~~~gf~~HPHrg~EivTyvl~G~l~--H~DS~G-------n~~~--i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQ 124 (302)
.+.|+.-+.+|-| +-.-+.||++|+.. --+.-+ .... +++|||-++.+| ..|.-.|.++.....|=
T Consensus 40 ~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G--~~h~~~n~~~~~~~~~~ 116 (144)
T PF00190_consen 40 LIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAG--HPHWIINDGDDEALVLI 116 (144)
T ss_dssp EEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT---EEEEEECSSSSEEEEE
T ss_pred ehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccc--eeEEEEcCCCCCCEEEE
Confidence 3466666789999 88889999998876 233333 2344 999999999987 67888887534444444
Q ss_pred EE
Q 039926 125 LW 126 (302)
Q Consensus 125 iW 126 (302)
++
T Consensus 117 ~f 118 (144)
T PF00190_consen 117 IF 118 (144)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 54
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=79.62 E-value=12 Score=34.23 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=40.1
Q ss_pred CEEEeecCCCCeEEEEEEecceEE--cCCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEe
Q 039926 189 AHLRQPILRSWNAFVYVLEGEGLF--GTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLV 249 (302)
Q Consensus 189 ~~~~~~~~~~~~~~lyV~~G~v~i--~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~ 249 (302)
+++.+.+ .+.=+.||++|++++ +| +...+.+||.+.+..|..+.+... ..++++.+
T Consensus 167 ~sf~wtl--~~dEi~YVLEGe~~l~IdG-~t~~l~pGDvlfIPkGs~~hf~tp--~~aRflyV 224 (233)
T PRK15457 167 AFFPWTL--NYDEIDMVLEGELHVRHEG-ETMIAKAGDVMFIPKGSSIEFGTP--SSVRFLYV 224 (233)
T ss_pred Cccceec--cceEEEEEEEeEEEEEECC-EEEEeCCCcEEEECCCCeEEecCC--CCeeEEEE
Confidence 4444443 456789999999877 44 237899999999998887777442 46777554
No 55
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=78.19 E-value=4 Score=34.92 Aligned_cols=42 Identities=26% Similarity=0.514 Sum_probs=33.4
Q ss_pred CceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEe
Q 039926 70 GFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSE 112 (302)
Q Consensus 70 g~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE 112 (302)
..+=+-||++|+++-.+. |+.-+-+||||-|+..|+=|.-+-
T Consensus 94 ~YDEi~~VlEG~L~i~~~-G~~~~A~~GDvi~iPkGs~I~fst 135 (152)
T PF06249_consen 94 TYDEIKYVLEGTLEISID-GQTVTAKPGDVIFIPKGSTITFST 135 (152)
T ss_dssp SSEEEEEEEEEEEEEEET-TEEEEEETT-EEEE-TT-EEEEEE
T ss_pred ecceEEEEEEeEEEEEEC-CEEEEEcCCcEEEECCCCEEEEec
Confidence 456677999999999866 999999999999999999888753
No 56
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=78.12 E-value=32 Score=28.44 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=55.3
Q ss_pred cEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEcCC---CCceecCCceEEEcCCCeEEEEecCCCCeEEEEeccccc
Q 039926 178 TMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTV---KSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPI 254 (302)
Q Consensus 178 ~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~---~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~P~ 254 (302)
..+-+-.+.+|++..+-- +++--.+|+++|+.+|... +...|++|.+-+++.-+.-.++|. ++.+++-+--.|+
T Consensus 35 FS~h~T~i~aGtet~~~Y-knHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~--~dm~~vCVFnPpl 111 (126)
T PF06339_consen 35 FSFHETTIYAGTETHIHY-KNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAK--TDMRLVCVFNPPL 111 (126)
T ss_pred EEEEEEEEeCCCeeEEEe-cCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEec--CCEEEEEEcCCCC
Confidence 455666788999877553 4566789999999998532 236889999999987778888885 4777777666666
No 57
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=75.86 E-value=16 Score=31.10 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=53.9
Q ss_pred eccccCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEe
Q 039926 53 DEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWI 127 (302)
Q Consensus 53 d~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWi 127 (302)
....+.|+.-+..|-|.--.-.=+|++|...=.= -++...+.+|+.-++.+| ..|.=.|.+..++.++.+=.
T Consensus 66 kri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~-~~~~~~~~~g~sv~Ip~g--~~H~i~n~g~~~L~~IEVq~ 137 (151)
T PF01050_consen 66 KRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL-DDEEFTLKEGDSVYIPRG--AKHRIENPGKTPLEIIEVQT 137 (151)
T ss_pred EEEEEcCCCccceeeecccccEEEEEeCeEEEEE-CCEEEEEcCCCEEEECCC--CEEEEECCCCcCcEEEEEec
Confidence 3345688888888888877888888887765542 355678999999888865 78998887677788776543
No 58
>PLN02288 mannose-6-phosphate isomerase
Probab=75.34 E-value=30 Score=34.08 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=34.0
Q ss_pred CcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEcCCCC---ceecCCceEEEcCCC
Q 039926 177 PTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKS---SPVSAHHLLLLGSGD 232 (302)
Q Consensus 177 ~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~~~---~~l~~~d~~~l~~~~ 232 (302)
+..+..+++.++.+..+.. ...-..+.|++|++++++..+ ..|+.|+.+.+..+.
T Consensus 333 eF~v~~~~l~~~~~~~~~~-~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPA-VPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecC-CCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCC
Confidence 4456667888887644332 233478899999999964221 226667766665433
No 59
>PRK13501 transcriptional activator RhaR; Provisional
Probab=75.22 E-value=3.9 Score=37.73 Aligned_cols=60 Identities=22% Similarity=0.216 Sum_probs=43.5
Q ss_pred CCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEe
Q 039926 62 GFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWI 127 (302)
Q Consensus 62 gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWi 127 (302)
-+++|-|.-+|+ .|+++|..+|. --|..-.+.+|++-|+.+|. .|+-... ....+..+++
T Consensus 30 ~~~~H~H~~~ei-~~i~~G~~~~~-i~~~~~~l~~g~~~~I~p~~--~H~~~~~--~~~~~~~~~~ 89 (290)
T PRK13501 30 TFVEHTHQFCEI-VIVWRGNGLHV-LNDHPYRITCGDVFYIQAAD--HHSYESV--HDLVLDNIIY 89 (290)
T ss_pred CCccccccceeE-EEEecCceEEE-ECCeeeeecCCeEEEEcCCC--ccccccc--CCeEEEEEEe
Confidence 467899987775 58889999987 34566789999999999874 6764432 2244555555
No 60
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=74.27 E-value=21 Score=26.74 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=34.8
Q ss_pred ECCCCEEEeecCCCCeEEEEEE----ecceEE---cC-CCCceecCCceEEEc-CCCeEEEEec
Q 039926 185 LKPGAHLRQPILRSWNAFVYVL----EGEGLF---GT-VKSSPVSAHHLLLLG-SGDGLEAWNK 239 (302)
Q Consensus 185 l~~g~~~~~~~~~~~~~~lyV~----~G~v~i---~~-~~~~~l~~~d~~~l~-~~~~l~l~a~ 239 (302)
++.|+++.+.+..++.+|+|++ +|+++. |. .....+.++....|- ++...+++..
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~~~~G~v~~L~Pn~~~~~~~v~ag~~~~iP~~~~~~~~~v~ 66 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYIDADGKVTLLFPNRYQPDNFVKAGQTYTIPDPGDRFSFTVD 66 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEECCCCCEEEEecCccccCceEcCCceEEcCCCCCceEEEEc
Confidence 4668888888877888888877 566554 21 011467778877776 3444555543
No 61
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=73.90 E-value=9.6 Score=29.71 Aligned_cols=50 Identities=22% Similarity=0.505 Sum_probs=31.1
Q ss_pred CeEEEEEEecceEEc--CCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEe
Q 039926 199 WNAFVYVLEGEGLFG--TVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLV 249 (302)
Q Consensus 199 ~~~~lyV~~G~v~i~--~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~ 249 (302)
.-.++||++|+.++. + +...+++||++.+..+..-.+.+.++++.+...+
T Consensus 23 ~~~i~~v~~G~~~~~~~~-~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i 74 (136)
T PF02311_consen 23 FYEIIYVLSGEGTLHIDG-QEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWI 74 (136)
T ss_dssp SEEEEEEEEE-EEEEETT-EEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE
T ss_pred CEEEEEEeCCEEEEEECC-EEEEEECCEEEEecCCccEEEecCCCCCEEEEEE
Confidence 457899999998773 3 2378999999999988877777653335554443
No 62
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=73.59 E-value=8.2 Score=33.25 Aligned_cols=80 Identities=13% Similarity=0.215 Sum_probs=45.1
Q ss_pred eEEEEEEecceEEc--CC---CCceecCCceEEEcCCCeEEEEecCCCCeEEEEeccc--------------ccCCceee
Q 039926 200 NAFVYVLEGEGLFG--TV---KSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGE--------------PIGEPVAQ 260 (302)
Q Consensus 200 ~~~lyV~~G~v~i~--~~---~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~--------------P~~epi~~ 260 (302)
.-++|+++|++.|. +. ....|.+||...+..+-.=+..+ .+++.+|++.-+ --++.+..
T Consensus 49 dE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r--~~~t~~LvIE~~r~~~~~d~~~wyc~~c~~~~~e 126 (159)
T TIGR03037 49 EEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQR--PAGSIGLVIERKRPQGELDGFQWFCPQCGHKLHR 126 (159)
T ss_pred ceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCccccc--CCCcEEEEEEeCCCCCCCcceEEECCCCCCeEEE
Confidence 46889999999882 21 13678999999997543322222 134444444321 11222222
Q ss_pred cCCCccCCH-HHHHHHHHHHhcc
Q 039926 261 LGPFVMNTQ-EEIDQTIDDFENY 282 (302)
Q Consensus 261 ~GpfVm~t~-~ei~~A~~dy~~g 282 (302)
. -|.+++- ..|..++.+|.+-
T Consensus 127 ~-~f~~~d~~~~~~~~~~~f~~~ 148 (159)
T TIGR03037 127 A-EVQLENIVTDLPPVFEHFYSN 148 (159)
T ss_pred E-EEEecChhhhhHHHHHHHhCC
Confidence 2 2433333 6788888888653
No 63
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=72.98 E-value=20 Score=32.62 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=38.5
Q ss_pred CCCCCCCCCC-ceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeee
Q 039926 61 AGFPDHPHRG-FETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMP 114 (302)
Q Consensus 61 ~gf~~HPHrg-~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~ 114 (302)
.-+++|.|.. +|++ |+++|.+...=. |..-.+++|++-|+.+| +.|+-..
T Consensus 34 ~~~~~H~H~~~~~l~-~~~~G~~~~~~~-~~~~~l~~g~~~ii~~~--~~H~~~~ 84 (287)
T TIGR02297 34 RNMPVHFHDRYYQLH-YLTEGSIALQLD-EHEYSEYAPCFFLTPPS--VPHGFVT 84 (287)
T ss_pred CCCCCcccccceeEE-EEeeCceEEEEC-CEEEEecCCeEEEeCCC--Ccccccc
Confidence 3478999985 6665 999999976432 45678999999999986 7787543
No 64
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=72.61 E-value=88 Score=30.74 Aligned_cols=57 Identities=9% Similarity=0.090 Sum_probs=36.5
Q ss_pred cEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEcCC-CCceecCCceEEEcCC-CeEEEE
Q 039926 178 TMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTV-KSSPVSAHHLLLLGSG-DGLEAW 237 (302)
Q Consensus 178 ~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~-~~~~l~~~d~~~l~~~-~~l~l~ 237 (302)
..+..++++.+ +..+ +...-..+.|++|++++... +...|..|+.+.+..+ ..++++
T Consensus 321 F~~~~~~l~~~-~~~~--~~~~~~Illv~~G~~~i~~~~~~~~l~~G~~~fipa~~~~~~~~ 379 (389)
T PRK15131 321 FAFSLHDLSDQ-PTTL--SQQSAAILFCVEGEAVLWKGEQQLTLKPGESAFIAANESPVTVS 379 (389)
T ss_pred cEEEEEEECCc-eEEe--cCCCcEEEEEEcceEEEEeCCeEEEECCCCEEEEeCCCccEEEe
Confidence 44555566543 3333 33444788999999999631 2256889999988743 346664
No 65
>PF05775 AfaD: Enterobacteria AfaD invasin protein; InterPro: IPR008394 This family consists of several AfaD and related proteins from Escherichia coli and Salmonella bacteria. The afa gene clusters encode an afimbrial adhesive sheath produced by E. coli. The adhesive sheath is composed of two proteins, AfaD and AfaE, which are independently exposed at the bacterial cell surface. AfaE is required for bacterial adhesion to HeLa cells and AfaD for the uptake of adherent bacteria into these cells [].; GO: 0009289 pilus; PDB: 3UIZ_F 3UIY_A 2AXW_A 2IXQ_A 2FVN_A.
Probab=71.84 E-value=52 Score=26.66 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=42.6
Q ss_pred CceeEEEEEeecccccCCCCCceeeecCcccceeecCCeEEEEEe-cCC------CCCcCCccc-cCCcEEEEEEECCCC
Q 039926 118 GTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIA-GEA------LGVKSPIYT-RTPTMYLDFTLKPGA 189 (302)
Q Consensus 118 ~~~~~lQiWinlP~~~k~~~P~y~~~~~~~ip~~~~~g~~~rvia-G~~------~g~~sp~~~-~~~~~~~di~l~~g~ 189 (302)
+.-.+||||.|.++. .+.+-+|.-.-.. ...-.+||-. |+. ++..+-+.. ...-..+|+..+.++
T Consensus 23 ~~htGF~Vw~na~~~-~g~p~~Yil~G~~------~~~h~LrVRlgg~gW~pd~~~g~~Giv~~~~e~~~~Fdvv~DGnQ 95 (111)
T PF05775_consen 23 EAHTGFHVWSNARQV-GGRPGRYILQGKR------NSQHELRVRLGGEGWQPDVREGGQGIVSHGGEEQAIFDVVADGNQ 95 (111)
T ss_dssp SSSSEEEEEESSEES-TTSTTEEEEEBCS------SSS-EEEEEEETTT-EE--STTSSSEEEETTSSEEEEEEEECSSS
T ss_pred CCceEEEEEeechhc-CCCccEEEEeCCC------CCCceEEEEeCCCCcccccccCceEEEEeccccccEEEEEEeCCE
Confidence 334579999997754 4566667644211 1123566633 331 121233332 344567788877766
Q ss_pred EEEeecCCCCeEEEEEEecce
Q 039926 190 HLRQPILRSWNAFVYVLEGEG 210 (302)
Q Consensus 190 ~~~~~~~~~~~~~lyV~~G~v 210 (302)
++ +++ .|++-+.|++
T Consensus 96 ~v----~~d--~Y~~sv~g~~ 110 (111)
T PF05775_consen 96 RV----PPD--EYVLSVSGEC 110 (111)
T ss_dssp E------SC--EEEEEEEEEE
T ss_pred ec----CCC--EEEEEEEEEe
Confidence 54 332 6777777764
No 66
>PLN00212 glutelin; Provisional
Probab=71.64 E-value=45 Score=33.88 Aligned_cols=76 Identities=11% Similarity=0.074 Sum_probs=51.2
Q ss_pred cCCcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEc--CCC-----CceecCCceEEEcCCCeEEEEecCCCCeEEE
Q 039926 175 RTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFG--TVK-----SSPVSAHHLLLLGSGDGLEAWNKFSKPLRFV 247 (302)
Q Consensus 175 ~~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~--~~~-----~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~l 247 (302)
...+.+..+.|.+|+-+.--....-+..+||++|++.|. +.+ ...|.+||++++..+-.+...|. +++.+++
T Consensus 345 ~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v 423 (493)
T PLN00212 345 LIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYI 423 (493)
T ss_pred ccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeec-CCceEEE
Confidence 355677778889988654222244568999999999885 211 14688999999987765555664 4566666
Q ss_pred Eecc
Q 039926 248 LVGG 251 (302)
Q Consensus 248 l~~g 251 (302)
-|..
T Consensus 424 ~F~t 427 (493)
T PLN00212 424 AFKT 427 (493)
T ss_pred Eeec
Confidence 5553
No 67
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=71.05 E-value=27 Score=31.39 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCCceE--EEEEce--eeEEeecCCCCee--eeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEE
Q 039926 58 TAPAGFPDHPHRGFET--VTYMLQ--GAVTHEDFEGHKG--TIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLW 126 (302)
Q Consensus 58 ~~~~gf~~HPHrg~Ei--vTyvl~--G~l~H~DS~Gn~~--~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiW 126 (302)
.++++--+|-|.+-+- +-|+++ |.|.=.|+-|+.. ..++||+=..--+.| |.-.|.+++++.++=+|
T Consensus 88 t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~g--H~t~N~Gd~pLvf~~v~ 160 (209)
T COG2140 88 TPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYG--HYTINTGDEPLVFLNVY 160 (209)
T ss_pred cCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcc--eEeecCCCCCEEEEEEE
Confidence 4555556799999999 999997 5666788888864 356688888876665 99999999999998888
No 68
>PRK13500 transcriptional activator RhaR; Provisional
Probab=70.60 E-value=7.4 Score=36.53 Aligned_cols=50 Identities=26% Similarity=0.228 Sum_probs=38.6
Q ss_pred CCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeee
Q 039926 61 AGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMP 114 (302)
Q Consensus 61 ~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~ 114 (302)
..|++|-|.-+|+ .|+++|...|.=. |..-.+.+|++-++.+| ..|+-..
T Consensus 59 ~~~~~H~H~~~el-~~v~~G~g~~~v~-~~~~~l~~Gdl~~I~~~--~~H~~~~ 108 (312)
T PRK13500 59 DVFAEHTHDFCEL-VIVWRGNGLHVLN-DRPYRITRGDLFYIHAD--DKHSYAS 108 (312)
T ss_pred CCCCccccceEEE-EEEEcCeEEEEEC-CEEEeecCCeEEEECCC--Ceecccc
Confidence 4689999986665 5999999998533 45578999999999765 7787543
No 69
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.87 E-value=89 Score=29.90 Aligned_cols=190 Identities=16% Similarity=0.206 Sum_probs=105.7
Q ss_pred CCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEee---cccccC
Q 039926 58 TAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWIN---LSSKYK 134 (302)
Q Consensus 58 ~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWin---lP~~~k 134 (302)
.|+.--|.|-|. ...+-+|++|.-...-=-|.+..+++||+-..-++ -+|.--|..+++| ||++ +|--+.
T Consensus 100 lPGEvApsHrHs-qsAlRFvveG~Ga~T~VdGer~~M~~GDfilTP~w--~wHdHgn~g~eP~----iWlDgLDiplv~~ 172 (351)
T COG3435 100 LPGEVAPSHRHN-QSALRFVVEGKGAYTVVDGERTPMEAGDFILTPAW--TWHDHGNEGTEPC----IWLDGLDIPLVNS 172 (351)
T ss_pred cCcccCCccccc-ccceEEEEeccceeEeecCceeeccCCCEEEccCc--eeccCCCCCCCce----EEEcccchHHHHh
Confidence 466567889886 88999999999888777899999999999877765 5777777667776 6764 444333
Q ss_pred CCCCceeeecCcccceeecCC-eEEE------EEecCCCCCcCCccccC----C-----cEEEE-EEECCCCEEEee---
Q 039926 135 MIEPRYQEVSSKDIAEAAKDG-IKVR------VIAGEALGVKSPIYTRT----P-----TMYLD-FTLKPGAHLRQP--- 194 (302)
Q Consensus 135 ~~~P~y~~~~~~~ip~~~~~g-~~~r------viaG~~~g~~sp~~~~~----~-----~~~~d-i~l~~g~~~~~~--- 194 (302)
+..-.|...+.+..|+...++ ...| =+.-+.....||+-.+. . +..+. -.--.|..+.|.
T Consensus 173 l~~gFfe~~~e~~q~v~~~~~d~~ar~~~~~rP~~~r~~~~~SPlf~Y~w~~t~eAL~~la~~e~~dp~dG~~~ryvNP~ 252 (351)
T COG3435 173 LGAGFFEEHPEEQQPVTRPEGDSLARYGPGMRPLRHRWGKPYSPLFNYAWDRTREALERLARLEEPDPFDGYKMRYVNPV 252 (351)
T ss_pred hcccccccCchhcCcccCCCCCchhhcCCCccccccCCCCCCCcccccccccHHHHHHHHHhccCCCCCCcceEEEecCC
Confidence 344444444444444443222 2233 11111101124443210 0 00000 000012222221
Q ss_pred ---------------cCCCC--------eEEE-EEEecceEE--cCCCCceecCCceEEEcCCCeEEEEecCCCCeEEEE
Q 039926 195 ---------------ILRSW--------NAFV-YVLEGEGLF--GTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVL 248 (302)
Q Consensus 195 ---------------~~~~~--------~~~l-yV~~G~v~i--~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll 248 (302)
||+|+ ...+ .|.+|+.++ +| .....+++|..++..=...++.+. .++|-+.-
T Consensus 253 TGg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~Ig~-~rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFs 330 (351)
T COG3435 253 TGGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTIIGG-ERFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFS 330 (351)
T ss_pred CCCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEECC-EEeeccCCCEEEccCcceeecccC-CcceEEEe
Confidence 23221 1244 478888654 55 224567999988875556777775 35776666
Q ss_pred ecccccCC
Q 039926 249 VGGEPIGE 256 (302)
Q Consensus 249 ~~g~P~~e 256 (302)
|+-.|+-|
T Consensus 331 fsD~PV~e 338 (351)
T COG3435 331 FSDRPVME 338 (351)
T ss_pred cCCcHHHH
Confidence 77677644
No 70
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=68.16 E-value=57 Score=29.87 Aligned_cols=41 Identities=17% Similarity=0.358 Sum_probs=35.0
Q ss_pred CCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCe
Q 039926 67 PHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGI 108 (302)
Q Consensus 67 PHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI 108 (302)
-|-+.+=+.||++|+++-... |..-.++|||+-++..|.=+
T Consensus 171 wtl~~dEi~YVLEGe~~l~Id-G~t~~l~pGDvlfIPkGs~~ 211 (233)
T PRK15457 171 WTLNYDEIDMVLEGELHVRHE-GETMIAKAGDVMFIPKGSSI 211 (233)
T ss_pred eeccceEEEEEEEeEEEEEEC-CEEEEeCCCcEEEECCCCeE
Confidence 555667788999999999885 88899999999999988654
No 71
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=67.41 E-value=41 Score=27.51 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=31.8
Q ss_pred CCCeEEEEEEecceEEc-CCCCceecCCceEEEcCCCeEEEEec
Q 039926 197 RSWNAFVYVLEGEGLFG-TVKSSPVSAHHLLLLGSGDGLEAWNK 239 (302)
Q Consensus 197 ~~~~~~lyV~~G~v~i~-~~~~~~l~~~d~~~l~~~~~l~l~a~ 239 (302)
.++...+++++|.+.+. +.....+.+|+++.++.+...+++..
T Consensus 53 ~~~~~l~~~~~G~~~~~~~g~~~~~~pg~~~l~d~~~~~~~~~~ 96 (172)
T PF14525_consen 53 DDHYLLVLPLSGSARIEQGGREVELAPGDVVLLDPGQPYRLEFS 96 (172)
T ss_pred CCEEEEEEEccCCEEEEECCEEEEEcCCeEEEEcCCCCEEEEEC
Confidence 34557778889998874 21236789999999987777888764
No 72
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=65.77 E-value=29 Score=29.88 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCCCceEEEEEceeeEEe--ecCCCC--eeeeCCCceEEEeCCCCeEEEe
Q 039926 58 TAPAGFPDHPHRGFETVTYMLQGAVTH--EDFEGH--KGTIGPGDLQWMTAGRGIVHSE 112 (302)
Q Consensus 58 ~~~~gf~~HPHrg~EivTyvl~G~l~H--~DS~Gn--~~~i~~G~vQwmtAGsGI~HsE 112 (302)
.|+..+..|-|.. |-+=|+++|+|.= +|. |. .-.|++||+-...+| +.|+=
T Consensus 36 Gpn~R~d~H~~~t-dE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~g--vpHsP 90 (159)
T TIGR03037 36 GPNARTDFHDDPG-EEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPH--VPHSP 90 (159)
T ss_pred CCCCCcccccCCC-ceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCC--CCccc
Confidence 4555688898885 7788999999887 554 32 568999999999876 66763
No 73
>PRK13503 transcriptional activator RhaS; Provisional
Probab=61.51 E-value=12 Score=33.99 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=37.4
Q ss_pred CCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEe
Q 039926 61 AGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSE 112 (302)
Q Consensus 61 ~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE 112 (302)
..++.|-|..+| +.|+++|...+.-. |..-.+++|++-|+.+| ..|+-
T Consensus 26 ~~~~~H~H~~~e-i~~v~~G~~~~~i~-~~~~~l~~g~~~~i~~~--~~h~~ 73 (278)
T PRK13503 26 AAFPEHHHDFHE-IVIVEHGTGIHVFN-GQPYTLSGGTVCFVRDH--DRHLY 73 (278)
T ss_pred ccccccccCcee-EEEEecCceeeEec-CCcccccCCcEEEECCC--ccchh
Confidence 457889998887 56999999998644 23578999999999986 46753
No 74
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=61.12 E-value=27 Score=31.22 Aligned_cols=75 Identities=28% Similarity=0.300 Sum_probs=43.0
Q ss_pred CcCCCCceEEEeecCCCcccCCCCeEEeeccccCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeC
Q 039926 25 PQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTA 104 (302)
Q Consensus 25 ~~~~G~g~~v~r~~~~~~~~~~~Pf~~ld~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtA 104 (302)
....|.|.+++++.... |+=+-++-..+.++.-||.|-|.|+|.+ .+++|.+ -|-.| .+.+||+ |-+
T Consensus 108 ~~W~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~G~E~t-~vl~G~~--sde~G---~y~vgD~--~~~ 174 (216)
T COG3806 108 WRWLGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHVGIERT-AVLEGAF--SDENG---EYLVGDF--TLA 174 (216)
T ss_pred eeeecCCcceeecccCC-----CCCceeEEEEeccCcccccccccceEEE-EEEeecc--ccCCC---ccccCce--eec
Confidence 33445555555554322 1112223345678888999999999974 5667665 23333 5666664 334
Q ss_pred CCCeEEEe
Q 039926 105 GRGIVHSE 112 (302)
Q Consensus 105 GsGI~HsE 112 (302)
=-++.|+=
T Consensus 175 d~~v~H~p 182 (216)
T COG3806 175 DGTVQHSP 182 (216)
T ss_pred CCcccccc
Confidence 44566764
No 75
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=59.54 E-value=60 Score=29.90 Aligned_cols=68 Identities=9% Similarity=0.132 Sum_probs=48.7
Q ss_pred EEECCCCEEEeecCCCCeEEEEEEecceEEcCCC--------C-ceec--CCceEEEcCCCeEEEEecCCCCeEEEEecc
Q 039926 183 FTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVK--------S-SPVS--AHHLLLLGSGDGLEAWNKFSKPLRFVLVGG 251 (302)
Q Consensus 183 i~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~~--------~-~~l~--~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g 251 (302)
.+|++|++++.... ++..-|.+++|+++|.... . ..++ +-|.+.+..+...+++|. .++++-|+++
T Consensus 34 ~~L~~Ges~~~~~~-~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~--t~~~vAvC~A 110 (270)
T COG3718 34 LRLAAGESATEETG-DRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTAT--TDLEVAVCSA 110 (270)
T ss_pred EEccCCCcccccCC-CceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEee--cceEEEEEeC
Confidence 47899999886653 5567788899999985211 0 1222 448888888889999995 5788888875
Q ss_pred cc
Q 039926 252 EP 253 (302)
Q Consensus 252 ~P 253 (302)
.-
T Consensus 111 P~ 112 (270)
T COG3718 111 PG 112 (270)
T ss_pred CC
Confidence 43
No 76
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=59.03 E-value=40 Score=24.80 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=38.9
Q ss_pred CeEEEEEE--ecceEEcCCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEecccccCC
Q 039926 199 WNAFVYVL--EGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGE 256 (302)
Q Consensus 199 ~~~~lyV~--~G~v~i~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~P~~e 256 (302)
..+|+-|. +|+.... ..+++|+...+...+.++|... +..+=-|-+.|+|+.-
T Consensus 7 ~~sWv~V~d~dG~~~~~----~~l~~G~~~~~~~~~~~~i~iG-na~~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 7 GDSWVEVTDADGKVLFS----GTLKAGETKTFEGKEPFRIRIG-NAGAVEVTVNGKPVDL 61 (77)
T ss_pred CCeEEEEEeCCCcEeee----eeeCCCcEEEEeCCCCEEEEEe-CCCcEEEEECCEECCC
Confidence 45777777 6666665 4678999988877777888764 4566677888888843
No 77
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=58.64 E-value=1.5e+02 Score=28.28 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=31.2
Q ss_pred CeEEEEEEecceEEcCC-CCceecCCceEEEcCC-CeEEEEe
Q 039926 199 WNAFVYVLEGEGLFGTV-KSSPVSAHHLLLLGSG-DGLEAWN 238 (302)
Q Consensus 199 ~~~~lyV~~G~v~i~~~-~~~~l~~~d~~~l~~~-~~l~l~a 238 (302)
.-..++|++|++++... +...|+.|+.+.+... ..++|++
T Consensus 260 ~~~il~v~eG~~~l~~~~~~~~l~~G~s~~ipa~~~~~~i~g 301 (312)
T COG1482 260 SFSILLVLEGEGTLIGGGQTLKLKKGESFFIPANDGPYTIEG 301 (312)
T ss_pred CcEEEEEEcCeEEEecCCEEEEEcCCcEEEEEcCCCcEEEEe
Confidence 45789999999999652 2257889999999844 6788886
No 78
>PRK13502 transcriptional activator RhaR; Provisional
Probab=56.33 E-value=22 Score=32.43 Aligned_cols=49 Identities=27% Similarity=0.323 Sum_probs=39.5
Q ss_pred CCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeee
Q 039926 62 GFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMP 114 (302)
Q Consensus 62 gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~ 114 (302)
.+++|.|. +=-+.|+++|...+.- -|..-.++||++-|+.+| ..|+...
T Consensus 30 ~~~~H~h~-~~~l~~v~~G~~~~~i-~~~~~~l~~g~l~li~~~--~~H~~~~ 78 (282)
T PRK13502 30 VFAEHTHE-FCELVMVWRGNGLHVL-NERPYRITRGDLFYIRAE--DKHSYTS 78 (282)
T ss_pred CCCccccc-eEEEEEEecCcEEEEE-CCEEEeecCCcEEEECCC--Ccccccc
Confidence 47889997 5556799999999874 466689999999999877 6887654
No 79
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=55.70 E-value=1.5e+02 Score=26.24 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=46.8
Q ss_pred CCcEEEEEEECCCCEEE-eecCC-------CCeEEEEEEecceEE--cCCC----CceecCCceEEEcCCCeEEEEecCC
Q 039926 176 TPTMYLDFTLKPGAHLR-QPILR-------SWNAFVYVLEGEGLF--GTVK----SSPVSAHHLLLLGSGDGLEAWNKFS 241 (302)
Q Consensus 176 ~~~~~~di~l~~g~~~~-~~~~~-------~~~~~lyV~~G~v~i--~~~~----~~~l~~~d~~~l~~~~~l~l~a~~~ 241 (302)
..+.+-...|.||.... +.... ++.=+.||++|+..+ ++.+ ...+.+||.+.+..+..=.+.+.++
T Consensus 66 ~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~ 145 (191)
T PRK04190 66 GDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGD 145 (191)
T ss_pred CceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCC
Confidence 35666667888888421 11111 223577899999766 3322 2578999999998665434555556
Q ss_pred CCeEEEEecc
Q 039926 242 KPLRFVLVGG 251 (302)
Q Consensus 242 ~~a~~ll~~g 251 (302)
+++++|.+.-
T Consensus 146 epl~fl~v~p 155 (191)
T PRK04190 146 EPLVFLACYP 155 (191)
T ss_pred CCEEEEEEEc
Confidence 6777776543
No 80
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=53.40 E-value=22 Score=29.46 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=55.3
Q ss_pred CCceEEEeecCCCcccCCCCeEEeeccccCCCCCCCCCCCCCceEEEEEceeeEEeecC-CCCeeeeCCCceEEEeCCCC
Q 039926 29 GMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDF-EGHKGTIGPGDLQWMTAGRG 107 (302)
Q Consensus 29 G~g~~v~r~~~~~~~~~~~Pf~~ld~~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS-~Gn~~~i~~G~vQwmtAGsG 107 (302)
++++.-+|++=..+-.+|+ +.+-.+.++.-..+|=-.-+|.| |+++|+-+=+|- .|..-.|+||-+..+..
T Consensus 18 ~~~w~SrRlll~~DgmGFS----~h~T~i~aGtet~~~YknHlEAv-yci~G~Gev~~~~~G~~~~i~pGt~YaLd~--- 89 (126)
T PF06339_consen 18 AENWESRRLLLKDDGMGFS----FHETTIYAGTETHIHYKNHLEAV-YCIEGEGEVEDLDTGEVHPIKPGTMYALDK--- 89 (126)
T ss_pred cCCceEEEEEEccCCCCEE----EEEEEEeCCCeeEEEecCceEEE-EEEeceEEEEEccCCcEEEcCCCeEEecCC---
Confidence 3467777777555433333 44445566656666666668887 777766666665 57788899998877764
Q ss_pred eEEEeeeC-CCCceeEEEEE
Q 039926 108 IVHSEMPA-AQGTQKGLQLW 126 (302)
Q Consensus 108 I~HsE~~~-~~~~~~~lQiW 126 (302)
|.+.-. ....++++=.+
T Consensus 90 --hD~H~lra~~dm~~vCVF 107 (126)
T PF06339_consen 90 --HDRHYLRAKTDMRLVCVF 107 (126)
T ss_pred --CccEEEEecCCEEEEEEc
Confidence 444322 13467776665
No 81
>PHA02984 hypothetical protein; Provisional
Probab=52.89 E-value=51 Score=30.84 Aligned_cols=84 Identities=12% Similarity=0.157 Sum_probs=60.4
Q ss_pred ecCCCCeEEEEEEecceEEcCC---C--CceecCCceEEEcCCCeEEEEecCCCCeEEEEecccccCCceeecCCCccCC
Q 039926 194 PILRSWNAFVYVLEGEGLFGTV---K--SSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGEPVAQLGPFVMNT 268 (302)
Q Consensus 194 ~~~~~~~~~lyV~~G~v~i~~~---~--~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~P~~epi~~~GpfVm~t 268 (302)
.+......|+.++.|+..|+-. . ...+.+|++..+.-...=.+.+. +.+.+++++--+ .+-|++.++.-|+..
T Consensus 88 ~~esnEy~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L~Vi~y~-v~~pfihykNvV~S~ 165 (286)
T PHA02984 88 TLESNEYMFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHLAVITYT-SNCPFIHYKNIVFSE 165 (286)
T ss_pred EeeeccEEEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeC-CCceEEEEEEEE-ecceEEEeccEEEcc
Confidence 3445567899999999999631 1 14678999988874433333332 468998888754 569999999999998
Q ss_pred HHHHHHHHHHH
Q 039926 269 QEEIDQTIDDF 279 (302)
Q Consensus 269 ~~ei~~A~~dy 279 (302)
.+-|-.+|--|
T Consensus 166 ds~vy~~FsGy 176 (286)
T PHA02984 166 DSFVYNIFSGY 176 (286)
T ss_pred chhhhhhhcCC
Confidence 88887776544
No 82
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=52.38 E-value=30 Score=30.35 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=43.9
Q ss_pred eEEEEEEecceEEc----CC-CCceecCCceEEEcCCCeEEEEecCCCCeEEEEecc--------------cccCCceee
Q 039926 200 NAFVYVLEGEGLFG----TV-KSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGG--------------EPIGEPVAQ 260 (302)
Q Consensus 200 ~~~lyV~~G~v~i~----~~-~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g--------------~P~~epi~~ 260 (302)
.-|+|+++|++.|. |. ....|.+||+..+..+-.=+..+ .+++..|++.- +--++.+..
T Consensus 55 dE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r--~~~tv~LviE~~r~~~~~d~~~wyc~~c~~~~~e 132 (177)
T PRK13264 55 EEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQR--EAGSIGLVIERKRPEGELDGFQWYCDECNHKVHE 132 (177)
T ss_pred ceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCcc--CCCeEEEEEEeCCCCCCccceEEECCCCCCeEEE
Confidence 45789999997763 21 13678999999887442222222 13444444421 112222222
Q ss_pred cCCCccCCH-HHHHHHHHHHhcc
Q 039926 261 LGPFVMNTQ-EEIDQTIDDFENY 282 (302)
Q Consensus 261 ~GpfVm~t~-~ei~~A~~dy~~g 282 (302)
=-|.+++- ..|..++.+|.+-
T Consensus 133 -~~f~~~d~~~~~~~~~~~f~~~ 154 (177)
T PRK13264 133 -VEVQLTDIETDLPPVFAAFYAS 154 (177)
T ss_pred -EEEEecChhhhhHHHHHHHhcC
Confidence 22444443 7788888888654
No 83
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=49.59 E-value=43 Score=29.39 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCCceEEEEEceeeEE--eecCCC--CeeeeCCCceEEEeCCCCeEEEe
Q 039926 58 TAPAGFPDHPHRGFETVTYMLQGAVT--HEDFEG--HKGTIGPGDLQWMTAGRGIVHSE 112 (302)
Q Consensus 58 ~~~~gf~~HPHrg~EivTyvl~G~l~--H~DS~G--n~~~i~~G~vQwmtAGsGI~HsE 112 (302)
.|+..+..|-|.+ |-+-|+++|++. -+| -| ..-.|++||+-..-+| +.|+=
T Consensus 42 Gpn~r~d~H~~~t-dE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~g--vpHsP 96 (177)
T PRK13264 42 GPNARTDFHYDPG-EEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPH--VPHSP 96 (177)
T ss_pred cCCcccccccCCC-ceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCC--CCcCC
Confidence 3444688899887 667799999964 456 23 3567999999998876 66763
No 84
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=49.27 E-value=1.2e+02 Score=28.61 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=40.4
Q ss_pred CCCeEEEEEEecceEE--cCCCCceecCCceEEEcCCCe-EEEEec-CCCCeEEEEeccccc
Q 039926 197 RSWNAFVYVLEGEGLF--GTVKSSPVSAHHLLLLGSGDG-LEAWNK-FSKPLRFVLVGGEPI 254 (302)
Q Consensus 197 ~~~~~~lyV~~G~v~i--~~~~~~~l~~~d~~~l~~~~~-l~l~a~-~~~~a~~ll~~g~P~ 254 (302)
..+..-|..+.|+++| +|. ...|...|++.+..|.. +++.+. +..+|+|.++++.-.
T Consensus 72 ~rrE~giV~lgG~~~V~vdG~-~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAPA~ 132 (276)
T PRK00924 72 ERRELGIINIGGAGTVTVDGE-TYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAPAH 132 (276)
T ss_pred CCcEEEEEEccceEEEEECCE-EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccccC
Confidence 4566888889888777 442 24588899999987755 777532 134689999987643
No 85
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=49.02 E-value=27 Score=28.53 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=25.2
Q ss_pred CeEEEEEEecceEEcCC--CCceecCCceEEEcCC
Q 039926 199 WNAFVYVLEGEGLFGTV--KSSPVSAHHLLLLGSG 231 (302)
Q Consensus 199 ~~~~lyV~~G~v~i~~~--~~~~l~~~d~~~l~~~ 231 (302)
+.=|.|+|+|.+++-.. +...+++||++.|..|
T Consensus 63 ~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G 97 (116)
T COG3450 63 EDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAG 97 (116)
T ss_pred cceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCC
Confidence 46789999999999532 2256889999988865
No 86
>PF12852 Cupin_6: Cupin
Probab=47.71 E-value=64 Score=27.57 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=35.9
Q ss_pred CCCCEEEeecCCC-CeEEEEEEecceEEc--C-CCCceecCCceEEEcCCCeEEEE
Q 039926 186 KPGAHLRQPILRS-WNAFVYVLEGEGLFG--T-VKSSPVSAHHLLLLGSGDGLEAW 237 (302)
Q Consensus 186 ~~g~~~~~~~~~~-~~~~lyV~~G~v~i~--~-~~~~~l~~~d~~~l~~~~~l~l~ 237 (302)
+-+..|.+..+.. .-.|.+|.+|+..+. + .+...|.+||.+.+..+..-.+.
T Consensus 21 ~~~~~W~~~~~~~~~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~ 76 (186)
T PF12852_consen 21 ELCGPWGLRFPGSPGASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLS 76 (186)
T ss_pred EEeCCcEEeccCCCceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeC
Confidence 3355566666655 357888999998886 2 23478999999999866555443
No 87
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=47.56 E-value=1.4e+02 Score=24.52 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=32.2
Q ss_pred ECCCCEEEeecCCCCeEEEEEEecceEEc---CCC--CceecCCc-eEEEcCCCeEEEEecCCCCeEEEEecccccCC
Q 039926 185 LKPGAHLRQPILRSWNAFVYVLEGEGLFG---TVK--SSPVSAHH-LLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGE 256 (302)
Q Consensus 185 l~~g~~~~~~~~~~~~~~lyV~~G~v~i~---~~~--~~~l~~~d-~~~l~~~~~l~l~a~~~~~a~~ll~~g~P~~e 256 (302)
.++|..--.-......-+++|++|+++|. +.+ ...|...+ .+.+..+---.+++.+ ++|-+|+++.++.++
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s-~~svlLv~as~~yd~ 116 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFS-EDSVLLVLASEPYDE 116 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE----TT-EEEEEESS---G
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccC-CCcEEEEEcCCCCCh
Confidence 45555333333334457899999999984 211 12344443 4444455555666654 579999999998865
No 88
>PLN00212 glutelin; Provisional
Probab=46.86 E-value=88 Score=31.83 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=44.7
Q ss_pred cCCCCCCCCCCCCCceEEEEEcee--eEEeecCCCCe---eeeCCCceEEEeCCCCeEEEee
Q 039926 57 VTAPAGFPDHPHRGFETVTYMLQG--AVTHEDFEGHK---GTIGPGDLQWMTAGRGIVHSEM 113 (302)
Q Consensus 57 ~~~~~gf~~HPHrg~EivTyvl~G--~l~H~DS~Gn~---~~i~~G~vQwmtAGsGI~HsE~ 113 (302)
+.+++-++||-|.+---|.||++| .+.--|+.|+. +.|++|||-++-+|. .|...
T Consensus 355 L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~--~v~~~ 414 (493)
T PLN00212 355 LYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHY--AVLKK 414 (493)
T ss_pred EcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCC--eEEEe
Confidence 467777999999999999999985 55667888886 569999999999886 56543
No 89
>PRK11396 hypothetical protein; Provisional
Probab=42.92 E-value=52 Score=29.21 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=35.1
Q ss_pred cCCCCeEEEEEEecceEEcCCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEec
Q 039926 195 ILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVG 250 (302)
Q Consensus 195 ~~~~~~~~lyV~~G~v~i~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~ 250 (302)
++.+....+||+.|+-.+++ ..+.++|.+....+.. ++.-. +.++.+|++.
T Consensus 128 ~~~~~~gvv~vl~G~w~~~~---~~l~~gqG~~w~~~~~-~~~pl-~~~a~ll~~~ 178 (191)
T PRK11396 128 TFGSRGGVVFVINGAWQLGD---KLLTTDQGACWFDGRH-TLRLL-QPQGKLLFSE 178 (191)
T ss_pred cCcCcccEEEEEeceeccCC---EEEecCCCceEecCCC-cEEEc-cCCceEEEEE
Confidence 45566678999999999887 8899999988864432 22222 2467776654
No 90
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=42.36 E-value=1.5e+02 Score=29.13 Aligned_cols=147 Identities=17% Similarity=0.268 Sum_probs=86.7
Q ss_pred cCCCCeEEeeccccCCCCCC---CCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEeeeCC----
Q 039926 44 RYFDPFLVLDEFSVTAPAGF---PDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAA---- 116 (302)
Q Consensus 44 ~~~~Pf~~ld~~~~~~~~gf---~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE~~~~---- 116 (302)
.-|.|| +||+.++.|+... .--||+ .|..-.|..|.|-.-++-..+.+.
T Consensus 240 Gvfs~~-FlN~~~L~PGEA~yL~AnepHA-----------------------YlsGdcvECMA~SDNvIRAGlTPK~~Dv 295 (411)
T KOG2757|consen 240 GVFSPF-FLNYVRLNPGEAIYLEANEPHA-----------------------YLSGDCVECMACSDNVIRAGLTPKYIDV 295 (411)
T ss_pred eeeeHh-hhhheecCCCceeeecCCCcce-----------------------eecCceeEEecccCceeeccCCCccccH
Confidence 345544 5799888876431 233443 566666788888877777766542
Q ss_pred CCceeEEEEEeecccccCCCCCceeeecCcccceeecCCeEEEEEecCCCCCcCCccccCCcEEEEEEECCCCEEEeecC
Q 039926 117 QGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPIL 196 (302)
Q Consensus 117 ~~~~~~lQiWinlP~~~k~~~P~y~~~~~~~ip~~~~~g~~~rviaG~~~g~~sp~~~~~~~~~~di~l~~g~~~~~~~~ 196 (302)
+..+++|- .+ +.++ .+..+|....++ .+.++..+ -.+.++..+.+..|++..++.-
T Consensus 296 ~tL~smL~--------Y~---~~~~--~p~~~~~~~~~~-~~~~Y~Pp----------i~eF~v~~~~v~~g~~~~~~~~ 351 (411)
T KOG2757|consen 296 DTLCSMLT--------YK---LTEQ--QPKLFPRSRLDG-YVLLYDPP----------IEEFAVLETKVPTGESYKFPGV 351 (411)
T ss_pred HHHHhHhc--------cc---cccc--ccccCCccCCCC-ceeEeCCC----------CcceeEEEeecCCCceEEeecC
Confidence 11122210 01 1111 112233322232 34444332 2356788889999988776543
Q ss_pred CCCeEEEEEEecceEEcCC--CCceecCCceEEEcCCCeEEEEec
Q 039926 197 RSWNAFVYVLEGEGLFGTV--KSSPVSAHHLLLLGSGDGLEAWNK 239 (302)
Q Consensus 197 ~~~~~~lyV~~G~v~i~~~--~~~~l~~~d~~~l~~~~~l~l~a~ 239 (302)
.+ -..+.|++|+.++... +...++.|+.+.+.....++|++.
T Consensus 352 ~~-~SIllv~~G~g~l~~~t~~~~~v~rG~V~fI~a~~~i~~~~~ 395 (411)
T KOG2757|consen 352 DG-PSILLVLKGSGILKTDTDSKILVNRGDVLFIPANHPIHLSSS 395 (411)
T ss_pred CC-ceEEEEEecceEEecCCCCceeeccCcEEEEcCCCCceeecc
Confidence 33 4678899999999753 236788999999986666788774
No 91
>PF15220 HILPDA: Hypoxia-inducible lipid droplet-associated
Probab=38.13 E-value=22 Score=25.05 Aligned_cols=15 Identities=53% Similarity=1.179 Sum_probs=12.8
Q ss_pred cCCCCCCCCCCCCCc
Q 039926 57 VTAPAGFPDHPHRGF 71 (302)
Q Consensus 57 ~~~~~gf~~HPHrg~ 71 (302)
-.+++|.|.||-||+
T Consensus 49 te~pk~lpdhpsrgv 63 (63)
T PF15220_consen 49 TEPPKGLPDHPSRGV 63 (63)
T ss_pred CCCCCCCCCCCcCCC
Confidence 467889999999986
No 92
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=36.98 E-value=33 Score=22.86 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHhcccCCCC
Q 039926 268 TQEEIDQTIDDFENYVNGFE 287 (302)
Q Consensus 268 t~~ei~~A~~dy~~g~~g~~ 287 (302)
|.+.|++|+.++++|++.+-
T Consensus 1 tee~l~~Ai~~v~~g~~S~r 20 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIR 20 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HH
T ss_pred CHHHHHHHHHHHHhCCCCHH
Confidence 57899999999999976543
No 93
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=34.41 E-value=95 Score=26.72 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=33.4
Q ss_pred CceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeEEEe
Q 039926 70 GFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSE 112 (302)
Q Consensus 70 g~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~HsE 112 (302)
+.+=+-|||+|++.-+-+ |..-+-+||||-+|--|+-|.-+-
T Consensus 117 ~yDe~d~VlEGrL~V~~~-g~tv~a~aGDvifiPKgssIefst 158 (176)
T COG4766 117 NYDEIDYVLEGRLHVRID-GRTVIAGAGDVIFIPKGSSIEFST 158 (176)
T ss_pred cccceeEEEeeeEEEEEc-CCeEecCCCcEEEecCCCeEEEec
Confidence 445567899999976655 555788999999999999987664
No 94
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=33.97 E-value=3.3e+02 Score=24.59 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=40.9
Q ss_pred EEECCCCEEEeecCCCCeE--EEEEEecceEE--cCCCC----ceecCCceEEEcCCCe-EEEEecCCCCeEEEEecccc
Q 039926 183 FTLKPGAHLRQPILRSWNA--FVYVLEGEGLF--GTVKS----SPVSAHHLLLLGSGDG-LEAWNKFSKPLRFVLVGGEP 253 (302)
Q Consensus 183 i~l~~g~~~~~~~~~~~~~--~lyV~~G~v~i--~~~~~----~~l~~~d~~~l~~~~~-l~l~a~~~~~a~~ll~~g~P 253 (302)
+.+.+|+.-+.-..++..- +.||++|+... ...++ ..+++||.+.+..+-. .++. .++++..|+.+.-..
T Consensus 85 ~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N-~Gd~pLvf~~v~~~~ 163 (209)
T COG2140 85 VFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTIN-TGDEPLVFLNVYPAD 163 (209)
T ss_pred EEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeec-CCCCCEEEEEEEeCC
Confidence 4667775544434333334 99999999765 22111 3567899988875432 3333 345566666655444
Q ss_pred c
Q 039926 254 I 254 (302)
Q Consensus 254 ~ 254 (302)
-
T Consensus 164 ~ 164 (209)
T COG2140 164 A 164 (209)
T ss_pred C
Confidence 4
No 95
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=33.01 E-value=28 Score=27.27 Aligned_cols=50 Identities=24% Similarity=0.344 Sum_probs=30.9
Q ss_pred cCCCCCCCCCCCCCceEEEEEceeeEEeecCCCCeeeeCCCceEEEeCCCCeE
Q 039926 57 VTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIV 109 (302)
Q Consensus 57 ~~~~~gf~~HPHrg~EivTyvl~G~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~ 109 (302)
+.++.-|...--.+.+..-|+++|.+.=.+.. ..+.+|++-++..|..|.
T Consensus 6 l~~g~~~~~~~~~~~~~~iyv~~G~~~v~~~~---~~~~~~~~~~l~~g~~i~ 55 (104)
T PF05726_consen 6 LEPGASFTLPLPPGHNAFIYVLEGSVEVGGEE---DPLEAGQLVVLEDGDEIE 55 (104)
T ss_dssp E-TT-EEEEEEETT-EEEEEEEESEEEETTTT---EEEETTEEEEE-SECEEE
T ss_pred ECCCCEEEeecCCCCEEEEEEEECcEEECCCc---ceECCCcEEEECCCceEE
Confidence 34444443222467899999999998653332 578889888888665553
No 96
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=32.66 E-value=3.5e+02 Score=25.04 Aligned_cols=72 Identities=17% Similarity=0.073 Sum_probs=38.7
Q ss_pred CeEEEEEecCCCCCcCCccccCCcEEEEEEECCCCEEEeecCCC---CeEEEEEEecceEEcCCC--CceecCCceEEEc
Q 039926 155 GIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRS---WNAFVYVLEGEGLFGTVK--SSPVSAHHLLLLG 229 (302)
Q Consensus 155 g~~~rviaG~~~g~~sp~~~~~~~~~~di~l~~g~~~~~~~~~~---~~~~lyV~~G~v~i~~~~--~~~l~~~d~~~l~ 229 (302)
+-..++|.|.. +..-...+.+++.+|-+ .|++ ....+|||+|.+..++.+ ...|.+|....+.
T Consensus 21 ~~~~~~L~gd~--------~~~g~~~~~vkf~~g~~----~pph~H~~~~~~~Vi~G~~~~~~~~a~~~~l~~Gsy~~~P 88 (251)
T PF14499_consen 21 GPGAAVLWGDP--------TKDGPSGMRVKFPAGFS----SPPHIHNADYRGTVISGELHNGDPKAAAMWLPAGSYWFQP 88 (251)
T ss_dssp --EEEEEEEE----------TTS-EEEEEEE-TT-E----E--BEESS-EEEEEEESEEEETTEE-----E-TTEEEEE-
T ss_pred CcceeeeecCc--------ccCCcceEEEEcCCCcc----CCCcceeeeEEEEEEEeEEEcCCCcccceecCCCceEecc
Confidence 34677777753 12233566678887754 3333 237899999999998721 1238888888776
Q ss_pred CCCeEEEEec
Q 039926 230 SGDGLEAWNK 239 (302)
Q Consensus 230 ~~~~l~l~a~ 239 (302)
.| .-.+++.
T Consensus 89 aG-~~h~~~~ 97 (251)
T PF14499_consen 89 AG-EPHITAA 97 (251)
T ss_dssp TT--EEEETT
T ss_pred CC-Cceeeec
Confidence 66 4566653
No 97
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=28.95 E-value=2.9e+02 Score=23.71 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=46.5
Q ss_pred cCCCCCCCCCCCCCceEEEEEceeeEEee----cCCC-------CeeeeCCCceEEEeCCCCeEEEeeeCC-CCceeEEE
Q 039926 57 VTAPAGFPDHPHRGFETVTYMLQGAVTHE----DFEG-------HKGTIGPGDLQWMTAGRGIVHSEMPAA-QGTQKGLQ 124 (302)
Q Consensus 57 ~~~~~gf~~HPHrg~EivTyvl~G~l~H~----DS~G-------n~~~i~~G~vQwmtAGsGI~HsE~~~~-~~~~~~lQ 124 (302)
..|+..-+.|=|.|-.-+-.|++|+++.. +..+ ...++.++++-++.--.|| |.=.|.+ +++.--|.
T Consensus 82 W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i-H~v~n~s~~~~avSLH 160 (175)
T PF05995_consen 82 WPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGI-HRVENPSGDEPAVSLH 160 (175)
T ss_dssp E-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBE-EEEEES-SSS-EEEEE
T ss_pred eCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCe-EEeccCCCCCCEEEEE
Confidence 46777889999999999999999999874 3331 1235678888888766664 8887765 66666677
Q ss_pred EEe
Q 039926 125 LWI 127 (302)
Q Consensus 125 iWi 127 (302)
+.-
T Consensus 161 vYs 163 (175)
T PF05995_consen 161 VYS 163 (175)
T ss_dssp EEE
T ss_pred EcC
Confidence 764
No 98
>PRK14113 urease accessory protein UreE; Provisional
Probab=28.15 E-value=2.3e+02 Score=24.11 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=21.5
Q ss_pred ceecCCceEEEcCCCeEEEEecCCCCeEEEEeccc
Q 039926 218 SPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGE 252 (302)
Q Consensus 218 ~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~ 252 (302)
..|..||.+..+++..|.|.+. +-.+|.+.++
T Consensus 49 ~~L~dGD~L~~ddg~~I~V~aa---~E~vl~i~~~ 80 (152)
T PRK14113 49 HPLLVGEILKTECGKIIQVKGK---AEDVATASAE 80 (152)
T ss_pred cccCCCCEEEcCCCCEEEEEEC---CccEEEEecC
Confidence 5577888888777777777774 3445555543
No 99
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=28.12 E-value=2.8e+02 Score=27.73 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=39.1
Q ss_pred CCCCeEEEEEEecceEEcCCC-CceecCCceEEEcCCCeEEEEecCCCCeEEEEec--ccccCCceeecCCCc
Q 039926 196 LRSWNAFVYVLEGEGLFGTVK-SSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVG--GEPIGEPVAQLGPFV 265 (302)
Q Consensus 196 ~~~~~~~lyV~~G~v~i~~~~-~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~--g~P~~epi~~~GpfV 265 (302)
.+.-.-.+|+-+|++.|...= ...+.+||.++|..|-..+++-. ++++.+++. |.++.=| ..||+=
T Consensus 143 NaDGD~Li~~q~G~l~l~Te~G~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~E~~~~~~~lP--e~G~iG 211 (424)
T PF04209_consen 143 NADGDELIFPQQGSLRLETEFGRLDVRPGDYVVIPRGTRFRVELP--GPARGYIIENFGSHFRLP--ELGPIG 211 (424)
T ss_dssp ESSEEEEEEEEES-EEEEETTEEEEE-TTEEEEE-TT--EEEE-S--SSEEEEEEEEES--EE------GGGT
T ss_pred cCCCCEEEEEEECCEEEEecCeeEEEcCCeEEEECCeeEEEEEeC--CCceEEEEEcCCCeEEec--CcCccc
Confidence 344457889999999996310 15788999999998877787764 589999987 5555444 445543
No 100
>PHA02283 hypothetical protein
Probab=27.19 E-value=3.2e+02 Score=24.14 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=47.0
Q ss_pred CCCeEEEEEEecceEEcCCCCceecCCceEEEcCCCeEEEEecCCCCeEEEEecccccCCceeecCCC-ccCCHHHHHHH
Q 039926 197 RSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGEPVAQLGPF-VMNTQEEIDQT 275 (302)
Q Consensus 197 ~~~~~~lyV~~G~v~i~~~~~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~P~~epi~~~Gpf-Vm~t~~ei~~A 275 (302)
.+.+.+||.. ..++.........+.++.++++.|-+...+ .-+|.+.||+..--. =||....+.||
T Consensus 46 kg~ey~IYPv----~~d~~~~~~~~~dsPIiyTdgnnIfFVvrT---------~~DPYn~~vi~te~~kg~dK~KQvLQA 112 (210)
T PHA02283 46 EGEELFLYPV----QTDGKGTLNVMKKSPIAYTDGDNIHFVVNT---------VVDPYNHSFIRTEDIKGLDKGKQLIQA 112 (210)
T ss_pred cccceEEEEE----EEcCCcceeeecCCCeEEeCCCeEEEEEec---------ccCccccchhhhhhhcccchhHHHHHH
Confidence 3455677743 122210123344555555666666655421 127878887754111 18999999999
Q ss_pred HHHHhcccCCCCC
Q 039926 276 IDDFENYVNGFEK 288 (302)
Q Consensus 276 ~~dy~~g~~g~~~ 288 (302)
|..|-..+|-|..
T Consensus 113 FlAF~eD~F~fg~ 125 (210)
T PHA02283 113 FLAFVEDRFKFGV 125 (210)
T ss_pred HHHHHHhhhhhee
Confidence 9999999876643
No 101
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=26.03 E-value=1.3e+02 Score=27.66 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=34.9
Q ss_pred ecceEEcCCCCceecCCceEEEcCC-CeEEEEecC-CCCeEEEEecccccC
Q 039926 207 EGEGLFGTVKSSPVSAHHLLLLGSG-DGLEAWNKF-SKPLRFVLVGGEPIG 255 (302)
Q Consensus 207 ~G~v~i~~~~~~~l~~~d~~~l~~~-~~l~l~a~~-~~~a~~ll~~g~P~~ 255 (302)
.|.+.++|. ...|..+|++.+.-| ..++|.... ..+|+|-+.++..+.
T Consensus 86 ~G~i~v~g~-~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~sapAH~ 135 (278)
T COG3717 86 PGTITVDGQ-EYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVSAPAHT 135 (278)
T ss_pred CceEEECCE-EEEeccccEEEEecCccceEEeccCCCCcceEEEeeccccc
Confidence 467777772 267999999999854 678888642 245789998876654
No 102
>PRK14112 urease accessory protein UreE; Provisional
Probab=25.51 E-value=3.2e+02 Score=23.17 Aligned_cols=32 Identities=3% Similarity=-0.053 Sum_probs=23.8
Q ss_pred ceecCCceEEEcCCCeEEEEecCCCCeEEEEeccc
Q 039926 218 SPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGE 252 (302)
Q Consensus 218 ~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~ 252 (302)
..|..||.+..+++.-|.|.+. +..++.+.++
T Consensus 55 ~~L~dGDvL~~ddg~~I~V~a~---~e~vl~I~~~ 86 (149)
T PRK14112 55 KKLMDGDILYKDDYKLVVIRLE---LSDVLIITAH 86 (149)
T ss_pred CccCCCCEEEeCCCCEEEEEeC---CCcEEEEeCC
Confidence 5678899998888877888874 4566666655
No 103
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=25.50 E-value=3.1e+02 Score=23.37 Aligned_cols=63 Identities=24% Similarity=0.285 Sum_probs=39.5
Q ss_pred CCCCCCCCceEEEEEceeeEEe--ecCCCCe--eeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEee
Q 039926 63 FPDHPHRGFETVTYMLQGAVTH--EDFEGHK--GTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWIN 128 (302)
Q Consensus 63 f~~HPHrg~EivTyvl~G~l~H--~DS~Gn~--~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWin 128 (302)
|..|-|.+.|+- |+++|+... ++.-+.- -.+++||+-.+-|| +.|-=.......+..+.++-+
T Consensus 85 ~~EH~H~deEvR-~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g--~~HrF~~~~~~~i~aiRlF~~ 151 (157)
T PF03079_consen 85 FEEHTHEDEEVR-YIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAG--TYHRFTLGESPYIKAIRLFKD 151 (157)
T ss_dssp CS-EEESS-EEE-EEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT----EEEEESTTSSEEEEEEESS
T ss_pred heeEecChheEE-EEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCC--CceeEEcCCCCcEEEEEeecC
Confidence 578999997776 999766544 5655553 36889998888776 566544444556777777654
No 104
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=24.78 E-value=4.6e+02 Score=24.50 Aligned_cols=63 Identities=11% Similarity=0.098 Sum_probs=38.7
Q ss_pred EEEEEEECCCCEEEeecCCCCeEEEEEEecceEEcC-CCCceecCCceEEEcCCC-eEEEEecCCCCeEEEE
Q 039926 179 MYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGT-VKSSPVSAHHLLLLGSGD-GLEAWNKFSKPLRFVL 248 (302)
Q Consensus 179 ~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~-~~~~~l~~~d~~~l~~~~-~l~l~a~~~~~a~~ll 248 (302)
.+..+++... .++.. .+.-..+.|++|+++|.. .+...|++|+.+.+..+. .++++. ++++|+
T Consensus 236 ~~~~~~~~~~--~~~~~-~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~ipa~~~~~~i~g----~~~~~~ 300 (302)
T TIGR00218 236 SVYKWDISGK--AEFIQ-QQSALILSVLEGSGRIKSGGKTLPLKKGESFFIPAHLGPFTIEG----ECEAIV 300 (302)
T ss_pred EEEEEEeCCc--eeecc-CCCcEEEEEEcceEEEEECCEEEEEecccEEEEccCCccEEEEe----eEEEEE
Confidence 4444455433 23222 234467889999999842 122568999999998553 577764 355554
No 105
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=24.58 E-value=36 Score=30.40 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=26.6
Q ss_pred cccCCCCCCCCCCCCCceEEEEEceeeEEee
Q 039926 55 FSVTAPAGFPDHPHRGFETVTYMLQGAVTHE 85 (302)
Q Consensus 55 ~~~~~~~gf~~HPHrg~EivTyvl~G~l~H~ 85 (302)
|.+.++.-+|.|=|-||-.++-||.|.+.-+
T Consensus 49 F~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~ 79 (200)
T PF07847_consen 49 FCLPPGAVIPLHDHPGMTVLSKVLYGSLHVK 79 (200)
T ss_pred EEeCCCCEeCCCCCCchHhhHhhEeeeEEEE
Confidence 4457778899999999999999999998653
No 106
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=24.17 E-value=1.2e+02 Score=29.45 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=16.6
Q ss_pred CCCCCCCCCCceEEEEEce
Q 039926 61 AGFPDHPHRGFETVTYMLQ 79 (302)
Q Consensus 61 ~gf~~HPHrg~EivTyvl~ 79 (302)
..++.-+|.++..+|++++
T Consensus 225 ~~~G~~~HtD~g~lTiL~Q 243 (358)
T PLN02254 225 RAMGLAPHTDSSLLTILYQ 243 (358)
T ss_pred cccCcCCccCCCcEEEEec
Confidence 4577889999999999986
No 107
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=23.54 E-value=1.3e+02 Score=26.10 Aligned_cols=67 Identities=21% Similarity=0.387 Sum_probs=44.7
Q ss_pred CCCCe--EEeeccccCCCCCCCCCCCCCceEEEEEcee-----------eEEeecCCCCeeeeCCCceEEEeCCCCeEEE
Q 039926 45 YFDPF--LVLDEFSVTAPAGFPDHPHRGFETVTYMLQG-----------AVTHEDFEGHKGTIGPGDLQWMTAGRGIVHS 111 (302)
Q Consensus 45 ~~~Pf--~~ld~~~~~~~~gf~~HPHrg~EivTyvl~G-----------~l~H~DS~Gn~~~i~~G~vQwmtAGsGI~Hs 111 (302)
+.||. +-+-+++++|+.-.|.|=|+=--.|-.+.-| +.-|-|+ ......||+|. ||+ |=+||
T Consensus 66 h~d~~gfltV~~~t~~PG~~~p~HnH~~wglVgil~G~E~n~~y~~~~~~~~~P~~--qdk~~apgeV~-lSp--gdihs 140 (191)
T COG5553 66 HADPQGFLTVYHITLSPGVQYPPHNHLMWGLVGILWGGETNFIYPLAGEEVDEPER--QDKFAAPGEVH-LSP--GDIHS 140 (191)
T ss_pred EEcccccEEEEEEEeCCCcccCCcccchheeeeeeecccccceecccCCCCCCcch--hhhhcCcceEe-eCC--CCeee
Confidence 34554 5566778899888999999866555544422 2233222 33478899999 888 67888
Q ss_pred eeeCC
Q 039926 112 EMPAA 116 (302)
Q Consensus 112 E~~~~ 116 (302)
-.|..
T Consensus 141 v~n~~ 145 (191)
T COG5553 141 VANTG 145 (191)
T ss_pred ecccC
Confidence 87764
No 108
>PRK13261 ureE urease accessory protein UreE; Provisional
Probab=23.46 E-value=3.7e+02 Score=22.74 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=20.7
Q ss_pred ceecCCceEEEcCCCeEEEEecCCCCeEEEEeccc
Q 039926 218 SPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGE 252 (302)
Q Consensus 218 ~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g~ 252 (302)
..|..||.+..+++..+.|.+. +.++|.+..+
T Consensus 54 ~~L~dGDvL~~d~~~~i~V~~~---~e~vl~i~~~ 85 (159)
T PRK13261 54 TVLRDGDVLFLDDGRVIVVRAA---PEDVLVVRPR 85 (159)
T ss_pred CccCCCCEEEeCCCCEEEEEEC---CCcEEEEECC
Confidence 4577778777777666777763 4556665543
No 109
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=23.42 E-value=3.3e+02 Score=24.48 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=20.5
Q ss_pred ceecCCceEEEcCCCeEEEEecCCCCeEEEEecc
Q 039926 218 SPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGG 251 (302)
Q Consensus 218 ~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g 251 (302)
..|..||.+..+++..|.|.+. +-.+|.+..
T Consensus 55 ~~L~dGDvL~~ddg~~IvV~aa---pE~Vl~I~~ 85 (206)
T PRK13263 55 TVLRDGDVLVAEDGALVRVAAA---PEAVLRVRA 85 (206)
T ss_pred CccCCCCEEEeCCCCEEEEEeC---CCcEEEEEC
Confidence 4567778887777777777763 345555554
No 110
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=23.41 E-value=3.1e+02 Score=23.32 Aligned_cols=71 Identities=20% Similarity=0.344 Sum_probs=0.0
Q ss_pred EEEEecceEE--cCCCC--ceecCCceEEEcCCCe-EEEEecCCCCeEEEEecccccCCceeecCCCccCCHHHHHHHHH
Q 039926 203 VYVLEGEGLF--GTVKS--SPVSAHHLLLLGSGDG-LEAWNKFSKPLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTID 277 (302)
Q Consensus 203 lyV~~G~v~i--~~~~~--~~l~~~d~~~l~~~~~-l~l~a~~~~~a~~ll~~g~P~~epi~~~GpfVm~t~~ei~~A~~ 277 (302)
|-|++|.+.+ +|.++ ..+.+||.++|..|-. -++++ .+.|.++.+=|=.+. .-+--.-..++++|.+
T Consensus 68 l~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~rl~s----S~DF~VvGaYp~G~q----~diqtg~~t~~aear~ 139 (163)
T COG4297 68 LGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCRLHS----SADFQVVGAYPPGQQ----ADIQTGAPTDLAEARA 139 (163)
T ss_pred EEEecceeEEEecCCCCceeeecCCCEEEEecCcccccccC----CCCeEEEcccCCccc----ccccCCCCccHHHHHH
Q ss_pred HHhc
Q 039926 278 DFEN 281 (302)
Q Consensus 278 dy~~ 281 (302)
+..+
T Consensus 140 ~I~~ 143 (163)
T COG4297 140 RIKS 143 (163)
T ss_pred HHHc
No 111
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=22.51 E-value=3.7e+02 Score=23.00 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=36.6
Q ss_pred EECCCCEEEeecCCCCeEEEEEEecceEEc--CCCCceecCCceE--------EEcCCCe--EEEEecCCCCeEEEEecc
Q 039926 184 TLKPGAHLRQPILRSWNAFVYVLEGEGLFG--TVKSSPVSAHHLL--------LLGSGDG--LEAWNKFSKPLRFVLVGG 251 (302)
Q Consensus 184 ~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~--~~~~~~l~~~d~~--------~l~~~~~--l~l~a~~~~~a~~ll~~g 251 (302)
.|++|+.+..+=...-...-.+++|.+.|. |.-=+.+.+.+.+ ....++. ++|+| .+++++|.---
T Consensus 32 ~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSPEW~s~~~s~~~~FQVTitA--~~~Cryl~W~R 109 (153)
T PF04831_consen 32 TLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLDSPEWESLRPSEDDKFQVTITA--EEDCRYLCWPR 109 (153)
T ss_pred EecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeecccccccChhhhccccCCCCeEEEEEEE--cCCcEEEEEEH
Confidence 556666555432211235667888888774 3100223333333 1122333 66777 57899987665
Q ss_pred ccc
Q 039926 252 EPI 254 (302)
Q Consensus 252 ~P~ 254 (302)
+.+
T Consensus 110 ~kL 112 (153)
T PF04831_consen 110 EKL 112 (153)
T ss_pred HHH
Confidence 555
No 112
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=22.41 E-value=1.9e+02 Score=20.41 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=25.6
Q ss_pred cEEEEEEECCCCEEEeecCCCC-eEEEEEEecc
Q 039926 178 TMYLDFTLKPGAHLRQPILRSW-NAFVYVLEGE 209 (302)
Q Consensus 178 ~~~~di~l~~g~~~~~~~~~~~-~~~lyV~~G~ 209 (302)
..++.+.+++|+++++.+.... +..+|++...
T Consensus 2 ~D~y~f~v~ag~~l~i~l~~~~~d~dl~l~~~~ 34 (70)
T PF04151_consen 2 VDYYSFTVPAGGTLTIDLSGGSGDADLYLYDSN 34 (70)
T ss_dssp EEEEEEEESTTEEEEEEECETTSSEEEEEEETT
T ss_pred cEEEEEEEcCCCEEEEEEcCCCCCeEEEEEcCC
Confidence 4577889999999999987655 6778888776
No 113
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=22.31 E-value=2e+02 Score=25.92 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=25.8
Q ss_pred eEEEEEEecceEE--cCCCCceecCCceEEEcCCCeE
Q 039926 200 NAFVYVLEGEGLF--GTVKSSPVSAHHLLLLGSGDGL 234 (302)
Q Consensus 200 ~~~lyV~~G~v~i--~~~~~~~l~~~d~~~l~~~~~l 234 (302)
.-++||++|++.+ ++ ....+.+||++.+..+..-
T Consensus 44 ~ei~~v~~G~~~~~i~~-~~~~l~~g~l~~i~p~~~H 79 (278)
T PRK10296 44 YEFTLVLTGRYYQEING-KRVLLERGDFVFIPLGSHH 79 (278)
T ss_pred EEEEEEEeceEEEEECC-EEEEECCCcEEEeCCCCcc
Confidence 4689999998765 55 2268999999999877643
No 114
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=21.85 E-value=2.2e+02 Score=25.51 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=18.9
Q ss_pred EEEECCCCEEEeecCCCCeEEEEEEecceEEc
Q 039926 182 DFTLKPGAHLRQPILRSWNAFVYVLEGEGLFG 213 (302)
Q Consensus 182 di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~ 213 (302)
.++|+||++++ +|++-...+..=.|.+.|+
T Consensus 154 ~lkL~PGesit--L~Pg~~HsFwae~g~vlvg 183 (225)
T COG3822 154 QLKLSPGESIT--LPPGLYHSFWAEEGGVLVG 183 (225)
T ss_pred eEEECCCCcEe--cCCCceeeeeecCCcEEEE
Confidence 47899999876 6666555555444444443
No 115
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=21.75 E-value=1.7e+02 Score=26.41 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=27.9
Q ss_pred eEEEEEEecceEE--cCCCCceecCCceEEEcCCCeEEEEe
Q 039926 200 NAFVYVLEGEGLF--GTVKSSPVSAHHLLLLGSGDGLEAWN 238 (302)
Q Consensus 200 ~~~lyV~~G~v~i--~~~~~~~l~~~d~~~l~~~~~l~l~a 238 (302)
--++|+.+|.+.+ ++ ....+++||++.+..+..-++..
T Consensus 45 ~~l~~~~~G~~~~~~~~-~~~~l~~g~~~ii~~~~~H~~~~ 84 (287)
T TIGR02297 45 YQLHYLTEGSIALQLDE-HEYSEYAPCFFLTPPSVPHGFVT 84 (287)
T ss_pred eeEEEEeeCceEEEECC-EEEEecCCeEEEeCCCCcccccc
Confidence 4688999999877 34 23678999999998776555544
No 116
>PRK13502 transcriptional activator RhaR; Provisional
Probab=21.52 E-value=2.4e+02 Score=25.43 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=28.2
Q ss_pred CeEEEEEEecceEE--cCCCCceecCCceEEEcCCCeEEEEe
Q 039926 199 WNAFVYVLEGEGLF--GTVKSSPVSAHHLLLLGSGDGLEAWN 238 (302)
Q Consensus 199 ~~~~lyV~~G~v~i--~~~~~~~l~~~d~~~l~~~~~l~l~a 238 (302)
+.-++||.+|++.+ ++ ....+.+||++.+..++.-.+..
T Consensus 38 ~~~l~~v~~G~~~~~i~~-~~~~l~~g~l~li~~~~~H~~~~ 78 (282)
T PRK13502 38 FCELVMVWRGNGLHVLNE-RPYRITRGDLFYIRAEDKHSYTS 78 (282)
T ss_pred eEEEEEEecCcEEEEECC-EEEeecCCcEEEECCCCcccccc
Confidence 45788999998766 44 23689999999998766544443
No 117
>PRK11507 ribosome-associated protein; Provisional
Probab=21.10 E-value=69 Score=23.78 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=22.1
Q ss_pred CCeEEEEEEecceEEcCC----CCceecCCceEEEc
Q 039926 198 SWNAFVYVLEGEGLFGTV----KSSPVSAHHLLLLG 229 (302)
Q Consensus 198 ~~~~~lyV~~G~v~i~~~----~~~~l~~~d~~~l~ 229 (302)
|-.+=.++.+|.+.|||. .+..|..||.+.+.
T Consensus 27 GG~AK~~I~eg~V~VNGeve~rRgkKl~~GD~V~~~ 62 (70)
T PRK11507 27 GAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 (70)
T ss_pred hHHHHHHHHcCceEECCEEecccCCCCCCCCEEEEC
Confidence 334445677888888873 23678888888874
No 118
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=20.05 E-value=3.9e+02 Score=27.14 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=29.8
Q ss_pred eEEcCCC-CceecCCceEEEc----CCCeEEEEecCCCCeEEEEecccc----cCCce-eecCCCcc
Q 039926 210 GLFGTVK-SSPVSAHHLLLLG----SGDGLEAWNKFSKPLRFVLVGGEP----IGEPV-AQLGPFVM 266 (302)
Q Consensus 210 v~i~~~~-~~~l~~~d~~~l~----~~~~l~l~a~~~~~a~~ll~~g~P----~~epi-~~~GpfVm 266 (302)
++|||.. .....++.-+.|. +|+.|+|+- +.++=+....| -...| +.+||+|+
T Consensus 457 i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~l----pm~~r~~~~~~~~~~~~~~vAv~rGPlV~ 519 (520)
T PF07944_consen 457 IRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRL----PMEVRLEPANPRVPDDPGRVAVMRGPLVY 519 (520)
T ss_pred EEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEe----cCeeEEEeCCCCCccCCCeEEEEeCchhc
Confidence 5566632 2334566667676 577888875 23344444411 12233 68999986
Done!