BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039928
(675 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 168/311 (54%), Gaps = 17/311 (5%)
Query: 85 PDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSS 144
P ++PR + P+ NG++ VR GG ++ R++I + V+ AR++NATLV+PE+ + +
Sbjct: 73 PSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFW 132
Query: 145 KGISSQFKSFAYLYNEEQFMAALAKDINIVKTLPKNLKGARRKKKIPSFRVS--YSASPY 202
S F +Y+ E F+ L D+ IV +P K + KKI +F++ A
Sbjct: 133 HDDSG----FQGIYDVEHFIETLKYDVKIVGKIPDVHKNGK-TKKIKAFQIRPPRDAPIE 187
Query: 203 FYLHHVLPVLIKHSVVELVVSDGGCLQASLPPHLEEYQRLRCRVAFHALRFRQEVQELAT 262
+YL L + +HS + L + P EYQRLRCRV +HALRF+ + +L+
Sbjct: 188 WYLTTALKAMREHSAIYLTPFSHRLAEEIDNP---EYQRLRCRVNYHALRFKPHIMKLSE 244
Query: 263 RILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLS 322
I+ +LR+ G F++ D LA+ GC ++F ++++ R K +L
Sbjct: 245 SIVDKLRSQGH-FMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYR----KENFADKRLI 299
Query: 323 VNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVD 382
N E R G CPL PEEVG++LRA + T IY++ GE+FGG++ + P +F + +
Sbjct: 300 YN--ERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDN 357
Query: 383 RTSLSTAWELT 393
+S+ + EL+
Sbjct: 358 HSSVDPSEELS 368
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 462 ELRTNAHKLLWEAIDYMVCVEADVFIPGFDRDGKGHPNFASLVMGHRLYQSASSKTYRPD 521
EL + L+ A+DYMVC+ +D+F+P +D G NFA+ ++GHRLY + T RPD
Sbjct: 366 ELSATSQGLIGSAVDYMVCLLSDIFMPTYD----GPSNFANNLLGHRLYYGFRT-TIRPD 420
Query: 522 RRKVVKLL 529
R+ + +
Sbjct: 421 RKALAPIF 428
>sp|O76612|BAT47_CAEEL BTB and MATH domain-containing protein 47 OS=Caenorhabditis elegans
GN=bath-47 PE=4 SV=3
Length = 706
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 272 GRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELRLN 331
GRP + G + EL QDV I + +V G+L+V +
Sbjct: 502 GRPLKSKTNGCFNIEKTKNSSQELGQDVEWSTI-------VYDYMVDGRLTVEAHVNITR 554
Query: 332 GTCPLMPEEVGIL-LRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVDRTSLSTA 389
TC P+ + A G SWD ++ V+G F + LI A F N++ + + + A
Sbjct: 555 VTCLDAPKFKKLRNFDATGNSWDVMLIVAGQRFFVLKEILISNSARFKNIISKINFTAA 613
>sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sapiens GN=ZFHX4 PE=1 SV=1
Length = 3567
Score = 36.2 bits (82), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 228 LQASLPPHLEEYQRLRCRVAFHALRFRQEVQELATRILRR--LRAP------GRPFIAFD 279
LQ SLPP L +YQ +C VAF L QE Q + + L +P P++ FD
Sbjct: 2437 LQNSLPPQLLQYQCDQCTVAFPTLELWQEHQHMHFLAAQNQFLHSPFLERPMDMPYMIFD 2496
Query: 280 PG 281
P
Sbjct: 2497 PN 2498
>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2
Length = 3573
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 228 LQASLPPHLEEYQRLRCRVAFHALRFRQEVQEL----------ATRILRRLRAPGRPFIA 277
LQ SLPP L +YQ +C VAF L QE Q + ++ L R P++
Sbjct: 2425 LQNSLPPQLLQYQCDQCTVAFPTLELWQEHQHMHFLAAQNQFIHSQFLERPM--DMPYMI 2482
Query: 278 FDPG 281
FDP
Sbjct: 2483 FDPN 2486
>sp|P40508|YIH7_YEAST Uncharacterized protein YIL077C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YIL077C PE=1 SV=1
Length = 320
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 446 WGWVAESDNEPESTVMELRTNAHKLLWEAIDYMVCVEADVFIPGFDRDGKGHPNFASLVM 505
W + DN S+ +R + E+ D V E+D+FI GF DG N +S
Sbjct: 247 WEKIRNGDNSSSSSWENIRNTSRDQSQES-DASVDHESDIFISGFSDDGNATDNSSSDDK 305
Query: 506 GHRLYQSA 513
RL QS
Sbjct: 306 YQRLLQSG 313
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,564,476
Number of Sequences: 539616
Number of extensions: 11265341
Number of successful extensions: 40346
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 39929
Number of HSP's gapped (non-prelim): 386
length of query: 675
length of database: 191,569,459
effective HSP length: 124
effective length of query: 551
effective length of database: 124,657,075
effective search space: 68686048325
effective search space used: 68686048325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)