Query 039928
Match_columns 675
No_of_seqs 202 out of 398
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 04:53:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.1 5.4E-10 1.9E-14 118.1 16.6 65 99-163 20-92 (408)
2 3zy2_A Putative GDP-fucose pro 98.3 2.7E-06 9.3E-11 90.2 11.3 170 99-294 6-230 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 77.9 4.3 0.00015 45.1 7.8 144 100-282 144-304 (526)
4 2hhc_A NODZ, nodulation fucosy 49.8 15 0.00053 37.1 4.8 40 100-139 3-42 (330)
5 3l32_A Phosphoprotein; antipar 36.1 17 0.00057 28.4 1.9 25 250-275 2-26 (45)
6 2hhc_A NODZ, nodulation fucosy 19.9 52 0.0018 33.2 2.7 36 248-284 145-180 (330)
7 4ayl_A BOGT-metal-independent 19.7 65 0.0022 32.9 3.3 75 456-534 67-149 (246)
8 1l2m_A REP protein; A+B fold, 17.6 1.1E+02 0.0038 27.9 4.0 25 333-358 17-41 (118)
9 1p3q_Q VPS9P, vacuolar protein 16.0 37 0.0013 27.3 0.4 13 368-380 14-26 (54)
10 2eqr_A N-COR1, N-COR, nuclear 15.6 77 0.0026 25.1 2.2 18 331-348 10-27 (61)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.15 E-value=5.4e-10 Score=118.13 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCCcEEEEEEc-C-chhhhHHHHHHHHHHHhHhcce----EeccccCcccccCCCC--CCCCCCCcccChHHH
Q 039928 99 RANGFIFVRIQ-G-GFHEIRNSISDVVVVARLLNAT----LVIPEIQSTTSSKGIS--SQFKSFAYLYNEEQF 163 (675)
Q Consensus 99 ~snGYL~V~an-G-GLNQqR~~IcDAVaVARiLNAT----LVIP~Ld~ss~~~~d~--sd~S~F~DIFDvdhF 163 (675)
..++||+-..| | |+|.||...-.|.++|+.||-| ||||-...-.-|.... +..-.|++.||++++
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L 92 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL 92 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH
Confidence 56899999875 4 8999999999999999999999 9999664211122221 111249999999864
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.29 E-value=2.7e-06 Score=90.20 Aligned_cols=170 Identities=19% Similarity=0.268 Sum_probs=99.4
Q ss_pred CCCcEEEE-EEcCchhhhHHHHHHHHHHHhHhcceEeccccCcccccCCCCCCCCCCCcccChHHHHHHccCCcEEeccC
Q 039928 99 RANGFIFV-RIQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEQFMAALAKDINIVKTL 177 (675)
Q Consensus 99 ~snGYL~V-~anGGLNQqR~~IcDAVaVARiLNATLVIP~Ld~ss~~~~d~sd~S~F~DIFDvdhFI~sLk~DVrIVk~L 177 (675)
.+||||+- -|-|-+-+|-...--+.+.|+.||-|||||-+-.-.. +. +..-.|++.|+++. |+..-|||.-
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~--~~-~~~vpf~~yF~v~~----l~~yhrvi~m- 77 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH--PE-TKMIPFEFLFQVGT----VAKYTRVVTM- 77 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS--SS-CEEECHHHHBCHHH----HTTTSCEECH-
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC--Cc-ccccchhheeecch----hhhhceeeeH-
Confidence 46999988 6999999999999999999999999999987653210 11 11123888888765 3334444432
Q ss_pred chhhhhh------------------------------c--ccCCCC-----ccccc--c---CCC----hhhHhhhcccc
Q 039928 178 PKNLKGA------------------------------R--RKKKIP-----SFRVS--Y---SAS----PYFYLHHVLPV 211 (675)
Q Consensus 178 P~~l~~~------------------------------~--~~~~~~-----~~rvp--~---~ss----~~yY~~~VLP~ 211 (675)
++++.. . +..+.. .+.|. . ... .+|-.......
T Consensus 78 -e~Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~ 156 (362)
T 3zy2_A 78 -QEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKK 156 (362)
T ss_dssp -HHHHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------C
T ss_pred -HHHHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHH
Confidence 111100 0 000000 00000 0 000 01100001111
Q ss_pred c------ccceEEEEeecCCcccccCCCCC--hhHhhhhhhhhcccceecchHHHHHHHHHHHHHhcCCCCeEEecccch
Q 039928 212 L------IKHSVVELVVSDGGCLQASLPPH--LEEYQRLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMI 283 (675)
Q Consensus 212 L------kk~~VI~l~~~d~rLa~~~LP~~--~~eiQrLRCRvnfhALrF~p~IeeLg~~LV~RLR~~g~pyIALHLRfE 283 (675)
+ .+|=|+.|++. ....|.. .-.||| -|++++.|.+.|++.++.--. +||||+|||-=
T Consensus 157 W~~~~p~~~~pVlAf~ga-----Pa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~--rpyVgIHLR~G 221 (362)
T 3zy2_A 157 WLEKFPSEEYPVLAFSSA-----PAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLA--KPFVAVHLRND 221 (362)
T ss_dssp HHHHSCTTTCSEEEESSC-----SSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCC--SSEEEEEECCC
T ss_pred HHHhCCcccCceEeecCC-----CCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcC--CCeEEEEEecC
Confidence 1 25678888763 3335542 122444 489999999999999988443 49999999998
Q ss_pred hhhhhhcCCcc
Q 039928 284 RDALAYHGCAE 294 (675)
Q Consensus 284 ~DMLAfSgC~~ 294 (675)
.|+.-. |.+
T Consensus 222 ~DW~~a--C~h 230 (362)
T 3zy2_A 222 ADWVRV--CEH 230 (362)
T ss_dssp HHHHHH--HHT
T ss_pred CcHHHH--Hhh
Confidence 888755 654
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=77.92 E-value=4.3 Score=45.09 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=78.7
Q ss_pred CCcEEEEEE--cCchhhhHHHHHHHHHHHhHhcceEeccccCcccccCCCCCCCCCCCcccChHHHHHHccCCcEEeccC
Q 039928 100 ANGFIFVRI--QGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEQFMAALAKDINIVKTL 177 (675)
Q Consensus 100 snGYL~V~a--nGGLNQqR~~IcDAVaVARiLNATLVIP~Ld~ss~~~~d~sd~S~F~DIFDvdhFI~sLk~DVrIVk~L 177 (675)
+..||+... ..|+--+-..++=+.++|-.+|-||||-.-. |... ...|+++|.. +.......
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~-----w~Y~--~g~w~~yF~P--~s~~C~~~------- 207 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN-----WRYA--TGGWETVFRP--VSETCTDR------- 207 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT-----CSSC--TTCGGGTBCC--SCSSCCCC-------
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC-----CCcC--CCCHHHhhhC--cCccccCC-------
Confidence 347888876 4788888888888899999999999993322 2211 1247777764 11111110
Q ss_pred chhhhhhcccCCCCccccccCCChhhHhhhcccccccceEEEEeecCC-----cccccCCCCC-hhHhhhhh--------
Q 039928 178 PKNLKGARRKKKIPSFRVSYSASPYFYLHHVLPVLIKHSVVELVVSDG-----GCLQASLPPH-LEEYQRLR-------- 243 (675)
Q Consensus 178 P~~l~~~~~~~~~~~~rvp~~ss~~yY~~~VLP~Lkk~~VI~l~~~d~-----rLa~~~LP~~-~~eiQrLR-------- 243 (675)
|. .-.+ .|..... -..+.||.+...+. .+++-.+|.. ...+++|.
T Consensus 208 ~~------------~~~~-~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~ 266 (526)
T 2de0_X 208 SG------------ISTG-HWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWV 266 (526)
T ss_dssp CC------------SCCC-BCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHH
T ss_pred Cc------------cccC-CCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHH
Confidence 00 0000 1111100 12344444432221 1121123322 12234442
Q ss_pred -hhhcccceecchHHHHHHHHHHHHHhcCCCCeEEecccc
Q 039928 244 -CRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGM 282 (675)
Q Consensus 244 -CRvnfhALrF~p~IeeLg~~LV~RLR~~g~pyIALHLRf 282 (675)
+.+.| -+|++++|++..+.+.+.+.- ++|.|+||.|-
T Consensus 267 ~q~~~y-l~rP~~~i~~~I~~~~~~l~~-~~piVGVHIRr 304 (526)
T 2de0_X 267 SQFVKY-LIRPQPWLEKEIEEATKKLGF-KHPVIGVHVRR 304 (526)
T ss_dssp HHHHHH-HTCBCHHHHHHHHHHHHHHTC-CSSEEEEEECC
T ss_pred HHHHHH-HcCCCHHHHHHHHHHHHHhCC-CCCEEEEEEeC
Confidence 11112 278999999999999988765 56999999995
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=49.79 E-value=15 Score=37.11 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=34.9
Q ss_pred CCcEEEEEEcCchhhhHHHHHHHHHHHhHhcceEeccccC
Q 039928 100 ANGFIFVRIQGGFHEIRNSISDVVVVARLLNATLVIPEIQ 139 (675)
Q Consensus 100 snGYL~V~anGGLNQqR~~IcDAVaVARiLNATLVIP~Ld 139 (675)
+..||++...|||-.|=-+++-|-++|.+.|-+|+|--..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~ 42 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG 42 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 4579999999999877788999999999999999986443
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=36.12 E-value=17 Score=28.39 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=20.2
Q ss_pred ceecchHHHHHHHHHHHHHhcCCCCe
Q 039928 250 ALRFRQEVQELATRILRRLRAPGRPF 275 (675)
Q Consensus 250 ALrF~p~IeeLg~~LV~RLR~~g~py 275 (675)
|+-|+.-+.++|.++|+||++ |..|
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt-Ge~F 26 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS-GERF 26 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TCCH
T ss_pred CccHHHHHHHHHHHHHHHHHc-cccH
Confidence 456778899999999999997 4444
No 6
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=19.86 E-value=52 Score=33.21 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=27.3
Q ss_pred ccceecchHHHHHHHHHHHHHhcCCCCeEEecccchh
Q 039928 248 FHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIR 284 (675)
Q Consensus 248 fhALrF~p~IeeLg~~LV~RLR~~g~pyIALHLRfE~ 284 (675)
|.-|+++++|++..+.+.+.+-. +.++|+||.|.-.
T Consensus 145 ~~yl~p~~~i~~~i~~~~~~~~~-~~~~VGVHIRrgD 180 (330)
T 2hhc_A 145 FRNIKLRSEIRARIDALYEEHFS-GHSIIGVHVRHGN 180 (330)
T ss_dssp HHHSCBCHHHHHHHHHHHHHHTT-TSEEEEEEECC--
T ss_pred HhcCCccHHHHHHHHHHHHHhcc-CCceEEEEEecCC
Confidence 46789999999999888866422 3589999999644
No 7
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=19.67 E-value=65 Score=32.93 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=31.3
Q ss_pred CchhHHHHhhhh-hhhhhhh-hheeeeeccceeeeccCCCCCCCCCh-----hhhhh-ccccccCCCCcccccChHHHHH
Q 039928 456 PESTVMELRTNA-HKLLWEA-IDYMVCVEADVFIPGFDRDGKGHPNF-----ASLVM-GHRLYQSASSKTYRPDRRKVVK 527 (675)
Q Consensus 456 ~~~s~~~~r~~~-h~l~~AA-LDYiV~l~SDvFvpt~~~~G~g~~Nm-----a~~v~-GHR~Y~g~~~kTIrPdrk~la~ 527 (675)
++.|.+-+++.. |.....- .||++|+.+|.-+-+.-| .--+ +.+|. =|--|++..++.+.=+|+..+.
T Consensus 67 qd~sm~Rm~~i~~~~~~~~~evDyLf~~dvd~~F~~~vG----~E~L~p~~~~~lva~lHp~~y~~~~~~fpYERrp~S~ 142 (246)
T 4ayl_A 67 PDNTLKRFHIFLRIKEQLERETDYLFFFNANLLFTSPIG----KEILPPSDSNGLLGTMHPGFYNKPNSEFTYERRDAST 142 (246)
T ss_dssp THHHHTHHHHHHTTHHHHHHHCSEEEEECTTEEECSCBC----GGGSCCTTSCCEEEEBCGGGC----------------
T ss_pred cccchHHHHHHHHHHHHHHhhCCEEEEEeCCceeeccCC----HHHcccCCCCCEEEEechhhhCCCcccCcccCCcccc
Confidence 577776666533 3444455 899999999987754332 1123 33333 2777777655666667776666
Q ss_pred HHHhhhc
Q 039928 528 LLEETRD 534 (675)
Q Consensus 528 Lf~~~~~ 534 (675)
.+.-..+
T Consensus 143 AyIp~~e 149 (246)
T 4ayl_A 143 AYIPEGE 149 (246)
T ss_dssp -------
T ss_pred ccccCCC
Confidence 6643333
No 8
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=17.56 E-value=1.1e+02 Score=27.95 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCceeEEE
Q 039928 333 TCPLMPEEVGILLRAYGYSWDTIIYV 358 (675)
Q Consensus 333 ~CPLTPeEVgl~LrALGf~~~T~IYl 358 (675)
.||||+||+...|+.|--+.+ ..||
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi 41 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFI 41 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeee
Confidence 899999999999999996665 3443
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=16.03 E-value=37 Score=27.33 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=11.0
Q ss_pred cchhhHHHhcccc
Q 039928 368 RTLIPLHAMFANV 380 (675)
Q Consensus 368 ~~L~pL~~~FPnl 380 (675)
..+..|++|||++
T Consensus 14 ~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 14 DTLNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHHHSTTS
T ss_pred HHHHHHHHHcccC
Confidence 3578899999998
No 10
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.58 E-value=77 Score=25.06 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHHHc
Q 039928 331 NGTCPLMPEEVGILLRAY 348 (675)
Q Consensus 331 ~G~CPLTPeEVgl~LrAL 348 (675)
+...|.|++|..+|++|+
T Consensus 10 ~~~~~WT~eE~~~F~~~~ 27 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKF 27 (61)
T ss_dssp SCCCSCCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH
Confidence 678899999999999996
Done!