Query 039928
Match_columns 675
No_of_seqs 202 out of 398
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 04:53:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 31.9 19 0.0014 30.9 4.1 31 333-363 17-47 (118)
2 d1oqya2 a.5.2.1 (A:317-360) DN 24.0 7 0.00051 28.6 -0.2 26 337-362 1-30 (44)
3 d1jjcb2 a.6.1.1 (B:400-474) Do 15.9 35 0.0026 26.3 2.3 23 328-351 13-35 (75)
4 d1r03a_ a.25.1.1 (A:) (Apo)fer 15.3 12 0.00091 32.6 -0.7 59 243-306 2-60 (171)
5 d1wgla_ a.5.2.4 (A:) Toll-inte 15.0 19 0.0014 27.5 0.5 15 367-381 10-24 (59)
6 d1mn3a_ a.5.2.4 (A:) Vacuolar 14.2 21 0.0015 26.9 0.4 14 368-381 14-27 (54)
7 d1sfsa_ c.1.8.8 (A:) Unnamed h 13.8 36 0.0026 31.6 2.1 22 341-362 81-102 (213)
8 d1fcda2 c.3.1.5 (A:115-255) Fl 11.7 63 0.0046 27.2 2.9 50 332-381 45-98 (141)
9 d2g7ja1 d.198.5.1 (A:1-112) Pu 11.4 44 0.0032 28.1 1.7 19 336-354 3-21 (112)
10 d1i9sa_ c.45.1.1 (A:) mRNA cap 11.0 72 0.0052 28.0 3.2 18 100-119 114-131 (194)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=31.91 E-value=19 Score=30.90 Aligned_cols=31 Identities=13% Similarity=0.122 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCceeEEEecccc
Q 039928 333 TCPLMPEEVGILLRAYGYSWDTIIYVSGGEV 363 (675)
Q Consensus 333 ~CPLTPeEVgl~LrALGf~~~T~IYlAaGei 363 (675)
+||||+||+.-.|+.|==+.+..+...+-|.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~~~i~v~rE~ 47 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNKLFIKICREL 47 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCEEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcceeEEEEcccc
Confidence 7999999999999999877776533334444
No 2
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.95 E-value=7 Score=28.64 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=18.6
Q ss_pred CHHHHHH--HHHHcCCCCce--eEEEeccc
Q 039928 337 MPEEVGI--LLRAYGYSWDT--IIYVSGGE 362 (675)
Q Consensus 337 TPeEVgl--~LrALGf~~~T--~IYlAaGe 362 (675)
||+|..- =|.+|||+++. ..|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 5666443 48899999997 46777654
No 3
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=15.85 E-value=35 Score=26.32 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=19.8
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCC
Q 039928 328 LRLNGTCPLMPEEVGILLRAYGYS 351 (675)
Q Consensus 328 ~R~~G~CPLTPeEVgl~LrALGf~ 351 (675)
.+..|.. ++++|+.-+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 4556776 9999999999999996
No 4
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]}
Probab=15.26 E-value=12 Score=32.64 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=37.9
Q ss_pred hhhhcccceecchHHHHHHHHHHHHHhcCCCCeEEecccchhhhhhhcCCccccchhHHHHHHH
Q 039928 243 RCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQH 306 (675)
Q Consensus 243 RCRvnfhALrF~p~IeeLg~~LV~RLR~~g~pyIALHLRfE~DMLAfSgC~~~~~~~~~el~~~ 306 (675)
|||-|| .|++++.-+..+..=-..+-.|+++=-=|..|.+++.||+..|.....|..++
T Consensus 2 ~~r~n~-----~~e~e~aLN~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~a~EE~~H 60 (171)
T d1r03a_ 2 RVRQNF-----HPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEH 60 (171)
T ss_dssp TTCCSC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 677776 58999777776665322233565554456678888888887776554444333
No 5
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.00 E-value=19 Score=27.50 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.6
Q ss_pred ccchhhHHHhccccc
Q 039928 367 QRTLIPLHAMFANVV 381 (675)
Q Consensus 367 ~~~L~pL~~~FPnl~ 381 (675)
+..|.-|++|||++-
T Consensus 10 Ee~i~~LkeMFP~~D 24 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMD 24 (59)
T ss_dssp HHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHCCCCC
Confidence 456899999999984
No 6
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.15 E-value=21 Score=26.86 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=11.6
Q ss_pred cchhhHHHhccccc
Q 039928 368 RTLIPLHAMFANVV 381 (675)
Q Consensus 368 ~~L~pL~~~FPnl~ 381 (675)
..++-|++|||++-
T Consensus 14 e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHCTTSC
T ss_pred HHHHHHHHHCCCCC
Confidence 45788999999983
No 7
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.84 E-value=36 Score=31.64 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=17.7
Q ss_pred HHHHHHHcCCCCceeEEEeccc
Q 039928 341 VGILLRAYGYSWDTIIYVSGGE 362 (675)
Q Consensus 341 Vgl~LrALGf~~~T~IYlAaGe 362 (675)
+.-.=++||||+.|.||++=-.
T Consensus 81 A~~~A~~lGfp~gt~Iy~dve~ 102 (213)
T d1sfsa_ 81 AVFHARRLGIPKNKLLFANIED 102 (213)
T ss_dssp HHHHHHHTTCCSSCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEEecc
Confidence 4445678999999999998764
No 8
>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=11.72 E-value=63 Score=27.16 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHH----HHcCCCCceeEEEecccccCcccchhhHHHhccccc
Q 039928 332 GTCPLMPEEVGILL----RAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVV 381 (675)
Q Consensus 332 G~CPLTPeEVgl~L----rALGf~~~T~IYlAaGeiYGG~~~L~pL~~~FPnl~ 381 (675)
=+||=-|.|+++|+ |.-|-..++.|..+......+......+..++..++
T Consensus 45 ~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (141)
T d1fcda2 45 FRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGT 98 (141)
T ss_dssp CSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTT
T ss_pred ccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHH
Confidence 48999999999887 777999999888776654332222233444454443
No 9
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=11.40 E-value=44 Score=28.07 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHcCCCCce
Q 039928 336 LMPEEVGILLRAYGYSWDT 354 (675)
Q Consensus 336 LTPeEVgl~LrALGf~~~T 354 (675)
|-|.||+..|..-||..+.
T Consensus 3 LRPDEVArVLe~aGF~~d~ 21 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVDV 21 (112)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999997654
No 10
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.96 E-value=72 Score=28.05 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.4
Q ss_pred CCcEEEEEEcCchhhhHHHH
Q 039928 100 ANGFIFVRIQGGFHEIRNSI 119 (675)
Q Consensus 100 snGYL~V~anGGLNQqR~~I 119 (675)
.++-++|+|.+|.+ |++.
T Consensus 114 ~~~~V~VHC~~G~~--Rsg~ 131 (194)
T d1i9sa_ 114 PPELIGVHCTHGFN--RTGF 131 (194)
T ss_dssp -CCEEEEECSSSSH--HHHH
T ss_pred CCCeEEEECCCCCC--ccHH
Confidence 57899999999999 8884
Done!