Query 039929
Match_columns 113
No_of_seqs 110 out of 348
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 99.9 4E-25 8.7E-30 160.8 9.5 103 1-104 80-187 (187)
2 COG4894 Uncharacterized conser 99.6 1.2E-15 2.6E-20 107.5 8.1 61 43-110 98-158 (159)
3 PF03803 Scramblase: Scramblas 98.6 5.9E-07 1.3E-11 66.4 10.7 96 10-111 114-220 (221)
4 PF04525 Tub_2: Tubby C 2; In 95.9 0.089 1.9E-06 38.0 8.5 58 11-73 12-72 (187)
5 KOG0621 Phospholipid scramblas 93.7 0.24 5.2E-06 38.9 6.2 70 42-111 199-280 (292)
6 COG4894 Uncharacterized conser 91.2 0.18 3.9E-06 36.1 2.3 17 66-87 78-94 (159)
7 PF03803 Scramblase: Scramblas 75.5 19 0.00042 26.2 7.1 23 49-72 126-148 (221)
8 PF00384 Molybdopterin: Molybd 58.3 10 0.00022 29.9 2.8 44 63-109 141-185 (432)
9 cd02769 MopB_DMSOR-BSOR-TMAOR 56.0 7.1 0.00015 33.1 1.6 26 82-107 225-251 (609)
10 COG4998 Predicted endonuclease 53.4 30 0.00065 25.5 4.3 45 52-103 22-72 (209)
11 TIGR02164 torA trimethylamine- 45.7 14 0.0003 32.6 1.9 22 86-107 272-294 (822)
12 TIGR00509 bisC_fam molybdopter 45.6 15 0.00032 32.1 2.0 25 83-107 222-247 (770)
13 PF01167 Tub: Tub family; Int 44.8 1E+02 0.0022 23.4 6.3 44 53-104 199-243 (246)
14 cd02750 MopB_Nitrate-R-NarG-li 42.7 18 0.0004 29.5 2.0 22 85-106 218-240 (461)
15 TIGR03479 DMSO_red_II_alp DMSO 41.9 13 0.00027 33.4 1.1 23 85-107 272-295 (912)
16 PRK14991 tetrathionate reducta 39.8 15 0.00033 33.5 1.3 26 82-107 338-364 (1031)
17 TIGR01580 narG respiratory nit 36.0 21 0.00045 33.4 1.5 27 84-110 292-319 (1235)
18 cd02765 MopB_4 The MopB_4 CD i 34.2 25 0.00054 29.6 1.6 19 85-103 207-225 (567)
19 PRK14990 anaerobic dimethyl su 34.2 24 0.00052 31.0 1.6 23 85-107 284-307 (814)
20 cd02760 MopB_Phenylacetyl-CoA- 33.1 24 0.00053 31.1 1.4 23 85-107 222-245 (760)
21 cd02756 MopB_Arsenite-Ox Arsen 31.2 41 0.00088 29.4 2.4 22 84-105 296-317 (676)
22 TIGR02693 arsenite_ox_L arseni 28.8 38 0.00083 30.0 1.9 20 84-103 291-310 (806)
23 cd02770 MopB_DmsA-EC This CD ( 28.1 39 0.00083 28.7 1.8 22 84-105 217-238 (617)
24 PF01643 Acyl-ACP_TE: Acyl-ACP 27.7 1.1E+02 0.0024 23.0 4.1 33 42-74 85-117 (261)
25 PRK15102 trimethylamine N-oxid 27.6 37 0.0008 30.0 1.6 17 86-102 275-291 (825)
26 cd02754 MopB_Nitrate-R-NapA-li 26.9 49 0.0011 27.5 2.1 22 84-105 206-227 (565)
27 cd02762 MopB_1 The MopB_1 CD i 26.5 48 0.0011 27.5 2.1 22 84-105 209-230 (539)
28 COG1029 FwdB Formylmethanofura 26.2 1.3E+02 0.0028 24.9 4.3 25 84-108 195-219 (429)
29 COG5148 RPN10 26S proteasome r 25.8 32 0.00069 25.9 0.8 28 81-108 193-221 (243)
30 cd02766 MopB_3 The MopB_3 CD i 25.2 45 0.00097 27.6 1.6 22 84-105 204-225 (501)
31 TIGR02166 dmsA_ynfE anaerobic 25.2 45 0.00097 29.1 1.7 19 84-102 266-284 (797)
32 PRK13532 nitrate reductase cat 24.3 53 0.0012 29.0 2.0 22 85-106 256-278 (830)
33 PF01947 DUF98: Protein of unk 23.0 1.1E+02 0.0025 21.3 3.1 28 45-74 115-142 (149)
34 cd02755 MopB_Thiosulfate-R-lik 22.2 49 0.0011 26.9 1.3 21 85-105 205-225 (454)
35 cd02759 MopB_Acetylene-hydrata 22.1 65 0.0014 26.3 2.0 22 84-105 208-229 (477)
36 PLN02370 acyl-ACP thioesterase 22.0 1.3E+02 0.0028 24.9 3.7 30 44-73 223-252 (419)
37 COG0243 BisC Anaerobic dehydro 22.0 47 0.001 28.9 1.2 19 86-104 251-269 (765)
38 TIGR01706 NAPA periplasmic nit 21.6 62 0.0013 28.7 1.9 19 85-103 256-274 (830)
39 KOG1693 emp24/gp25L/p24 family 21.5 3.1E+02 0.0068 20.6 5.3 46 43-89 50-98 (209)
40 cd02751 MopB_DMSOR-like The Mo 21.1 68 0.0015 27.1 2.0 21 84-104 225-245 (609)
41 cd02753 MopB_Formate-Dh-H Form 21.0 64 0.0014 26.4 1.7 21 85-105 204-224 (512)
42 cd02757 MopB_Arsenate-R This C 20.4 69 0.0015 26.7 1.8 22 84-105 211-232 (523)
43 cd02764 MopB_PHLH The MopB_PHL 20.4 68 0.0015 26.6 1.8 22 84-105 251-272 (524)
44 PF14539 DUF4442: Domain of un 20.2 1.7E+02 0.0037 19.6 3.5 19 54-73 112-130 (132)
45 cd02758 MopB_Tetrathionate-Ra 20.1 1E+02 0.0022 27.1 2.9 25 82-106 263-288 (735)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=99.92 E-value=4e-25 Score=160.76 Aligned_cols=103 Identities=34% Similarity=0.669 Sum_probs=60.6
Q ss_pred CeeecCCCCCCCeEEEEEecccCCccceEEEEEcCCC-----CCceeeEEEEeeecCceeEEEeCCCCcEEEEEeeeeee
Q 039929 1 QVFRGESTEPQDLIFSAKMSSMWNVRTKLDVFLANNT-----KEDVCDFRVKGSWFERSCTIYAGESSTIIAQMHKKHTV 75 (113)
Q Consensus 1 ~~~~g~~~~~~~~lf~vk~~~~~~~k~~~~V~~~~~~-----~~~~~~~~i~G~~~~~~~~I~~~~~g~~VAev~rk~~~ 75 (113)
++|+|++.+.++|+|++|+++.+..++++.+|+.+.. .++.++|+|+|+|++++|+|++. .|++||||+||+..
T Consensus 80 ~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~-~g~~VA~i~rk~~~ 158 (187)
T PF04525_consen 80 EIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDS-GGRVVAEISRKYSS 158 (187)
T ss_dssp EEEETT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEEC-C--EEEEEEE----
T ss_pred EEEECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEc-CCCEEEEEecccce
Confidence 4688887777899999999887778889999987542 34678999999999999999974 49999999999988
Q ss_pred eeEeeeccEEEEEEeCCCCHHHHHHHHHh
Q 039929 76 QSILIGKDNFAVTVYPNIDYAFIVALIVI 104 (113)
Q Consensus 76 ~~~~~g~d~y~l~V~pg~D~ali~alvv~ 104 (113)
+++++|+|+|.|+|+||+|++|+||||||
T Consensus 159 k~~~~~~dty~l~V~pg~D~~lv~alvvi 187 (187)
T PF04525_consen 159 KKWFSGRDTYTLTVAPGVDQALVVALVVI 187 (187)
T ss_dssp ------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred eeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence 89999999999999999999999999986
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=1.2e-15 Score=107.47 Aligned_cols=61 Identities=23% Similarity=0.445 Sum_probs=58.1
Q ss_pred eEEEEeeecCceeEEEeCCCCcEEEEEeeeeeeeeEeeeccEEEEEEeCCCCHHHHHHHHHhhccccc
Q 039929 43 DFRVKGSWFERSCTIYAGESSTIIAQMHKKHTVQSILIGKDNFAVTVYPNIDYAFIVALIVILDEINH 110 (113)
Q Consensus 43 ~~~i~G~~~~~~~~I~~~~~g~~VAev~rk~~~~~~~~g~d~y~l~V~pg~D~ali~alvv~lD~~~~ 110 (113)
+++++||+|+.+|++.++ ++++|+|+||| +.|+|||.|+|+|+.|.++|++++||+|++..
T Consensus 98 ~~eihGNi~d~efkl~dg--~~~~aeVsKkw-----f~~rdTY~l~vapde~a~lii~i~VaLD~v~~ 158 (159)
T COG4894 98 NWEIHGNIWDDEFKLTDG--ENVRAEVSKKW-----FSWRDTYHLQVAPDEDALLIIAIAVALDMVLY 158 (159)
T ss_pred CeEEecceeceEEEEecC--Cceehhheeee-----EeccceEEEEEcCchhhHHHHHHHHHHHHHhc
Confidence 499999999999999999 78999999999 88999999999999999999999999999864
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=98.63 E-value=5.9e-07 Score=66.44 Aligned_cols=96 Identities=23% Similarity=0.376 Sum_probs=71.8
Q ss_pred CCCeEEEEEecccCCccceEEEEEcCCCCCceeeEEEEee------ecCceeEEEeCCCCcEEEEEeeeee--eeeEeee
Q 039929 10 PQDLIFSAKMSSMWNVRTKLDVFLANNTKEDVCDFRVKGS------WFERSCTIYAGESSTIIAQMHKKHT--VQSILIG 81 (113)
Q Consensus 10 ~~~~lf~vk~~~~~~~k~~~~V~~~~~~~~~~~~~~i~G~------~~~~~~~I~~~~~g~~VAev~rk~~--~~~~~~g 81 (113)
.++++-+|+++.. ..++.++|+-+.+ ..-+.|+|. +.++.|.|++.+ |+.||+|+|+|+ .++.+..
T Consensus 114 ~g~~iG~I~q~~~-~~~~~f~I~d~~~----~~~~~I~gp~~~~~~~~~~~F~I~~~~-~~~vg~I~k~w~G~~~e~~t~ 187 (221)
T PF03803_consen 114 PGNLIGSIRQPFS-CCRPNFDIFDANG----NPIFTIKGPCCCCSCCCDWEFEIKDPN-GQEVGSITKKWSGFCRELFTD 187 (221)
T ss_pred CCcEEEEEEEcCc-ccceEEEEEECCC----ceEEEEeCCcceeccccceeeeeeccc-CcEEEEEEEecCCcchhhccc
Confidence 4556666665432 2355666654443 356888887 457889999974 799999999995 4567888
Q ss_pred ccEEEEEEeCCCC---HHHHHHHHHhhcccccc
Q 039929 82 KDNFAVTVYPNID---YAFIVALIVILDEINHA 111 (113)
Q Consensus 82 ~d~y~l~V~pg~D---~ali~alvv~lD~~~~~ 111 (113)
.|.|.|+..|..| -|+++|.++.+|.++=|
T Consensus 188 ~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~Fe 220 (221)
T PF03803_consen 188 ADNFVIEFPPDLDVEQKALLLGAAFLIDYMYFE 220 (221)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhhhhhhc
Confidence 9999999999886 57899999999988644
No 4
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=95.87 E-value=0.089 Score=38.00 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=30.5
Q ss_pred CCeEEEEEecccCCccceEEEEEcCCCCCceeeEEEEe-eec--CceeEEEeCCCCcEEEEEeeee
Q 039929 11 QDLIFSAKMSSMWNVRTKLDVFLANNTKEDVCDFRVKG-SWF--ERSCTIYAGESSTIIAQMHKKH 73 (113)
Q Consensus 11 ~~~lf~vk~~~~~~~k~~~~V~~~~~~~~~~~~~~i~G-~~~--~~~~~I~~~~~g~~VAev~rk~ 73 (113)
....++|++..+.+.+..+.|+=..+ ..-|+|+| .++ .+...|.|. +|++++.|++|.
T Consensus 12 ~~~~l~v~~k~~~~~~~~f~V~D~~G----~~vf~V~g~~~~s~~~~~~l~D~-~G~~L~~i~~k~ 72 (187)
T PF04525_consen 12 QPVTLTVKKKSLSFSGDDFTVYDENG----NVVFRVDGGKFFSIGKKRTLMDA-SGNPLFTIRRKL 72 (187)
T ss_dssp S-EEEEEE----------EEEEETTS-----EEEEEE--SCTTBTTEEEEE-T-TS-EEEEEE---
T ss_pred CceEEEEEEEEeeecCCCEEEEcCCC----CEEEEEEEecccCCCCEEEEECC-CCCEEEEEEeee
Confidence 34568887776655567888875543 47899999 554 567888888 599999999974
No 5
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=93.72 E-value=0.24 Score=38.91 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=51.9
Q ss_pred eeEEEEee-------ecCceeEEEeCCCCcEEEEEeeeee--eeeEeeeccEEEEEEeCCCC---HHHHHHHHHhhcccc
Q 039929 42 CDFRVKGS-------WFERSCTIYAGESSTIIAQMHKKHT--VQSILIGKDNFAVTVYPNID---YAFIVALIVILDEIN 109 (113)
Q Consensus 42 ~~~~i~G~-------~~~~~~~I~~~~~g~~VAev~rk~~--~~~~~~g~d~y~l~V~pg~D---~ali~alvv~lD~~~ 109 (113)
..+.|+|. +.+..+.|...+.|+.|++|.|+|. .++.+...|+|.|.-....| -++++|-++.+|.+.
T Consensus 199 ~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~fTDad~f~v~FPldLdvk~kavllga~flID~~~ 278 (292)
T KOG0621|consen 199 LVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREAFTDADTFVVHFPLDLDVKLKALLLGSTFLIDYMS 278 (292)
T ss_pred eEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhheeccceeeEecCCcCCHHHHhhhhhheeeEEEEE
Confidence 34666666 2334455555556999999999995 66889999999998876666 467888888888776
Q ss_pred cc
Q 039929 110 HA 111 (113)
Q Consensus 110 ~~ 111 (113)
-|
T Consensus 279 Fe 280 (292)
T KOG0621|consen 279 FE 280 (292)
T ss_pred Ee
Confidence 54
No 6
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=91.16 E-value=0.18 Score=36.09 Aligned_cols=17 Identities=29% Similarity=0.669 Sum_probs=9.5
Q ss_pred EEEEeeeeeeeeEeeeccEEEE
Q 039929 66 IAQMHKKHTVQSILIGKDNFAV 87 (113)
Q Consensus 66 VAev~rk~~~~~~~~g~d~y~l 87 (113)
+++|++|.+ .++|.|.+
T Consensus 78 ~~~vrKK~t-----f~Rdk~e~ 94 (159)
T COG4894 78 VCEVRKKVT-----FSRDKFEI 94 (159)
T ss_pred EEEEEEEEE-----EEeeeEEE
Confidence 566666653 23666654
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=75.45 E-value=19 Score=26.21 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=12.3
Q ss_pred eecCceeEEEeCCCCcEEEEEeee
Q 039929 49 SWFERSCTIYAGESSTIIAQMHKK 72 (113)
Q Consensus 49 ~~~~~~~~I~~~~~g~~VAev~rk 72 (113)
+++...|.|.+.+ |..++.|+..
T Consensus 126 ~~~~~~f~I~d~~-~~~~~~I~gp 148 (221)
T PF03803_consen 126 SCCRPNFDIFDAN-GNPIFTIKGP 148 (221)
T ss_pred cccceEEEEEECC-CceEEEEeCC
Confidence 3445556666553 4555555544
No 8
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=58.34 E-value=10 Score=29.92 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=28.4
Q ss_pred CcEEEEEeeeeeeeeEeeeccEEEEEEeCCCCHHHHHHHH-Hhhcccc
Q 039929 63 STIIAQMHKKHTVQSILIGKDNFAVTVYPNIDYAFIVALI-VILDEIN 109 (113)
Q Consensus 63 g~~VAev~rk~~~~~~~~g~d~y~l~V~pg~D~ali~alv-v~lD~~~ 109 (113)
|..+..|.-.++. ....-.+.|.|.||.|.+|++||+ +++++..
T Consensus 141 g~k~v~vdP~~t~---~a~~ad~~i~i~PGtD~al~~a~~~~ii~~~~ 185 (432)
T PF00384_consen 141 GAKLVVVDPRRTP---TAAKADEWIPIRPGTDAALALAMAHVIIDEGL 185 (432)
T ss_dssp TSEEEEEESSB-H---HGGGTSEEEEE-TTTHHHHHHHHHHHHHHTTT
T ss_pred CcceEEEEeccch---hhhhccccccccccccHHhhcccccceeeccc
Confidence 3444555555431 224567889999999999999988 5665543
No 9
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=55.96 E-value=7.1 Score=33.14 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=20.6
Q ss_pred ccEEEEEEeCCCCHHHHHHHH-Hhhcc
Q 039929 82 KDNFAVTVYPNIDYAFIVALI-VILDE 107 (113)
Q Consensus 82 ~d~y~l~V~pg~D~ali~alv-v~lD~ 107 (113)
.|...|.|.||.|.+|++||+ +++++
T Consensus 225 add~~l~irPGTD~ALalam~~~ii~e 251 (609)
T cd02769 225 LGAEWIAIRPGTDVALMLALAHTLVTE 251 (609)
T ss_pred hcCcEeccCCCcHHHHHHHHHHHHHHc
Confidence 355788999999999999998 44443
No 10
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=53.36 E-value=30 Score=25.49 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=33.0
Q ss_pred CceeEEEeCCCCcEEEEEeeeeeeeeEeeeccEEEEEEeCCC-C-----HHHHHHHHH
Q 039929 52 ERSCTIYAGESSTIIAQMHKKHTVQSILIGKDNFAVTVYPNI-D-----YAFIVALIV 103 (113)
Q Consensus 52 ~~~~~I~~~~~g~~VAev~rk~~~~~~~~g~d~y~l~V~pg~-D-----~ali~alvv 103 (113)
.+++.|.++ |..|+||.--- -.+..+|.++|..|. | ++.+-|.+.
T Consensus 22 Arn~~ve~e--gveVgEiDIVA-----ek~GerYavEVKAG~vdi~avRQAYvnaki~ 72 (209)
T COG4998 22 ARNMPVEDE--GVEVGEIDIVA-----EKGGERYAVEVKAGMVDINAVRQAYVNAKIS 72 (209)
T ss_pred eecceeecC--CeEEEEEEEEE-----ecCCcEEEEEEeccccchHHHHHHHHHHHhh
Confidence 467888888 89999987642 236889999999996 4 455555443
No 11
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=45.69 E-value=14 Score=32.58 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=18.5
Q ss_pred EEEEeCCCCHHHHHHHH-Hhhcc
Q 039929 86 AVTVYPNIDYAFIVALI-VILDE 107 (113)
Q Consensus 86 ~l~V~pg~D~ali~alv-v~lD~ 107 (113)
.|.|.||.|.||++||+ +++++
T Consensus 272 ~l~irPGTD~AL~lam~~vii~e 294 (822)
T TIGR02164 272 HLYVNPQTDVALMLALAHTLYSE 294 (822)
T ss_pred EeccCCCcHHHHHHHHHHHHHHC
Confidence 78999999999999998 45444
No 12
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=45.55 E-value=15 Score=32.09 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.1
Q ss_pred cEEEEEEeCCCCHHHHHHHH-Hhhcc
Q 039929 83 DNFAVTVYPNIDYAFIVALI-VILDE 107 (113)
Q Consensus 83 d~y~l~V~pg~D~ali~alv-v~lD~ 107 (113)
+...|.|.||.|.+|++||+ +++++
T Consensus 222 aD~~l~irPGTD~AL~lam~~~ii~e 247 (770)
T TIGR00509 222 GAEWIPPNPQTDVALMLGLAHTLVTE 247 (770)
T ss_pred cCeEeCcCCCcHHHHHHHHHHHHHHc
Confidence 35778999999999999998 45444
No 13
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=44.80 E-value=1e+02 Score=23.42 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=28.7
Q ss_pred ceeEEEeC-CCCcEEEEEeeeeeeeeEeeeccEEEEEEeCCCCHHHHHHHHHh
Q 039929 53 RSCTIYAG-ESSTIIAQMHKKHTVQSILIGKDNFAVTVYPNIDYAFIVALIVI 104 (113)
Q Consensus 53 ~~~~I~~~-~~g~~VAev~rk~~~~~~~~g~d~y~l~V~pg~D~ali~alvv~ 104 (113)
.+|.++.. +.+++|.+..|- ++|+|.|++.-..-+.-+.|+|++
T Consensus 199 KNFql~~~~~~~~~~lqfGk~--------~~~~f~~d~~~Pls~~qAF~i~ls 243 (246)
T PF01167_consen 199 KNFQLVHPSDPDRIVLQFGKV--------GKDVFTMDFRYPLSPLQAFAIALS 243 (246)
T ss_dssp TEEEEEBTTBTTSESEEEEEE--------ETTEEEEEEETT-BHHHHHHHHHH
T ss_pred ceeEEEccCCCCeEEEEEEEe--------cCCEEEEEecCCCCHHHHHHHHHh
Confidence 56777654 235677777663 799999999988865545555543
No 14
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=42.74 E-value=18 Score=29.46 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=18.1
Q ss_pred EEEEEeCCCCHHHHHHHH-Hhhc
Q 039929 85 FAVTVYPNIDYAFIVALI-VILD 106 (113)
Q Consensus 85 y~l~V~pg~D~ali~alv-v~lD 106 (113)
..|.|.||.|.+|++||+ ++++
T Consensus 218 ~~l~i~PGtD~al~lal~~~i~~ 240 (461)
T cd02750 218 LWVPIKPGTDAALALAMAHVIIK 240 (461)
T ss_pred EEeccCCCcHHHHHHHHHHHHHH
Confidence 457899999999999998 4443
No 15
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=41.93 E-value=13 Score=33.35 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=18.8
Q ss_pred EEEEEeCCCCHHHHHHHH-Hhhcc
Q 039929 85 FAVTVYPNIDYAFIVALI-VILDE 107 (113)
Q Consensus 85 y~l~V~pg~D~ali~alv-v~lD~ 107 (113)
..|-|.||.|.||++||+ +++++
T Consensus 272 ~wlpirPGTD~ALalam~~vIi~e 295 (912)
T TIGR03479 272 LWLPVRVGTDAALALGMVQVIIDE 295 (912)
T ss_pred eecCCCCCcHHHHHHHHHHHHHHc
Confidence 357899999999999998 55554
No 16
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=39.84 E-value=15 Score=33.47 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=20.7
Q ss_pred ccEEEEEEeCCCCHHHHHHHH-Hhhcc
Q 039929 82 KDNFAVTVYPNIDYAFIVALI-VILDE 107 (113)
Q Consensus 82 ~d~y~l~V~pg~D~ali~alv-v~lD~ 107 (113)
.....|-|.||.|.||+|||+ +++++
T Consensus 338 ~Ad~wlpIrPGTD~ALalgmi~~Iie~ 364 (1031)
T PRK14991 338 DNNRWLPIRPGTDSALAMGMIRWIIDN 364 (1031)
T ss_pred cCCEEeCCCCCcHHHHHHHHHHHHHHc
Confidence 445678999999999999998 44444
No 17
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=36.04 E-value=21 Score=33.44 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=21.9
Q ss_pred EEEEEEeCCCCHHHHHHHH-Hhhccccc
Q 039929 84 NFAVTVYPNIDYAFIVALI-VILDEINH 110 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alv-v~lD~~~~ 110 (113)
-.-|-|.||.|.||+|||+ +++++-..
T Consensus 292 D~WLpIrPGTD~ALaLAm~hvII~E~l~ 319 (1235)
T TIGR01580 292 DLWLAPKQGTDAALALAMGHVILREFHL 319 (1235)
T ss_pred CEEeCCCCChHHHHHHHHHHHHHHCCCc
Confidence 4678899999999999998 67766443
No 18
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=34.20 E-value=25 Score=29.59 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.5
Q ss_pred EEEEEeCCCCHHHHHHHHH
Q 039929 85 FAVTVYPNIDYAFIVALIV 103 (113)
Q Consensus 85 y~l~V~pg~D~ali~alvv 103 (113)
-.|.|.||.|.+|++||+=
T Consensus 207 ~~l~irPGTD~al~~am~~ 225 (567)
T cd02765 207 QWVPIRPGTDPALALGMIN 225 (567)
T ss_pred EEeccCCCchHHHHHHHHH
Confidence 4578999999999999983
No 19
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=34.18 E-value=24 Score=30.96 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=18.3
Q ss_pred EEEEEeCCCCHHHHHHHH-Hhhcc
Q 039929 85 FAVTVYPNIDYAFIVALI-VILDE 107 (113)
Q Consensus 85 y~l~V~pg~D~ali~alv-v~lD~ 107 (113)
..|.|.||.|.+|++||+ +++++
T Consensus 284 ~~l~irPGTD~al~lam~~~ii~e 307 (814)
T PRK14990 284 EWIPIRPGTDAALVNGLAYVMITE 307 (814)
T ss_pred eEECCCCCcHHHHHHHHHHHHHHc
Confidence 457899999999999998 44443
No 20
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=33.08 E-value=24 Score=31.08 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEEeCCCCHHHHHHHH-Hhhcc
Q 039929 85 FAVTVYPNIDYAFIVALI-VILDE 107 (113)
Q Consensus 85 y~l~V~pg~D~ali~alv-v~lD~ 107 (113)
-.|-|.||.|.+|++||+ +++++
T Consensus 222 ~wlpirPGTD~AL~lam~~~Ii~e 245 (760)
T cd02760 222 EWVPIRPKTDPAFMFAMIHVMVHE 245 (760)
T ss_pred eEeCcCCCcHHHHHHHHHHHHHhc
Confidence 458899999999999998 55554
No 21
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=31.24 E-value=41 Score=29.42 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHhh
Q 039929 84 NFAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~l 105 (113)
+..|.|.||.|.+|+.||+=.+
T Consensus 296 ~lhL~I~PGTD~AL~~al~~~I 317 (676)
T cd02756 296 VLHLQVNPGTDTALANAIARYI 317 (676)
T ss_pred ceEEeecCChHHHHHHHHHHHH
Confidence 5789999999999999998443
No 22
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=28.81 E-value=38 Score=30.03 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.9
Q ss_pred EEEEEEeCCCCHHHHHHHHH
Q 039929 84 NFAVTVYPNIDYAFIVALIV 103 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv 103 (113)
...|.|.||.|.+|++||+=
T Consensus 291 ~~~l~i~PGTD~aL~~a~~~ 310 (806)
T TIGR02693 291 VLHLRINLGTDYALFNALAT 310 (806)
T ss_pred ceEeccCCCcHHHHHHHHHH
Confidence 57899999999999999983
No 23
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=28.13 E-value=39 Score=28.71 Aligned_cols=22 Identities=18% Similarity=0.393 Sum_probs=17.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHhh
Q 039929 84 NFAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~l 105 (113)
.-.|.|.||.|.+|++||+=.+
T Consensus 217 D~~i~irPGTD~AL~lam~~~i 238 (617)
T cd02770 217 DEWIPIRPGTDAALVAAMAYVM 238 (617)
T ss_pred CEEECCCCCcHHHHHHHHHHHH
Confidence 3467899999999999998443
No 24
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=27.72 E-value=1.1e+02 Score=23.00 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=23.2
Q ss_pred eeEEEEeeecCceeEEEeCCCCcEEEEEeeeee
Q 039929 42 CDFRVKGSWFERSCTIYAGESSTIIAQMHKKHT 74 (113)
Q Consensus 42 ~~~~i~G~~~~~~~~I~~~~~g~~VAev~rk~~ 74 (113)
+.-..++-+.-|+|.|++..+|+++|+++-.|-
T Consensus 85 w~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~Wv 117 (261)
T PF01643_consen 85 WPSGFKRFFAYRDFEIYDAEDGELLARATSIWV 117 (261)
T ss_dssp EEEEE-SSEEEEEEEEE--TTS-EEEEEEEEEE
T ss_pred EeccCCCcEEEEEEEEEECCCCcEEEEEEEEEE
Confidence 334567888899999999235999999999883
No 25
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=27.57 E-value=37 Score=29.97 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=16.1
Q ss_pred EEEEeCCCCHHHHHHHH
Q 039929 86 AVTVYPNIDYAFIVALI 102 (113)
Q Consensus 86 ~l~V~pg~D~ali~alv 102 (113)
.|.|.||.|.+|++||+
T Consensus 275 ~l~irPGTD~AL~lam~ 291 (825)
T PRK15102 275 HLYVNPQTDVPLMLALA 291 (825)
T ss_pred eecccCCcHHHHHHHHH
Confidence 78999999999999998
No 26
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.89 E-value=49 Score=27.55 Aligned_cols=22 Identities=23% Similarity=0.547 Sum_probs=18.5
Q ss_pred EEEEEEeCCCCHHHHHHHHHhh
Q 039929 84 NFAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~l 105 (113)
...|.|.||.|.+|++||+=.+
T Consensus 206 d~~l~i~PGtD~al~la~~~~i 227 (565)
T cd02754 206 DLHLPIRPGTDLALLNGLLHVL 227 (565)
T ss_pred CeeeCCCCCccHHHHHHHHHHH
Confidence 4568899999999999998654
No 27
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.51 E-value=48 Score=27.54 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=18.5
Q ss_pred EEEEEEeCCCCHHHHHHHHHhh
Q 039929 84 NFAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~l 105 (113)
...|.|.||.|.+|++||+=.+
T Consensus 209 D~~l~irPGtD~aL~~a~~~~i 230 (539)
T cd02762 209 DEHLFVRPGTDAWLLAAMLAVL 230 (539)
T ss_pred CEeeCcCCCcHHHHHHHHHHHH
Confidence 4678899999999999998444
No 28
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=26.18 E-value=1.3e+02 Score=24.91 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=21.8
Q ss_pred EEEEEEeCCCCHHHHHHHHHhhccc
Q 039929 84 NFAVTVYPNIDYAFIVALIVILDEI 108 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~lD~~ 108 (113)
-+.+.+.||-|..||=||.-+++-.
T Consensus 195 d~~~qi~p~sDyelisAl~~~l~G~ 219 (429)
T COG1029 195 DNHVQIKPNSDYELISALRAALHGK 219 (429)
T ss_pred hheEecCCCCcHHHHHHHHHHhcCC
Confidence 6788999999999999999888643
No 29
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=25.77 E-value=32 Score=25.95 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=21.1
Q ss_pred eccE-EEEEEeCCCCHHHHHHHHHhhccc
Q 039929 81 GKDN-FAVTVYPNIDYAFIVALIVILDEI 108 (113)
Q Consensus 81 g~d~-y~l~V~pg~D~ali~alvv~lD~~ 108 (113)
|.|- +..-|-|..|+.|++||=+.|.+-
T Consensus 193 g~~~~~e~gvDp~lDpELA~AlrLSmeEe 221 (243)
T COG5148 193 GDDLQLEYGVDPNLDPELAEALRLSMEEE 221 (243)
T ss_pred cCccceecCCCCCCCHHHHHHHHhhHHHH
Confidence 4443 444489999999999998887653
No 30
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=25.21 E-value=45 Score=27.57 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=18.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHhh
Q 039929 84 NFAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~l 105 (113)
...|.|.||.|.+|++||+=++
T Consensus 204 d~~l~i~PGtD~al~~al~~~i 225 (501)
T cd02766 204 DLHIQIRPGTDGALALGVAKVL 225 (501)
T ss_pred CeeeccCCCcHHHHHHHHHHHH
Confidence 3568899999999999988553
No 31
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=25.16 E-value=45 Score=29.11 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.9
Q ss_pred EEEEEEeCCCCHHHHHHHH
Q 039929 84 NFAVTVYPNIDYAFIVALI 102 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alv 102 (113)
...|.|.||.|.+|++||+
T Consensus 266 d~~l~irPGtD~al~~a~~ 284 (797)
T TIGR02166 266 DEWIPIRPGTDAALVAAIA 284 (797)
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 4568899999999999998
No 32
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=24.31 E-value=53 Score=29.02 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=17.7
Q ss_pred EEEEEeCCCCHHHHHHHH-Hhhc
Q 039929 85 FAVTVYPNIDYAFIVALI-VILD 106 (113)
Q Consensus 85 y~l~V~pg~D~ali~alv-v~lD 106 (113)
-.|.|.||.|.+|++||+ ++++
T Consensus 256 ~~l~irPGtD~al~~am~~~ii~ 278 (830)
T PRK13532 256 NGIIFTPQTDLAILNYIANYIIQ 278 (830)
T ss_pred eeeccCCCCcHHHHHHHHHHHHH
Confidence 457899999999999998 4443
No 33
>PF01947 DUF98: Protein of unknown function (DUF98); InterPro: IPR002800 This entry represents a group of proteins with no known function.; PDB: 2NWI_A.
Probab=22.96 E-value=1.1e+02 Score=21.28 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=23.2
Q ss_pred EEEeeecCceeEEEeCCCCcEEEEEeeeee
Q 039929 45 RVKGSWFERSCTIYAGESSTIIAQMHKKHT 74 (113)
Q Consensus 45 ~i~G~~~~~~~~I~~~~~g~~VAev~rk~~ 74 (113)
..+|.++.|.|.|+.+ |+++..|...++
T Consensus 115 ~~~~~~~~R~Y~i~~~--~~pl~~I~E~F~ 142 (149)
T PF01947_consen 115 GCEGPFWSRTYRIIHN--GKPLMVITEVFP 142 (149)
T ss_dssp TSS-EEEEEEEEEEET--TEEEEEEEEEEE
T ss_pred CCCCCcCccEEEEEEC--CEEEEEEEEECC
Confidence 3567899999999998 899999988875
No 34
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.24 E-value=49 Score=26.87 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=17.6
Q ss_pred EEEEEeCCCCHHHHHHHHHhh
Q 039929 85 FAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 85 y~l~V~pg~D~ali~alvv~l 105 (113)
..|.|.||.|.+|++||+=.+
T Consensus 205 ~~i~i~PGtD~al~~a~~~~i 225 (454)
T cd02755 205 EWIPIKPGTDLAFVLALIHVL 225 (454)
T ss_pred EecCCCCCcHHHHHHHHHHHH
Confidence 457899999999999998544
No 35
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.07 E-value=65 Score=26.28 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=18.1
Q ss_pred EEEEEEeCCCCHHHHHHHHHhh
Q 039929 84 NFAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~l 105 (113)
...|.|.||.|.+|++||+=.+
T Consensus 208 d~~l~i~PGtD~al~~al~~~i 229 (477)
T cd02759 208 DLWLPIRPGTDAALALGMLNVI 229 (477)
T ss_pred CeeeccCCCcHHHHHHHHHHHH
Confidence 4568899999999999987544
No 36
>PLN02370 acyl-ACP thioesterase
Probab=22.03 E-value=1.3e+02 Score=24.91 Aligned_cols=30 Identities=3% Similarity=-0.017 Sum_probs=24.5
Q ss_pred EEEEeeecCceeEEEeCCCCcEEEEEeeee
Q 039929 44 FRVKGSWFERSCTIYAGESSTIIAQMHKKH 73 (113)
Q Consensus 44 ~~i~G~~~~~~~~I~~~~~g~~VAev~rk~ 73 (113)
..+.+.++.|+|.|++.++|+++|+..-.|
T Consensus 223 ~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvW 252 (419)
T PLN02370 223 SASGKNGMRRDWLVRDCKTGETLTRASSVW 252 (419)
T ss_pred eeCCCCEEEEEEEEEECCCCeEEEEEEEEE
Confidence 345677788999999875699999999887
No 37
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=22.03 E-value=47 Score=28.94 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=16.8
Q ss_pred EEEEeCCCCHHHHHHHHHh
Q 039929 86 AVTVYPNIDYAFIVALIVI 104 (113)
Q Consensus 86 ~l~V~pg~D~ali~alvv~ 104 (113)
.|-|.||.|.||++||+=.
T Consensus 251 ~l~irPGTD~Al~~gi~~~ 269 (765)
T COG0243 251 WLPIRPGTDAALALGIAHV 269 (765)
T ss_pred ccccCCCcHHHHHHHHHHH
Confidence 7899999999999999743
No 38
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=21.62 E-value=62 Score=28.66 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=16.6
Q ss_pred EEEEEeCCCCHHHHHHHHH
Q 039929 85 FAVTVYPNIDYAFIVALIV 103 (113)
Q Consensus 85 y~l~V~pg~D~ali~alvv 103 (113)
-.|.|.||.|.+|++||+=
T Consensus 256 ~~l~irPGTD~AL~lam~~ 274 (830)
T TIGR01706 256 IGIIFKPQTDLAILNYIAN 274 (830)
T ss_pred eeeccCCCCHHHHHHHHHH
Confidence 4578999999999999983
No 39
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.45 E-value=3.1e+02 Score=20.65 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=30.7
Q ss_pred eEEE-EeeecCceeEEEeCCCCcEEEEEeeee--eeeeEeeeccEEEEEE
Q 039929 43 DFRV-KGSWFERSCTIYAGESSTIIAQMHKKH--TVQSILIGKDNFAVTV 89 (113)
Q Consensus 43 ~~~i-~G~~~~~~~~I~~~~~g~~VAev~rk~--~~~~~~~g~d~y~l~V 89 (113)
.|+| .|.-++=+|.|.+.+ |.+|.+=++|. ++.=...++.+|....
T Consensus 50 ~fqV~tGG~fDVD~~I~aPd-gkvI~~~~kk~~~~~~f~ae~~G~Y~fCF 98 (209)
T KOG1693|consen 50 EFQVQTGGHFDVDYDIEAPD-GKVIYSEKKKRYDSFLFKAEGKGEYTFCF 98 (209)
T ss_pred EEEEEeCCceeeEEEEECCC-CCEEeeccccccccEEEEEecceEEEEEe
Confidence 5666 688888999998885 88888877774 2222233455665543
No 40
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.10 E-value=68 Score=27.13 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=17.5
Q ss_pred EEEEEEeCCCCHHHHHHHHHh
Q 039929 84 NFAVTVYPNIDYAFIVALIVI 104 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~ 104 (113)
...|.|.||.|.+|++||+=+
T Consensus 225 D~~l~irPGtD~aL~lam~~~ 245 (609)
T cd02751 225 AEWIPIRPGTDVALMLAMAHT 245 (609)
T ss_pred CEEECCCCCcHHHHHHHHHHH
Confidence 356789999999999999843
No 41
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.98 E-value=64 Score=26.44 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=17.4
Q ss_pred EEEEEeCCCCHHHHHHHHHhh
Q 039929 85 FAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 85 y~l~V~pg~D~ali~alvv~l 105 (113)
..|.|.||.|.+|++||+=.+
T Consensus 204 ~~l~i~PGtD~al~lal~~~l 224 (512)
T cd02753 204 LHLQLRPGTDVALLNAMAHVI 224 (512)
T ss_pred eeeCCCCCcHHHHHHHHHHHH
Confidence 458899999999999988443
No 42
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.41 E-value=69 Score=26.72 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=18.2
Q ss_pred EEEEEEeCCCCHHHHHHHHHhh
Q 039929 84 NFAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~l 105 (113)
...|.|.||.|.+|++||+=.+
T Consensus 211 D~~l~i~PGtD~al~lama~~i 232 (523)
T cd02757 211 DEWLPIKPGEDGALALAIAHVI 232 (523)
T ss_pred CEeeCCCCCcHHHHHHHHHHHH
Confidence 4667899999999999998444
No 43
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=20.39 E-value=68 Score=26.60 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.4
Q ss_pred EEEEEEeCCCCHHHHHHHHHhh
Q 039929 84 NFAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~l 105 (113)
...|.|.||.|.+|++||+=++
T Consensus 251 d~~l~irPGtD~al~lam~~~i 272 (524)
T cd02764 251 DVRLAIRPSQEKAFALGLAHKL 272 (524)
T ss_pred cceeccCcccHHHHHHHHHHHH
Confidence 4578899999999999998544
No 44
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=20.23 E-value=1.7e+02 Score=19.60 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=14.8
Q ss_pred eeEEEeCCCCcEEEEEeeee
Q 039929 54 SCTIYAGESSTIIAQMHKKH 73 (113)
Q Consensus 54 ~~~I~~~~~g~~VAev~rk~ 73 (113)
...|+|. +|+.||++...|
T Consensus 112 ~v~i~D~-~G~~Va~~~~t~ 130 (132)
T PF14539_consen 112 PVEITDA-DGEVVAEATITW 130 (132)
T ss_dssp EEEEEET-TC-EEEEEEEEE
T ss_pred EEEEEEC-CCCEEEEEEEEE
Confidence 5678888 499999999876
No 45
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.06 E-value=1e+02 Score=27.11 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=19.6
Q ss_pred ccEEEEEEeCCCCHHHHHHHHH-hhc
Q 039929 82 KDNFAVTVYPNIDYAFIVALIV-ILD 106 (113)
Q Consensus 82 ~d~y~l~V~pg~D~ali~alvv-~lD 106 (113)
.-...|-|.||.|.+|++||+= +++
T Consensus 263 ~Ad~wlpIrPGTD~AL~lam~~~Iie 288 (735)
T cd02758 263 ENIRWVPIKPGGDGALAMAMIRWIIE 288 (735)
T ss_pred cCCEEECCCCCcHHHHHHHHHHHHHH
Confidence 3355788999999999999983 443
Done!