Query 039929
Match_columns 113
No_of_seqs 110 out of 348
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 99.9 1.7E-25 5.9E-30 164.8 10.4 112 1-112 103-214 (217)
2 1zxu_A AT5G01750 protein; PFAM 94.8 0.26 8.8E-06 35.3 9.2 58 11-73 36-95 (217)
3 3u88_M Histone-lysine N-methyl 50.9 10 0.00035 22.7 2.2 19 87-105 28-46 (75)
4 2fim_A Tubby related protein 1 39.8 1.1E+02 0.0039 22.6 9.0 81 10-93 66-162 (276)
5 3c5n_A Tubby-related protein 1 37.6 83 0.0029 22.9 5.9 44 53-104 199-243 (246)
6 2fim_A Tubby related protein 1 32.6 1E+02 0.0035 22.9 5.8 44 53-104 223-267 (276)
7 1yx4_A 26S proteasome non-ATPa 29.6 6.3 0.00022 26.6 -1.2 25 83-107 28-52 (132)
8 3c5n_A Tubby-related protein 1 26.6 1.8E+02 0.0063 21.0 9.4 80 11-93 43-138 (246)
9 4gak_A Acyl-ACP thioesterase; 25.9 84 0.0029 22.1 4.2 29 44-73 85-113 (250)
10 4aay_A AROA; oxidoreductase, r 20.6 42 0.0014 28.6 1.8 22 84-105 300-321 (845)
11 1ti6_A Pyrogallol hydroxytrans 20.4 39 0.0013 28.5 1.6 22 84-105 261-282 (875)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=99.93 E-value=1.7e-25 Score=164.76 Aligned_cols=112 Identities=65% Similarity=1.137 Sum_probs=84.7
Q ss_pred CeeecCCCCCCCeEEEEEecccCCccceEEEEEcCCCCCceeeEEEEeeecCceeEEEeCCCCcEEEEEeeeeeeeeEee
Q 039929 1 QVFRGESTEPQDLIFSAKMSSMWNVRTKLDVFLANNTKEDVCDFRVKGSWFERSCTIYAGESSTIIAQMHKKHTVQSILI 80 (113)
Q Consensus 1 ~~~~g~~~~~~~~lf~vk~~~~~~~k~~~~V~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~~g~~VAev~rk~~~~~~~~ 80 (113)
++|++++.++++|+|++|+++++..+++++|+++++++++.+.|+|+|+|++++|+|+++++|++||+|+|||+++++++
T Consensus 103 ~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~~~~~~~~ 182 (217)
T 1zxu_A 103 QVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFL 182 (217)
T ss_dssp EEEETTCCCGGGEEEEEEC-------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC--------
T ss_pred EEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeeeecccccc
Confidence 36788766556899999988644468899999987655556899999999999999999855799999999999999999
Q ss_pred eccEEEEEEeCCCCHHHHHHHHHhhccccccC
Q 039929 81 GKDNFAVTVYPNIDYAFIVALIVILDEINHAS 112 (113)
Q Consensus 81 g~d~y~l~V~pg~D~ali~alvv~lD~~~~~~ 112 (113)
|+|+|.|+|.|++|++|+||+|+++|+|+.++
T Consensus 183 ~~D~y~l~V~p~~D~aliialvv~iD~~~~~~ 214 (217)
T 1zxu_A 183 GKDNFSVTVYPNVDYAFIASLVVILDDVNRED 214 (217)
T ss_dssp CBCSEEEEECTTSBHHHHHHHHHHHHHHHC--
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999998875
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=94.82 E-value=0.26 Score=35.28 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=37.2
Q ss_pred CCeEEEEEecccCCccceEEEEEcCCCCCceeeEEEEeeecC--ceeEEEeCCCCcEEEEEeeee
Q 039929 11 QDLIFSAKMSSMWNVRTKLDVFLANNTKEDVCDFRVKGSWFE--RSCTIYAGESSTIIAQMHKKH 73 (113)
Q Consensus 11 ~~~lf~vk~~~~~~~k~~~~V~~~~~~~~~~~~~~i~G~~~~--~~~~I~~~~~g~~VAev~rk~ 73 (113)
....++||++.+.+....++|+-..+ ..-|.++|.++. ..+.|+|. +|+.+.+|+||.
T Consensus 36 ~~~~l~vkqk~~~~~~~~f~V~D~~G----~~vf~V~~~~~~~~~~~~l~D~-~G~~l~~i~rk~ 95 (217)
T 1zxu_A 36 YPIDMAIVRKMMSLTDGNFVITDVNG----NLLFKVKEPVFGLHDKRVLLDG-SGTPVVTLREKM 95 (217)
T ss_dssp SCEEEEEECC-----CCCEEEEETTS----CEEEEEECSSTTCCSEEEEECT-TSCEEEEEEC--
T ss_pred CCcEEEEEEEEeEeeCCCEEEEeCCC----CEEEEEEccccCCCCEEEEECC-CCCEEEEEEccc
Confidence 45678898775544344888875432 367999998654 45667777 489999999984
No 3
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=50.91 E-value=10 Score=22.67 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=15.1
Q ss_pred EEEeCCCCHHHHHHHHHhh
Q 039929 87 VTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 87 l~V~pg~D~ali~alvv~l 105 (113)
|-|.||+|.||-+.-+|--
T Consensus 28 lgvgpGFDAALqvSa~Ig~ 46 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAIGT 46 (75)
T ss_dssp CEECCCCCHHHHHHHHHHH
T ss_pred HccCcChhHHHHHHHHHHH
Confidence 4579999999988776643
No 4
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=39.78 E-value=1.1e+02 Score=22.63 Aligned_cols=81 Identities=7% Similarity=0.162 Sum_probs=42.8
Q ss_pred CCCeEEEEEecccCCccceEEEEEcCC---CCCceeeEEEEeeecCceeEEEeCCC-------------CcEEEEEeeee
Q 039929 10 PQDLIFSAKMSSMWNVRTKLDVFLANN---TKEDVCDFRVKGSWFERSCTIYAGES-------------STIIAQMHKKH 73 (113)
Q Consensus 10 ~~~~lf~vk~~~~~~~k~~~~V~~~~~---~~~~~~~~~i~G~~~~~~~~I~~~~~-------------g~~VAev~rk~ 73 (113)
.+..|...||+.. ...+.+-|.+... ..+...-=+|+.||.+..|+|+|... ...+|.|.-+.
T Consensus 66 ~~~fLLaarK~k~-~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGtkF~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~ 144 (276)
T 2fim_A 66 KKVFLLAGRKRKR-SKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYET 144 (276)
T ss_dssp SCEEEEEEEECTT-CSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSSBCGGGCTTSCGGGBCCEEEEEEEC-
T ss_pred CCEEEEEEEeccC-CCCceEEEEecchhcccCCceEEEEEEEccCCCEEEEECCCCCcccccCcccccccEEEEEEEEEe
Confidence 3455666665422 2235566665432 11122233678999999999998721 16788888876
Q ss_pred eeeeEeeeccEEEEEEeCCC
Q 039929 74 TVQSILIGKDNFAVTVYPNI 93 (113)
Q Consensus 74 ~~~~~~~g~d~y~l~V~pg~ 93 (113)
+..+ .-|...+.+.+ |+.
T Consensus 145 nvlg-~~gPR~m~v~i-P~~ 162 (276)
T 2fim_A 145 NVLG-FRGPRRMTVII-PGM 162 (276)
T ss_dssp ---------CCEEEEE-ECB
T ss_pred cccC-CCCCeEEEEEe-cCc
Confidence 4321 13556677766 544
No 5
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=37.58 E-value=83 Score=22.92 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=28.8
Q ss_pred ceeEEEeCC-CCcEEEEEeeeeeeeeEeeeccEEEEEEeCCCCHHHHHHHHHh
Q 039929 53 RSCTIYAGE-SSTIIAQMHKKHTVQSILIGKDNFAVTVYPNIDYAFIVALIVI 104 (113)
Q Consensus 53 ~~~~I~~~~-~g~~VAev~rk~~~~~~~~g~d~y~l~V~pg~D~ali~alvv~ 104 (113)
.+|.++..+ ...+|.+..|- ++|+|+|++.-..-.--+.|+|++
T Consensus 199 KNFqLv~~~~~~~ivlqFGKv--------~~d~FtmD~~yPlS~~QAFaI~Ls 243 (246)
T 3c5n_A 199 KNFQIVHADDPDYIVLQFGRV--------AEDAFTLDYRYPLCALQAFAIALS 243 (246)
T ss_dssp TCEEEEBTTBTTSCSEEEEEE--------ETTEEEEEEETTCCHHHHHHHHHH
T ss_pred ceEEEEecCCCCEEEEEEEEe--------cCCeEEEEecCCCCHHHHHHHHHH
Confidence 457776542 23556666653 799999999988865545555443
No 6
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=32.64 E-value=1e+02 Score=22.87 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=29.0
Q ss_pred ceeEEEeCC-CCcEEEEEeeeeeeeeEeeeccEEEEEEeCCCCHHHHHHHHHh
Q 039929 53 RSCTIYAGE-SSTIIAQMHKKHTVQSILIGKDNFAVTVYPNIDYAFIVALIVI 104 (113)
Q Consensus 53 ~~~~I~~~~-~g~~VAev~rk~~~~~~~~g~d~y~l~V~pg~D~ali~alvv~ 104 (113)
.+|.++..+ ...+|.+..|- ++|+|+|++.-..-.--+.|+|++
T Consensus 223 KNFQLv~~~d~~~ivlQFGKv--------~~d~FtmD~~yPlS~~QAFaI~Ls 267 (276)
T 2fim_A 223 KNFQIVHADDPDYIVLQFGRV--------AEDAFTLDYRYPLCALQAFAIALS 267 (276)
T ss_dssp TCEEEECTTCTTSCSEEEEEE--------ETTEEEEEECTTCCHHHHHHHHHH
T ss_pred ceEEEEecCCCCEEEEEEeec--------CCCeEEEEecCCCCHHHHHHHHHH
Confidence 457777542 24566666663 799999999988864444444443
No 7
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=29.64 E-value=6.3 Score=26.62 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=20.4
Q ss_pred cEEEEEEeCCCCHHHHHHHHHhhcc
Q 039929 83 DNFAVTVYPNIDYAFIVALIVILDE 107 (113)
Q Consensus 83 d~y~l~V~pg~D~ali~alvv~lD~ 107 (113)
.-|..-|-|..|+.|+|||=|-|.+
T Consensus 28 ~~fefgvDp~~DPeLa~ALr~Smee 52 (132)
T 1yx4_A 28 SDFEFGVDPSADPELALALRVSMEE 52 (132)
T ss_dssp SSCCSCSCGGGCHHHHHHHHHHHHH
T ss_pred cccccCCCCCcCHHHHHHHHHhHHH
Confidence 3466678999999999999988765
No 8
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=26.62 E-value=1.8e+02 Score=21.03 Aligned_cols=80 Identities=8% Similarity=0.162 Sum_probs=45.1
Q ss_pred CCeEEEEEecccCCccceEEEEEcCC-C--CCceeeEEEEeeecCceeEEEeCCC-------------CcEEEEEeeeee
Q 039929 11 QDLIFSAKMSSMWNVRTKLDVFLANN-T--KEDVCDFRVKGSWFERSCTIYAGES-------------STIIAQMHKKHT 74 (113)
Q Consensus 11 ~~~lf~vk~~~~~~~k~~~~V~~~~~-~--~~~~~~~~i~G~~~~~~~~I~~~~~-------------g~~VAev~rk~~ 74 (113)
+..|...||+.. ...+.+-|.+... - ++...-=+++.|+.+..|+|+|... ...+|.|.-+.+
T Consensus 43 ~~fLlaark~~~-~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~iyD~g~~p~~~~s~~~~~~r~el~~v~Ye~n 121 (246)
T 3c5n_A 43 KVFLLAGRKRKR-SKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETN 121 (246)
T ss_dssp CCEEEEEEECTT-CSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSCBCGGGCTTSCGGGBCCEEEEEEECCC
T ss_pred cEEEEeeeeccC-CCCceEEEEeCccccccCCceEEEEEEEccCCCEEEEECCCCCcccccCcccccccEEEEEEEEEec
Confidence 345666665422 2235566666533 1 1122234778999999999998721 177888888764
Q ss_pred eeeEeeeccEEEEEEeCCC
Q 039929 75 VQSILIGKDNFAVTVYPNI 93 (113)
Q Consensus 75 ~~~~~~g~d~y~l~V~pg~ 93 (113)
..+ .-|...+.+.+ |+.
T Consensus 122 ~l~-~~gPR~m~v~i-P~~ 138 (246)
T 3c5n_A 122 VLG-FRGPRRMTVII-PGM 138 (246)
T ss_dssp CCC----CCCEEEEE-ECB
T ss_pred ccC-CCCCeEEEEEe-cCc
Confidence 321 13566677766 544
No 9
>4gak_A Acyl-ACP thioesterase; MCSG, PSI-biology, structural genomics, midwest center for S genomics, hydrolase; HET: MSE; 1.90A {Spirosoma linguale}
Probab=25.92 E-value=84 Score=22.13 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=23.8
Q ss_pred EEEEeeecCceeEEEeCCCCcEEEEEeeee
Q 039929 44 FRVKGSWFERSCTIYAGESSTIIAQMHKKH 73 (113)
Q Consensus 44 ~~i~G~~~~~~~~I~~~~~g~~VAev~rk~ 73 (113)
-.+.+.+..|+|.|.+.+ |+++|+.+-.|
T Consensus 85 ~~~~~~~~~r~~~i~d~~-g~~l~~a~s~w 113 (250)
T 4gak_A 85 TTVDKYFIHRDFRVLATD-GTLLADARSTW 113 (250)
T ss_dssp EEECSSEEEEEEEEEETT-CCEEEEEEEEE
T ss_pred EEcCCCEEEEEEEEEeCC-CCEEEEEEEEE
Confidence 455678889999999874 89999988776
No 10
>4aay_A AROA; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=20.56 E-value=42 Score=28.61 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=18.7
Q ss_pred EEEEEEeCCCCHHHHHHHHHhh
Q 039929 84 NFAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~l 105 (113)
...|.|.||.|.+|++||+=++
T Consensus 300 ~~~l~irPGTD~AL~~a~~~~i 321 (845)
T 4aay_A 300 VLHLAINSGTDLALFNALFTYI 321 (845)
T ss_dssp EEEECCCTTCHHHHHHHHHHHH
T ss_pred ceEEeecCCcHHHHHHHHHHHH
Confidence 4789999999999999997443
No 11
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=20.35 E-value=39 Score=28.55 Aligned_cols=22 Identities=14% Similarity=-0.037 Sum_probs=18.4
Q ss_pred EEEEEEeCCCCHHHHHHHHHhh
Q 039929 84 NFAVTVYPNIDYAFIVALIVIL 105 (113)
Q Consensus 84 ~y~l~V~pg~D~ali~alvv~l 105 (113)
...|-|.||.|.+|++||+=++
T Consensus 261 d~~l~irPGTD~aL~~am~~~i 282 (875)
T 1ti6_A 261 DKWFSPKIGTDHALSFAIAYTW 282 (875)
T ss_dssp SEEECCCTTCHHHHHHHHHHHH
T ss_pred CEEeccCCCcHHHHHHHHHHHH
Confidence 5669999999999999997543
Done!