BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039930
         (245 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P43432|IL12B_MOUSE Interleukin-12 subunit beta OS=Mus musculus GN=Il12b PE=1 SV=1
          Length = 335

 Score = 32.0 bits (71), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 113 QKLWHSHA--YEVKSGLWVNPRVPEMIGRPELDNMAKTY-GKFWCTWQVDRGDRLPLGAP 169
           + L HSH   ++ ++G+W    +     +  L   A  Y G+F C+W V R   L     
Sbjct: 95  ETLSHSHLLLHKKENGIWSTEILKNFKNKTFLKCEAPNYSGRFTCSWLVQRNMDLKFNIK 154

Query: 170 ALMMSP--QAVNLGMV-----RPDLVQKRDDKYNIS 198
           +   SP  +AV  GM      +  L Q+  +KY++S
Sbjct: 155 SSSSSPDSRAVTCGMASLSAEKVTLDQRDYEKYSVS 190


>sp|P0DKV0|S31C1_HUMAN Spermatogenesis-associated protein 31C1 OS=Homo sapiens
           GN=SPATA31C1 PE=2 SV=1
          Length = 1188

 Score = 31.2 bits (69), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 181 GMVRPDLVQKRDDKYNISTDALKQSRVEIDEPEWISPQADYWKQ 224
           G+  P  VQK  D +++ST  L Q R+    PE      + W+Q
Sbjct: 415 GLALPSRVQKSQDVFSVSTPNLPQERLTSILPENFPVSPELWRQ 458


>sp|B4DYI2|S31C2_HUMAN Spermatogenesis-associated protein 31C2 OS=Homo sapiens
           GN=SPATA31C2 PE=2 SV=2
          Length = 1134

 Score = 31.2 bits (69), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 181 GMVRPDLVQKRDDKYNISTDALKQSRVEIDEPEWISPQADYWKQ 224
           G+  P  VQK  D +++ST  L Q R+    PE      + W+Q
Sbjct: 409 GLALPSRVQKSQDVFSVSTPNLPQERLTSILPENFPVSPELWRQ 452


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.132    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,211,919
Number of Sequences: 539616
Number of extensions: 4308603
Number of successful extensions: 10472
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10465
Number of HSP's gapped (non-prelim): 13
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)